Citrus Sinensis ID: 028080

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccEEEEEEccccccccccccccccccccEEEEcccHHHHHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHHHHcccccHHHccccEEEEccHHHHHHHHHHHHcccccccHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHccHHHccccEEEEEEEccccccccccccccccccccEEEEEEEHHHHHEEEEEEccccccccEEEEEccccccHHHHHHHHHHHHcccccccccccEEEEccHHHHHHHHHHHHHHHHHcccccHHHccEEEEEccHHHHHHHHHHHHHcccccccHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mgpdhphylqsfelggEARHLQIARLLdcttwsgagpglmDAVTKGAmqagkpvggfkvgkeagewtasnfhpylpletylTCRFfsarkhglidcavrndscdrtavvalpggvgtLDEMFEILALIQLErigselpvpflVMNYDSFYKKLLDFLgdcedwgtVAKDEVASLWKICDSNSEALSYLAEFydlssidkrVHEVNLKSTHGIVS
Flexible Loop (DISEMBL)
MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Low Complexity Region (SEG)
MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Disordered region (IsUnstruct)
********LQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEV**********
Disordered Region (DISOPRED)
**PDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSS******************
Disordered Region (DISEMBL)
MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Disordered Region (DISPRO)
MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSS******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q7XDB8	204	Probable cytokinin ribosi	no	no	0.668	0.700	0.260	0.0002

>sp|Q7XDB8|LOGLA_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica GN=LOGL10 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 22/165 (13%)

Query: 2   GPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGK 61
           G    ++  + ELG E     +AR +D   + G   GLM  V++     G+ V       
Sbjct: 18  GKKRSYHDAAIELGNEL----VARSIDLV-YGGGSIGLMGLVSQAVFDGGRHV------- 65

Query: 62  EAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 121
             G    +   P +  ET    R  +       + A ++D     A +ALPGG GTL+E+
Sbjct: 66  -IGVIPKTLMTPEISGETVGEVRPVADMHQRKAEMARQSD-----AFIALPGGYGTLEEL 119

Query: 122 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
            E++   QL         P  ++N D +Y  LL F+    + G +
Sbjct: 120 LEVITWAQL----GIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFI 160

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: nEC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
255576280	302	carboxy-lyase, putative [Ricinus communi	0.957	0.678	0.758	1e-89
156138540	305	putative lysine decarbxylase [Nicotiana	0.901	0.632	0.757	8e-89
224100075	226	predicted protein [Populus trichocarpa]	0.883	0.836	0.798	1e-88
356527115	305	PREDICTED: probable cytokinin riboside 5	0.957	0.672	0.742	1e-88
357459923	312	hypothetical protein MTR_3g055920 [Medic	0.976	0.669	0.734	3e-87
225460791	310	PREDICTED: uncharacterized protein LOC10	0.976	0.674	0.728	7e-87
357459921	312	hypothetical protein MTR_3g055920 [Medic	0.976	0.669	0.730	1e-86
449467507	298	PREDICTED: probable cytokinin riboside 5	0.957	0.687	0.709	1e-86
50399936	335	expressed protein [Oryza sativa Japonica	0.897	0.573	0.730	4e-84
242038951	329	hypothetical protein SORBIDRAFT_01g01550	0.920	0.598	0.719	7e-84

>gi|255576280|ref|XP_002529033.1| carboxy-lyase, putative [Ricinus communis] gi|223531513|gb|EEF33344.1| carboxy-lyase, putative [Ricinus communis]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/211 (75%), Positives = 178/211 (84%), Gaps = 6/211 (2%)

Query: 1   MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60
           MGPDHPHYLQ+ EL  E     +A+LLDCT+W GAGPGLMDA  KGA+QAGKPVGGFK+ 
Sbjct: 97  MGPDHPHYLQALELSRE-----VAKLLDCTSWMGAGPGLMDATIKGALQAGKPVGGFKIA 151

Query: 61  KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 120
           KEAGEWTASNFHPYLP ETYLTCRFFSARKHGL+D AVRN   DRTAVVALPGG+GTLDE
Sbjct: 152 KEAGEWTASNFHPYLPSETYLTCRFFSARKHGLVDAAVRNTRSDRTAVVALPGGIGTLDE 211

Query: 121 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 180
           MFEILALIQLERIGS LPVPF+VMNYDSFY+KLLDF+ +CEDWGTV+K EV  LWKIC+S
Sbjct: 212 MFEILALIQLERIGSALPVPFIVMNYDSFYQKLLDFIQNCEDWGTVSKGEVTPLWKICNS 271

Query: 181 NSEALSYLAEFYDL-SSIDKRVHEVNLKSTH 210
           NSEAL+YL +FY+L SS D+  H     S H
Sbjct: 272 NSEALAYLTDFYNLHSSSDEYGHGKMPTSAH 302

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156138540|emb|CAO91858.1| putative lysine decarbxylase [Nicotiana tabacum]

 Score =  332 bits (850), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 150/198 (75%), Positives = 177/198 (89%), Gaps = 5/198 (2%)

Query: 1   MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60
           MGP+HPHY+++FELG      +IA LLDCTTWSGAGPGLMDA T+GA+QAGKPVGGFK+G
Sbjct: 98  MGPEHPHYIKTFELGS-----KIATLLDCTTWSGAGPGLMDAATQGALQAGKPVGGFKIG 152

Query: 61  KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 120
           +EAGEWTASNFHPYLP E+YLTCRFFSARKHGL+D  VR  S +RTAVVALPGG+GTLDE
Sbjct: 153 REAGEWTASNFHPYLPSESYLTCRFFSARKHGLVDAVVRCKSSERTAVVALPGGIGTLDE 212

Query: 121 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 180
           +FEI+ALIQLERIGS+LPVPFL+MNYDSFY  LL+FL DCE WGTV+K+EV+SLWK+C++
Sbjct: 213 IFEIMALIQLERIGSQLPVPFLLMNYDSFYSNLLEFLNDCEKWGTVSKNEVSSLWKVCNN 272

Query: 181 NSEALSYLAEFYDLSSID 198
           NSEAL+YL EFY LS ++
Sbjct: 273 NSEALAYLTEFYGLSPVE 290

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100075|ref|XP_002311733.1| predicted protein [Populus trichocarpa] gi|222851553|gb|EEE89100.1| predicted protein [Populus trichocarpa]

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 155/194 (79%), Positives = 174/194 (89%), Gaps = 5/194 (2%)

Query: 1   MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60
           MGPDHPHY Q+ ELG E     +A LLDCT+W+GAGPGLMDA TKGA++AGKPVGGFK+ 
Sbjct: 37  MGPDHPHYSQALELGRE-----VANLLDCTSWTGAGPGLMDAATKGALEAGKPVGGFKIA 91

Query: 61  KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 120
           KEAGEWTASNFH YLP ETYLTCRFFSARKHGL+D AVR+   DRTAVVALPGG+GTLDE
Sbjct: 92  KEAGEWTASNFHSYLPSETYLTCRFFSARKHGLVDAAVRSSCSDRTAVVALPGGIGTLDE 151

Query: 121 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 180
           MFEIL LIQL+RIGSELPVPFLVMNYDS+Y+KLLDFLGDCE+WGTV+K EVASLWKIC++
Sbjct: 152 MFEILTLIQLQRIGSELPVPFLVMNYDSYYQKLLDFLGDCENWGTVSKGEVASLWKICEN 211

Query: 181 NSEALSYLAEFYDL 194
           NSEAL+YLA+FY L
Sbjct: 212 NSEALAYLADFYGL 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527115|ref|XP_003532159.1| PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3-like [Glycine max]

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 156/210 (74%), Positives = 178/210 (84%), Gaps = 5/210 (2%)

Query: 1   MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60
           MGP H HY+Q+ EL  E     IA LLDCT+WSGAGPGLMDAVT+G+M AGKPVGGFK+G
Sbjct: 96  MGPSHSHYVQAQELAKE-----IANLLDCTSWSGAGPGLMDAVTQGSMLAGKPVGGFKIG 150

Query: 61  KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 120
           +EAGEWTASNFHPYLP E YLT RFFSARKHGL+D  VRN+S D+TAVVALPGG+GTLDE
Sbjct: 151 REAGEWTASNFHPYLPSENYLTFRFFSARKHGLVDAVVRNNSFDKTAVVALPGGIGTLDE 210

Query: 121 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 180
           +FEILALIQLERIGS+ PVPFL+MNYDSFY KLL+FL DCE WGTV+K EVASLWK+C+S
Sbjct: 211 VFEILALIQLERIGSKFPVPFLLMNYDSFYSKLLEFLNDCEGWGTVSKGEVASLWKVCNS 270

Query: 181 NSEALSYLAEFYDLSSIDKRVHEVNLKSTH 210
           NSEAL+YL EFY +SS DK  +   L ST+
Sbjct: 271 NSEALAYLEEFYGISSSDKSKNVTKLYSTY 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459923|ref|XP_003600243.1| hypothetical protein MTR_3g055920 [Medicago truncatula] gi|217074988|gb|ACJ85854.1| unknown [Medicago truncatula] gi|355489291|gb|AES70494.1| hypothetical protein MTR_3g055920 [Medicago truncatula]

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/215 (73%), Positives = 181/215 (84%), Gaps = 6/215 (2%)

Query: 1   MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60
           MG  H HY+Q+ EL  E     IA LLD TTWSGAGPGLMDAVT+GA+ AGKPVGGFK+G
Sbjct: 103 MGSSHSHYVQAQELAKE-----IANLLDSTTWSGAGPGLMDAVTQGALLAGKPVGGFKIG 157

Query: 61  KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 120
           +EAGEWTASNFHPYLP E YLTCRFFSARKHGL+D  VRN+S D+TAVVALPGG+GTLDE
Sbjct: 158 REAGEWTASNFHPYLPSENYLTCRFFSARKHGLVDAVVRNNSFDKTAVVALPGGIGTLDE 217

Query: 121 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 180
           +FE+LALIQLERIGS+LPVPFL+MNYDSFY KLLDFL  CED GTV+K EVASLWK+C+S
Sbjct: 218 LFEMLALIQLERIGSKLPVPFLLMNYDSFYSKLLDFLDVCEDRGTVSKGEVASLWKVCNS 277

Query: 181 NSEALSYLAEFYDLSSID-KRVHEVNLKSTHGIVS 214
           NSEAL+YLA+FY +SS D  +  E  L+STH + S
Sbjct: 278 NSEALAYLADFYCISSGDISQKKETKLQSTHDLPS 312

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460791|ref|XP_002276560.1| PREDICTED: uncharacterized protein LOC100243479 [Vitis vinifera] gi|297737525|emb|CBI26726.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (833), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 156/214 (72%), Positives = 178/214 (83%), Gaps = 5/214 (2%)

Query: 1   MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60
           MGPDH HYLQ+ ELG E     +A LLDCT+W+GAGPGLMDA +KGA+QAGKPVGGFK+G
Sbjct: 93  MGPDHSHYLQALELGRE-----VANLLDCTSWTGAGPGLMDAASKGALQAGKPVGGFKIG 147

Query: 61  KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 120
           +EAG+ TA +FHPYLP ETY TCRFFSARKHGL+D AVR+ +CDRTAVVALPGG+GTLDE
Sbjct: 148 REAGQQTALSFHPYLPSETYFTCRFFSARKHGLVDAAVRSCNCDRTAVVALPGGIGTLDE 207

Query: 121 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 180
           +FEILALIQL+RIGSELPVPFL+MNYDSFY KLLDFL D E WGTV K EV SLWK+C++
Sbjct: 208 VFEILALIQLQRIGSELPVPFLLMNYDSFYSKLLDFLSDSECWGTVCKGEVESLWKVCNN 267

Query: 181 NSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS 214
           NSEALSYLAEFYDL   D    E  L +  G +S
Sbjct: 268 NSEALSYLAEFYDLPLGDNGKCETGLATASGPIS 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459921|ref|XP_003600242.1| hypothetical protein MTR_3g055920 [Medicago truncatula] gi|355489290|gb|AES70493.1| hypothetical protein MTR_3g055920 [Medicago truncatula]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 157/215 (73%), Positives = 180/215 (83%), Gaps = 6/215 (2%)

Query: 1   MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60
           MG  H HY+Q+ EL  EA       LLD TTWSGAGPGLMDAVT+GA+ AGKPVGGFK+G
Sbjct: 103 MGSSHSHYVQAQELAKEA-----TNLLDSTTWSGAGPGLMDAVTQGALLAGKPVGGFKIG 157

Query: 61  KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 120
           +EAGEWTASNFHPYLP E YLTCRFFSARKHGL+D  VRN+S D+TAVVALPGG+GTLDE
Sbjct: 158 REAGEWTASNFHPYLPSENYLTCRFFSARKHGLVDAVVRNNSFDKTAVVALPGGIGTLDE 217

Query: 121 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 180
           +FE+LALIQLERIGS+LPVPFL+MNYDSFY KLLDFL  CED GTV+K EVASLWK+C+S
Sbjct: 218 LFEMLALIQLERIGSKLPVPFLLMNYDSFYSKLLDFLDVCEDRGTVSKGEVASLWKVCNS 277

Query: 181 NSEALSYLAEFYDLSSID-KRVHEVNLKSTHGIVS 214
           NSEAL+YLA+FY +SS D  +  E  L+STH + S
Sbjct: 278 NSEALAYLADFYCISSGDISQKKETKLQSTHDLPS 312

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467507|ref|XP_004151464.1| PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9-like [Cucumis sativus] gi|449524603|ref|XP_004169311.1| PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9-like [Cucumis sativus]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 149/210 (70%), Positives = 175/210 (83%), Gaps = 5/210 (2%)

Query: 1   MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60
           MGPDH HY Q+FEL  E     I+ LLDCTTWSG GPGLMDAVTKGA+QAG PVGGFK+G
Sbjct: 94  MGPDHAHYKQAFELSRE-----ISELLDCTTWSGVGPGLMDAVTKGALQAGNPVGGFKIG 148

Query: 61  KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 120
           +E+GEWT+S FHPYLP ETY TCRFFSARKHGL+D AVR+ S DRTA V LPGG+GT DE
Sbjct: 149 RESGEWTSSKFHPYLPTETYFTCRFFSARKHGLVDAAVRSCSSDRTAFVTLPGGIGTFDE 208

Query: 121 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 180
           +FEILALIQL RIGS+LPVPFL+MNYDSFY KLL+F  DCE+WGT+AK EV SLWK+CD+
Sbjct: 209 VFEILALIQLRRIGSKLPVPFLLMNYDSFYSKLLEFFNDCENWGTLAKGEVDSLWKVCDN 268

Query: 181 NSEALSYLAEFYDLSSIDKRVHEVNLKSTH 210
           N++A++YL+ FY L   D+  +EV L+STH
Sbjct: 269 NADAVAYLSSFYSLCDQDRVKNEVGLESTH 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50399936|gb|AAT76324.1| expressed protein [Oryza sativa Japonica Group] gi|108709566|gb|ABF97361.1| Possible lysine decarboxylase family protein, expressed [Oryza sativa Japonica Group] gi|215736866|dbj|BAG95795.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 144/197 (73%), Positives = 168/197 (85%), Gaps = 5/197 (2%)

Query: 3   PDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 62
           P HPHYL + EL  E     IARLLDCTTWSGAGPG MDA T+GA++AGKPVGGFK+GKE
Sbjct: 130 PTHPHYLHAAELSRE-----IARLLDCTTWSGAGPGFMDAATQGALEAGKPVGGFKIGKE 184

Query: 63  AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 122
           AGEWT SNFHPYLP E+YLTCRFFSARKHGL+D AVRN   DRTA++ALPGG+GTLDE+F
Sbjct: 185 AGEWTTSNFHPYLPSESYLTCRFFSARKHGLVDAAVRNCPTDRTAIIALPGGIGTLDELF 244

Query: 123 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 182
           E++ALIQLERIGS LPVPFL++NYDS+Y KLLDFL DCE+WGTVA  EVASLWK+C+ N 
Sbjct: 245 EMMALIQLERIGSTLPVPFLLLNYDSYYSKLLDFLNDCEEWGTVAPGEVASLWKVCNGNH 304

Query: 183 EALSYLAEFYDLSSIDK 199
           EAL YLA+FY++   ++
Sbjct: 305 EALEYLAQFYNVPLAER 321

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242038951|ref|XP_002466870.1| hypothetical protein SORBIDRAFT_01g015500 [Sorghum bicolor] gi|241920724|gb|EER93868.1| hypothetical protein SORBIDRAFT_01g015500 [Sorghum bicolor]

 Score =  315 bits (807), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 146/203 (71%), Positives = 172/203 (84%), Gaps = 6/203 (2%)

Query: 3   PDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 62
           P HPH+LQ+ EL  E     IARLLDCTTW+GAGPGLMDA  +GA++AGKPVGG K+ KE
Sbjct: 120 PTHPHFLQTTELARE-----IARLLDCTTWTGAGPGLMDAAIQGALEAGKPVGGLKIAKE 174

Query: 63  AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 122
           AGEWT+S FHPYLP ETYLTCRFFSARKHGL+D AVR+   DRTAVVALPGGVGTLDE+F
Sbjct: 175 AGEWTSSGFHPYLPPETYLTCRFFSARKHGLVDAAVRSSPTDRTAVVALPGGVGTLDELF 234

Query: 123 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 182
           EI+ALIQLERIGS LPVPFL++NYDS+Y KLLDFL DC++WGTVA  EV SLWK+CD N 
Sbjct: 235 EIMALIQLERIGSALPVPFLLLNYDSYYSKLLDFLNDCQEWGTVAPGEVESLWKVCDGNH 294

Query: 183 EALSYLAEFYDLSSIDKRVHEVN 205
           EAL YLAEFY++ + D+R ++++
Sbjct: 295 EALEYLAEFYNVPA-DQRNYQIS 316

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:505006177	306	AT1G50575 "AT1G50575" [Arabido	0.939	0.656	0.676	1.5e-74
UNIPROTKB|Q0BZM4	250	HNE_2374 "Putative uncharacter	0.621	0.532	0.333	2.4e-12
TIGR_CMR|SPO_3342	291	SPO_3342 "decarboxylase family	0.640	0.470	0.299	5.5e-08
TIGR_CMR|GSU_1904	342	GSU_1904 "decarboxylase family	0.668	0.418	0.265	2.9e-05
CGD|CAL0000804	222	orf19.1723 [Candida albicans (	0.383	0.369	0.340	6.2e-05
UNIPROTKB|Q5AJ69	222	CaO19.1723 "Putative uncharact	0.383	0.369	0.340	6.2e-05
TIGR_CMR|GSU_2766	196	GSU_2766 "decarboxylase family	0.205	0.224	0.437	7.8e-05
TAIR|locus:2164280	217	LOG7 "AT5G06300" [Arabidopsis	0.266	0.262	0.409	0.00025

TAIR|locus:505006177 AT1G50575 "AT1G50575" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 140/207 (67%), Positives = 170/207 (82%)

Query:     3 PDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 62
             P+H HYLQ+ EL  EA     A LLDCTTWSGAGPGLMDAVT+GA++A KPVGG K+ KE
Sbjct:   101 PNHSHYLQAQELSREA-----ATLLDCTTWSGAGPGLMDAVTEGALEAEKPVGGIKIEKE 155

Query:    63 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 122
             AGEWTAS FHPYLP + Y TCRFFSARKHGL+D  +RN+  ++TA++ALPGG+GTLDEMF
Sbjct:   156 AGEWTASKFHPYLPPQNYHTCRFFSARKHGLVDAVIRNNVSEKTAIIALPGGIGTLDEMF 215

Query:   123 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 182
             EILALIQLERIGS LPVPF+VMNYD+FY KLL+F+  CE+ GTV+K EV++LWK+C++N 
Sbjct:   216 EILALIQLERIGSALPVPFIVMNYDAFYSKLLEFIETCENLGTVSKGEVSALWKVCNNNF 275

Query:   183 EALSYLAEFYDLSSIDKRVHEVNLKST 209
             EAL+YLAEFYDL     ++ E  L+ T
Sbjct:   276 EALTYLAEFYDLPDGSAKL-ETELRKT 301

GO:0008152 "metabolic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016831 "carboxy-lyase activity" evidence=ISS

UNIPROTKB|Q0BZM4 HNE_2374 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 51/153 (33%), Positives = 80/153 (52%)

Query:    33 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 92
             +G GPG+M+A  +GA  AG    GF +  +     A N  PY+  +      +F+ RK  
Sbjct:   102 TGGGPGIMEAANRGARDAGAVTIGFNI--QLPHEQAPN--PYITSQLSFQFHYFAMRKMH 157

Query:    93 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD-SFYK 151
             L   A+R       A+V  PGG GT+DE+FE+L L Q  + G  +PV   V+ YD  F+ 
Sbjct:   158 L---AMR-----ARALVIFPGGFGTMDELFELLTLSQTGK-GHHMPV---VL-YDRDFWT 204

Query:   152 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 184
             ++++F     D G ++ D++  L++  D   EA
Sbjct:   205 RIINFEA-LADAGVISPDDL-KLFEFADDPEEA 235

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_3342 SPO_3342 "decarboxylase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 141 (54.7 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 47/157 (29%), Positives = 80/157 (50%)

Query:    33 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 91
             +G GPG+M+A  +GA  AG    G  +     +  A N   ++  E      +F+ RK H
Sbjct:   139 TGGGPGVMEAGNRGAKDAGGCSIGLNIVLPHEQ--APNL--FVTPELSFNFHYFAIRKMH 194

Query:    92 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 151
              L+            A+   PGG GTLDE+FE L LIQ  R+     VPFL+   + F++
Sbjct:   195 FLMRAR---------AITIFPGGFGTLDELFESLTLIQTGRMER---VPFLLFGRE-FWE 241

Query:   152 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 188
             +++++     D GT++ +++  L++  D+  EA+  +
Sbjct:   242 RVINWRA-LADAGTISAEDL-DLFRFVDTAQEAVEII 276

GO:0008152 "metabolic process" evidence=ISS

GO:0016831 "carboxy-lyase activity" evidence=ISS

TIGR_CMR|GSU_1904 GSU_1904 "decarboxylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 121 (47.7 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 43/162 (26%), Positives = 70/162 (43%)

Query:    33 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 92
             +G GPG+M A  +GA          ++  E         +P L     +  ++F  RK  
Sbjct:   112 TGGGPGIMQAGNEGAGSDRSFAVNIRLPFEQKPNPVMLQNPRL-----INYKYFFNRKVA 166

Query:    93 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPF-LVMNYDSFYK 151
              +         +  A+   PGG GTLDE  E+  LIQ    G   P P  L+ + D ++ 
Sbjct:   167 FVK--------ESNAIAVFPGGFGTLDEAMEVFTLIQT---GKTSPKPLVLIDDSDGYWD 215

Query:   152 KLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEALSYLAEFY 192
             +  DF+  C    G ++ ++  S++ I     EA+  + EFY
Sbjct:   216 RWFDFVTSCILGKGFISAEDF-SIFTITRDEDEAIRVIEEFY 256

GO:0008152 "metabolic process" evidence=ISS

GO:0016831 "carboxy-lyase activity" evidence=ISS

CGD|CAL0000804 orf19.1723 [Candida albicans (taxid:5476)]

 Score = 107 (42.7 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
 Identities = 30/88 (34%), Positives = 49/88 (55%)

Query:   107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
             A VALPGG+G++DE+ EI    QL   G  + V  +   YD+F+K +  F+ DC   G +
Sbjct:   129 AFVALPGGIGSIDELAEITTWCQLNIHGKPIVVYNVDGYYDNFFKMIQGFV-DC---GFL 184

Query:   167 AKDEVASLWKICDSNSEALSYLAEFYDL 194
             ++     + K+ +S  E L  + E Y++
Sbjct:   185 SEKN-GQIIKVANSVEEVLEII-ENYEI 210

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0014074 "response to purine-containing compound" evidence=IEA

UNIPROTKB|Q5AJ69 CaO19.1723 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 107 (42.7 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
 Identities = 30/88 (34%), Positives = 49/88 (55%)

Query:   107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
             A VALPGG+G++DE+ EI    QL   G  + V  +   YD+F+K +  F+ DC   G +
Sbjct:   129 AFVALPGGIGSIDELAEITTWCQLNIHGKPIVVYNVDGYYDNFFKMIQGFV-DC---GFL 184

Query:   167 AKDEVASLWKICDSNSEALSYLAEFYDL 194
             ++     + K+ +S  E L  + E Y++
Sbjct:   185 SEKN-GQIIKVANSVEEVLEII-ENYEI 210

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|GSU_2766 GSU_2766 "decarboxylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 101 (40.6 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query:   109 VALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDF 156
             +ALPGG+GT++E  E+L  +QL   G     P  ++N D +Y +LLDF
Sbjct:   102 IALPGGIGTIEEFVEVLTWLQLGIHGK----PCGLLNSDGYYDRLLDF 145

GO:0008152 "metabolic process" evidence=ISS

GO:0016831 "carboxy-lyase activity" evidence=ISS

TAIR|locus:2164280 LOG7 "AT5G06300" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00025, Sum P(2) = 0.00024
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query:   107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
             A +ALPGG GTL+E+ E++   QL  I  + PV  L  N D +Y  LL F+    D G +
Sbjct:   107 AFIALPGGYGTLEELLEVITWAQLG-IHRK-PVGLL--NVDGYYNSLLTFIDKAVDEGFI 162

Query:   167 A 167
             +
Sbjct:   163 S 163

GO:0008152 "metabolic process" evidence=ISS

GO:0016831 "carboxy-lyase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006826 "iron ion transport" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
pfam03641	130	pfam03641, Lysine_decarbox, Possible lysine decarb	2e-26
COG1611	205	COG1611, COG1611, Predicted Rossmann fold nucleoti	4e-18
TIGR00730	178	TIGR00730, TIGR00730, TIGR00730 family protein	7e-11

>gnl|CDD|217655 pfam03641, Lysine_decarbox, Possible lysine decarboxylase

 Score = 98.4 bits (246), Expect = 2e-26
 Identities = 44/151 (29%), Positives = 62/151 (41%), Gaps = 24/151 (15%)

Query: 40  MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR---FFSARKHGLIDC 96
           M AV  GA++AG  V G      A E         +P               RK  +   
Sbjct: 1   MGAVADGALEAGGRVIGIIPNILAPE--------EIPNPIVTELIIVPDMHERKAAMARL 52

Query: 97  AVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDF 156
           A         A VALPGG GTL+E+FEIL  IQL         P +++N + +Y  LL+F
Sbjct: 53  A--------DAFVALPGGFGTLEELFEILTWIQLGIH----QKPIILLNPNGYYDPLLEF 100

Query: 157 LGDCEDWGTVAKDEVASLWKICDSNSEALSY 187
           +    + G ++      L  + D   EA+  
Sbjct: 101 IDHMVEEGFISP-AARELIIVVDDPEEAVEK 130

The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear. Length = 130

>gnl|CDD|224527 COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]

 Score = 78.5 bits (194), Expect = 4e-18
 Identities = 58/192 (30%), Positives = 83/192 (43%), Gaps = 25/192 (13%)

Query: 3   PDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGF-KVGK 61
               +Y  + ELG   R L    LL  T   G GPG+M+AV +GA++AG  V G      
Sbjct: 28  EPEEYYELARELG---RELAKRGLLVIT---GGGPGVMEAVARGALEAGGLVVGILPGLL 81

Query: 62  EAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 121
              E        Y  +E      F   RK  ++       S D  A + LPGG GTL+E+
Sbjct: 82  HEQEPP-----NYEVIELITGMDFA-ERKRAMVR------SAD--AFIVLPGGFGTLEEL 127

Query: 122 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVA-KDEVASLWKICDS 180
           FE L L Q       L  P L++N + F++ LL+FL D          +    L  + D 
Sbjct: 128 FEALTLGQTGVHA--LTPPPLILNGNGFWEPLLEFL-DPHLIVEGLISEADRELLIVVDD 184

Query: 181 NSEALSYLAEFY 192
             EA+  + ++ 
Sbjct: 185 AEEAIDAILKYL 196

Length = 205

>gnl|CDD|129813 TIGR00730, TIGR00730, TIGR00730 family protein

 Score = 58.7 bits (142), Expect = 7e-11
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 20/155 (12%)

Query: 32  WSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KEAGEWTASNFHPYLPLETYLTCRFFSARK 90
           + G   GLM A+   AM+ G    G  VG   +G ++    H  L     +       RK
Sbjct: 37  YGGGRVGLMGAIADAAMENG----GTAVGVNPSGLFSGEVVHQNLTELIEVN--GMHERK 90

Query: 91  HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 150
             + + A         A +A+PGG GTL+E+FE+L   QL   G       L  N +  +
Sbjct: 91  AMMAELA--------DAFIAMPGGFGTLEELFEVLTWAQL---GIHQKPIILF-NVNGHF 138

Query: 151 KKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 185
             L+++L      G +++  +  L  +     E +
Sbjct: 139 DGLVEWLKYSIQEGFISESHL-KLIHVVSRPDELI 172

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by This model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions [Hypothetical proteins, Conserved]. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
TIGR00730	178	conserved hypothetical protein, DprA/Smf-related,	100.0
COG1611	205	Predicted Rossmann fold nucleotide-binding protein	100.0
PF03641	133	Lysine_decarbox: Possible lysine decarboxylase; In	100.0
TIGR00725	159	conserved hypothetical protein, DprA/Smf-related,	100.0
TIGR00732	220	dprA DNA protecting protein DprA. Disruption of th	98.96
PF02481	212	DNA_processg_A: DNA recombination-mediator protein	98.06
PRK10736	374	hypothetical protein; Provisional	97.25
COG0758	350	Smf Predicted Rossmann fold nucleotide-binding pro	96.3
PF12694	145	MoCo_carrier: Putative molybdenum carrier; InterPr	93.6
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	92.02
PRK10565	508	putative carbohydrate kinase; Provisional	87.9
PF13528	318	Glyco_trans_1_3: Glycosyl transferase family 1	83.25
KOG3614	1381	consensus Ca2+/Mg2+-permeable cation channels (LTR	81.78

>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2

Probab=100.00  E-value=7.9e-47  Score=313.13  Aligned_cols=164  Identities=26%  Similarity=0.411  Sum_probs=144.2

Q ss_pred             CcHHHH-HHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecCC-cccccccCCCCCCCCcccee
Q 028080            4 DHPHYL-QSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGK-EAGEWTASNFHPYLPLETYL   81 (214)
Q Consensus         4 ~~~~y~-~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~~-e~~e~~~~~~n~~l~~e~~i   81 (214)
                      .+|.|. .|++||++     ||++|..+|||||.+|+|+|+++||+++||.|+||+|.. ...+    .+|++++  .++
T Consensus        13 ~~~~~~~~A~~lG~~-----la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~----~~~~~~~--~~i   81 (178)
T TIGR00730        13 GNAAYKELAAELGAY-----LAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGE----VVHQNLT--ELI   81 (178)
T ss_pred             CCcHHHHHHHHHHHH-----HHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhh----ccCCCCC--ceE
Confidence            456665 58999999     999965566666669999999999999999999999853 2222    3599997  567


Q ss_pred             ecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHH
Q 028080           82 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE  161 (214)
Q Consensus        82 ~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~  161 (214)
                      .+++|++||..|++.|        ||||+||||+|||+|++++|+|.|++.+    +||++++|++|||+++++|+++++
T Consensus        82 ~~~~~~~Rk~~m~~~s--------da~I~lPGG~GTL~El~e~~~~~qlg~~----~kPiil~n~~g~~~~l~~~l~~~~  149 (178)
T TIGR00730        82 EVNGMHERKAMMAELA--------DAFIAMPGGFGTLEELFEVLTWAQLGIH----QKPIILFNVNGHFDGLVEWLKYSI  149 (178)
T ss_pred             EECCHHHHHHHHHHhC--------CEEEEcCCCcchHHHHHHHHHHHHcCCC----CCCEEEECCcchHHHHHHHHHHHH
Confidence            8899999999999987        9999999999999999999999999874    799999999999999999999999


Q ss_pred             HcCCCChhhhcccEEEeCCHHHHHHHHHhh
Q 028080          162 DWGTVAKDEVASLWKICDSNSEALSYLAEF  191 (214)
Q Consensus       162 ~~gfi~~~~~~~~i~~~~s~ee~~~~l~~~  191 (214)
                      ++||+++++ .+.+.+++|++|++++|++|
T Consensus       150 ~~gfi~~~~-~~~~~~~d~~~e~~~~i~~~  178 (178)
T TIGR00730       150 QEGFISESH-LKLIHVVSRPDELIEQVQNY  178 (178)
T ss_pred             HCCCCCHHH-cCcEEEcCCHHHHHHHHHhC
Confidence            999999975 58899999999999999764

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.

>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]

Probab=100.00  E-value=7.7e-40  Score=276.70  Aligned_cols=167  Identities=32%  Similarity=0.459  Sum_probs=147.0

Q ss_pred             CcH-HHHHHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCccceee
Q 028080            4 DHP-HYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLT   82 (214)
Q Consensus         4 ~~~-~y~~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i~   82 (214)
                      .++ .|+.|++||++     ||++| ++|||||++|+|||+|+||+++||.||||+|..... ..  ++|++++  .+++
T Consensus        28 ~~~~~~~~a~~lg~~-----la~~g-~~V~tGG~~GiMea~~~gA~~~gg~~vGi~p~~~~~-~e--~~~~~~~--~l~~   96 (205)
T COG1611          28 EPEEYYELARELGRE-----LAKRG-LLVITGGGPGVMEAVARGALEAGGLVVGILPGLLHE-QE--PPNYEVI--ELIT   96 (205)
T ss_pred             CCHHHHHHHHHHHHH-----HHhCC-cEEEeCCchhhhhHHHHHHHHcCCeEEEecCCCchh-hc--cCccccc--eeee
Confidence            444 67789999999     99994 999999999999999999999999999999966432 11  2455554  5788


Q ss_pred             cCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHH-hHH
Q 028080           83 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLG-DCE  161 (214)
Q Consensus        83 ~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~-~~~  161 (214)
                      +.+|++||..|.++|        ||||++|||+||++|+|++|+|.|++.+.  ..+|+++++.++||+++.++++ +++
T Consensus        97 ~~~~~~Rk~~~~~~a--------da~V~~pGG~GTleEl~e~lt~~q~g~~~--l~~~~~i~~~~~~~~~~~~~~d~~~i  166 (205)
T COG1611          97 GMDFAERKRAMVRSA--------DAFIVLPGGFGTLEELFEALTLGQTGVHA--LTPPPLILNGNGFWEPLLEFLDPHLI  166 (205)
T ss_pred             cCCHHHHHHHHHHhC--------CEEEEeCCCcchHHHHHHHHHHhhCCccc--CCCCcEEecchHHHHHHHHHhCHHHH
Confidence            899999999999997        99999999999999999999999998863  2678888999999999999999 899


Q ss_pred             HcCCCChhhhcccEEEeCCHHHHHHHHHhhh
Q 028080          162 DWGTVAKDEVASLWKICDSNSEALSYLAEFY  192 (214)
Q Consensus       162 ~~gfi~~~~~~~~i~~~~s~ee~~~~l~~~~  192 (214)
                      .+++++++ ..+++++++|++++++.+.+++
T Consensus       167 ~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~  196 (205)
T COG1611         167 VEGLISEA-DRELLIVVDDAEEAIDAILKYL  196 (205)
T ss_pred             HhhcCChh-hhhheeeecCHHHHHHHHHHhc
Confidence            99999986 5688999999999999999985

>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway

Probab=100.00  E-value=3.1e-38  Score=250.10  Aligned_cols=132  Identities=39%  Similarity=0.604  Sum_probs=117.0

Q ss_pred             HHHHHHHHHhcCCcEEEEecCCccc-ccccCCCCCCCCccceeecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCH
Q 028080           40 MDAVTKGAMQAGKPVGGFKVGKEAG-EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL  118 (214)
Q Consensus        40 M~ava~ga~~~gG~viGIi~~~e~~-e~~~~~~n~~l~~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTL  118 (214)
                      |||+|+||+++||.|+||+|..... +   +.+|++++  .++++++|++||..|++.|        ||||+||||+|||
T Consensus         1 M~a~~~ga~~~gG~viGi~p~~~~~~~---~~~~~~~~--~~~~~~~~~~Rk~~m~~~s--------da~I~lPGG~GTl   67 (133)
T PF03641_consen    1 MGAVAKGAKEAGGRVIGIIPEFLFPFE---EPPNPYVT--ELIIVDDMFERKEIMIESS--------DAFIALPGGIGTL   67 (133)
T ss_dssp             HHHHHHHHHHTTTTEEEEEETTGTTTT---TTCCTTSS--EEEEESSHHHHHHHHHHHE--------SEEEEES-SHHHH
T ss_pred             CcHHHHHHHHcCCeEEEEecCcccccc---ccCCcccC--ceeEeCChHHHHHHHHHhC--------CEEEEEecCCchH
Confidence            9999999999999999999864322 2   23699997  5788899999999999997        9999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeCCHHHHHHHH
Q 028080          119 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL  188 (214)
Q Consensus       119 eEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~~~l  188 (214)
                      +|+|++|+|.|++.+   .++|+||+|.+|||+++++++++++++||+++++. +++.+++|++|++++|
T Consensus        68 ~El~~~~~~~~l~~~---~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~-~~~~~~d~~~e~~~~i  133 (133)
T PF03641_consen   68 DELFEALTLMQLGRH---NKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDL-DLLHFVDDPEEALEYI  133 (133)
T ss_dssp             HHHHHHHHHHHTTSS---TS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHH-CCEEEESSHHHHHHHH
T ss_pred             HHHHHHHHHHhhccc---cCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHC-CeEEEeCCHHHHHhhC
Confidence            999999999999876   34599999999999999999999999999999754 7999999999999975

It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....

>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1

Probab=100.00  E-value=1.4e-35  Score=241.84  Aligned_cols=146  Identities=26%  Similarity=0.304  Sum_probs=121.7

Q ss_pred             CcHHHHH-HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCccceee
Q 028080            4 DHPHYLQ-SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLT   82 (214)
Q Consensus         4 ~~~~y~~-A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i~   82 (214)
                      .+|.|.+ |++||++     ||++| +.|++||+.|+|++++++|+++||.||||+|....      ..|++++  ..+.
T Consensus        12 ~~~~~~~~A~~lg~~-----La~~g-~~lv~Gg~~GlM~a~a~ga~~~gg~viGVlp~~l~------~~~~~~~--~~i~   77 (159)
T TIGR00725        12 KSEELYEIAYRLGKE-----LAKKG-HILINGGRTGVMEAVSKGAREAGGLVVGILPDEDF------AGNPYLT--IKVK   77 (159)
T ss_pred             CChHHHHHHHHHHHH-----HHHCC-CEEEcCCchhHHHHHHHHHHHCCCeEEEECChhhc------cCCCCce--EEEE
Confidence            3667775 7999999     99995 67888999999999999999999999999985321      2488876  4556


Q ss_pred             cCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHH
Q 028080           83 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCED  162 (214)
Q Consensus        83 ~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~  162 (214)
                      +..+++||++|+++|        ||||++|||+|||+|+|++|++          +||++++|.+|||+++++++  +. 
T Consensus        78 ~~~~~~Rk~~m~~~s--------da~IvlpGG~GTL~E~~~a~~~----------~kpv~~l~~~g~~~~~l~~~--~~-  136 (159)
T TIGR00725        78 TGMNFARNFILVRSA--------DVVVSVGGGYGTAIEILGAYAL----------GGPVVVLRGTGGWTDRLSQV--LI-  136 (159)
T ss_pred             CCCcchHHHHHHHHC--------CEEEEcCCchhHHHHHHHHHHc----------CCCEEEEECCCcchHHHHHH--Hh-
Confidence            566689999999997        9999999999999999999983          68999999999999998864  44 


Q ss_pred             cCCCChhhhcccEEEeCCHHHHHHHH
Q 028080          163 WGTVAKDEVASLWKICDSNSEALSYL  188 (214)
Q Consensus       163 ~gfi~~~~~~~~i~~~~s~ee~~~~l  188 (214)
                      +++..+    +.+.+++|+||+++.+
T Consensus       137 ~~~~~~----~~~~~~~~~~e~~~~~  158 (159)
T TIGR00725       137 EGVYLD----ERVIVEITPAEAVKLA  158 (159)
T ss_pred             cccccc----ceeEecCCHHHHHHhh
Confidence            444443    2588999999999864

This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.

>TIGR00732 dprA DNA protecting protein DprA

Probab=98.96  E-value=2.7e-08  Score=85.24  Aligned_cols=142  Identities=16%  Similarity=0.076  Sum_probs=98.7

Q ss_pred             HHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecC-Cc---ccc-------cccC---CCCCCC
Q 028080           10 QSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGE-------WTAS---NFHPYL   75 (214)
Q Consensus        10 ~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~-~e---~~e-------~~~~---~~n~~l   75 (214)
                      .|++|++.     |+++ ++.|++|+.-|++.++.++|+++||.+|+|++. +.   +.+       ....   -..+|-
T Consensus        62 ~a~~l~~~-----l~~~-g~~IVSG~A~GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~~i~~~gglliSe~p  135 (220)
T TIGR00732        62 WTRKLAEE-----LAKN-GVTIVSGLALGIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGLLLSEYP  135 (220)
T ss_pred             HHHHHHHH-----HHhC-CCEEEcCchhhHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHHHHHHcCCEEEEecC
Confidence            37899999     9998 688999999999999999999999999999863 21   110       0000   011222


Q ss_pred             CccceeecCchHHHHHHhHhhhhhcCCCCccEEEEeCCC--CCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHH
Q 028080           76 PLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGG--VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKL  153 (214)
Q Consensus        76 ~~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG--~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l  153 (214)
                      +. ....-..|..|+.++..+|        |++|++-.+  .||+.+.-.++.+          +|||+.+-. ..+++.
T Consensus       136 ~~-~~~~~~~f~~RNriia~ls--------~~vivve~~~~sGtl~ta~~A~~~----------gr~v~~~pg-~~~~~~  195 (220)
T TIGR00732       136 PD-TKPIKYNFPKRNRIISGLS--------RAVLVVEAPLKSGALITARYALEQ----------GREVFAYPG-DLNSPE  195 (220)
T ss_pred             CC-CCCCcccHHHHHHHHHHhc--------CEEEEEECCCCCchHHHHHHHHHh----------CCcEEEEcC-CCCCcc
Confidence            21 1111245789999999987        999999987  7999887655553          689998843 455555


Q ss_pred             HHHHHhHHHcCCCChhhhcccEEEeCCHHHHHHH
Q 028080          154 LDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY  187 (214)
Q Consensus       154 ~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~~~  187 (214)
                      -+--..++++|.          ..+.+++|+++.
T Consensus       196 ~~G~~~Li~~GA----------~~i~~~~d~~~~  219 (220)
T TIGR00732       196 SDGCHKLIEQGA----------ALITSAKDILET  219 (220)
T ss_pred             chHHHHHHHCCC----------EEECCHHHHHHh
Confidence            555566776662          245677777664

Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.

>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins

Probab=98.06  E-value=6.1e-05  Score=64.17  Aligned_cols=128  Identities=21%  Similarity=0.185  Sum_probs=72.9

Q ss_pred             HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecC-Cc---cccc-------ccC---CCCCCCC
Q 028080           11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGEW-------TAS---NFHPYLP   76 (214)
Q Consensus        11 A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~-~e---~~e~-------~~~---~~n~~l~   76 (214)
                      |++|++.     |+++ ++.|++|+-.|+-.++.++|+++||.+|.|++. ++   |.+.       ...   -.++|.+
T Consensus        63 a~~l~~~-----l~~~-g~~vvSGlA~GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~~~i~~~~glliSe~~p  136 (212)
T PF02481_consen   63 AKKLARE-----LAKA-GIVVVSGLAKGIDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELAERILDEGGLLISEYPP  136 (212)
T ss_dssp             HHHHHHH-----HHHH-T-EEEE---TTHHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHHHHHHHTT-EEEE-S-T
T ss_pred             HHHHHHH-----HhhC-CEEEEcCCCCCHHHHHHHHHHHccCCEEEEECCCcccccchhhHHHHHHHHhcCcEEEeCCCC
Confidence            6899999     9998 789999999999999999999999999999862 21   1110       000   0122222


Q ss_pred             ccceeecCchHHHHHHhHhhhhhcCCCCccEEEEeC--CCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHH
Q 028080           77 LETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALP--GGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLL  154 (214)
Q Consensus        77 ~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lP--GG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~  154 (214)
                       +.......|.+|+.++..+|        |++|+.-  =..||+.-+-.++.+          +|||+.+. ...+++..
T Consensus       137 -~~~~~~~~f~~RNRiiaaLs--------~~~vvvea~~~sGt~~ta~~A~~~----------gr~v~~vp-~~~~~~~~  196 (212)
T PF02481_consen  137 -GTKPSRWRFPERNRIIAALS--------DAVVVVEAGEKSGTLHTARFALEQ----------GRPVFAVP-GPIDDPNS  196 (212)
T ss_dssp             -T----TTHHHHHHHHHHHH---------S-EEE----TT-THHHHHHHHHHH----------T--EEE-----TT-GGG
T ss_pred             -CCCcccccChHHHHHHHHhC--------CeEEEEecCCCChHHHHHHHHHHc----------CCeEEEEe-CCCCCccc
Confidence             11223356889999999987        8888875  456788776655544          57998874 45677666


Q ss_pred             HHHHhHHHcC
Q 028080          155 DFLGDCEDWG  164 (214)
Q Consensus       155 ~~l~~~~~~g  164 (214)
                      +.-..++++|
T Consensus       197 ~G~~~Li~~G  206 (212)
T PF02481_consen  197 EGNNELIKEG  206 (212)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            6666777776

In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.

>PRK10736 hypothetical protein; Provisional

Probab=97.25  E-value=0.012  Score=54.43  Aligned_cols=144  Identities=16%  Similarity=0.052  Sum_probs=95.6

Q ss_pred             HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEec-CCc---ccc-------ccc---CCCCCCCC
Q 028080           11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKV-GKE---AGE-------WTA---SNFHPYLP   76 (214)
Q Consensus        11 A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~-~~e---~~e-------~~~---~~~n~~l~   76 (214)
                      ++++++.     ||++ ++.|++|+--|+=.++.++|+++||.+|+|+. .+.   |.+       ...   --.++|-+
T Consensus       126 ~~~l~~~-----la~~-g~~IVSGlA~GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~~I~~~~G~liSEyp~  199 (374)
T PRK10736        126 GRLFCEE-----LAKN-GLTITSGLARGIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLAESIIEQGGALVSEFPL  199 (374)
T ss_pred             HHHHHHH-----HHHC-CCEEECcchhhHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHHHHHHhcCCEEEECCCC
Confidence            6899999     9998 68899999999999999999999999999974 111   110       000   00112211


Q ss_pred             ccceeecCchHHHHHHhHhhhhhcCCCCccEEEEeC--CCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHH
Q 028080           77 LETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALP--GGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLL  154 (214)
Q Consensus        77 ~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lP--GG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~  154 (214)
                       .......+|..|+.++.-+|        +++|+.-  =-.|||.=.-.++.          .+|+|+.+- ...+++.-
T Consensus       200 -~~~p~~~~Fp~RNRIIagLS--------~~viVvEA~~kSGsliTA~~Al~----------~gR~VfavP-G~i~~~~s  259 (374)
T PRK10736        200 -DTPPLAANFPRRNRIISGLS--------KGVLVVEAALRSGSLVTARCALE----------QGRDVFALP-GPIGNPGS  259 (374)
T ss_pred             -CCCCChhhhhHhhhHHHHhC--------CeEEEEEeCCCCchHHHHHHHHH----------hCCeEEEEc-CCCCCccc
Confidence             00111257899999999887        8888775  34567654433333          268998873 34556555


Q ss_pred             HHHHhHHHcCCCChhhhcccEEEeCCHHHHHHHHHh
Q 028080          155 DFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE  190 (214)
Q Consensus       155 ~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~~~l~~  190 (214)
                      +-..+++++|.          ..+.+++|+++.+..
T Consensus       260 ~G~n~LI~~GA----------~lv~~~~Di~~~l~~  285 (374)
T PRK10736        260 EGPHWLIKQGA----------YLVTSPEDILENLQF  285 (374)
T ss_pred             hhHHHHHHCCC----------EEeCCHHHHHHHhhh
Confidence            55566766551          357788999888853

>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]

Probab=96.30  E-value=0.11  Score=47.63  Aligned_cols=145  Identities=19%  Similarity=0.137  Sum_probs=92.0

Q ss_pred             HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecC-Cc---ccc-------cccC--CCCCCCCc
Q 028080           11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGE-------WTAS--NFHPYLPL   77 (214)
Q Consensus        11 A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~-~e---~~e-------~~~~--~~n~~l~~   77 (214)
                      ++.|++.     |+++ ++.|++|+-.|+=.++.++|++++|.+|+|+.. ++   |.+       ....  -.++|.+.
T Consensus       130 ~~~~a~~-----L~~~-g~~IvSGlA~GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~~i~~~g~liSEypp~  203 (350)
T COG0758         130 TRDLAEY-----LAQN-GITIVSGLARGIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAEKIAENGLLISEYPPD  203 (350)
T ss_pred             HHHHHHH-----HHhC-CeEEEecCcceecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHHHHHhcCeEEeecCCC
Confidence            6899999     9998 688999999999999999999999999999741 11   000       0000  01234331


Q ss_pred             cceeecCchHHHHHHhHhhhhhcCCCCccEEEEeCCC--CCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHH
Q 028080           78 ETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGG--VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD  155 (214)
Q Consensus        78 e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG--~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~  155 (214)
                       ......+|..|+++..-+|        +++|+.-.+  .|+|-=.-.++..          .+.|+.+-. ...++.-+
T Consensus       204 -~~p~~~~Fp~RNRiIagLS--------~gvlVvEA~~kSGSLiTA~~Aleq----------gR~VfavPg-~~~~~~s~  263 (350)
T COG0758         204 -TEPNKGNFPRRNRLIAGLS--------DGVLVVEAGLKSGSLITAKYALEQ----------GRDVFAVPG-SIDNPRSE  263 (350)
T ss_pred             -CCcccccchHHHHHHHHhc--------CceEEEecCcccccHHHHHHHHHc----------CCeeEEcCC-Cccccccc
Confidence             1222357899999998887        988888665  5777655444443          456665533 33444333


Q ss_pred             HHHhHHHcCCCChhhhcccEEEeCCHHHHHHHHHhh
Q 028080          156 FLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF  191 (214)
Q Consensus       156 ~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~~~l~~~  191 (214)
                      --..++++|-          ..+.+.+++++.+...
T Consensus       264 G~~~LI~~GA----------~lv~~~~dil~~l~~~  289 (350)
T COG0758         264 GCNKLIKEGA----------KLVTSAEDILEELNAL  289 (350)
T ss_pred             chHHHHHccc----------hhcccHHHHHHHhhhh
Confidence            3344566562          1344556666666543

>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices

Probab=93.60  E-value=1  Score=36.40  Aligned_cols=98  Identities=17%  Similarity=0.139  Sum_probs=49.5

Q ss_pred             EEecCcccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCccceeecCchHHHHHHhHhhhhhcCCCCccEEEE
Q 028080           31 TWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVA  110 (214)
Q Consensus        31 V~~GG~~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~  110 (214)
                      |++||-.|+=.|+-+.|+++|-..-|-.|.--..|+.. -+..|--  ......+...|....+.-|        |+-++
T Consensus         1 IiSGGQTGvDRAALDaAi~~gi~~GGWcP~GR~aEDG~-ip~~Y~L--~E~~~~~Y~~RT~~NV~Ds--------DgTlI   69 (145)
T PF12694_consen    1 IISGGQTGVDRAALDAAIAHGIPHGGWCPKGRRAEDGP-IPARYPL--QETPSSGYRQRTEWNVRDS--------DGTLI   69 (145)
T ss_dssp             EE----TTHHHHHHHHHHHTT--EE-EE-GGG--TTSS---TTS----EE-SS--HHHHHHHHHHTS--------SEEEE
T ss_pred             CccCccccHHHHHHHHHHHcCCCccCcCCCCcccccCc-CCccccc--eecCCCCHHHHHHhhhhhc--------CeEEE
Confidence            68999999999999999999988888887422222211 1233321  1234467789999988876        99888


Q ss_pred             eCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcC
Q 028080          111 LPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY  146 (214)
Q Consensus       111 lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~  146 (214)
                      |-=|.  |.- -..+|..-=.+    +.||+.+++.
T Consensus        70 ~~~g~--l~G-Gt~lT~~~a~~----~~KP~l~i~~   98 (145)
T PF12694_consen   70 FTRGE--LTG-GTALTVEFARK----HGKPCLHIDL   98 (145)
T ss_dssp             EESSS----H-HHHHHHHHHHH----TT--EEEETS
T ss_pred             EecCC--CCc-HHHHHHHHHHH----hCCCEEEEec
Confidence            87443  221 01222221122    4799998865

The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=92.02  E-value=0.26  Score=37.22  Aligned_cols=44  Identities=27%  Similarity=0.212  Sum_probs=34.4

Q ss_pred             hHHHHHHhHhhhhhcCCCCccEEEEeCCC----CCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCC
Q 028080           86 FSARKHGLIDCAVRNDSCDRTAVVALPGG----VGTLDEMFEILALIQLERIGSELPVPFLVMNYD  147 (214)
Q Consensus        86 m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG----~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~  147 (214)
                      ..+|....++.|        |++|+...+    .||.-|+..+..+          +|||+++..+
T Consensus        51 i~~~d~~~i~~~--------D~via~l~~~~~d~Gt~~ElG~A~al----------gkpv~~~~~d   98 (113)
T PF05014_consen   51 IFERDLEGIREC--------DIVIANLDGFRPDSGTAFELGYAYAL----------GKPVILLTED   98 (113)
T ss_dssp             HHHHHHHHHHHS--------SEEEEEECSSS--HHHHHHHHHHHHT----------TSEEEEEECC
T ss_pred             HHHHHHHHHHHC--------CEEEEECCCCCCCCcHHHHHHHHHHC----------CCEEEEEEcC
Confidence            456666666665        999998877    9999999877664          6899999764

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>PRK10565 putative carbohydrate kinase; Provisional

Probab=87.90  E-value=4  Score=39.18  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCc
Q 028080          106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS  148 (214)
Q Consensus       106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g  148 (214)
                      |++++=|| .|+-++..+++...  ..    .++|+ +++.++
T Consensus       322 ~a~viGpG-lg~~~~~~~~~~~~--~~----~~~P~-VLDAda  356 (508)
T PRK10565        322 DVVVIGPG-LGQQEWGKKALQKV--EN----FRKPM-LWDADA  356 (508)
T ss_pred             CEEEEeCC-CCCCHHHHHHHHHH--Hh----cCCCE-EEEchH
Confidence            98888886 78866655444322  11    36787 556655

>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1

Probab=83.25  E-value=21  Score=30.88  Aligned_cols=64  Identities=22%  Similarity=0.214  Sum_probs=39.0

Q ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEE-eCCHHHH
Q 028080          106 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKI-CDSNSEA  184 (214)
Q Consensus       106 Da~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~-~~s~ee~  184 (214)
                      |++|.- ||.+|+.|.   +++          .||++++-..++++.... -+.+.+.|....      +.. .-+++.+
T Consensus       252 d~vIs~-~G~~t~~Ea---~~~----------g~P~l~ip~~~~~EQ~~~-a~~l~~~G~~~~------~~~~~~~~~~l  310 (318)
T PF13528_consen  252 DLVISK-GGYTTISEA---LAL----------GKPALVIPRPGQDEQEYN-ARKLEELGLGIV------LSQEDLTPERL  310 (318)
T ss_pred             CEEEEC-CCHHHHHHH---HHc----------CCCEEEEeCCCCchHHHH-HHHHHHCCCeEE------cccccCCHHHH
Confidence            866655 889998885   333          689999877666766543 133444443211      111 1267888


Q ss_pred             HHHHHh
Q 028080          185 LSYLAE  190 (214)
Q Consensus       185 ~~~l~~  190 (214)
                      .++|++
T Consensus       311 ~~~l~~  316 (318)
T PF13528_consen  311 AEFLER  316 (318)
T ss_pred             HHHHhc
Confidence            887765

>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=81.78  E-value=5.4  Score=42.39  Aligned_cols=54  Identities=20%  Similarity=0.316  Sum_probs=40.0

Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHh-HHHcCCCCh
Q 028080          107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAK  168 (214)
Q Consensus       107 a~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~-~~~~gfi~~  168 (214)
                      .++++.||.+|+.=+.+..+..        ++.|+++....|==.+++++... ..+.|+++.
T Consensus       271 vc~v~eGg~nti~~I~~~v~~~--------~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~  325 (1381)
T KOG3614|consen  271 VCLVLEGGPNTLAIILDYVTDK--------PPIPVVVCAGSGRAADILAFAHEEHGAPGILSD  325 (1381)
T ss_pred             EEEEecCCchHHHHHHHHhccC--------CCCceEEEcCCchHHHHHHHHHHhhcCCCcccH
Confidence            6889999999987766554431        57899999888888888888765 455566554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	214
1wek_A	217	Crystal Structure Of The Conserved Hypothetical Pro		9e-07
2a33_A	215	X-Ray Structure Of A Lysine Decarboxylase-Like Prot		8e-04

>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1465 From Thermus Thermophilus Hb8 Length = 217

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 41  DAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETY-LTCRFFSARKHGLIDCAVR 99
           +AV +GA +AG    G  VG           +PY   +T+ L+ R+F  RK   +  AV 
Sbjct: 82  EAVNRGAYEAG----GVSVGLNIELPHEQKPNPY---QTHALSLRYFFVRKVLFVRYAV- 133
Query: 100 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 159
                    V LPGG GTLDE+ E+L L+Q E++    PV  L   Y   ++ L+ +L  
Sbjct: 134 -------GFVFLPGGFGTLDELSEVLVLLQTEKV-HRFPVFLLDRGY---WEGLVRWLAF 182
Query: 160 CEDWGTVAKDEVASLWKICDSNSEALSYL 188
             D   V  +++  L+++ D   E +  L
Sbjct: 183 LRDQKAVGPEDL-QLFRLTDEPEEVVQAL 210

>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At2g37210 Length = 215

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 107 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 166
           A +ALPGG GTL+E+ E++   QL         P  ++N D +Y  LL F+    + G +
Sbjct: 112 AFIALPGGYGTLEELLEVITWAQL----GIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFI 167
Query: 167 A 167
           +
Sbjct: 168 S 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
1wek_A	217	Hypothetical protein TT1465; rossman fold, structu	3e-32
1weh_A	171	Conserved hypothetical protein TT1887; rossman fol	3e-26
1rcu_A	195	Conserved hypothetical protein VT76; structural ge	2e-21
3gh1_A	462	Predicted nucleotide-binding protein; structural g	1e-20
3bq9_A	460	Predicted rossmann fold nucleotide-binding domain	7e-18
2iz6_A	176	Molybdenum cofactor carrier protein; metal transpo	1e-17
1t35_A	191	Hypothetical protein YVDD, putative lysine decarbo	1e-16
3sbx_A	189	Putative uncharacterized protein; structural genom	1e-16
1ydh_A	216	AT5G11950; structural genomics, protein structure	1e-16
2a33_A	215	Hypothetical protein; structural genomics, protein	3e-16
3qua_A	199	Putative uncharacterized protein; structural genom	5e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Length = 217

 Score =  115 bits (290), Expect = 3e-32
 Identities = 57/199 (28%), Positives = 85/199 (42%), Gaps = 41/199 (20%)

Query: 2   GPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGK 61
           G  HP Y   + LG   R L  A     T   G GPG+M+AV +GA +AG    G     
Sbjct: 49  GEGHPAYEAGYRLG---RALAEAGFGVVT---GGGPGVMEAVNRGAYEAGGVSVGL---- 98

Query: 62  EAGEWTASNFHPYLPLE----TYLT----CRFFSARKHGLIDCAVRNDSCDRTAVVALPG 113
                     +  LP E     Y T     R+F  RK   +  AV          V LPG
Sbjct: 99  ----------NIELPHEQKPNPYQTHALSLRYFFVRKVLFVRYAV--------GFVFLPG 140

Query: 114 GVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVAS 173
           G GTLDE+ E+L L+Q E++      P  +++   +++ L+ +L    D   V  +++  
Sbjct: 141 GFGTLDELSEVLVLLQTEKVH---RFPVFLLD-RGYWEGLVRWLAFLRDQKAVGPEDL-Q 195

Query: 174 LWKICDSNSEALSYLAEFY 192
           L+++ D   E +  L    
Sbjct: 196 LFRLTDEPEEVVQALKAEA 214

>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Length = 171

 Score = 98.4 bits (246), Expect = 3e-26
 Identities = 40/196 (20%), Positives = 60/196 (30%), Gaps = 43/196 (21%)

Query: 2   GPDHPHYLQSFELGGE-ARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK-- 58
            P+ P Y +    G   A               G   G M+A+ +G    G  V G    
Sbjct: 13  SPEDPLYARWVRYGEVLAEE-------GFGLACGGYQGGMEALARGVKAKGGLVVGVTAP 65

Query: 59  ---VGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGV 115
                +          +P++ LE  L       R   L+D             +ALPGGV
Sbjct: 66  AFFPERRGP-------NPFVDLE--LPAATLPQRIGRLLDLGA--------GYLALPGGV 108

Query: 116 GTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLW 175
           GTL E+     L+ L R           +  D ++  LL   G           E   L 
Sbjct: 109 GTLAELVLAWNLLYLRRG------VGRPLAVDPYWLGLLKAHG-------EIAPEDVGLL 155

Query: 176 KICDSNSEALSYLAEF 191
           ++     +   +L   
Sbjct: 156 RVVADEEDLRRFLRSL 171

>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Length = 195

 Score = 86.2 bits (214), Expect = 2e-21
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 35/190 (18%)

Query: 3   PDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 62
           P         ELG       +A+      ++G   G+M+ V++G  +AG  V G    +E
Sbjct: 39  PVSELRDICLELGRT-----LAKK-GYLVFNGGRDGVMELVSQGVREAGGTVVGILPDEE 92

Query: 63  AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 122
           AG       +PYL +       F   R   L+  A          VV++ G +GT  E+ 
Sbjct: 93  AG-------NPYLSVAVKTGLDFQ-MRSFVLLRNAD--------VVVSIGGEIGTAIEIL 136

Query: 123 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 182
              AL +          P +++     +   +  +    D   +    +        +  
Sbjct: 137 GAYALGK----------PVILLRGTGGWTDRISQV--LIDGKYLDNRRI-VEIHQAWTVE 183

Query: 183 EALSYLAEFY 192
           EA+  + +  
Sbjct: 184 EAVQIIEQIL 193

>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Length = 462

 Score = 88.1 bits (218), Expect = 1e-20
 Identities = 37/197 (18%), Positives = 72/197 (36%), Gaps = 29/197 (14%)

Query: 4   DHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAG---KPVGGFKVG 60
           +   Y  + E+G     L +  L  CT   G GPG M+   KGA       +      +G
Sbjct: 159 NEVEYQYTREVG---HELGLRELNICT---GCGPGAMEGPMKGAAVGHAKQRYSEYRYLG 212

Query: 61  KEAGEWTASNF-HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 119
                  A+   +P +     +       R    +  A          ++  PGG GT +
Sbjct: 213 LTEPSIIAAEPPNPIVNE--LVIMPDIEKRLEAFVRMAH--------GIIIFPGGPGTAE 262

Query: 120 EMFEILALIQLERIGSELPVPFLVM---NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWK 176
           E+  IL ++      ++ P+P ++      +++++ L  F+ D     T+ +        
Sbjct: 263 ELLYILGIMMHPEN-ADQPMPIVLTGPKQSEAYFRSLDKFITD-----TLGEAARKHYSI 316

Query: 177 ICDSNSEALSYLAEFYD 193
             D+ +EA   ++    
Sbjct: 317 AIDNPAEAARIMSNAMP 333

>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Length = 460

 Score = 80.4 bits (198), Expect = 7e-18
 Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 29/197 (14%)

Query: 4   DHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKP---VGGFKVG 60
           +   Y  + ++G    H+ +  L  CT   G GPG M    KGA          GG  +G
Sbjct: 157 NEIEYKYTKDVG---YHIGLRGLNICT---GCGPGAMKGPMKGATIGHAKQRVEGGRYLG 210

Query: 61  -KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 119
             E G   A   +P +     +       R    + CA          +V  PGG GT +
Sbjct: 211 LTEPGIIAAEPPNPIVNEL--VILPDIEKRLEAFVRCAH--------GIVIFPGGAGTAE 260

Query: 120 EMFEILALIQLERIGSELPVPFLVM---NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWK 176
           E+  +L ++          +P ++    +   +++ L +F+G      T+  +       
Sbjct: 261 ELLYLLGILMHPD-NQRQSLPVILTGPASSRDYFEALDEFIG-----ATIGDEARQLYKI 314

Query: 177 ICDSNSEALSYLAEFYD 193
           I D  +    ++     
Sbjct: 315 IIDDPAAVAQHMHAGMA 331

>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Length = 176

 Score = 76.1 bits (188), Expect = 1e-17
 Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 49/194 (25%)

Query: 2   GPDHPHYLQSFELG---GEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 58
                  + + ELG             LL      G   G+M    KGA +AG    G  
Sbjct: 25  DTAENQLVMANELGKQIATHGW----ILL----TGGRSLGVMHEAMKGAKEAGGTTIGVL 76

Query: 59  VGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 118
            G +  E         +  +  +     SAR +          S +   +VA+  G GT 
Sbjct: 77  PGPDTSE-----ISDAV--DIPIVTGLGSARDNINAL------SSN--VLVAVGMGPGTA 121

Query: 119 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKIC 178
            E+   L              P +++      +K    L                L  + 
Sbjct: 122 AEVALALK----------AKKPVVLLGTQPEAEKFFTSLDA-------------GLVHVA 158

Query: 179 DSNSEALSYLAEFY 192
              + A++ + +  
Sbjct: 159 ADVAGAIAAVKQLL 172

>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Length = 191

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 26/162 (16%)

Query: 34  GAGPGLMDAVTKGAMQAGKPVGG----FKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 89
           G+  GLM  +    M+ G    G         E      +                   R
Sbjct: 40  GSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELI---------EVNGMHER 90

Query: 90  KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 149
           K  + + A      D    +++PGG GT +E+FE+L   Q+         P  + N + +
Sbjct: 91  KAKMSELA------D--GFISMPGGFGTYEELFEVLCWAQIGIHQK----PIGLYNVNGY 138

Query: 150 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 191
           ++ ++  +      G  + +    L        E +  +  +
Sbjct: 139 FEPMMKMVKYSIQEG-FSNESHLKLIHSSSRPDELIEQMQNY 179

>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Length = 189

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 36/160 (22%), Positives = 54/160 (33%), Gaps = 26/160 (16%)

Query: 34  GAGPGLMDAVTKGAMQAGKPVGG----FKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 89
           G     M AV+  A   G    G      V +E  +  A                    R
Sbjct: 51  GGHVSAMGAVSSAARAHGGWTVGVIPKMLVHRELADHDADELV---------VTETMWER 101

Query: 90  KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 149
           K  + D A      +  A + LPGGVGTLDE+ ++     L           +V++    
Sbjct: 102 KQVMEDRA------N--AFITLPGGVGTLDELLDVWTEGYLGMHDK----SIVVLDPWGH 149

Query: 150 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLA 189
           +  L  +L +  D G V          + D+  +AL   A
Sbjct: 150 FDGLRAWLSELADTGYV-SRTAMERLIVVDNLDDALQACA 188

>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Length = 216

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 26/162 (16%)

Query: 34  GAGPGLMDAVTKGAMQAGKPVGG----FKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 89
           G   GLM  +++   + G  V G      +  E    T  +                  R
Sbjct: 48  GGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVR---------VVADMHER 98

Query: 90  KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 149
           K  +   A      +  A +ALPGG GT++E+ E++   QL            ++N D +
Sbjct: 99  KAAMAQEA------E--AFIALPGGYGTMEELLEMITWSQLGIHKK----TVGLLNVDGY 146

Query: 150 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 191
           Y  LL       + G + K    ++     +  E +  + E+
Sbjct: 147 YNNLLALFDTGVEEGFI-KPGARNIVVSAPTAKELMEKMEEY 187

>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Length = 215

 Score = 73.2 bits (180), Expect = 3e-16
 Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 26/162 (16%)

Query: 34  GAGPGLMDAVTKGAMQAGKPVGG----FKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 89
           G   GLM  V++     G+ V G      + +E    T                     R
Sbjct: 52  GGSIGLMGLVSQAVHDGGRHVIGIIPKTLMPRELTGETVGEVR---------AVADMHQR 102

Query: 90  KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 149
           K  +   +      D  A +ALPGG GTL+E+ E++   QL         P  ++N D +
Sbjct: 103 KAEMAKHS------D--AFIALPGGYGTLEELLEVITWAQLGIHDK----PVGLLNVDGY 150

Query: 150 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 191
           Y  LL F+    + G +       +     +  E +  L E+
Sbjct: 151 YNSLLSFIDKAVEEGFI-SPTAREIIVSAPTAKELVKKLEEY 191

>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Length = 199

 Score = 72.3 bits (178), Expect = 5e-16
 Identities = 37/160 (23%), Positives = 53/160 (33%), Gaps = 26/160 (16%)

Query: 34  GAGPGLMDAVTKGAMQAGKPVGG----FKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 89
           G     M AV + A   G    G      V +E  +  A+                   R
Sbjct: 60  GGNVSAMGAVAQAARAKGGHTVGVIPKALVHRELADVDAAELI---------VTDTMRER 110

Query: 90  KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 149
           K  +   +      D  A +ALPGG+GTL+E FE      L         P ++++    
Sbjct: 111 KREMEHRS------D--AFIALPGGIGTLEEFFEAWTAGYLGMHDK----PLILLDPFGH 158

Query: 150 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLA 189
           Y  LL +L      G V          + D+   AL   A
Sbjct: 159 YDGLLTWLRGLVPTGYV-SQRAMDSLVVVDNVEAALEACA 197

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 5e-05
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 13/129 (10%)

Query: 81  LTCR-FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPV 139
           L+C+   + R   + D  +   +    ++      + T DE+  +L    L+    +LP 
Sbjct: 264 LSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMTL-TPDEVKSLLLKY-LDCRPQDLPR 320

Query: 140 ------PFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 193
                 P  +       + + D L   ++W  V  D++ ++ +   +  E   Y   F  
Sbjct: 321 EVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 194 LSSIDKRVH 202
           LS      H
Sbjct: 378 LSVFPPSAH 386

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
3sbx_A	189	Putative uncharacterized protein; structural genom	100.0
3qua_A	199	Putative uncharacterized protein; structural genom	100.0
1t35_A	191	Hypothetical protein YVDD, putative lysine decarbo	100.0
1ydh_A	216	AT5G11950; structural genomics, protein structure	100.0
2a33_A	215	Hypothetical protein; structural genomics, protein	100.0
1wek_A	217	Hypothetical protein TT1465; rossman fold, structu	100.0
1weh_A	171	Conserved hypothetical protein TT1887; rossman fol	100.0
3gh1_A	462	Predicted nucleotide-binding protein; structural g	100.0
3bq9_A	460	Predicted rossmann fold nucleotide-binding domain	100.0
1rcu_A	195	Conserved hypothetical protein VT76; structural ge	100.0
2iz6_A	176	Molybdenum cofactor carrier protein; metal transpo	100.0
3maj_A	382	DNA processing chain A; MCSG, PSI-2, structural ge	98.21
3uqz_A	288	DNA processing protein DPRA; SAM and rossmann fold	97.69
3imk_A	158	Putative molybdenum carrier protein; YP_461806.1,	96.13
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	93.32
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	92.8
2nx2_A	181	Hypothetical protein YPSA; structural genomics, un	92.69
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	92.66
2o6l_A	170	UDP-glucuronosyltransferase 2B7; drug metabolism,	91.11
1f8y_A	157	Nucleoside 2-deoxyribosyltransferase; active site,	87.04

>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}

Probab=100.00  E-value=6.7e-48  Score=320.96  Aligned_cols=161  Identities=26%  Similarity=0.267  Sum_probs=141.7

Q ss_pred             CcHHHH-HHHHHHhhhhHHHHHhcCCcEEEecCc-ccHHHHHHHHHHhcCCcEEEEecCC-cccccccCCCCCCCCccce
Q 028080            4 DHPHYL-QSFELGGEARHLQIARLLDCTTWSGAG-PGLMDAVTKGAMQAGKPVGGFKVGK-EAGEWTASNFHPYLPLETY   80 (214)
Q Consensus         4 ~~~~y~-~A~~LG~~~~~~~lA~~~~~~V~~GG~-~GlM~ava~ga~~~gG~viGIi~~~-e~~e~~~~~~n~~l~~e~~   80 (214)
                      .+|.|. .|++||++     ||++| +.|++||+ .|+|+|+|+||+++||.||||+|.. +..+    .+|+|++  .+
T Consensus        25 ~~~~~~~~A~~lg~~-----la~~g-~~lv~GGG~~GlM~a~~~ga~~~GG~viGv~p~~l~~~e----~~~~~~~--~~   92 (189)
T 3sbx_A           25 THPELLELAGAVGAA-----IAARG-WTLVWGGGHVSAMGAVSSAARAHGGWTVGVIPKMLVHRE----LADHDAD--EL   92 (189)
T ss_dssp             CCHHHHHHHHHHHHH-----HHHTT-CEEEECCBCSHHHHHHHHHHHTTTCCEEEEEETTTTTTT----TBCTTCS--EE
T ss_pred             CChHHHHHHHHHHHH-----HHHCC-CEEEECCCccCHHHHHHHHHHHcCCcEEEEcCchhhhcc----cCCCCCC--ee
Confidence            456665 58999999     99995 55555555 5999999999999999999999963 3222    3699997  57


Q ss_pred             eecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhH
Q 028080           81 LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC  160 (214)
Q Consensus        81 i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~  160 (214)
                      +++++|++||..|+++|        ||||+||||+|||||+||+|||.|+++|    +|||+|+|.+|||++|++|++++
T Consensus        93 i~~~~~~~Rk~~m~~~s--------da~IalPGG~GTLdElfe~lt~~qlg~~----~kPvvlln~~gfw~~l~~~l~~~  160 (189)
T 3sbx_A           93 VVTETMWERKQVMEDRA--------NAFITLPGGVGTLDELLDVWTEGYLGMH----DKSIVVLDPWGHFDGLRAWLSEL  160 (189)
T ss_dssp             EEESSHHHHHHHHHHHC--------SEEEECSCCHHHHHHHHHHHHHHHTTSC----CCCEEEECTTCTTHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHC--------CEEEEeCCCcchHHHHHHHHHHHHhccc----CCCEEEecCCccchHHHHHHHHH
Confidence            88899999999999997        9999999999999999999999999864    79999999999999999999999


Q ss_pred             HHcCCCChhhhcccEEEeCCHHHHHHHHH
Q 028080          161 EDWGTVAKDEVASLWKICDSNSEALSYLA  189 (214)
Q Consensus       161 ~~~gfi~~~~~~~~i~~~~s~ee~~~~l~  189 (214)
                      +++||+++++ .+++.+++|+||+++.|+
T Consensus       161 ~~~Gfi~~~~-~~~i~~~d~~ee~~~~l~  188 (189)
T 3sbx_A          161 ADTGYVSRTA-MERLIVVDNLDDALQACA  188 (189)
T ss_dssp             HHTTSSCHHH-HHHEEEESSHHHHHHHHC
T ss_pred             HHCCCCCHHH-cCeEEEeCCHHHHHHHhc
Confidence            9999999975 588999999999999874

>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}

Probab=100.00  E-value=1.2e-46  Score=315.75  Aligned_cols=162  Identities=27%  Similarity=0.303  Sum_probs=142.0

Q ss_pred             CcHHHH-HHHHHHhhhhHHHHHhcCCcEEEecCc-ccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCcccee
Q 028080            4 DHPHYL-QSFELGGEARHLQIARLLDCTTWSGAG-PGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYL   81 (214)
Q Consensus         4 ~~~~y~-~A~~LG~~~~~~~lA~~~~~~V~~GG~-~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i   81 (214)
                      .+|.|. .|++||++     ||++| +.|++||+ .|+|+|+++||+++||.||||+|.....   .+.+|++++  .++
T Consensus        34 ~~~~~~~~A~~lg~~-----La~~g-~~lV~GGG~~GlM~a~~~gA~~~GG~viGv~p~~l~~---~e~~~~~~~--~~i  102 (199)
T 3qua_A           34 THPELLELAAEVGSS-----IAARG-WTLVSGGGNVSAMGAVAQAARAKGGHTVGVIPKALVH---RELADVDAA--ELI  102 (199)
T ss_dssp             CCHHHHHHHHHHHHH-----HHHTT-CEEEECCBCSHHHHHHHHHHHHTTCCEEEEEEGGGTT---TTTBCTTSS--EEE
T ss_pred             CCHHHHHHHHHHHHH-----HHHCC-CEEEECCCccCHHHHHHHHHHHcCCcEEEEeCchhhh---ccccCCCCC--eeE
Confidence            466765 58999999     99995 55555555 5999999999999999999999864221   123699997  578


Q ss_pred             ecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHH
Q 028080           82 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE  161 (214)
Q Consensus        82 ~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~  161 (214)
                      ++++|++||..|+++|        ||||+||||+|||||+||+|||.|+++|    +|||+|+|.+|||+++++|+++|+
T Consensus       103 ~~~~~~~Rk~~m~~~s--------da~IalPGG~GTldEl~e~lt~~qlg~~----~kPvvlln~~gfw~~l~~~l~~~~  170 (199)
T 3qua_A          103 VTDTMRERKREMEHRS--------DAFIALPGGIGTLEEFFEAWTAGYLGMH----DKPLILLDPFGHYDGLLTWLRGLV  170 (199)
T ss_dssp             EESSHHHHHHHHHHHC--------SEEEECSCCHHHHHHHHHHHHHHHTTSC----CCCEEEECTTSTTHHHHHHHHHTT
T ss_pred             EcCCHHHHHHHHHHhc--------CccEEeCCCccHHHHHHHHHHHHHhccC----CCCEEEEcCCccchHHHHHHHHHH
Confidence            8899999999999997        9999999999999999999999999864    799999999999999999999999


Q ss_pred             HcCCCChhhhcccEEEeCCHHHHHHHHH
Q 028080          162 DWGTVAKDEVASLWKICDSNSEALSYLA  189 (214)
Q Consensus       162 ~~gfi~~~~~~~~i~~~~s~ee~~~~l~  189 (214)
                      ++||+++++ .+++.+++|+||+++.|+
T Consensus       171 ~~Gfi~~~~-~~~i~~~d~~~e~~~~l~  197 (199)
T 3qua_A          171 PTGYVSQRA-MDSLVVVDNVEAALEACA  197 (199)
T ss_dssp             TTTSSCHHH-HHTSEEESSHHHHHHHHS
T ss_pred             HCCCCCHHH-CCeEEEeCCHHHHHHHHh
Confidence            999999975 588999999999999986

>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1

Probab=100.00  E-value=1.1e-46  Score=314.06  Aligned_cols=172  Identities=22%  Similarity=0.326  Sum_probs=142.8

Q ss_pred             cHHHH-HHHHHHhhhhHHHHHhcCCcEEEecCc-ccHHHHHHHHHHhcCCcEEEEecCC-cccccccCCCCCCCCcccee
Q 028080            5 HPHYL-QSFELGGEARHLQIARLLDCTTWSGAG-PGLMDAVTKGAMQAGKPVGGFKVGK-EAGEWTASNFHPYLPLETYL   81 (214)
Q Consensus         5 ~~~y~-~A~~LG~~~~~~~lA~~~~~~V~~GG~-~GlM~ava~ga~~~gG~viGIi~~~-e~~e~~~~~~n~~l~~e~~i   81 (214)
                      +|.|. .|++||++     ||++| +.|++||+ .|+|+|+++||+++||.||||+|.. ...+    .+|++++  ..+
T Consensus        15 ~~~~~~~A~~lg~~-----La~~g-~~lV~GGg~~GiM~aa~~gA~~~gG~~iGv~p~~l~~~e----~~~~~~~--~~~   82 (191)
T 1t35_A           15 NEAYKRKAAELGVY-----MAEQG-IGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGE----VVHQNLT--ELI   82 (191)
T ss_dssp             STHHHHHHHHHHHH-----HHHTT-CEEEECCCCSHHHHHHHHHHHTTTCCEEEEEETTCCHHH----HTTCCCS--EEE
T ss_pred             ChHHHHHHHHHHHH-----HHHCC-CEEEECCCcccHHHHHHHHHHHcCCeEEEEeCchhcccc----cccCCCC--ccc
Confidence            45554 58999999     99995 66666666 5999999999999999999999853 2222    2588887  467


Q ss_pred             ecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHH
Q 028080           82 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE  161 (214)
Q Consensus        82 ~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~  161 (214)
                      .+.+|++||.+|.++|        ||||+||||+|||||+||+|||.|+++|    +|||+|+|.++||+++++|+++|+
T Consensus        83 ~~~~~~~Rk~~~~~~s--------da~IvlPGG~GTl~El~e~lt~~q~g~~----~kPvvll~~~g~~~~l~~~l~~~~  150 (191)
T 1t35_A           83 EVNGMHERKAKMSELA--------DGFISMPGGFGTYEELFEVLCWAQIGIH----QKPIGLYNVNGYFEPMMKMVKYSI  150 (191)
T ss_dssp             EESHHHHHHHHHHHHC--------SEEEECSCCHHHHHHHHHHHHTTSCSSC----CCCEEEECGGGTTHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHC--------CEEEEeCCCccHHHHHHHHHHHHHhCCC----CCCEEEecCCcccchHHHHHHHHH
Confidence            7899999999999997        9999999999999999999999999874    799999999999999999999999


Q ss_pred             HcCCCChhhhcccEEEeCCHHHHHHHHHhhhcCCCcc-ccccc
Q 028080          162 DWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID-KRVHE  203 (214)
Q Consensus       162 ~~gfi~~~~~~~~i~~~~s~ee~~~~l~~~~~~~~~~-~~~~~  203 (214)
                      ++||+++++ .+++.+++|+||+++.|++|.  |+.. ++|.+
T Consensus       151 ~~Gfi~~~~-~~~~~~~~~~~e~~~~l~~~~--~~~~~~~~~~  190 (191)
T 1t35_A          151 QEGFSNESH-LKLIHSSSRPDELIEQMQNYS--YPILEKKWTE  190 (191)
T ss_dssp             HTTSSCTTH-HHHEEEESSHHHHHHHHHTC-------------
T ss_pred             HCCCCCHHH-cCeEEEeCCHHHHHHHHHHhc--CCcccccccc
Confidence            999999975 478999999999999999983  4444 55644

>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A

Probab=100.00  E-value=2e-45  Score=311.85  Aligned_cols=165  Identities=21%  Similarity=0.305  Sum_probs=140.4

Q ss_pred             CcHHHH-HHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecC-CcccccccCCCCCCCCcccee
Q 028080            4 DHPHYL-QSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KEAGEWTASNFHPYLPLETYL   81 (214)
Q Consensus         4 ~~~~y~-~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~-~e~~e~~~~~~n~~l~~e~~i   81 (214)
                      .++.|. .|++||++     ||++|..+|+|||.+|+|+|+++||+++||.||||+|. +.+.|..   .|++ +  .++
T Consensus        22 ~~~~~~~~A~~lg~~-----LA~~g~~lV~GGg~~GlM~aa~~gA~~~GG~~iGv~p~~l~~~e~~---~~~~-~--~~~   90 (216)
T 1ydh_A           22 HREVFSDAAIELGNE-----LVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEIS---GETV-G--DVR   90 (216)
T ss_dssp             SSHHHHHHHHHHHHH-----HHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCC---SSCC-S--EEE
T ss_pred             CCcHHHHHHHHHHHH-----HHHCCCEEEECCCcccHhHHHHHHHHHcCCcEEEEechhcCccccc---cCCC-C--ccc
Confidence            345555 58999999     99996444444444699999999999999999999985 3233332   2444 3  356


Q ss_pred             ecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHH
Q 028080           82 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE  161 (214)
Q Consensus        82 ~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~  161 (214)
                      ++++|++||.+|+++|        ||||+||||+|||||+||+|||.|+++    ++|||+|+|++|||+++++|+++|+
T Consensus        91 ~~~~~~~Rk~~~~~~s--------da~I~lpGG~GTLdElfE~lt~~qlg~----~~kPvvll~~~gfw~~l~~~l~~~~  158 (216)
T 1ydh_A           91 VVADMHERKAAMAQEA--------EAFIALPGGYGTMEELLEMITWSQLGI----HKKTVGLLNVDGYYNNLLALFDTGV  158 (216)
T ss_dssp             EESSHHHHHHHHHHHC--------SEEEECSCSHHHHHHHHHHHHHHHHTS----CCCEEEEECGGGTTHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHhC--------CEEEEeCCCccHHHHHHHHHHHHHhcc----cCCCEEEecCCccchHHHHHHHHHH
Confidence            6799999999999997        999999999999999999999999985    4899999999999999999999999


Q ss_pred             HcCCCChhhhcccEEEeCCHHHHHHHHHhhh
Q 028080          162 DWGTVAKDEVASLWKICDSNSEALSYLAEFY  192 (214)
Q Consensus       162 ~~gfi~~~~~~~~i~~~~s~ee~~~~l~~~~  192 (214)
                      ++||+++++ .+++.+++|+||+++.|++|+
T Consensus       159 ~~Gfi~~~~-~~~~~~~d~~ee~~~~l~~~~  188 (216)
T 1ydh_A          159 EEGFIKPGA-RNIVVSAPTAKELMEKMEEYT  188 (216)
T ss_dssp             HTTSSCHHH-HTTEEEESSHHHHHHHHHHCC
T ss_pred             HCCCCChHH-cCeEEEeCCHHHHHHHHHHhc
Confidence            999999975 588999999999999999875

>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A

Probab=100.00  E-value=2.9e-44  Score=304.50  Aligned_cols=165  Identities=24%  Similarity=0.369  Sum_probs=137.2

Q ss_pred             CcHHHH-HHHHHHhhhhHHHHHhcCCcEEEecCc-ccHHHHHHHHHHhcCCcEEEEecCC-cccccccCCCCCCCCccce
Q 028080            4 DHPHYL-QSFELGGEARHLQIARLLDCTTWSGAG-PGLMDAVTKGAMQAGKPVGGFKVGK-EAGEWTASNFHPYLPLETY   80 (214)
Q Consensus         4 ~~~~y~-~A~~LG~~~~~~~lA~~~~~~V~~GG~-~GlM~ava~ga~~~gG~viGIi~~~-e~~e~~~~~~n~~l~~e~~   80 (214)
                      .++.|. .|++||++     ||++| +.|++||+ +|+|+|+++||+++||.||||+|.. ...+.    .++.++  .+
T Consensus        26 ~~~~y~~~A~~lg~~-----LA~~G-~~vVsGGg~~GiM~aa~~gAl~~GG~tiGVlP~~~~~~e~----~~~~~~--~~   93 (215)
T 2a33_A           26 KKSSYQDAAVDLGNE-----LVSRN-IDLVYGGGSIGLMGLVSQAVHDGGRHVIGIIPKTLMPREL----TGETVG--EV   93 (215)
T ss_dssp             SSHHHHHHHHHHHHH-----HHHTT-CEEEECCCSSHHHHHHHHHHHHTTCCEEEEEESSCC------------CC--EE
T ss_pred             CchHHHHHHHHHHHH-----HHHCC-CEEEECCChhhHhHHHHHHHHHcCCcEEEEcchHhcchhh----ccCCCC--ce
Confidence            456565 58999999     99995 66666666 5999999999999999999999853 22222    244444  35


Q ss_pred             eecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhH
Q 028080           81 LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC  160 (214)
Q Consensus        81 i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~  160 (214)
                      +++++|++||.+|.++|        |+||++|||+|||||+||+|||.|++.    ++|||+|+|.+|||++|++|++++
T Consensus        94 ~~~~~f~~Rk~~~~~~s--------da~VvlpGG~GTLdElfE~lt~~qlg~----~~kPvvll~~~g~w~~l~~~l~~~  161 (215)
T 2a33_A           94 RAVADMHQRKAEMAKHS--------DAFIALPGGYGTLEELLEVITWAQLGI----HDKPVGLLNVDGYYNSLLSFIDKA  161 (215)
T ss_dssp             EEESSHHHHHHHHHHTC--------SEEEECSCCHHHHHHHHHHHHHHHTTS----CCCCEEEECGGGTTHHHHHHHHHH
T ss_pred             eecCCHHHHHHHHHHhC--------CEEEEeCCCCchHHHHHHHHHHHHhCC----CCCCeEEecCcchhHHHHHHHHHH
Confidence            67799999999999987        999999999999999999999999986    489999999999999999999999


Q ss_pred             HHcCCCChhhhcccEEEeCCHHHHHHHHHhhhc
Q 028080          161 EDWGTVAKDEVASLWKICDSNSEALSYLAEFYD  193 (214)
Q Consensus       161 ~~~gfi~~~~~~~~i~~~~s~ee~~~~l~~~~~  193 (214)
                      +++||+++++ .+++.+++|++|+++.|++|++
T Consensus       162 ~~~Gfi~~~~-~~~~~~~d~~ee~~~~l~~~~~  193 (215)
T 2a33_A          162 VEEGFISPTA-REIIVSAPTAKELVKKLEEYAP  193 (215)
T ss_dssp             HHHTSSCHHH-HTTEEEESSHHHHHHHHHC---
T ss_pred             HHcCCCCHHH-CCeEEEeCCHHHHHHHHHHhcC
Confidence            9999999975 5889999999999999999863

>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1

Probab=100.00  E-value=7.9e-44  Score=302.23  Aligned_cols=163  Identities=31%  Similarity=0.542  Sum_probs=142.2

Q ss_pred             cHHHHHHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCccceeecC
Q 028080            5 HPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR   84 (214)
Q Consensus         5 ~~~y~~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i~~~   84 (214)
                      ++.|+.|++||++     ||++| +.|++||++|+|+|+++||+++||.||||+|.++..    +.+|++++  ..+++.
T Consensus        52 ~~~~~~A~~lg~~-----La~~g-~~lVsGGg~GiM~aa~~gAl~~gG~~iGV~~~~P~~----~~~~~~~t--~~~~~~  119 (217)
T 1wek_A           52 HPAYEAGYRLGRA-----LAEAG-FGVVTGGGPGVMEAVNRGAYEAGGVSVGLNIELPHE----QKPNPYQT--HALSLR  119 (217)
T ss_dssp             SHHHHHHHHHHHH-----HHHHT-CEEEECSCSHHHHHHHHHHHHTTCCEEEEEECCTTC----CCCCSCCS--EEEEES
T ss_pred             cHHHHHHHHHHHH-----HHHCC-CEEEeCChhhHHHHHHHHHHHcCCCEEEEeeCCcch----hhccccCC--cCcccC
Confidence            3455568999999     99994 666667779999999999999999999998765322    24699997  467789


Q ss_pred             chHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcC
Q 028080           85 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWG  164 (214)
Q Consensus        85 ~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~g  164 (214)
                      +|++||.+|.++|        ||||++|||+|||+|+|++|+|.|++++   ++|||+++|. +||+++++|+++++++|
T Consensus       120 ~f~~Rk~~m~~~s--------da~IvlpGG~GTL~El~e~lt~~qlg~~---~~kPvvll~~-~~w~~l~~~l~~~~~~G  187 (217)
T 1wek_A          120 YFFVRKVLFVRYA--------VGFVFLPGGFGTLDELSEVLVLLQTEKV---HRFPVFLLDR-GYWEGLVRWLAFLRDQK  187 (217)
T ss_dssp             CHHHHHHHHHHTE--------EEEEECSCCHHHHHHHHHHHHHHHTTSS---CCCCEEEECH-HHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhC--------CEEEEeCCCCcHHHHHHHHHHHHhhCCC---CCCCEEEeCc-ccchhHHHHHHHHHHCC
Confidence            9999999999997        9999999999999999999999999865   5799999998 69999999999999999


Q ss_pred             CCChhhhcccEEEeCCHHHHHHHHHhhh
Q 028080          165 TVAKDEVASLWKICDSNSEALSYLAEFY  192 (214)
Q Consensus       165 fi~~~~~~~~i~~~~s~ee~~~~l~~~~  192 (214)
                      |+++++ .+++.+++|++|+++.|++|+
T Consensus       188 fi~~~~-~~~~~~~~~~~e~~~~l~~~~  214 (217)
T 1wek_A          188 AVGPED-LQLFRLTDEPEEVVQALKAEA  214 (217)
T ss_dssp             SSCTTG-GGGSEEESCHHHHHHHHHC--
T ss_pred             CCCHHH-cCeEEEeCCHHHHHHHHHHhc
Confidence            999975 478899999999999999985

>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1

Probab=100.00  E-value=9.2e-42  Score=279.80  Aligned_cols=153  Identities=25%  Similarity=0.392  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecC-CcccccccCCCCCCCCccceeecC
Q 028080            6 PHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KEAGEWTASNFHPYLPLETYLTCR   84 (214)
Q Consensus         6 ~~y~~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~-~e~~e~~~~~~n~~l~~e~~i~~~   84 (214)
                      +.|+.|++||++     ||++ ++.|++||++|+|+|+++||+++||.||||+|. +-+.+   +.+|++++  ..+.+.
T Consensus        17 ~~~~~A~~lg~~-----La~~-g~~lV~Ggg~GiM~aa~~gAl~~gG~tiGV~~~~~~p~e---~~~~~~~~--~~~~~~   85 (171)
T 1weh_A           17 PLYARWVRYGEV-----LAEE-GFGLACGGYQGGMEALARGVKAKGGLVVGVTAPAFFPER---RGPNPFVD--LELPAA   85 (171)
T ss_dssp             HHHHHHHHHHHH-----HHHT-TEEEEECCSSTHHHHHHHHHHHTTCCEEECCCGGGCTTS---CSSCTTCS--EECCCS
T ss_pred             HHHHHHHHHHHH-----HHHC-CCEEEeCChhhHHHHHHHHHHHcCCcEEEEeccccCccc---ccccCCCc--eeeecC
Confidence            445568999999     9999 577778888899999999999999999999986 22332   24699997  467789


Q ss_pred             chHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcC
Q 028080           85 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWG  164 (214)
Q Consensus        85 ~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~g  164 (214)
                      +|++||.+|.++|        |+||++|||+|||||+||+|+|.|++++   ++|| +|+|  +||++++      +++|
T Consensus        86 ~f~~Rk~~~~~~s--------da~ivlpGG~GTl~El~e~lt~~q~g~~---~~kP-vll~--g~~~~l~------~~~g  145 (171)
T 1weh_A           86 TLPQRIGRLLDLG--------AGYLALPGGVGTLAELVLAWNLLYLRRG---VGRP-LAVD--PYWLGLL------KAHG  145 (171)
T ss_dssp             SHHHHHHHHHHHE--------EEEEECSCCHHHHHHHHHHHHHHHTCSS---CSCC-EEEC--GGGGGTC------CCBT
T ss_pred             CHHHHHHHHHHhC--------CEEEEeCCCccHHHHHHHHHHHHHhCcc---CCCe-EEEC--cchhhhH------hhcC
Confidence            9999999999997        9999999999999999999999999875   5799 9999  9999987      6789


Q ss_pred             CCChhhhcccEEEeCCHHHHHHHHHh
Q 028080          165 TVAKDEVASLWKICDSNSEALSYLAE  190 (214)
Q Consensus       165 fi~~~~~~~~i~~~~s~ee~~~~l~~  190 (214)
                      |+++++ .+++.+++||+|+++.|++
T Consensus       146 fi~~~~-~~~~~~~~~~~e~~~~l~~  170 (171)
T 1weh_A          146 EIAPED-VGLLRVVADEEDLRRFLRS  170 (171)
T ss_dssp             TBCHHH-HTTSEECCSHHHHHHHHHT
T ss_pred             CCChhh-cCeEEEeCCHHHHHHHHHh
Confidence            999975 5889999999999999875

>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A

Probab=100.00  E-value=3.8e-41  Score=307.83  Aligned_cols=163  Identities=20%  Similarity=0.309  Sum_probs=139.2

Q ss_pred             CcHHHH-HHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhc-------CCcEEEEecC-CcccccccCCCCCC
Q 028080            4 DHPHYL-QSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQA-------GKPVGGFKVG-KEAGEWTASNFHPY   74 (214)
Q Consensus         4 ~~~~y~-~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~-------gG~viGIi~~-~e~~e~~~~~~n~~   74 (214)
                      .+|.|. .|++||++     ||++ ++.|+|||++|+|||+++||..+       ||.||||+|. +...    +.+|+|
T Consensus       158 ~~p~yye~A~eLGr~-----LA~~-G~~LVtGGG~GLMeAa~aGA~~a~a~qr~aGG~vIGIiP~~L~~~----E~~N~~  227 (462)
T 3gh1_A          158 INEVEYQYTREVGHE-----LGLR-ELNICTGCGPGAMEGPMKGAAVGHAKQRYSEYRYLGLTEPSIIAA----EPPNPI  227 (462)
T ss_dssp             CCHHHHHHHHHHHHH-----HHHT-TCEEEECCSSGGGTHHHHHHHHHHHHTTCTTCCEEEEECTTTTTT----SCCCTT
T ss_pred             CCHHHHHHHHHHHHH-----HHHC-CCEEEeCCcHHHHHHHHHHHHHhccccccCCCeEEEEccchhhhh----hccCCC
Confidence            345555 58999999     9999 56666777799999999999886       8999999974 3322    246999


Q ss_pred             CCccceeecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcC---Cccch
Q 028080           75 LPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY---DSFYK  151 (214)
Q Consensus        75 l~~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~---~g~w~  151 (214)
                      ++  .++++++|++||..|++.|        ||||+||||+|||||+||+|||.|++. ++.++|||||+|+   +|||+
T Consensus       228 vt--eliiv~~m~~RK~~mv~~S--------DAfIaLPGG~GTLEELfE~LTw~qLgt-gk~h~kPIVLln~~~~~gYwd  296 (462)
T 3gh1_A          228 VN--ELVIMPDIEKRLEAFVRMA--------HGIIIFPGGPGTAEELLYILGIMMHPE-NADQPMPIVLTGPKQSEAYFR  296 (462)
T ss_dssp             CS--EEEECSSHHHHHHHHHHHC--------SEEEECSCSHHHHHHHHHHHHHHTSGG-GTTCCCCEEEEECGGGHHHHH
T ss_pred             CC--eeEEeCCHHHHHHHHHHHC--------CEEEEcCCCcchHHHHHHHHHHHhccc-CcCCCCCEEEEcCCCcccHHH
Confidence            97  5788899999999999997        999999999999999999999999874 2336899999998   89999


Q ss_pred             HHHHHHHhHHHcCCCChhhhcccEEEeCCHHHHHHHHHhhh
Q 028080          152 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY  192 (214)
Q Consensus       152 ~l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~~~l~~~~  192 (214)
                      +|++|+++++.++.     ..+++.+++|++|+++.|++++
T Consensus       297 ~Ll~fL~~~v~eg~-----~~~~~iv~DdpeEvl~~i~~~~  332 (462)
T 3gh1_A          297 SLDKFITDTLGEAA-----RKHYSIAIDNPAEAARIMSNAM  332 (462)
T ss_dssp             HHHHHHHHHHCGGG-----GGGCEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhh-----hhccEEEcCCHHHHHHHHHHHH
Confidence            99999999987653     4567789999999999999986

>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}

Probab=100.00  E-value=5.4e-40  Score=301.80  Aligned_cols=162  Identities=20%  Similarity=0.317  Sum_probs=138.3

Q ss_pred             CcHHHHHHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhc-------CCcEEEEecCC-cccccccCCCCCCC
Q 028080            4 DHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQA-------GKPVGGFKVGK-EAGEWTASNFHPYL   75 (214)
Q Consensus         4 ~~~~y~~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~-------gG~viGIi~~~-e~~e~~~~~~n~~l   75 (214)
                      ++|.|+.|++||++     ||++ ++.|+|||++|+||++++||..+       ||.||||+|.. ...    +.+|+|+
T Consensus       157 ~~~~Ye~A~eLGr~-----LA~~-G~~LVtGGG~GlMEaa~aGA~~a~s~qr~~GG~vIGIiP~~L~~~----E~~N~~v  226 (460)
T 3bq9_A          157 NEIEYKYTKDVGYH-----IGLR-GLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAA----EPPNPIV  226 (460)
T ss_dssp             CHHHHHHHHHHHHH-----HHHT-TCEEEECCSSGGGTHHHHHHHHHHHHTTCSSCCEEEEECTTTTTT----SCCCTTC
T ss_pred             CCHHHHHHHHHHHH-----HHHC-CCEEEeCCcHHHhhHHHhhHHhhcccccCCCCEEEEEeChhhhhh----hhcCCCC
Confidence            67888789999999     9999 57777888889998888888766       99999999753 222    2469999


Q ss_pred             CccceeecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEc---CCccchH
Q 028080           76 PLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN---YDSFYKK  152 (214)
Q Consensus        76 ~~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln---~~g~w~~  152 (214)
                      +  .++++++|++||..|++.|        ||||+||||+|||||+||+|+|.|++.. +.++|||||+|   ++|||++
T Consensus       227 t--elIiv~~m~eRK~~mv~~S--------DAfIaLPGG~GTLeELfEaLT~~QLg~~-k~~~kPVVLlg~~n~~gywd~  295 (460)
T 3bq9_A          227 N--ELVILPDIEKRLEAFVRCA--------HGIVIFPGGAGTAEELLYLLGILMHPDN-QRQSLPVILTGPASSRDYFEA  295 (460)
T ss_dssp             S--EEEECSSHHHHHHHHHHHC--------SEEEECSCSHHHHHHHHHHHHHHTSGGG-TTCCCCEEEEECGGGHHHHHH
T ss_pred             C--eEEEECCHHHHHHHHHHhC--------CEEEEcCCCcchHHHHHHHHHHHhhccc-cCCCCCEEEEecCCccchhhH
Confidence            7  5788899999999999997        9999999999999999999999999873 33589999997   5899999


Q ss_pred             HHHHHHhHHHcCCCChhhhcccEEEeCCHHHHHHHHHhh
Q 028080          153 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF  191 (214)
Q Consensus       153 l~~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~~~l~~~  191 (214)
                      +++|+++++.+     ++..+++.+++||+|+++.++++
T Consensus       296 Ll~~l~~~l~~-----~~~~~~iiv~ddpeEal~~l~~~  329 (460)
T 3bq9_A          296 LDEFIGATIGD-----EARQLYKIIIDDPAAVAQHMHAG  329 (460)
T ss_dssp             HHHHHHHHTCT-----TGGGGCEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcc-----hhhcCcEEEeCCHHHHHHHHHHH
Confidence            99999998765     23556778999999999998765

>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1

Probab=100.00  E-value=2.2e-37  Score=258.75  Aligned_cols=153  Identities=22%  Similarity=0.279  Sum_probs=130.7

Q ss_pred             CCcHHHHHHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCccceee
Q 028080            3 PDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLT   82 (214)
Q Consensus         3 ~~~~~y~~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i~   82 (214)
                      |+++.|+.|++||++     ||++ ++.|++||++|+|+|+++||+++||.||||+|..       +..|+|.+  ..++
T Consensus        39 ~~~~~~~~A~~lg~~-----LA~~-G~~vVsGg~~GiM~aa~~gAl~~GG~~iGVlP~e-------~~~~~~~~--~~~~  103 (195)
T 1rcu_A           39 PVSELRDICLELGRT-----LAKK-GYLVFNGGRDGVMELVSQGVREAGGTVVGILPDE-------EAGNPYLS--VAVK  103 (195)
T ss_dssp             TTGGGHHHHHHHHHH-----HHHT-TCEEEECCSSHHHHHHHHHHHHTTCCEEEEESTT-------CCCCTTCS--EEEE
T ss_pred             ccHHHHHHHHHHHHH-----HHHC-CCEEEeCCHHHHHHHHHHHHHHcCCcEEEEeCCc-------ccCCCCcc--eeee
Confidence            344666679999999     9999 5777789999999999999999999999999862       12477743  4444


Q ss_pred             c-CchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHH
Q 028080           83 C-RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE  161 (214)
Q Consensus        83 ~-~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~  161 (214)
                      + .+|++||.+|.++|        ||||++|||+|||+|+|++|++          +|||+++|.+|||+++   |++++
T Consensus       104 ~~~~f~~Rk~~m~~~s--------da~IvlpGG~GTL~E~~eal~~----------~kPV~lln~~g~w~~~---l~~~~  162 (195)
T 1rcu_A          104 TGLDFQMRSFVLLRNA--------DVVVSIGGEIGTAIEILGAYAL----------GKPVILLRGTGGWTDR---ISQVL  162 (195)
T ss_dssp             CCCCHHHHHHHHHTTC--------SEEEEESCCHHHHHHHHHHHHT----------TCCEEEETTSCHHHHH---GGGGC
T ss_pred             cCCCHHHHHHHHHHhC--------CEEEEecCCCcHHHHHHHHHhc----------CCCEEEECCCCccHHH---HHHHH
Confidence            3 58999999999987        9999999999999999999883          6899999999999986   46788


Q ss_pred             HcC-CCChhhhcccEEEeCCHHHHHHHHHhhh
Q 028080          162 DWG-TVAKDEVASLWKICDSNSEALSYLAEFY  192 (214)
Q Consensus       162 ~~g-fi~~~~~~~~i~~~~s~ee~~~~l~~~~  192 (214)
                      ++| |+++++ .+++.+++|+||+++.|++|+
T Consensus       163 ~~G~fi~~~~-~~~i~~~~~~ee~~~~l~~~~  193 (195)
T 1rcu_A          163 IDGKYLDNRR-IVEIHQAWTVEEAVQIIEQIL  193 (195)
T ss_dssp             BTTTBSSTTC-CSCEEEESSHHHHHHHHHTC-
T ss_pred             HcCCcCCHHH-cCeEEEeCCHHHHHHHHHHHh
Confidence            888 999864 588999999999999999874

>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A

Probab=100.00  E-value=9e-34  Score=233.46  Aligned_cols=146  Identities=22%  Similarity=0.191  Sum_probs=120.5

Q ss_pred             CcHHHHH-HHHHHhhhhHHHHHhcCCcEEEecCc-ccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCcccee
Q 028080            4 DHPHYLQ-SFELGGEARHLQIARLLDCTTWSGAG-PGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYL   81 (214)
Q Consensus         4 ~~~~y~~-A~~LG~~~~~~~lA~~~~~~V~~GG~-~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i   81 (214)
                      .+|.|.+ |++||++     ||++| +.|++||+ .|+|+|+++||+++||.||||+|... .    +.+|++++  ..+
T Consensus        26 ~~~~~~~~A~~lg~~-----La~~g-~~lVsGGg~~Gim~aa~~gAl~~gG~tigVlP~~~-~----~~~~~~~~--~~i   92 (176)
T 2iz6_A           26 TAENQLVMANELGKQ-----IATHG-WILLTGGRSLGVMHEAMKGAKEAGGTTIGVLPGPD-T----SEISDAVD--IPI   92 (176)
T ss_dssp             CCHHHHHHHHHHHHH-----HHHTT-CEEEEECSSSSHHHHHHHHHHHTTCCEEEEECC----------CCTTCS--EEE
T ss_pred             CCHHHHHHHHHHHHH-----HHHCC-CEEEECCCccCHhHHHHHHHHHcCCEEEEEeCchh-h----hhhccCCc--eeE
Confidence            4566665 8999999     99995 55555555 99999999999999999999998542 1    23699986  467


Q ss_pred             ecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHH
Q 028080           82 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE  161 (214)
Q Consensus        82 ~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~  161 (214)
                      ++.+|++||.+|.++|        |+||++|||+|||+|++++|.          ++|||+++|.   |+         .
T Consensus        93 ~~~~~~~Rk~~m~~~s--------da~IvlpGg~GTL~E~~~al~----------~~kpV~~l~~---~~---------~  142 (176)
T 2iz6_A           93 VTGLGSARDNINALSS--------NVLVAVGMGPGTAAEVALALK----------AKKPVVLLGT---QP---------E  142 (176)
T ss_dssp             ECCCCSSSCCCCGGGC--------SEEEEESCCHHHHHHHHHHHH----------TTCCEEEESC---CH---------H
T ss_pred             EcCCHHHHHHHHHHhC--------CEEEEecCCccHHHHHHHHHH----------hCCcEEEEcC---cc---------c
Confidence            8899999999999987        999999999999999999982          3799999985   76         4


Q ss_pred             HcCCCChhhhcccEEEeCCHHHHHHHHHhhhc
Q 028080          162 DWGTVAKDEVASLWKICDSNSEALSYLAEFYD  193 (214)
Q Consensus       162 ~~gfi~~~~~~~~i~~~~s~ee~~~~l~~~~~  193 (214)
                      ++||++++ ..+.+.+++||+|+++.|++++.
T Consensus       143 ~~gfi~~~-~~~~i~~~~~~~e~~~~l~~~~~  173 (176)
T 2iz6_A          143 AEKFFTSL-DAGLVHVAADVAGAIAAVKQLLA  173 (176)
T ss_dssp             HHHHHHHH-CTTTEEEESSHHHHHHHHHHHHH
T ss_pred             ccccCChh-hcCeEEEcCCHHHHHHHHHHHHH
Confidence            45777775 45789999999999999999863

>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}

Probab=98.21  E-value=3.4e-05  Score=69.92  Aligned_cols=142  Identities=13%  Similarity=0.132  Sum_probs=99.4

Q ss_pred             HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecC-Cc---ccc-------c---ccCCCCCCCC
Q 028080           11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGE-------W---TASNFHPYLP   76 (214)
Q Consensus        11 A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~-~e---~~e-------~---~~~~~n~~l~   76 (214)
                      |++|++.     ||++ ++.|++|+--|+..++.++|+++|  +|+|+.. ++   |.+       .   ..--.++|-+
T Consensus       146 a~~l~~~-----La~~-g~~VVSGlA~GID~~AH~~AL~~g--TIaVLg~Gld~~YP~~n~~L~~~I~~~~G~liSE~pp  217 (382)
T 3maj_A          146 AGQLAAD-----LGAA-GFVVISGLARGIDQAAHRASLSSG--TVAVLAGGHDKIYPAEHEDLLLDIIQTRGAAISEMPL  217 (382)
T ss_dssp             HHHHHHH-----HHHH-TCEEEECCCTTHHHHHHHHHTTTC--EEEECSSCTTSCSSGGGHHHHHHHHHTTCEEEECSCT
T ss_pred             HHHHHHH-----HHHC-CcEEEeCCccCHHHHHHHHHHhCC--eEEEECCCcCccCCHhhHHHHHHHHHhCCcEEecCCC
Confidence            7899999     9999 688999999999999999999987  9999852 11   111       0   0000112211


Q ss_pred             ccceeecCchHHHHHHhHhhhhhcCCCCccEEEEeCCC--CCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHH
Q 028080           77 LETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGG--VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLL  154 (214)
Q Consensus        77 ~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG--~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~  154 (214)
                       .......+|..|+.++.-+|        +++|+.-.+  .|||...-.++..          ++||+.+- ....++.-
T Consensus       218 -g~~p~~~~Fp~RNRiIagLS--------~~vvVvEA~~kSGsliTA~~Ale~----------gR~VfavP-G~i~~~~s  277 (382)
T 3maj_A          218 -GHVPRGKDFPRRNRLISGAS--------VGVAVIEAAYRSGSLITARRAADQ----------GREVFAVP-GSPLDPRA  277 (382)
T ss_dssp             -TCCCCTTHHHHHHHHHHHHC--------SCEEECCCCTTCTHHHHHHHHHHH----------TCCEEECC-CCTTCGGG
T ss_pred             -CCCCCccccHHHHHHHHHhC--------CceEEEecCCCCcHHHHHHHHHHh----------CCcEEEEc-CCCCCccc
Confidence             01112256899999999887        999998776  7999887766654          57988774 23455555


Q ss_pred             HHHHhHHHcCCCChhhhcccEEEeCCHHHHHHHHHh
Q 028080          155 DFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE  190 (214)
Q Consensus       155 ~~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~~~l~~  190 (214)
                      .-...++++|.          ..+.+++|+++.|..
T Consensus       278 ~G~n~LI~~GA----------~lv~~~~Dil~~l~~  303 (382)
T 3maj_A          278 AGTNDLIKQGA----------TLITSASDIVEAVAS  303 (382)
T ss_dssp             HHHHHHHHTTC----------EECSSHHHHHHHHTT
T ss_pred             ccHHHHHHCCC----------EEECCHHHHHHHhhh
Confidence            55566776662          367899999998864

>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}

Probab=97.69  E-value=0.00072  Score=59.08  Aligned_cols=141  Identities=16%  Similarity=0.082  Sum_probs=93.2

Q ss_pred             HHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecC-Cc---ccccc---------cCCCCCCCCc
Q 028080           11 SFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGEWT---------ASNFHPYLPL   77 (214)
Q Consensus        11 A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~-~e---~~e~~---------~~~~n~~l~~   77 (214)
                      |++|++.     |+ + +++|++|+--|+=.++.++|+++||.+|+|+.. ++   |.+-.         .--.++|-+ 
T Consensus       125 a~~l~~~-----La-~-~~~VVSGlA~GID~~AH~~aL~~~g~TIaVl~~Gld~~YP~~n~~L~~~i~~~GlliSE~pp-  196 (288)
T 3uqz_A          125 VEKVIQG-----LE-N-ELVIVSGLAKGIDTAAHMAALQNGGKTIAVIGTGLDVFYPKANKRLQDYIGNDHLVLSEYGP-  196 (288)
T ss_dssp             HHHHHHT-----TT-T-CSEEEECCCTTHHHHHHHHHHHHTCCEEEECSSCTTCCSSGGGHHHHHHHHHHSEEEESSCT-
T ss_pred             HHHHHHH-----Hh-h-hheEecCcccCHHHHHHHHHHhcCCCEEEEecccccccCchhhHHHHHHhcccCcEeeccCC-
Confidence            6899998     86 4 588999999999999999999999999999752 11   11100         000111111 


Q ss_pred             cceeecCchHHHHHHhHhhhhhcCCCCccEEEEeCCC--CCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHH
Q 028080           78 ETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGG--VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD  155 (214)
Q Consensus        78 e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG--~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~  155 (214)
                      .......+|..|++++.-+|        |++|+.--+  .|||.=.-.++.          .++||+.+- ....++.-+
T Consensus       197 g~~p~~~~Fp~RNRiIagLS--------~~~vVvEA~~~SGsliTA~~Ale----------~gR~VfavP-G~i~~~~s~  257 (288)
T 3uqz_A          197 GEQPLKFHFPARNRIIAGLC--------RGVIVAEAKMRSGSLITCERAME----------EGRDVFAIP-GSILDGLSD  257 (288)
T ss_dssp             TCCCCTTHHHHHHHHHHHHC--------SEEEEESCCTTCHHHHHHHHHHH----------TTCEEEECC-CCSSSSTTH
T ss_pred             CCCccccccHHHHHHHHHcC--------CeEEEEecCCCChHHHHHHHHHH----------cCCeEEEEC-CCCCCccch
Confidence            11112357899999999887        999998765  677654433333          267988763 234455444


Q ss_pred             HHHhHHHcCCCChhhhcccEEEeCCHHHHHHHH
Q 028080          156 FLGDCEDWGTVAKDEVASLWKICDSNSEALSYL  188 (214)
Q Consensus       156 ~l~~~~~~gfi~~~~~~~~i~~~~s~ee~~~~l  188 (214)
                      -...++++|.          ..+.+++|+++.+
T Consensus       258 G~n~LI~~GA----------~lv~~~~Dil~el  280 (288)
T 3uqz_A          258 GCHHLIQEGA----------KLVTSGQDVLAEF  280 (288)
T ss_dssp             HHHHHHHTTC----------EECSSHHHHHHHC
T ss_pred             HHHHHHHCCC----------EEECCHHHHHHHh
Confidence            4556776661          3578899988765

>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}

Probab=96.13  E-value=0.2  Score=39.87  Aligned_cols=102  Identities=18%  Similarity=0.125  Sum_probs=68.6

Q ss_pred             CcEEEecCcccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCccceeecCchHHHHHHhHhhhhhcCCCCccE
Q 028080           28 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTA  107 (214)
Q Consensus        28 ~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i~~~~m~~Rk~~m~~~s~~~~~~~sDa  107 (214)
                      ..-|++||-.|+=.|+-+.|.++|-..-|..|.--..|+.. -+..|--.  ......+..|....++-|        |+
T Consensus         8 ~~kIiSGGQTGvDraALd~A~~~gi~~gGwcP~GR~aEDG~-ip~~Y~L~--E~~~~~y~~Rt~~NV~DS--------Dg   76 (158)
T 3imk_A            8 ITKIISGGQTGADRAALDFAIKHHIPYGGWVPKGRLAEGGR-VPETYQLQ--EMPTSDYSKRTEKNVLDS--------DG   76 (158)
T ss_dssp             CCEEECCCCTTHHHHHHHHHHHTTCCEECEECGGGCCTTSS-CCTTSCCE--ECSSCCHHHHHHHHHHTS--------SE
T ss_pred             ceEEeeCCcchHHHHHHHHHHHcCCCcceecCCCcccccCC-CCcccccc--ccCCCCHHHHHHHhhhhc--------Ce
Confidence            34589999999999999999999988888888421222211 12333221  223466789999998876        99


Q ss_pred             EEEeC-CCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCc
Q 028080          108 VVALP-GGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS  148 (214)
Q Consensus       108 ~I~lP-GG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g  148 (214)
                      .++|- |..-.=.++-..++..        +.||+.+++.+.
T Consensus        77 TLI~~~g~lsGGT~lT~~~a~~--------~~KP~l~i~l~~  110 (158)
T 3imk_A           77 TLIISHGILKGGSALTEFFAEQ--------YKKPCLHIDLDR  110 (158)
T ss_dssp             EEEEESSSCCHHHHHHHHHHHH--------TTCCEEEEETTT
T ss_pred             EEEEecCCCCCchHHHHHHHHH--------hCCCEEEEeccc
Confidence            88887 6553333443333331        479999998754

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=93.32  E-value=0.12  Score=40.82  Aligned_cols=85  Identities=16%  Similarity=0.147  Sum_probs=53.2

Q ss_pred             hHHHHHHhHhhhhhcCCCCccEEEEeCC--CCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHc
Q 028080           86 FSARKHGLIDCAVRNDSCDRTAVVALPG--GVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDW  163 (214)
Q Consensus        86 m~~Rk~~m~~~s~~~~~~~sDa~I~lPG--G~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~  163 (214)
                      ...|...+++.|        |++|++++  ..||.-|+-.+.++          .|||+++..+. ...   -+..|+ +
T Consensus        67 i~~~d~~~i~~a--------D~vva~~~~~d~Gt~~EiGyA~al----------gKPVi~l~~~~-~~~---~~n~M~-~  123 (165)
T 2khz_A           67 IHEQDLNWLQQA--------DVVVAEVTQPSLGVGYELGRAVAL----------GKPILCLFRPQ-SGR---VLSAMI-R  123 (165)
T ss_dssp             HHHHHHHHHHHC--------SEEEEECSSCCHHHHHHHHHHHHT----------CSSEEEEECTT-TTC---CCCHHH-H
T ss_pred             HHHHHHHHHHhC--------CEEEEECCCCCCCHHHHHHHHHHC----------CCEEEEEEcCC-CCC---cchhhh-c
Confidence            356666777776        99999976  57899999876664          68999986543 111   122232 2


Q ss_pred             CCCChhhhcccEEEeCCHHHHHHHHHhhhcCCC
Q 028080          164 GTVAKDEVASLWKICDSNSEALSYLAEFYDLSS  196 (214)
Q Consensus       164 gfi~~~~~~~~i~~~~s~ee~~~~l~~~~~~~~  196 (214)
                      |.-....+ + +... |.+|+.+.|.+|+...+
T Consensus       124 g~~~~~~~-~-~~~y-~~~el~~~l~~~~~~~~  153 (165)
T 2khz_A          124 GAADGSRF-Q-VWDY-AEGEVETMLDRYFEAYL  153 (165)
T ss_dssp             HTCCSSSE-E-EEEC-CTTTHHHHHHHHHHTSC
T ss_pred             ccCcccee-E-EEec-CHHHHHHHHHHHHHhcC
Confidence            32221112 2 2334 88999999998876443

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=92.80  E-value=0.16  Score=40.39  Aligned_cols=87  Identities=21%  Similarity=0.187  Sum_probs=51.9

Q ss_pred             hHHHHHHhHhhhhhcCCCCccEEEEe--C--C---CCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHH
Q 028080           86 FSARKHGLIDCAVRNDSCDRTAVVAL--P--G---GVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLG  158 (214)
Q Consensus        86 m~~Rk~~m~~~s~~~~~~~sDa~I~l--P--G---G~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~  158 (214)
                      ..++....++.|        |++|++  |  |   -.||.-|+-.++++          +|||+++..+  +.++.+...
T Consensus        57 i~~~d~~~i~~a--------D~vVA~ldpf~g~~~D~GTafEiGyA~Al----------gKPVi~l~~d--~r~~~~~~~  116 (161)
T 2f62_A           57 IRQKNIQMIKDC--------DAVIADLSPFRGHEPDCGTAFEVGCAAAL----------NKMVLTFTSD--RRNMREKYG  116 (161)
T ss_dssp             HHHHHHHHHHHC--------SEEEEECCCCSSSSCCHHHHHHHHHHHHT----------TCEEEEECSC--CSCHHHHHT
T ss_pred             HHHHHHHHHHhC--------CEEEEEecCCCCCCCCCcHHHHHHHHHHC----------CCEEEEEEcC--chhhhhhcc
Confidence            455666677776        999999  4  3   46899999877664          6899998753  233222111


Q ss_pred             hH-HHcCCC-----Chhh--hcccEEEeCCHHHHHHHHHhhh
Q 028080          159 DC-EDWGTV-----AKDE--VASLWKICDSNSEALSYLAEFY  192 (214)
Q Consensus       159 ~~-~~~gfi-----~~~~--~~~~i~~~~s~ee~~~~l~~~~  192 (214)
                      .. -++|+.     .+.+  ....+.++++.+++++.|.+++
T Consensus       117 ~~~d~~g~~vedf~~~~NLMl~~~~~~~~~~~~~l~~l~~~~  158 (161)
T 2f62_A          117 SGVDKDNLRVEGFGLPFNLMLYDGVEVFDSFESAFKYFLANF  158 (161)
T ss_dssp             SSBCTTSCBCCCSSCSSCGGGCCSSCEESSHHHHHHHHHHHS
T ss_pred             cccccccccccccCCcchhhhhhhheeeCCHHHHHHHHHHhh
Confidence            10 001110     0000  0111237899999999999874

>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2

Probab=92.69  E-value=3  Score=33.39  Aligned_cols=126  Identities=11%  Similarity=-0.009  Sum_probs=71.6

Q ss_pred             CcHHHHHH-HHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhc-----CCcEEEEecCCcccc-cccCC------
Q 028080            4 DHPHYLQS-FELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQA-----GKPVGGFKVGKEAGE-WTASN------   70 (214)
Q Consensus         4 ~~~~y~~A-~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~-----gG~viGIi~~~e~~e-~~~~~------   70 (214)
                      ++|..... ..|-+.|... + +.|-.-+++||..|+=-.+++.|++.     +.+.+-|+|...... |+...      
T Consensus        21 ~~~~~~~ik~~L~~~l~~l-~-~~G~~~~isgga~G~D~~aae~vl~lk~~y~~i~L~~v~Pf~~~~~~w~~~~~~~y~~   98 (181)
T 2nx2_A           21 DDKALYYIKKAIKNRLIAF-L-DEGLEWILISGQLGVELWAAEAAYDLQEEYPDLKVAVITPFYEQEKNWKEPNKEQYEA   98 (181)
T ss_dssp             CCHHHHHHHHHHHHHHHHH-H-TTTCCEEEECCCTTHHHHHHHHHHTTTTTCTTCEEEEEESSBCTTTTSCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHH-H-hCCCcEEEECCCccHHHHHHHHHHHhccccCCceEEEEecccchhhCCCHHHHHHHHH
Confidence            45555532 2343332111 4 34557899999999999999999983     456666777443211 10000      


Q ss_pred             ---CCCC---CCcccee-ecCchHHHHHHhHhhhhhcCCCCccEEEEeC-CCC--CCHHHHHHHHHHHHhhhhcCCCCcc
Q 028080           71 ---FHPY---LPLETYL-TCRFFSARKHGLIDCAVRNDSCDRTAVVALP-GGV--GTLDEMFEILALIQLERIGSELPVP  140 (214)
Q Consensus        71 ---~n~~---l~~e~~i-~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lP-GG~--GTLeEl~e~lt~~ql~~~~~~~~kP  140 (214)
                         .-++   ++ +... .-..+..|++.|++.|        |+.|++- |..  ||-.=+-.+....+  .    +++|
T Consensus        99 ll~~aD~v~~l~-~~~y~~~~~~~~rn~~mvd~s--------D~liavyDg~~~GgT~~~v~~A~~~~~--~----~~~p  163 (181)
T 2nx2_A           99 VLAQADYEASLT-HRPYESPLQFKQKNQFFIDKS--------DGLLLLYDPEKEGSPKYMLGTAEKRRE--Q----DGYP  163 (181)
T ss_dssp             HHHHCSEEEESS-SSBCCCHHHHHHHHHHHHHHS--------SEEEEECCTTTCCTTHHHHHHHHHHHH--H----HCCC
T ss_pred             HHHhCCeEEecc-cCCCCCHHHHHHHHHHHHHHC--------CEEEEEEcCCCCCCHHHHHHHHHHhcc--c----cCCe
Confidence               0000   00 0000 0123679999999987        9999998 543  67655444433322  1    2689


Q ss_pred             EEEEcC
Q 028080          141 FLVMNY  146 (214)
Q Consensus       141 iilln~  146 (214)
                      +.++++
T Consensus       164 v~~I~~  169 (181)
T 2nx2_A          164 IYFITM  169 (181)
T ss_dssp             EEEECH
T ss_pred             EEEEcH
Confidence            999874

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=92.66  E-value=0.37  Score=38.33  Aligned_cols=83  Identities=18%  Similarity=0.211  Sum_probs=51.2

Q ss_pred             hHHHHHHhHhhhhhcCCCCccEEEEe-CCC---CCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccch------HHHH
Q 028080           86 FSARKHGLIDCAVRNDSCDRTAVVAL-PGG---VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK------KLLD  155 (214)
Q Consensus        86 m~~Rk~~m~~~s~~~~~~~sDa~I~l-PGG---~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~------~l~~  155 (214)
                      ...+....++.|        |++|++ .|.   .||.-|+-.++++          .|||+++.++ +..      ..+.
T Consensus        59 i~~~D~~~i~~a--------D~viA~ldg~~~D~Gt~~EiG~A~a~----------gkPVi~~~~D-~R~~g~~~~~~~~  119 (162)
T 3ehd_A           59 IALADTENVLAS--------DLLVALLDGPTIDAGVASEIGVAYAK----------GIPVVALYTD-SRQQGADNHQKLD  119 (162)
T ss_dssp             HHHHHHHHHHTC--------SEEEEECCSSSCCHHHHHHHHHHHHT----------TCCEEEECCC-GGGCCTTCHHHHH
T ss_pred             HHHHHHHHHHHC--------CEEEEECCCCCCCCCHHHHHHHHHHC----------CCEEEEEEcC-cccccCCcchhhh
Confidence            345555566655        999986 554   8999999877764          6899999753 222      1222


Q ss_pred             HHHhHHHc----------CCCChhhhcccEEEeCCHHHHHHHHHhhh
Q 028080          156 FLGDCEDW----------GTVAKDEVASLWKICDSNSEALSYLAEFY  192 (214)
Q Consensus       156 ~l~~~~~~----------gfi~~~~~~~~i~~~~s~ee~~~~l~~~~  192 (214)
                      .++...+.          |.|..     .=.++.|.+|+++.|.+++
T Consensus       120 ~~~~~~e~~f~~~N~~~~G~i~~-----~g~~~~~~~~~~~~l~~~~  161 (162)
T 3ehd_A          120 ALNEIAENQFHYLNLYTVGLIKL-----NGRVVSSEEDLLEEIKQRL  161 (162)
T ss_dssp             HTTSTTCCCSCCCCHHHHHHHHT-----TEEEESSHHHHHHHHHHTC
T ss_pred             hhHHHhhhhhhhhhHHHhhhHHh-----CCeEEeCHHHHHHHHHHHh
Confidence            12111111          22211     1257899999999999874

>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}

Probab=91.11  E-value=3.9  Score=30.83  Aligned_cols=64  Identities=19%  Similarity=0.275  Sum_probs=37.4

Q ss_pred             ccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCCChhhhcccEEEeC----C
Q 028080          105 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICD----S  180 (214)
Q Consensus       105 sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~----s  180 (214)
                      +|+||. .||.||+.|.   ++.          .+|+|++..  +.+.. ..-+.+.+.|.         -..++    +
T Consensus        87 ad~~I~-~~G~~t~~Ea---~~~----------G~P~i~~p~--~~~Q~-~na~~l~~~g~---------g~~~~~~~~~  140 (170)
T 2o6l_A           87 TRAFIT-HGGANGIYEA---IYH----------GIPMVGIPL--FADQP-DNIAHMKARGA---------AVRVDFNTMS  140 (170)
T ss_dssp             EEEEEE-CCCHHHHHHH---HHH----------TCCEEECCC--STTHH-HHHHHHHTTTS---------EEECCTTTCC
T ss_pred             cCEEEE-cCCccHHHHH---HHc----------CCCEEeccc--hhhHH-HHHHHHHHcCC---------eEEeccccCC
Confidence            387775 7788998884   333          589999864  22321 11122332221         12233    7


Q ss_pred             HHHHHHHHHhhhcC
Q 028080          181 NSEALSYLAEFYDL  194 (214)
Q Consensus       181 ~ee~~~~l~~~~~~  194 (214)
                      ++++.+.|.+.+..
T Consensus       141 ~~~l~~~i~~ll~~  154 (170)
T 2o6l_A          141 STDLLNALKRVIND  154 (170)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcC
Confidence            88998888887643

>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*

Probab=87.04  E-value=0.35  Score=38.10  Aligned_cols=44  Identities=16%  Similarity=-0.038  Sum_probs=33.3

Q ss_pred             HHHHHHhHhhhhhcCCCCccEEEEeCCC----CCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCc
Q 028080           87 SARKHGLIDCAVRNDSCDRTAVVALPGG----VGTLDEMFEILALIQLERIGSELPVPFLVMNYDS  148 (214)
Q Consensus        87 ~~Rk~~m~~~s~~~~~~~sDa~I~lPGG----~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g  148 (214)
                      .++....++.|        |++|++.-|    .||.-|+-.++++          .|||+++..+.
T Consensus        69 ~~~D~~~i~~a--------D~vvA~ldg~~~D~GT~~EiGyA~A~----------gkPVv~~~~~~  116 (157)
T 1f8y_A           69 YNNDLNGIKTN--------DIMLGVYIPDEEDVGLGMELGYALSQ----------GKYVLLVIPDE  116 (157)
T ss_dssp             HHHHHHHHHTS--------SEEEEECCGGGCCHHHHHHHHHHHHT----------TCEEEEEECGG
T ss_pred             HHHhHHHHHhC--------CEEEEEcCCCCCCccHHHHHHHHHHC----------CCeEEEEEcCC
Confidence            45555566655        999999866    8999999877664          68999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d1ydhb_	181	c.129.1.1 (B:) Hypothetical protein At5g11950 {Tha	6e-23
d2q4oa1	183	c.129.1.1 (A:8-190) Hypothetical protein At2g37210	7e-22
d1weka_	208	c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA16	5e-19
d1t35a_	179	c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus	5e-18
d1weha_	171	c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA02	2e-13
d1rcua_	170	c.129.1.1 (A:) Hypothetical protein TM1055 {Thermo	1e-12

>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 181

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.0 bits (220), Expect = 6e-23
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 23/191 (12%)

Query: 1   MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60
            G        + ELG E     + +      + G   GLM  +++   + G  V G    
Sbjct: 13  SGHREVFSDAAIELGNE-----LVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPK 67

Query: 61  KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 120
                  +         +  +       +     +           A +ALPGG GT++E
Sbjct: 68  ALMPIEISGETVG----DVRVVADMHERKAAMAQEA---------EAFIALPGGYGTMEE 114

Query: 121 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 180
           + E++   QL            ++N D +Y  LL       + G + K    ++     +
Sbjct: 115 LLEMITWSQLGIH----KKTVGLLNVDGYYNNLLALFDTGVEEGFI-KPGARNIVVSAPT 169

Query: 181 NSEALSYLAEF 191
             E +  + E+
Sbjct: 170 AKELMEKMEEY 180

>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Length = 208

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1465 (TTHA1644)
species: Thermus thermophilus [TaxId: 274]

 Score = 79.4 bits (195), Expect = 5e-19
 Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 25/188 (13%)

Query: 1   MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60
            G  HP Y   + LG                 +G GPG+M+AV +GA +     GG  VG
Sbjct: 44  FGEGHPAYEAGYRLGRALAEAG------FGVVTGGGPGVMEAVNRGAYE----AGGVSVG 93

Query: 61  KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 120
                      +PY      L+ R+F  RK   +  AV          V LPGG GTLDE
Sbjct: 94  LNIELPHEQKPNPYQT--HALSLRYFFVRKVLFVRYAVG--------FVFLPGGFGTLDE 143

Query: 121 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 180
           + E+L L+Q E++        + +    +++ L+ +L    D   V   E   L+++ D 
Sbjct: 144 LSEVLVLLQTEKV----HRFPVFLLDRGYWEGLVRWLAFLRDQKAV-GPEDLQLFRLTDE 198

Query: 181 NSEALSYL 188
             E +  L
Sbjct: 199 PEEVVQAL 206

>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Length = 179

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]

 Score = 75.9 bits (186), Expect = 5e-18
 Identities = 31/191 (16%), Positives = 61/191 (31%), Gaps = 23/191 (12%)

Query: 1   MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60
            G +  +  ++ ELG       +A       + G+  GLM  +    M+ G    G    
Sbjct: 12  PGGNEAYKRKAAELGVY-----MAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGV--- 63

Query: 61  KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 120
                   S       +   LT        H                 +++PGG GT +E
Sbjct: 64  ------MPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADG----FISMPGGFGTYEE 113

Query: 121 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 180
           +FE+L   Q+         P  + N + +++ ++  +      G   +  +  L      
Sbjct: 114 LFEVLCWAQIGIH----QKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHL-KLIHSSSR 168

Query: 181 NSEALSYLAEF 191
             E +  +  +
Sbjct: 169 PDELIEQMQNY 179

>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1887 (TTHA0294)
species: Thermus thermophilus [TaxId: 274]

 Score = 63.7 bits (154), Expect = 2e-13
 Identities = 37/188 (19%), Positives = 60/188 (31%), Gaps = 31/188 (16%)

Query: 1   MGPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 60
           + P+ P Y +    G       +A         G   G M+A+ +G    G  V G    
Sbjct: 12  LSPEDPLYARWVRYGEV-----LAEE-GFGLACGGYQGGMEALARGVKAKGGLVVGVTAP 65

Query: 61  KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 120
               E    N         ++     +A     I   +   +      +ALPGGVGTL E
Sbjct: 66  AFFPERRGPN--------PFVDLELPAATLPQRIGRLLDLGAGY----LALPGGVGTLAE 113

Query: 121 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 180
           +     L+ L R           +  D ++  LL   G+          E   L ++   
Sbjct: 114 LVLAWNLLYLRRG------VGRPLAVDPYWLGLLKAHGE-------IAPEDVGLLRVVAD 160

Query: 181 NSEALSYL 188
             +   +L
Sbjct: 161 EEDLRRFL 168

>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Length = 170

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TM1055
species: Thermotoga maritima [TaxId: 2336]

 Score = 61.3 bits (148), Expect = 1e-12
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 35/188 (18%)

Query: 3   PDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 62
           P         ELG       +A+      ++G   G+M+ V++G  +AG  V G    +E
Sbjct: 17  PVSELRDICLELGRT-----LAKK-GYLVFNGGRDGVMELVSQGVREAGGTVVGILPDEE 70

Query: 63  AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 122
           AG       +PYL +       F   +    +     +         ++ G +GT  E+ 
Sbjct: 71  AG-------NPYLSVAVKTGLDF---QMRSFVLLRNADVVV------SIGGEIGTAIEIL 114

Query: 123 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 182
              AL +          P +++     +   +  +    D   +    +        +  
Sbjct: 115 GAYALGK----------PVILLRGTGGWTDRISQV--LIDGKYLDNRRI-VEIHQAWTVE 161

Query: 183 EALSYLAE 190
           EA+  + +
Sbjct: 162 EAVQIIEQ 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d1t35a_	179	Hypothetical protein YvdD {Bacillus subtilis [TaxI	100.0
d1ydhb_	181	Hypothetical protein At5g11950 {Thale cress (Arabi	100.0
d2q4oa1	183	Hypothetical protein At2g37210/T2N18.3 {Thale cres	100.0
d1weka_	208	Hypothetical protein TT1465 (TTHA1644) {Thermus th	100.0
d1rcua_	170	Hypothetical protein TM1055 {Thermotoga maritima [	100.0
d1weha_	171	Hypothetical protein TT1887 (TTHA0294) {Thermus th	100.0
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	90.95
d1f8ya_	156	Nucleoside 2-deoxyribosyltransferase {Lactobacillu	88.74
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	87.75
d2nx2a1	177	Hypothetical protein YpsA {Bacillus subtilis [TaxI	83.84

>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=3.3e-48  Score=318.12  Aligned_cols=166  Identities=19%  Similarity=0.294  Sum_probs=145.8

Q ss_pred             CCcHHHHHHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCccceee
Q 028080            3 PDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLT   82 (214)
Q Consensus         3 ~~~~~y~~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i~   82 (214)
                      ++++.|+.|++||++     ||++|..+|||||..|+|+|+++||+++||.++||+|......   +.+|++++  .++.
T Consensus        14 ~~~~~~~~a~~lg~~-----la~~g~~lv~GGG~~GlMga~a~ga~~~gg~v~gv~~~~l~~~---~~~~~~~~--~~~~   83 (179)
T d1t35a_          14 GNEAYKRKAAELGVY-----MAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSG---EVVHQNLT--ELIE   83 (179)
T ss_dssp             SSTHHHHHHHHHHHH-----HHHTTCEEEECCCCSHHHHHHHHHHHTTTCCEEEEEETTCCHH---HHTTCCCS--EEEE
T ss_pred             cCCHHHHHHHHHHHH-----HHHCCCeEEECCCchHHHHHHhcchhhcCCceeccccchhhcc---ccccccce--eeee
Confidence            344455568999999     9999777777777889999999999999999999998532211   13588887  5788


Q ss_pred             cCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHH
Q 028080           83 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCED  162 (214)
Q Consensus        83 ~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~  162 (214)
                      +++|++||..|++.|        ||||+||||+|||||+|++|+|.|++.|    +|||+|+|.+|||++|++|++++++
T Consensus        84 ~~~~~~Rk~~m~~~s--------dafI~lPGG~GTLdEl~e~l~~~ql~~~----~kPiil~n~~gfw~~l~~~l~~~~~  151 (179)
T d1t35a_          84 VNGMHERKAKMSELA--------DGFISMPGGFGTYEELFEVLCWAQIGIH----QKPIGLYNVNGYFEPMMKMVKYSIQ  151 (179)
T ss_dssp             ESHHHHHHHHHHHHC--------SEEEECSCCHHHHHHHHHHHHTTSCSSC----CCCEEEECGGGTTHHHHHHHHHHHH
T ss_pred             eccHHHHHHHHHHhc--------CeEEEecCccchhhHHHHHHHHHHhhcc----CCCeEeecCCccHHHHHHHHHHHHH
Confidence            899999999999997        9999999999999999999999999864    7999999999999999999999999


Q ss_pred             cCCCChhhhcccEEEeCCHHHHHHHHHhh
Q 028080          163 WGTVAKDEVASLWKICDSNSEALSYLAEF  191 (214)
Q Consensus       163 ~gfi~~~~~~~~i~~~~s~ee~~~~l~~~  191 (214)
                      +||+++++ .+++.+++||+|++++|++|
T Consensus       152 ~gfi~~~~-~~~i~~~~~~~e~i~~L~~~  179 (179)
T d1t35a_         152 EGFSNESH-LKLIHSSSRPDELIEQMQNY  179 (179)
T ss_dssp             TTSSCTTH-HHHEEEESSHHHHHHHHHTC
T ss_pred             cCCCChHH-hCcEEEeCCHHHHHHHHHhC
Confidence            99999875 58899999999999999875

>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.4e-47  Score=314.96  Aligned_cols=165  Identities=21%  Similarity=0.305  Sum_probs=146.3

Q ss_pred             CCcHHHH-HHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecCC-cccccccCCCCCCCCccce
Q 028080            3 PDHPHYL-QSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGK-EAGEWTASNFHPYLPLETY   80 (214)
Q Consensus         3 ~~~~~y~-~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~~-e~~e~~~~~~n~~l~~e~~   80 (214)
                      +.||.|. .|++||++     ||++|..+|||||..|+|||+|+||+++||+|+||+|.. .+.+    ..|++++  .+
T Consensus        14 ~~~~~~~~~a~~lg~~-----La~~g~~lv~GGG~~GlMga~a~ga~~~gg~viGv~~~~l~~~e----~~~~~~~--~~   82 (181)
T d1ydhb_          14 GHREVFSDAAIELGNE-----LVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIE----ISGETVG--DV   82 (181)
T ss_dssp             CSSTHHHHHHHHHHHH-----HHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHH----CCSCCCS--EE
T ss_pred             CcCCHHHHHHHHHHHH-----HHHCCCeEEECCCchHHHHHHHHhHhhcCCcccccchhhhhhhh----cCCcccC--cc
Confidence            4566665 58999999     999977778878888999999999999999999999853 2222    2477776  46


Q ss_pred             eecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhH
Q 028080           81 LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC  160 (214)
Q Consensus        81 i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~  160 (214)
                      +.+++|++||..|++.|        ||||+||||+|||||+|++|+|.|++.+    +||++++|.+|||++|++|++++
T Consensus        83 ~~~~~~~~Rk~~m~~~s--------dafIvlPGG~GTLdEl~e~l~l~ql~~~----~kpiiiln~~gfw~~l~~~l~~~  150 (181)
T d1ydhb_          83 RVVADMHERKAAMAQEA--------EAFIALPGGYGTMEELLEMITWSQLGIH----KKTVGLLNVDGYYNNLLALFDTG  150 (181)
T ss_dssp             EEESSHHHHHHHHHHHC--------SEEEECSCSHHHHHHHHHHHHHHHHTSC----CCEEEEECGGGTTHHHHHHHHHH
T ss_pred             eeeccHHHHHHHHHHhC--------eeEEEeCCccchHHHHHHHHHHHHhccc----CCCeEEEecCccHHHHHHHHHHH
Confidence            78899999999999997        9999999999999999999999999874    89999999999999999999999


Q ss_pred             HHcCCCChhhhcccEEEeCCHHHHHHHHHhh
Q 028080          161 EDWGTVAKDEVASLWKICDSNSEALSYLAEF  191 (214)
Q Consensus       161 ~~~gfi~~~~~~~~i~~~~s~ee~~~~l~~~  191 (214)
                      +++||+++++ .+++.+++||||++++|++|
T Consensus       151 ~~~g~i~~~~-~~~~~~~d~~ee~~~~l~~~  180 (181)
T d1ydhb_         151 VEEGFIKPGA-RNIVVSAPTAKELMEKMEEY  180 (181)
T ss_dssp             HHHTSSCHHH-HTTEEEESSHHHHHHHHHHC
T ss_pred             HHCCCCCHHH-cCeEEEeCCHHHHHHHHHhh
Confidence            9999999975 58899999999999999987

>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1465 (TTHA1644)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.8e-46  Score=314.60  Aligned_cols=164  Identities=31%  Similarity=0.559  Sum_probs=144.8

Q ss_pred             CCCcHHHHHHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCcccee
Q 028080            2 GPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYL   81 (214)
Q Consensus         2 ~~~~~~y~~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i   81 (214)
                      +++++.|+.|++||+.     ||++|. .|++||++|+|+|+|+||+++||+|+||+|.....    ..+|++++  .++
T Consensus        45 ~~~~~~y~~A~~LG~~-----La~~g~-~lv~GGg~GlMgava~ga~~~gG~viGi~~~~~~~----~~~~~~~~--~~i  112 (208)
T d1weka_          45 GEGHPAYEAGYRLGRA-----LAEAGF-GVVTGGGPGVMEAVNRGAYEAGGVSVGLNIELPHE----QKPNPYQT--HAL  112 (208)
T ss_dssp             CTTSHHHHHHHHHHHH-----HHHHTC-EEEECSCSHHHHHHHHHHHHTTCCEEEEEECCTTC----CCCCSCCS--EEE
T ss_pred             CCcChHHHHHHHHHHH-----HHhCcc-eEEeCCCchHHHHHHhhhhhcCCceeccccccccc----cccccccc--eEE
Confidence            4678899999999999     999965 55556667999999999999999999998865322    23699987  567


Q ss_pred             ecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHH
Q 028080           82 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE  161 (214)
Q Consensus        82 ~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~  161 (214)
                      ++++|++||..|++.|        ||||+||||+|||+|+|++|+|.|++.+   ++|||||+| +|||+++++|+++++
T Consensus       113 ~~~~~~~Rk~~m~~~s--------DafI~lPGG~GTLdEl~e~lt~~ql~~~---~~kPIil~~-~gfw~~l~~~l~~~~  180 (208)
T d1weka_         113 SLRYFFVRKVLFVRYA--------VGFVFLPGGFGTLDELSEVLVLLQTEKV---HRFPVFLLD-RGYWEGLVRWLAFLR  180 (208)
T ss_dssp             EESCHHHHHHHHHHTE--------EEEEECSCCHHHHHHHHHHHHHHHTTSS---CCCCEEEEC-HHHHHHHHHHHHHHH
T ss_pred             ecccHHHHHHHHHhCC--------CceEEecCcchhHHHHHHHHHHHhcccc---CcCcccccC-CcHHHHHHHHHHHHH
Confidence            7899999999999987        9999999999999999999999999865   589999998 799999999999999


Q ss_pred             HcCCCChhhhcccEEEeCCHHHHHHHHHh
Q 028080          162 DWGTVAKDEVASLWKICDSNSEALSYLAE  190 (214)
Q Consensus       162 ~~gfi~~~~~~~~i~~~~s~ee~~~~l~~  190 (214)
                      ++||+++++ .+++.+|+|++|+++.|++
T Consensus       181 ~~gfi~~~~-~~~i~v~d~~ee~i~~L~s  208 (208)
T d1weka_         181 DQKAVGPED-LQLFRLTDEPEEVVQALKA  208 (208)
T ss_dssp             HTTSSCTTG-GGGSEEESCHHHHHHHHHC
T ss_pred             HCCCCChHH-hCcEEEeCCHHHHHHHhhC
Confidence            999999864 5889999999999999874

>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TM1055
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.8e-41  Score=275.78  Aligned_cols=149  Identities=23%  Similarity=0.284  Sum_probs=129.6

Q ss_pred             HHHHHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecCCcccccccCCCCCCCCccceeecCch
Q 028080            7 HYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFF   86 (214)
Q Consensus         7 ~y~~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~~e~~e~~~~~~n~~l~~e~~i~~~~m   86 (214)
                      .++.|++||++     ||++ +++|||||++|+|+|+|+||+++||.|+||+|..+       ..|+|++. .+.+..+|
T Consensus        21 ~~~~a~~lG~~-----la~~-g~~V~~GG~~GlM~ava~ga~~~gg~viGilP~~~-------~~n~~~~~-~i~~~~~~   86 (170)
T d1rcua_          21 LRDICLELGRT-----LAKK-GYLVFNGGRDGVMELVSQGVREAGGTVVGILPDEE-------AGNPYLSV-AVKTGLDF   86 (170)
T ss_dssp             GHHHHHHHHHH-----HHHT-TCEEEECCSSHHHHHHHHHHHHTTCCEEEEESTTC-------CCCTTCSE-EEECCCCH
T ss_pred             HHHHHHHHHHH-----HHHC-CCEEECCCccCHHHHHHHHHHhcCCccccccchhh-------ccCcccce-eEEeccch
Confidence            44458999999     9999 57999999999999999999999999999998643       25999872 23334589


Q ss_pred             HHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhHHHcCCC
Q 028080           87 SARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV  166 (214)
Q Consensus        87 ~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi  166 (214)
                      ++||..|++.|        |+||+||||+|||+|+|++|+|          +|||+++|.++||++++.  +.+.+.+|+
T Consensus        87 ~~Rk~~m~~~s--------da~I~lPGG~GTl~El~~a~~l----------~KPiilln~~g~w~~~i~--~~~~~~~~i  146 (170)
T d1rcua_          87 QMRSFVLLRNA--------DVVVSIGGEIGTAIEILGAYAL----------GKPVILLRGTGGWTDRIS--QVLIDGKYL  146 (170)
T ss_dssp             HHHHHHHHTTC--------SEEEEESCCHHHHHHHHHHHHT----------TCCEEEETTSCHHHHHGG--GGCBTTTBS
T ss_pred             hhhHHHHhhcc--------cceeeeccccchHHHHHHHHHh----------CCceEEecCCCchHHHHH--HHHHHCCCC
Confidence            99999999987        9999999999999999999986          579999999999999876  457889999


Q ss_pred             ChhhhcccEEEeCCHHHHHHHHHh
Q 028080          167 AKDEVASLWKICDSNSEALSYLAE  190 (214)
Q Consensus       167 ~~~~~~~~i~~~~s~ee~~~~l~~  190 (214)
                      ++++. +.+.+++|+||+++.|++
T Consensus       147 ~~~~~-~~i~~~~~~ee~~~~l~~  169 (170)
T d1rcua_         147 DNRRI-VEIHQAWTVEEAVQIIEQ  169 (170)
T ss_dssp             STTCC-SCEEEESSHHHHHHHHHT
T ss_pred             CHHHc-CeEEEeCCHHHHHHHHHc
Confidence            98654 679999999999999986

>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1887 (TTHA0294)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.1e-41  Score=275.86  Aligned_cols=157  Identities=25%  Similarity=0.365  Sum_probs=129.7

Q ss_pred             CCCcHHHHHHHHHHhhhhHHHHHhcCCcEEEecCcccHHHHHHHHHHhcCCcEEEEecC-CcccccccCCCCCCCCccce
Q 028080            2 GPDHPHYLQSFELGGEARHLQIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KEAGEWTASNFHPYLPLETY   80 (214)
Q Consensus         2 ~~~~~~y~~A~~LG~~~~~~~lA~~~~~~V~~GG~~GlM~ava~ga~~~gG~viGIi~~-~e~~e~~~~~~n~~l~~e~~   80 (214)
                      +++++.|++|++||++     ||++| +.|++||++|+|+|+|+||+++||.++||+|. .-+.+   +.+|++++  .+
T Consensus        13 ~~~~~~~~~a~~lG~~-----la~~g-~~lv~GGg~G~M~a~a~ga~~~gG~~iGv~~~~~l~~~---~~~n~~~~--~~   81 (171)
T d1weha_          13 SPEDPLYARWVRYGEV-----LAEEG-FGLACGGYQGGMEALARGVKAKGGLVVGVTAPAFFPER---RGPNPFVD--LE   81 (171)
T ss_dssp             CTTSHHHHHHHHHHHH-----HHHTT-EEEEECCSSTHHHHHHHHHHHTTCCEEECCCGGGCTTS---CSSCTTCS--EE
T ss_pred             CCCCHHHHHHHHHHHH-----HHHCC-CceeeCcchHHHHHHHHHHHhccCceeeeeeccccchh---hccCcccc--cc
Confidence            4677888889999999     99995 66666777899999999999999999999853 21222   23699997  67


Q ss_pred             eecCchHHHHHHhHhhhhhcCCCCccEEEEeCCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHHhH
Q 028080           81 LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC  160 (214)
Q Consensus        81 i~~~~m~~Rk~~m~~~s~~~~~~~sDa~I~lPGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~  160 (214)
                      +.+++|++||..|++.|        ||||+||||+|||+|+|++|++.|++.      ||++++|.+|||+++++     
T Consensus        82 i~~~~~~~Rk~~m~~~s--------da~I~lPGG~GTLdEl~e~~~~~~l~~------~~~~~~~~~g~w~~ll~-----  142 (171)
T d1weha_          82 LPAATLPQRIGRLLDLG--------AGYLALPGGVGTLAELVLAWNLLYLRR------GVGRPLAVDPYWLGLLK-----  142 (171)
T ss_dssp             CCCSSHHHHHHHHHHHE--------EEEEECSCCHHHHHHHHHHHHHHHTCS------SCSCCEEECGGGGGTCC-----
T ss_pred             cccchHHHHHHHHHHcc--------cceeecCCccchHHHHHHHHHHHHcCC------CCCcCeecCcccHHHHh-----
Confidence            77899999999999997        999999999999999999998888743      33333344689999854     


Q ss_pred             HHcCCCChhhhcccEEEeCCHHHHHHHHHh
Q 028080          161 EDWGTVAKDEVASLWKICDSNSEALSYLAE  190 (214)
Q Consensus       161 ~~~gfi~~~~~~~~i~~~~s~ee~~~~l~~  190 (214)
                       ..||+++++. +.+.+++|+||+++.|++
T Consensus       143 -~~g~i~~~~~-~~~~i~~~~~e~~~~l~~  170 (171)
T d1weha_         143 -AHGEIAPEDV-GLLRVVADEEDLRRFLRS  170 (171)
T ss_dssp             -CBTTBCHHHH-TTSEECCSHHHHHHHHHT
T ss_pred             -hCCCCCHHHc-CcEEEECCHHHHHHHHhc
Confidence             4689998754 788999999999999986

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=90.95  E-value=0.089  Score=39.83  Aligned_cols=42  Identities=21%  Similarity=0.097  Sum_probs=31.2

Q ss_pred             HHHHHHhHhhhhhcCCCCccEEEEeCCC----CCCHHHHHHHHHHHHhhhhcCCCCccEEEEcC
Q 028080           87 SARKHGLIDCAVRNDSCDRTAVVALPGG----VGTLDEMFEILALIQLERIGSELPVPFLVMNY  146 (214)
Q Consensus        87 ~~Rk~~m~~~s~~~~~~~sDa~I~lPGG----~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~  146 (214)
                      ..|...+++.|        |++|++-.|    .||.-|+..++++          .||||++..
T Consensus        72 f~~D~~~i~~s--------D~vIA~ldg~~~D~GTa~EiG~A~a~----------gKPvi~~~~  117 (167)
T d1s2da_          72 YQNDLTGISNA--------TCGVFLYDMDQLDDGSAFEIGFMRAM----------HKPVILVPF  117 (167)
T ss_dssp             HHHHHHHHHHC--------SEEEEEEESSSCCHHHHHHHHHHHHT----------TCCEEEEEE
T ss_pred             HHHHHHHHHHC--------CEEEEEeCCCCCCccHHHHHHHHHHC----------CCeEEEEec
Confidence            45555666665        999985433    3999999887775          689999864

>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=88.74  E-value=0.22  Score=37.31  Aligned_cols=33  Identities=18%  Similarity=-0.014  Sum_probs=26.3

Q ss_pred             ccEEEEeCCC----CCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCC
Q 028080          105 RTAVVALPGG----VGTLDEMFEILALIQLERIGSELPVPFLVMNYD  147 (214)
Q Consensus       105 sDa~I~lPGG----~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~  147 (214)
                      ||++|++-.|    .||.-|+-.++++          +|||+++..+
T Consensus        78 aD~via~ldg~~~D~Gta~EiG~A~a~----------gKpvi~~~~~  114 (156)
T d1f8ya_          78 NDIMLGVYIPDEEDVGLGMELGYALSQ----------GKYVLLVIPD  114 (156)
T ss_dssp             SSEEEEECCGGGCCHHHHHHHHHHHHT----------TCEEEEEECG
T ss_pred             CCEEEEEeCCCCCCCCHHHHHHHHHHc----------CCcEEEEecC
Confidence            3999986655    4999999887774          6899999653

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.75  E-value=0.54  Score=35.00  Aligned_cols=86  Identities=20%  Similarity=0.143  Sum_probs=50.8

Q ss_pred             hHHHHHHhHhhhhhcCCCCccEEEEeC----C---CCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcCCccchHHHHHHH
Q 028080           86 FSARKHGLIDCAVRNDSCDRTAVVALP----G---GVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLG  158 (214)
Q Consensus        86 m~~Rk~~m~~~s~~~~~~~sDa~I~lP----G---G~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~  158 (214)
                      ..++...+++.|        |++|+.-    |   -.||.-|+-.++++          .|||+.|..+  |....+...
T Consensus        49 If~~d~~~i~~~--------D~VIA~Ld~frg~~~D~GTa~EiG~A~al----------gKPVi~~~~d--~r~~~~~~~  108 (152)
T d2f62a1          49 IRQKNIQMIKDC--------DAVIADLSPFRGHEPDCGTAFEVGCAAAL----------NKMVLTFTSD--RRNMREKYG  108 (152)
T ss_dssp             HHHHHHHHHHHC--------SEEEEECCCCSSSSCCHHHHHHHHHHHHT----------TCEEEEECSC--CSCHHHHHT
T ss_pred             HHHHHHHHHHhC--------CEEEEEccccCCCCCCchHHHHHHHHHHC----------CCeEEEEecC--chHHHHhcc
Confidence            455666677776        9999962    4   58999999887775          6899999753  333333211


Q ss_pred             hH-HHcCCCCh-----hh--hcccEEEeCCHHHHHHHHHhh
Q 028080          159 DC-EDWGTVAK-----DE--VASLWKICDSNSEALSYLAEF  191 (214)
Q Consensus       159 ~~-~~~gfi~~-----~~--~~~~i~~~~s~ee~~~~l~~~  191 (214)
                      .. -+.|++-.     .+  ...-+.++.+.|++++.+..-
T Consensus       109 ~~~d~~g~~vedfg~~~NLMl~~~~~~~~~~e~~l~~~~~~  149 (152)
T d2f62a1         109 SGVDKDNLRVEGFGLPFNLMLYDGVEVFDSFESAFKYFLAN  149 (152)
T ss_dssp             SSBCTTSCBCCCSSCSSCGGGCCSSCEESSHHHHHHHHHHH
T ss_pred             cccCCCCceeecCCCccchhhccchheecCHHHHHHHHHhh
Confidence            11 11111110     00  011245678899988887654

>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: YpsA-like
domain: Hypothetical protein YpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=83.84  E-value=7  Score=29.28  Aligned_cols=106  Identities=14%  Similarity=0.049  Sum_probs=61.9

Q ss_pred             hcCCcEEEecCcccHHHHHHHHHHhcCC-----cEEEEecCCcccc-cccCCCCCC---CC-ccceeec--------Cch
Q 028080           25 RLLDCTTWSGAGPGLMDAVTKGAMQAGK-----PVGGFKVGKEAGE-WTASNFHPY---LP-LETYLTC--------RFF   86 (214)
Q Consensus        25 ~~~~~~V~~GG~~GlM~ava~ga~~~gG-----~viGIi~~~e~~e-~~~~~~n~~---l~-~e~~i~~--------~~m   86 (214)
                      +.|-.-+++||..|.=--++..|++.+.     +.+-++|..+..+ |+......|   +. .+.+...        ..|
T Consensus        40 e~G~~~~i~g~alG~D~~aAevvl~lk~~yp~ikL~~~lPf~~~~~~w~e~~~~~y~~ll~~aD~v~~vs~~~y~~~~q~  119 (177)
T d2nx2a1          40 DEGLEWILISGQLGVELWAAEAAYDLQEEYPDLKVAVITPFYEQEKNWKEPNKEQYEAVLAQADYEASLTHRPYESPLQF  119 (177)
T ss_dssp             TTTCCEEEECCCTTHHHHHHHHHHTTTTTCTTCEEEEEESSBCTTTTSCHHHHHHHHHHHHHCSEEEESSSSBCCCHHHH
T ss_pred             HcCCCEEEEcCcccHHHHHHHHHHHHhhhCCCceEEEEecccccccCCCHHHHHHHHHHHhhCCEEEEeccCCCCCHHHH
Confidence            5567778999999999999999999876     3556667533211 110000000   00 0011111        127


Q ss_pred             HHHHHHhHhhhhhcCCCCccEEEEe-----CCCCCCHHHHHHHHHHHHhhhhcCCCCccEEEEcC
Q 028080           87 SARKHGLIDCAVRNDSCDRTAVVAL-----PGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY  146 (214)
Q Consensus        87 ~~Rk~~m~~~s~~~~~~~sDa~I~l-----PGG~GTLeEl~e~lt~~ql~~~~~~~~kPiilln~  146 (214)
                      ..|.+.|++.|        |.+|++     +||  |-.=+-.+-...  ..    .+.||+++++
T Consensus       120 ~~rn~~mvd~s--------d~liavyD~e~~Gg--t~~~v~~A~k~~--~~----~~~~i~~I~~  168 (177)
T d2nx2a1         120 KQKNQFFIDKS--------DGLLLLYDPEKEGS--PKYMLGTAEKRR--EQ----DGYPIYFITM  168 (177)
T ss_dssp             HHHHHHHHHHS--------SEEEEECCTTTCCT--THHHHHHHHHHH--HH----HCCCEEEECH
T ss_pred             HHHHHHHHHhc--------CeEEEEEeCCCCCC--HHHHHHHHHHHH--hc----cCCcEEEEcH
Confidence            88999999987        988886     354  544333332221  11    2689999985