Citrus Sinensis ID: 028123

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLSTEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVHEEFPCRSSIEPLALYIFFNLL
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHcccccccccccccccccccccccEEccccccccccccccccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHEEEEEEccc
Coil and Loop (DISEMBL)
MATRNRTLIYKRYRDALKtvrvptstsplqssgksscsgpvielvnssllnpnrnyaplstedpgnssrgavtvglppawvdVSEEIATNVQRARTKMAELARAHAKAlmpsfgdgkedQHAIESLTQEITNILKRSEKRLQQLsaagpsedsnVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQkevheefpcrssieplALYIFFNLL
Flexible Loop (DISEMBL)
matrnrtliykryrdalktvrvptstsplqssgksscsgPVIELVNSSLLNPNRNYAPlstedpgnssRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLsaagpsedsnvrkNVQRSLATDLQNLSMELRKKQSTYLKRLRqqkevheefpcrssieplalyIFFNLL
Low Complexity Region (SEG)
MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLSTEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVHEEFPCRSSIEPLALYIFFNLL
Disordered region (IsUnstruct)
*******LIYKRYRDALK*****************************************************VTVGLPPAWVDVSEEIATN********************************************************************************************************FPCRSSIEPLALYIFFNL*
Disordered Region (DISOPRED)
MATRNRTLIYKRYRDA**********************************************************GLPPAWVDVSEEIATNVQRARTKMAELARA******************IESLTQEITNILKRSEK*****************KNVQRSLATDLQNLSMELRKKQSTYL******************IEPLALYIFFNLL
Disordered Region (DISEMBL)
MATRNRTLIYKRYRDALKTVR****************SGPVIELVNSSLLNPNRNYAPLSTEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQ***************NVQRSLATDLQNLSMELRKKQSTYLK************PCRSSIEPLALYIFFNLL
Disordered Region (DISPRO)
****NRTLIYKRYRDALKT****************************SL***************GNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVHEEFPCRSSIEPLALYIFFNLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLSTEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLxxxxxxxxxxxxxxxxxxxxxGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVHEEFPCRSSIEPLALYIFFNLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	213	2.2.26 [Sep-21-2011]
O65359	322	Syntaxin-41 OS=Arabidopsi	yes	no	0.887	0.586	0.778	3e-84
Q9SUJ1	331	Syntaxin-43 OS=Arabidopsi	no	no	0.892	0.574	0.736	5e-82
Q9SWH4	323	Syntaxin-42 OS=Arabidopsi	no	no	0.887	0.585	0.625	8e-64
Q8BVI5	326	Syntaxin-16 OS=Mus muscul	yes	no	0.586	0.383	0.4	8e-17
O14662	325	Syntaxin-16 OS=Homo sapie	yes	no	0.586	0.384	0.410	1e-16
Q9P6P1	301	t-SNARE affecting a late	yes	no	0.765	0.541	0.321	6e-12
Q08144	397	T-SNARE affecting a late	yes	no	0.826	0.443	0.230	1e-05

>sp|O65359|SYP41_ARATH Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1

 Score =  310 bits (795), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 148/190 (77%), Positives = 174/190 (91%), Gaps = 1/190 (0%)

Query: 1   MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLS 60
           MATRNRTL++++YR++L++VR P S+S L  + +S   GPVIE+ ++SLLNPNR+YAP+S
Sbjct: 1   MATRNRTLLFRKYRNSLRSVRAPLSSSSLTGT-RSGGVGPVIEMASTSLLNPNRSYAPIS 59

Query: 61  TEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQ 120
           TEDPG SS+GA+TVGLPPAWVDVSEEI+ N+QRARTKMAEL +AHAKALMPSFGDGKEDQ
Sbjct: 60  TEDPGTSSKGAITVGLPPAWVDVSEEISVNIQRARTKMAELGKAHAKALMPSFGDGKEDQ 119

Query: 121 HAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQST 180
           H IESLTQEIT +LK+SEK+LQ+LSA+GPSEDSNVRKNVQRSLATDLQ LSMELRKKQST
Sbjct: 120 HNIESLTQEITFLLKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDLQLLSMELRKKQST 179

Query: 181 YLKRLRQQKE 190
           YLKRLRQQKE
Sbjct: 180 YLKRLRQQKE 189

Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUJ1|SYP43_ARATH Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2

 Score =  303 bits (777), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 145/197 (73%), Positives = 171/197 (86%), Gaps = 7/197 (3%)

Query: 1   MATRNRTLIYKRYRDALKTVRVPTSTSPLQS-------SGKSSCSGPVIELVNSSLLNPN 53
           MATRNRTL++++YR++L++VR P  +S   +       +G  S  GPVIE+ ++SLLNPN
Sbjct: 1   MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEMASTSLLNPN 60

Query: 54  RNYAPLSTEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSF 113
           R+YAP+STEDPGNSSRG +TVGLPP WVDVSEEI+  +QRARTKMAEL +AHAKALMPSF
Sbjct: 61  RSYAPVSTEDPGNSSRGTITVGLPPDWVDVSEEISVYIQRARTKMAELGKAHAKALMPSF 120

Query: 114 GDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSME 173
           GDGKEDQH IE+LTQE+T +LK+SEK+LQ+LSAAGPSEDSNVRKNVQRSLATDLQNLSME
Sbjct: 121 GDGKEDQHQIETLTQEVTFLLKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSME 180

Query: 174 LRKKQSTYLKRLRQQKE 190
           LRKKQSTYLKRLR QKE
Sbjct: 181 LRKKQSTYLKRLRLQKE 197

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SWH4|SYP42_ARATH Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 SV=1

 Score =  243 bits (620), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 122/195 (62%), Positives = 149/195 (76%), Gaps = 6/195 (3%)

Query: 1   MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRN-YAPL 59
           MATRNRT +Y+++RDA K+ R P S S   S G     GPVIE+V+ S    N + YAPL
Sbjct: 1   MATRNRTTVYRKHRDACKSARAPLSLSASDSFG-----GPVIEMVSGSFSRSNHSSYAPL 55

Query: 60  STEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKED 119
           ++ DPG SS  A T+G+PPAWVD SEEI  N+Q+ R KM ELA+AH+KALMP+FGD K  
Sbjct: 56  NSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGI 115

Query: 120 QHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQS 179
              +E LT EIT++L++SEKRLQ LS  GPSE+SN+RKNVQRSLATDLQNLSMELR+KQS
Sbjct: 116 HREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQS 175

Query: 180 TYLKRLRQQKEVHEE 194
           TYLKRL+QQKE  +E
Sbjct: 176 TYLKRLQQQKEGQDE 190

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8BVI5|STX16_MOUSE Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3

 Score = 87.0 bits (214), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 5/130 (3%)

Query: 71  AVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKAL-MPSFGDGKEDQHAIESLTQE 129
            VT   PP WVD  +EI  +V R + KM ELA  H K L  P+  D  E++HAIE  TQE
Sbjct: 69  GVTKRSPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQE 128

Query: 130 ITNILKRSEKRLQQLSA----AGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRL 185
           +T +  R ++ +Q L +    A   ++  + +NV  SLA  LQ LS   R  QS YLKR+
Sbjct: 129 VTQLFHRCQRAVQALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRM 188

Query: 186 RQQKEVHEEF 195
           + ++E  + F
Sbjct: 189 KNREERSQHF 198

SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.

Mus musculus (taxid: 10090)

>sp|O14662|STX16_HUMAN Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 4/129 (3%)

Query: 71  AVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKAL-MPSFGDGKEDQHAIESLTQE 129
            VT   PP WVD  +EI  +V R + KM ELA  H K L  P+  D  E++HAIE  TQE
Sbjct: 69  GVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQE 128

Query: 130 ITNILKRSEKRLQQL---SAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLR 186
           IT +  R ++ +Q L   + A   ++  +  NV  SLA  LQ LS   R  QS YLKR++
Sbjct: 129 ITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYLKRMK 188

Query: 187 QQKEVHEEF 195
            ++E  + F
Sbjct: 189 NREERSQHF 197

SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.

Homo sapiens (taxid: 9606)

>sp|Q9P6P1|TLG2_SCHPO t-SNARE affecting a late Golgi compartment protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tlg2 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 27/190 (14%)

Query: 1   MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLS 60
           MA R+RT +Y  +R +                   S  G  +EL   S  +P      L 
Sbjct: 1   MAYRDRTGLYITFRQSY------------------SHHGQRLEL---SGWDPKEERQSLV 39

Query: 61  TEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQ 120
            +D  +++   + + L P WV V  EI + +   R  +  L + +AK ++PSF D  E +
Sbjct: 40  HKDNKDNTVIEMDM-LAPRWVTVEGEIDSLLLNTRRNINLLDKQYAKHVLPSFSDKTEQE 98

Query: 121 HAIESLTQEITNILKRSEKRLQ----QLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRK 176
           + I+ LT +IT   +R +K LQ    Q ++A  SE + + KN   +LA+ +Q  S + RK
Sbjct: 99  NEIQRLTIQITQDFQRCQKLLQVTKAQTNSATGSE-ALMAKNFLSNLASRIQTESAQFRK 157

Query: 177 KQSTYLKRLR 186
           KQSTYLK+LR
Sbjct: 158 KQSTYLKKLR 167

t-SNARE that functions in transport from the endosome to the late Golgi and on the endocytic pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q08144|TLG2_YEAST T-SNARE affecting a late Golgi compartment protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG2 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 90/195 (46%), Gaps = 19/195 (9%)

Query: 4   RNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPV-IELVNSSLLNPNRNYAPLSTE 62
           R+RT ++  YR        P + +   SSGK+       IE+    ++N + + +   T+
Sbjct: 3   RDRTNLFLSYRRTF-----PHNITF--SSGKAPLGDDQDIEMGTYPMMNMSHDISARLTD 55

Query: 63  DPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHA 122
           +  N      +  LPP ++D+++++   +   R    +LA+ + K  +P F D   D+  
Sbjct: 56  ERKNKHENH-SDALPPIFIDIAQDVDDYLLEVRRLSEQLAKVYRKNSLPGFEDKSHDEAL 114

Query: 123 IESLTQEITNILKRSEKRLQQLSAAGPS----------EDSNVRKNVQRSLATDLQNLSM 172
           IE L+ ++  +L++    +++L     S          E+  +  N+Q+  A  +Q  S 
Sbjct: 115 IEDLSFKVIQMLQKCYAVMKRLKTIYNSQFVDGKQLSREELIILDNLQKIYAEKIQTESN 174

Query: 173 ELRKKQSTYLKRLRQ 187
           + R  Q+ YLK L +
Sbjct: 175 KFRVLQNNYLKFLNK 189

t-SNARE that functions in transport from the endosome to the late Golgi and on the endocytic pathway.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
297812899	322	hypothetical protein ARALYDRAFT_910771 [	0.887	0.586	0.784	1e-82
7488360	307	syntaxin homolog A_IG002P16.16 - Arabido	0.887	0.615	0.778	1e-82
15240425	322	syntaxin-41 [Arabidopsis thaliana] gi|79	0.887	0.586	0.778	2e-82
218744538	324	syntaxin [Nicotiana tabacum]	0.882	0.580	0.794	3e-82
356576833	326	PREDICTED: syntaxin-43-like [Glycine max	0.882	0.576	0.782	5e-82
449454046	329	PREDICTED: syntaxin-43-like [Cucumis sat	0.892	0.577	0.791	6e-81
449490865	329	PREDICTED: syntaxin-43-like [Cucumis sat	0.892	0.577	0.791	6e-81
297829100	331	hypothetical protein ARALYDRAFT_477864 [	0.892	0.574	0.746	9e-81
297790012	331	hypothetical protein ARALYDRAFT_497246 [	0.892	0.574	0.741	2e-80
30679592	331	syntaxin-43 [Arabidopsis thaliana] gi|38	0.892	0.574	0.736	2e-80

>gi|297812899|ref|XP_002874333.1| hypothetical protein ARALYDRAFT_910771 [Arabidopsis lyrata subsp. lyrata] gi|297320170|gb|EFH50592.1| hypothetical protein ARALYDRAFT_910771 [Arabidopsis lyrata subsp. lyrata]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 149/190 (78%), Positives = 173/190 (91%), Gaps = 1/190 (0%)

Query: 1   MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLS 60
           MATRNRTL++++YR++L++VR P S+S L  + +S   GPVIE+  +SLLNPNR+YAP+S
Sbjct: 1   MATRNRTLLFRKYRNSLRSVRAPLSSSSLTGT-RSGGVGPVIEMATTSLLNPNRSYAPVS 59

Query: 61  TEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQ 120
           TEDPG SS+GA+TVGLPPAWVDVSEEI+ N+QRARTKMAEL +AHAKALMPSFGDGKEDQ
Sbjct: 60  TEDPGTSSKGAITVGLPPAWVDVSEEISVNIQRARTKMAELGKAHAKALMPSFGDGKEDQ 119

Query: 121 HAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQST 180
           H IESLTQEIT +LK+SEK+LQ+LSAAGPSEDSNVRKNVQRSLATDLQ LSMELRKKQST
Sbjct: 120 HNIESLTQEITFLLKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDLQLLSMELRKKQST 179

Query: 181 YLKRLRQQKE 190
           YLKRLRQQKE
Sbjct: 180 YLKRLRQQKE 189

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7488360|pir||T01773 syntaxin homolog A_IG002P16.16 - Arabidopsis thaliana gi|2191179|gb|AAB61065.1| contains similarity to syntaxin [Arabidopsis thaliana]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/190 (77%), Positives = 174/190 (91%), Gaps = 1/190 (0%)

Query: 1   MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLS 60
           MATRNRTL++++YR++L++VR P S+S L  + +S   GPVIE+ ++SLLNPNR+YAP+S
Sbjct: 1   MATRNRTLLFRKYRNSLRSVRAPLSSSSLTGT-RSGGVGPVIEMASTSLLNPNRSYAPIS 59

Query: 61  TEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQ 120
           TEDPG SS+GA+TVGLPPAWVDVSEEI+ N+QRARTKMAEL +AHAKALMPSFGDGKEDQ
Sbjct: 60  TEDPGTSSKGAITVGLPPAWVDVSEEISVNIQRARTKMAELGKAHAKALMPSFGDGKEDQ 119

Query: 121 HAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQST 180
           H IESLTQEIT +LK+SEK+LQ+LSA+GPSEDSNVRKNVQRSLATDLQ LSMELRKKQST
Sbjct: 120 HNIESLTQEITFLLKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDLQLLSMELRKKQST 179

Query: 181 YLKRLRQQKE 190
           YLKRLRQQKE
Sbjct: 180 YLKRLRQQKE 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240425|ref|NP_198050.1| syntaxin-41 [Arabidopsis thaliana] gi|79328799|ref|NP_001031950.1| syntaxin-41 [Arabidopsis thaliana] gi|28380151|sp|O65359.1|SYP41_ARATH RecName: Full=Syntaxin-41; Short=AtSYP41; Short=AtTLG2a gi|3172538|gb|AAC27707.1| syntaxin of plants 41 [Arabidopsis thaliana] gi|332006253|gb|AED93636.1| syntaxin-41 [Arabidopsis thaliana] gi|332006254|gb|AED93637.1| syntaxin-41 [Arabidopsis thaliana]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 148/190 (77%), Positives = 174/190 (91%), Gaps = 1/190 (0%)

Query: 1   MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLS 60
           MATRNRTL++++YR++L++VR P S+S L  + +S   GPVIE+ ++SLLNPNR+YAP+S
Sbjct: 1   MATRNRTLLFRKYRNSLRSVRAPLSSSSLTGT-RSGGVGPVIEMASTSLLNPNRSYAPIS 59

Query: 61  TEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQ 120
           TEDPG SS+GA+TVGLPPAWVDVSEEI+ N+QRARTKMAEL +AHAKALMPSFGDGKEDQ
Sbjct: 60  TEDPGTSSKGAITVGLPPAWVDVSEEISVNIQRARTKMAELGKAHAKALMPSFGDGKEDQ 119

Query: 121 HAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQST 180
           H IESLTQEIT +LK+SEK+LQ+LSA+GPSEDSNVRKNVQRSLATDLQ LSMELRKKQST
Sbjct: 120 HNIESLTQEITFLLKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDLQLLSMELRKKQST 179

Query: 181 YLKRLRQQKE 190
           YLKRLRQQKE
Sbjct: 180 YLKRLRQQKE 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218744538|dbj|BAH03478.1| syntaxin [Nicotiana tabacum]

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 151/190 (79%), Positives = 169/190 (88%), Gaps = 2/190 (1%)

Query: 1   MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLS 60
           MA+RNRT+++++YRDAL++VRVP  +SP  SSG  S  GPVIEL  +SLLN NR+YAPLS
Sbjct: 1   MASRNRTILFRKYRDALRSVRVPAGSSPSTSSGHGS--GPVIELATTSLLNSNRSYAPLS 58

Query: 61  TEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQ 120
           TEDPG SS G VTVGLPPAWVDVSEEI  NVQR RTKMAELA+AHAKALMPSFGDGKEDQ
Sbjct: 59  TEDPGTSSNGPVTVGLPPAWVDVSEEITGNVQRVRTKMAELAKAHAKALMPSFGDGKEDQ 118

Query: 121 HAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQST 180
             IE+LT EIT +LKRSEK+LQ+LSAAGPSEDSNVRKNVQRSLATDLQ+LSMELRKKQST
Sbjct: 119 RRIEALTHEITGLLKRSEKKLQRLSAAGPSEDSNVRKNVQRSLATDLQSLSMELRKKQST 178

Query: 181 YLKRLRQQKE 190
           YLKRL+QQKE
Sbjct: 179 YLKRLQQQKE 188

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576833|ref|XP_003556534.1| PREDICTED: syntaxin-43-like [Glycine max]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 151/193 (78%), Positives = 176/193 (91%), Gaps = 5/193 (2%)

Query: 1   MATRNRTLIYKRYRDALKTVRVPT-STSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPL 59
           MATRNRTL+++++RDALK+VRVP+ S+ P  +SG  +  GPVIEL  +S LNPNR+YAPL
Sbjct: 1   MATRNRTLLFRKHRDALKSVRVPSISSPPFTASG--AGGGPVIELATTSFLNPNRSYAPL 58

Query: 60  STEDPGNSSRG--AVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGK 117
           STEDPGNSSRG  A+TVGLPPAWVD+SEEI+ NVQRARTKMAELA+AH+KALMPSFGDGK
Sbjct: 59  STEDPGNSSRGPNAITVGLPPAWVDLSEEISANVQRARTKMAELAKAHSKALMPSFGDGK 118

Query: 118 EDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKK 177
           EDQ AIE+LT EIT+++K+SEKRL++LSA GPSEDSNVRKNVQRSLATDLQNLS+ELRKK
Sbjct: 119 EDQRAIETLTHEITDLIKKSEKRLRRLSATGPSEDSNVRKNVQRSLATDLQNLSVELRKK 178

Query: 178 QSTYLKRLRQQKE 190
           QSTYLKRLRQQKE
Sbjct: 179 QSTYLKRLRQQKE 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454046|ref|XP_004144767.1| PREDICTED: syntaxin-43-like [Cucumis sativus]

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 152/192 (79%), Positives = 176/192 (91%), Gaps = 2/192 (1%)

Query: 1   MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSG--PVIELVNSSLLNPNRNYAP 58
           MA+RNRTL++K+YRDAL++VRVPTS+SP  +S  +S +G  PVIELV+SSLL+PNR+YAP
Sbjct: 1   MASRNRTLLFKKYRDALRSVRVPTSSSPAFASPSTSSAGGGPVIELVSSSLLHPNRSYAP 60

Query: 59  LSTEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKE 118
           LSTEDPGNSS+GA+TVGLPPAWVDVSEEIA NVQ AR KM ELA+AHAKALMPSFGDGKE
Sbjct: 61  LSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQCARVKMMELAKAHAKALMPSFGDGKE 120

Query: 119 DQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQ 178
           DQ  IESLTQ+IT+++K+SEK L++L  AGPSEDSN+RKNVQRSLATDLQNLSMELRKKQ
Sbjct: 121 DQRLIESLTQDITSLIKKSEKGLKRLFVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQ 180

Query: 179 STYLKRLRQQKE 190
           STYLKRLRQQKE
Sbjct: 181 STYLKRLRQQKE 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490865|ref|XP_004158729.1| PREDICTED: syntaxin-43-like [Cucumis sativus]

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 152/192 (79%), Positives = 176/192 (91%), Gaps = 2/192 (1%)

Query: 1   MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSG--PVIELVNSSLLNPNRNYAP 58
           MA+RNRTL++K+YRDAL++VRVPTS+SP  +S  +S +G  PVIELV+SSLL+PNR+YAP
Sbjct: 1   MASRNRTLLFKKYRDALRSVRVPTSSSPAFASPSTSSAGGGPVIELVSSSLLHPNRSYAP 60

Query: 59  LSTEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKE 118
           LSTEDPGNSS+GA+TVGLPPAWVDVSEEIA NVQ AR KM ELA+AHAKALMPSFGDGKE
Sbjct: 61  LSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQCARVKMMELAKAHAKALMPSFGDGKE 120

Query: 119 DQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQ 178
           DQ  IESLTQ+IT+++K+SEK L++L  AGPSEDSN+RKNVQRSLATDLQNLSMELRKKQ
Sbjct: 121 DQRLIESLTQDITSLIKKSEKGLKRLFVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQ 180

Query: 179 STYLKRLRQQKE 190
           STYLKRLRQQKE
Sbjct: 181 STYLKRLRQQKE 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829100|ref|XP_002882432.1| hypothetical protein ARALYDRAFT_477864 [Arabidopsis lyrata subsp. lyrata] gi|297328272|gb|EFH58691.1| hypothetical protein ARALYDRAFT_477864 [Arabidopsis lyrata subsp. lyrata]

 Score =  305 bits (781), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 147/197 (74%), Positives = 170/197 (86%), Gaps = 7/197 (3%)

Query: 1   MATRNRTLIYKRYRDALKTVRVPTSTSPLQS-------SGKSSCSGPVIELVNSSLLNPN 53
           MATRNRTL++++YR +L++VR P  +S   +       +G  S  GPVIE+ ++SLLNPN
Sbjct: 1   MATRNRTLLFRKYRSSLRSVRAPMGSSSSSTVTEHTSLTGAKSGLGPVIEMASTSLLNPN 60

Query: 54  RNYAPLSTEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSF 113
           R+YAP+STEDPGNSSRG +TVGLPP WVDVSEEI+  +QRARTKMAEL +AHAKALMPSF
Sbjct: 61  RSYAPVSTEDPGNSSRGTITVGLPPDWVDVSEEISVYIQRARTKMAELGKAHAKALMPSF 120

Query: 114 GDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSME 173
           GDGKEDQH IESLTQEIT +LK+SEK+LQ+LSAAGPSEDSNVRKNVQRSLATDLQNLSME
Sbjct: 121 GDGKEDQHQIESLTQEITFLLKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSME 180

Query: 174 LRKKQSTYLKRLRQQKE 190
           LRKKQSTYLKRLR QKE
Sbjct: 181 LRKKQSTYLKRLRLQKE 197

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790012|ref|XP_002862921.1| hypothetical protein ARALYDRAFT_497246 [Arabidopsis lyrata subsp. lyrata] gi|297308695|gb|EFH39180.1| hypothetical protein ARALYDRAFT_497246 [Arabidopsis lyrata subsp. lyrata]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 146/197 (74%), Positives = 170/197 (86%), Gaps = 7/197 (3%)

Query: 1   MATRNRTLIYKRYRDALKTVRVPTSTSPLQS-------SGKSSCSGPVIELVNSSLLNPN 53
           MATRNRTL++++YR +L++VR P  +S   +       +G  S  GPVIE+ ++SLLNPN
Sbjct: 1   MATRNRTLLFRKYRSSLRSVRAPMGSSSSSTVTEHTSLTGAKSGLGPVIEMASTSLLNPN 60

Query: 54  RNYAPLSTEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSF 113
           R+YAP+STEDPGNSSRG +TVGLPP W+DVSEEI+  +QRARTKMAEL +AHAKALMPSF
Sbjct: 61  RSYAPVSTEDPGNSSRGTITVGLPPDWLDVSEEISVYIQRARTKMAELGKAHAKALMPSF 120

Query: 114 GDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSME 173
           GDGKEDQH IESLTQEIT +LK+SEK+LQ+LSAAGPSEDSNVRKNVQRSLATDLQNLSME
Sbjct: 121 GDGKEDQHQIESLTQEITFLLKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSME 180

Query: 174 LRKKQSTYLKRLRQQKE 190
           LRKKQSTYLKRLR QKE
Sbjct: 181 LRKKQSTYLKRLRLQKE 197

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679592|ref|NP_850519.1| syntaxin-43 [Arabidopsis thaliana] gi|38503420|sp|Q9SUJ1.2|SYP43_ARATH RecName: Full=Syntaxin-43; Short=AtSYP43 gi|6714439|gb|AAF26126.1|AC011620_2 putative syntaxin protein, AtSNAP33 [Arabidopsis thaliana] gi|20466514|gb|AAM20574.1| putative syntaxin protein, AtSNAP33 [Arabidopsis thaliana] gi|332640762|gb|AEE74283.1| syntaxin-43 [Arabidopsis thaliana]

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 145/197 (73%), Positives = 171/197 (86%), Gaps = 7/197 (3%)

Query: 1   MATRNRTLIYKRYRDALKTVRVPTSTSPLQS-------SGKSSCSGPVIELVNSSLLNPN 53
           MATRNRTL++++YR++L++VR P  +S   +       +G  S  GPVIE+ ++SLLNPN
Sbjct: 1   MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEMASTSLLNPN 60

Query: 54  RNYAPLSTEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSF 113
           R+YAP+STEDPGNSSRG +TVGLPP WVDVSEEI+  +QRARTKMAEL +AHAKALMPSF
Sbjct: 61  RSYAPVSTEDPGNSSRGTITVGLPPDWVDVSEEISVYIQRARTKMAELGKAHAKALMPSF 120

Query: 114 GDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSME 173
           GDGKEDQH IE+LTQE+T +LK+SEK+LQ+LSAAGPSEDSNVRKNVQRSLATDLQNLSME
Sbjct: 121 GDGKEDQHQIETLTQEVTFLLKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSME 180

Query: 174 LRKKQSTYLKRLRQQKE 190
           LRKKQSTYLKRLR QKE
Sbjct: 181 LRKKQSTYLKRLRLQKE 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
TAIR|locus:2148513	322	SYP41 "syntaxin of plants 41"	0.887	0.586	0.778	4.5e-75
TAIR|locus:2078042	331	SYP43 "syntaxin of plants 43"	0.892	0.574	0.746	9.6e-73
TAIR|locus:505006427	323	SYP42 "syntaxin of plants 42"	0.887	0.585	0.625	1.9e-58
UNIPROTKB|F1NSX3	331	STX16 "Uncharacterized protein	0.582	0.374	0.406	6.5e-19
ZFIN|ZDB-GENE-060810-113	324	stx16 "syntaxin 16" [Danio rer	0.638	0.419	0.395	1.4e-18
MGI|MGI:1923396	326	Stx16 "syntaxin 16" [Mus muscu	0.582	0.380	0.403	3.6e-18
UNIPROTKB|E2RR62	297	STX16 "Uncharacterized protein	0.760	0.545	0.361	5.8e-18
RGD|1309423	326	Stx16 "syntaxin 16" [Rattus no	0.582	0.380	0.395	5.8e-18
UNIPROTKB|F1LRK6	273	Stx16 "Protein Stx16" [Rattus	0.582	0.454	0.395	5.8e-18
UNIPROTKB|F1M1S4	275	Stx16 "Protein Stx16" [Rattus	0.582	0.450	0.395	5.8e-18

TAIR|locus:2148513 SYP41 "syntaxin of plants 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 148/190 (77%), Positives = 174/190 (91%)

Query:     1 MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLS 60
             MATRNRTL++++YR++L++VR P S+S L  + +S   GPVIE+ ++SLLNPNR+YAP+S
Sbjct:     1 MATRNRTLLFRKYRNSLRSVRAPLSSSSLTGT-RSGGVGPVIEMASTSLLNPNRSYAPIS 59

Query:    61 TEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQ 120
             TEDPG SS+GA+TVGLPPAWVDVSEEI+ N+QRARTKMAEL +AHAKALMPSFGDGKEDQ
Sbjct:    60 TEDPGTSSKGAITVGLPPAWVDVSEEISVNIQRARTKMAELGKAHAKALMPSFGDGKEDQ 119

Query:   121 HAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQST 180
             H IESLTQEIT +LK+SEK+LQ+LSA+GPSEDSNVRKNVQRSLATDLQ LSMELRKKQST
Sbjct:   120 HNIESLTQEITFLLKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDLQLLSMELRKKQST 179

Query:   181 YLKRLRQQKE 190
             YLKRLRQQKE
Sbjct:   180 YLKRLRQQKE 189

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0005802 "trans-Golgi network" evidence=IDA;TAS

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0030140 "trans-Golgi network transport vesicle" evidence=TAS

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2078042 SYP43 "syntaxin of plants 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 147/197 (74%), Positives = 173/197 (87%)

Query:     1 MATRNRTLIYKRYRDALKTVRVP---TSTSPLQS----SGKSSCSGPVIELVNSSLLNPN 53
             MATRNRTL++++YR++L++VR P   +S+S L      +G  S  GPVIE+ ++SLLNPN
Sbjct:     1 MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEMASTSLLNPN 60

Query:    54 RNYAPLSTEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSF 113
             R+YAP+STEDPGNSSRG +TVGLPP WVDVSEEI+  +QRARTKMAEL +AHAKALMPSF
Sbjct:    61 RSYAPVSTEDPGNSSRGTITVGLPPDWVDVSEEISVYIQRARTKMAELGKAHAKALMPSF 120

Query:   114 GDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSME 173
             GDGKEDQH IE+LTQE+T +LK+SEK+LQ+LSAAGPSEDSNVRKNVQRSLATDLQNLSME
Sbjct:   121 GDGKEDQHQIETLTQEVTFLLKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSME 180

Query:   174 LRKKQSTYLKRLRQQKE 190
             LRKKQSTYLKRLR QKE
Sbjct:   181 LRKKQSTYLKRLRLQKE 197

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0007030 "Golgi organization" evidence=IGI

GO:0007034 "vacuolar transport" evidence=IGI

GO:0009306 "protein secretion" evidence=IGI

GO:1900150 "regulation of defense response to fungus" evidence=IGI

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005768 "endosome" evidence=IDA

TAIR|locus:505006427 SYP42 "syntaxin of plants 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 122/195 (62%), Positives = 149/195 (76%)

Query:     1 MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRN-YAPL 59
             MATRNRT +Y+++RDA K+ R P S S   S G     GPVIE+V+ S    N + YAPL
Sbjct:     1 MATRNRTTVYRKHRDACKSARAPLSLSASDSFG-----GPVIEMVSGSFSRSNHSSYAPL 55

Query:    60 STEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKED 119
             ++ DPG SS  A T+G+PPAWVD SEEI  N+Q+ R KM ELA+AH+KALMP+FGD K  
Sbjct:    56 NSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGI 115

Query:   120 QHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQS 179
                +E LT EIT++L++SEKRLQ LS  GPSE+SN+RKNVQRSLATDLQNLSMELR+KQS
Sbjct:   116 HREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQS 175

Query:   180 TYLKRLRQQKEVHEE 194
             TYLKRL+QQKE  +E
Sbjct:   176 TYLKRLQQQKEGQDE 190

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0005802 "trans-Golgi network" evidence=IDA;TAS

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0030140 "trans-Golgi network transport vesicle" evidence=TAS

GO:0007030 "Golgi organization" evidence=IGI

GO:0007034 "vacuolar transport" evidence=IGI

GO:0009306 "protein secretion" evidence=IGI

GO:1900150 "regulation of defense response to fungus" evidence=IGI

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

UNIPROTKB|F1NSX3 STX16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 52/128 (40%), Positives = 75/128 (58%)

Query:    72 VTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKAL-MPSFGDGKEDQHAIESLTQEI 130
             VT  LPP WVD ++EI  ++ R + KM ELA  H K L  P+  D  E++ AIE  TQEI
Sbjct:    76 VTKRLPPKWVDGADEIQYDIVRVKQKMKELASLHDKHLNRPTLDDSSEEERAIEITTQEI 135

Query:   131 TNILKRSEKRLQQLSAAGPS---EDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQ 187
             T +  R ++ +Q L +   +   +++ V +NV  SLA  LQ LS   R  QS YLKR++ 
Sbjct:   136 TQLFHRCQRAVQVLQSRSRTCTEQEARVLRNVVSSLAQSLQELSTNFRHAQSDYLKRMKS 195

Query:   188 QKEVHEEF 195
             ++E  + F
Sbjct:   196 REERSKHF 203

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

ZFIN|ZDB-GENE-060810-113 stx16 "syntaxin 16" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 57/144 (39%), Positives = 78/144 (54%)

Query:    72 VTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKAL-MPSFGDGKEDQHAIESLTQEI 130
             VT  LPP WV+  +EI   + R R KM ELA  H K +  P+  D  E++HAIE  TQEI
Sbjct:    70 VTKRLPPKWVEGVDEIQYEITRIRQKMKELASLHDKHMNRPTLDDSSEEEHAIEITTQEI 129

Query:   131 TNILKRSEKR---LQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQ 187
             T +  R ++    LQ  S     +++ +  NV  SLA  LQ LS+  R  QS YLKR++ 
Sbjct:   130 TQMFHRCQRAVTGLQTQSYHCTEQENRLLTNVVSSLAQSLQELSLNFRHTQSGYLKRMKN 189

Query:   188 QKEVHEEF----PCRSSIEPLALY 207
             ++E  + F    P     E +ALY
Sbjct:   190 REERSKHFFDSGPLVEEDEDIALY 213

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

MGI|MGI:1923396 Stx16 "syntaxin 16" [Mus musculus (taxid:10090)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 52/129 (40%), Positives = 73/129 (56%)

Query:    72 VTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKAL-MPSFGDGKEDQHAIESLTQEI 130
             VT   PP WVD  +EI  +V R + KM ELA  H K L  P+  D  E++HAIE  TQE+
Sbjct:    70 VTKRSPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEV 129

Query:   131 TNILKRSEKRLQQLSA----AGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLR 186
             T +  R ++ +Q L +    A   ++  + +NV  SLA  LQ LS   R  QS YLKR++
Sbjct:   130 TQLFHRCQRAVQALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRMK 189

Query:   187 QQKEVHEEF 195
              ++E  + F
Sbjct:   190 NREERSQHF 198

GO:0005484 "SNAP receptor activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0031201 "SNARE complex" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

UNIPROTKB|E2RR62 STX16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 64/177 (36%), Positives = 97/177 (54%)

Query:    24 TSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLSTEDPGNSSRGAVTVGLPPAWVDV 83
             T++SPL S   ++ S P+ +    +L++       +S  DP  ++ G VT   PP WVD 
Sbjct:    32 TTSSPLHSRSIAAVSLPLAD-DRMALVSG------ISL-DP-EAAIG-VTKRSPPKWVDG 81

Query:    84 SEEIATNVQRARTKMAELARAHAKAL-MPSFGDGKEDQHAIESLTQEITNILKRSEKRLQ 142
              +EI  +V R + KM ELA  H + L  P+  D  E +HAIE  TQEIT +  R ++ +Q
Sbjct:    82 VDEIQYDVGRIKLKMKELASLHDQHLNRPTLDDSSEQEHAIEITTQEITQLFHRCQRAVQ 141

Query:   143 QLSA----AGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVHEEF 195
              L +    A   ++  + +NV  SLA  LQ LS   R+ QS YLKR++ ++E  + F
Sbjct:   142 ALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRRAQSGYLKRMKNREERSQHF 198

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

RGD|1309423 Stx16 "syntaxin 16" [Rattus norvegicus (taxid:10116)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 51/129 (39%), Positives = 72/129 (55%)

Query:    72 VTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKAL-MPSFGDGKEDQHAIESLTQEI 130
             VT   PP WVD  +EI  +V R + KM ELA  H K L  P+  D  E++HAIE  TQE+
Sbjct:    70 VTKRSPPKWVDGVDEIQYDVGRIKQKMRELASLHDKHLNRPTLDDSSEEEHAIEITTQEV 129

Query:   131 TNILKRSEKRLQQLSAAG----PSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLR 186
             T +  R ++ +Q L +        ++  + +NV  SLA  LQ LS   R  QS YLKR++
Sbjct:   130 TQLFHRCQRAVQALPSRARRTCSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRMK 189

Query:   187 QQKEVHEEF 195
              ++E  + F
Sbjct:   190 NREERSQHF 198

GO:0005484 "SNAP receptor activity" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0031201 "SNARE complex" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

UNIPROTKB|F1LRK6 Stx16 "Protein Stx16" [Rattus norvegicus (taxid:10116)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 51/129 (39%), Positives = 72/129 (55%)

Query:    72 VTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKAL-MPSFGDGKEDQHAIESLTQEI 130
             VT   PP WVD  +EI  +V R + KM ELA  H K L  P+  D  E++HAIE  TQE+
Sbjct:    17 VTKRSPPKWVDGVDEIQYDVGRIKQKMRELASLHDKHLNRPTLDDSSEEEHAIEITTQEV 76

Query:   131 TNILKRSEKRLQQLSAAG----PSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLR 186
             T +  R ++ +Q L +        ++  + +NV  SLA  LQ LS   R  QS YLKR++
Sbjct:    77 TQLFHRCQRAVQALPSRARRTCSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRMK 136

Query:   187 QQKEVHEEF 195
              ++E  + F
Sbjct:   137 NREERSQHF 145

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1M1S4 Stx16 "Protein Stx16" [Rattus norvegicus (taxid:10116)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 51/129 (39%), Positives = 72/129 (55%)

Query:    72 VTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKAL-MPSFGDGKEDQHAIESLTQEI 130
             VT   PP WVD  +EI  +V R + KM ELA  H K L  P+  D  E++HAIE  TQE+
Sbjct:    67 VTKRSPPKWVDGVDEIQYDVGRIKQKMRELASLHDKHLNRPTLDDSSEEEHAIEITTQEV 126

Query:   131 TNILKRSEKRLQQLSAAG----PSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLR 186
             T +  R ++ +Q L +        ++  + +NV  SLA  LQ LS   R  QS YLKR++
Sbjct:   127 TQLFHRCQRAVQALPSRARRTCSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRMK 186

Query:   187 QQKEVHEEF 195
              ++E  + F
Sbjct:   187 NREERSQHF 195

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O65359	SYP41_ARATH	No assigned EC number	0.7789	0.8873	0.5869	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_602828.1	annotation not avaliable (322 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.2__2007__AT1G77140.1	annotation not avaliable (569 aa)					•	•	•		0.503
	fgenesh2_kg.1__3020__AT1G28490.1	annotation not avaliable (245 aa)					•	•	•		0.416

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	213
smart00503	117	smart00503, SynN, Syntaxin N-terminal domain	5e-15
pfam00804	103	pfam00804, Syntaxin, Syntaxin	5e-11
COG5325	283	COG5325, COG5325, t-SNARE complex subunit, syntaxi	6e-09

>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain

 Score = 68.1 bits (167), Expect = 5e-15
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 78  PAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGK------EDQHAIESLTQEIT 131
             + +  EEI  N+Q+    +AEL + H + L P   D +           I+ L +EI 
Sbjct: 4   DEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIR 63

Query: 132 NILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLR 186
             LK  EK   +  A+G + D   RK     L    + +  E ++ Q  Y +R +
Sbjct: 64  AKLKELEKENLENRASGSASDRT-RKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p. Length = 117

>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin

 Score = 57.0 bits (138), Expect = 5e-11
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 76  LPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILK 135
             P + D  EEI   +Q+ R  + EL + H + L     D KE +  +E LTQEI  + +
Sbjct: 1   DLPEFFDEVEEIREEIQKIRQNLEELQKLHKRILTAPDSD-KELREELEELTQEIKQLAR 59

Query: 136 RSEKRLQQLSAAGPSEDSNV--------RKNVQRSLATDLQNLS 171
             +K+L+ L     SE            RKN   +L+   +++ 
Sbjct: 60  AIKKKLKSLQQLNKSEQGLGHSSAVDRIRKNQLANLSKKFKDVL 103

Syntaxins are the prototype family of SNARE proteins. They usually consist of three main regions - a C-terminal transmembrane region, a central SNARE domain which is characteristic of and conserved in all syntaxins (pfam05739), and an N-terminal domain that is featured in this entry. This domain varies between syntaxin isoforms; in syntaxin 1A it is found as three alpha-helices with a left-handed twist. It may fold back on the SNARE domain to allow the molecule to adopt a 'closed' configuration that prevents formation of the core fusion complex - it thus has an auto-inhibitory role. The function of syntaxins is determined by their localisation. They are involved in neuronal exocytosis, ER-Golgi transport and Golgi-endosome transport, for example. They also interact with other proteins as well as those involved in SNARE complexes. These include vesicle coat proteins, Rab GTPases, and tethering factors. Length = 103

>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

 Score = 54.5 bits (131), Expect = 6e-09
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 74  VGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNI 133
             L P ++  +  +   +   R  ++ L + +AK   PSF D  E +  I+ L++++   
Sbjct: 30  DALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQD 89

Query: 134 LKRSEK----RLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQ 188
           L+R EK    + + L ++          N +      +Q  S + RK Q    K LR +
Sbjct: 90  LQRCEKILKTKYKNLQSSFLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNK 148

Length = 283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	100.0
PF00804	103	Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins	99.6
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	99.28
smart00503	117	SynN Syntaxin N-terminal domain. Three-helix domai	99.24
cd00179	151	SynN Syntaxin N-terminus domain; syntaxins are ner	98.57
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	98.5
PF14523	102	Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.	97.49
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	96.91
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	95.51
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	90.21
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	82.43

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-43  Score=309.17  Aligned_cols=173  Identities=50%  Similarity=0.718  Sum_probs=161.7

Q ss_pred             CccccchHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCceeecccccCCCCCCCCCCCCCCCCCCCCCccccCCCchHH
Q 028123            2 ATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLSTEDPGNSSRGAVTVGLPPAWV   81 (213)
Q Consensus         2 atRnrT~~F~~yR~~~~~~r~~~~~~~~~~~~~~~~~~~~ie~~~~~l~~~~~~~~~l~~~d~~~~~~~~~~~~lpP~Wv   81 (213)
                      ||||||.+|+.||+.++|+|.+.        |+.++.+|++||+ +++++.+..|.+.+++|           ++||.||
T Consensus         1 atRnrT~lF~~~Rn~~~~~r~~~--------~~~~~~d~~~e~~-~~lv~~~~~~~~~~~~d-----------~lpP~wv   60 (305)
T KOG0809|consen    1 ATRNRTELFLLYRNNASHNRQPL--------GDRSGDDPVIEMA-TSLVNEAEEGKTVSDED-----------GLPPAWV   60 (305)
T ss_pred             CcchHHHHHHHHHhhhhhhcccc--------ccccCcchhHHhH-hccccchhcCCcccccc-----------CCCCccc
Confidence            79999999999999999999875        2334589999999 88899899999999776           5899999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CchhHHHHHH
Q 028123           82 DVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAG---PSEDSNVRKN  158 (213)
Q Consensus        82 d~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~~---~~~E~~i~kN  158 (213)
                      |.++||++.+.+++.+|.+|.++|+||++|+|+|..++|++||.+|++||++|++|++.|+.+....   ++.|..+++|
T Consensus        61 d~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~~n  140 (305)
T KOG0809|consen   61 DVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLRKN  140 (305)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998854   7889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 028123          159 VQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVHEE  194 (213)
Q Consensus       159 vq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~e~~~~  194 (213)
                      ++.+||.+||.+|.+||..|++||++|+.++++...
T Consensus       141 ~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~  176 (305)
T KOG0809|consen  141 AQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQE  176 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccc
Confidence            999999999999999999999999999999998643

>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane

Probab=99.60  E-value=1.2e-14  Score=108.33  Aligned_cols=93  Identities=30%  Similarity=0.501  Sum_probs=84.4

Q ss_pred             CchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------C
Q 028123           77 PPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA--------G  148 (213)
Q Consensus        77 pP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~--------~  148 (213)
                      ||.|++.+++|...|..|+.++.+|.+||.++|.+.+.| +..+.+|+.+|.+|+++|+.|+..|+.|...        .
T Consensus         2 ~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d-~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~   80 (103)
T PF00804_consen    2 MPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQD-SELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEP   80 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence            799999999999999999999999999999999987744 6778899999999999999999999999765        2


Q ss_pred             CchhHHHHHHHHHHHHHHHHHH
Q 028123          149 PSEDSNVRKNVQRSLATDLQNL  170 (213)
Q Consensus       149 ~~~E~~i~kNvq~sLA~kLQ~L  170 (213)
                      +..+.++++|...+|+.+++++
T Consensus        81 ~~~~~ri~~nq~~~L~~kf~~~  102 (103)
T PF00804_consen   81 SSNEVRIRKNQVQALSKKFQEV  102 (103)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH
Confidence            5779999999999999999876

Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=99.28  E-value=3.5e-11  Score=106.36  Aligned_cols=116  Identities=23%  Similarity=0.273  Sum_probs=105.7

Q ss_pred             cccCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Q 028123           72 VTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA----  147 (213)
Q Consensus        72 ~~~~lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~----  147 (213)
                      ....+||.|++..-+|+..+..++..+..|.+.++||++|.|.|..+.+.+|+.|+..|++.|.+|++.++.--..    
T Consensus        28 e~~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s~  107 (283)
T COG5325          28 EDDALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQSS  107 (283)
T ss_pred             hhhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457999999999999999999999999999999999999999999999999999999999999999988875432    


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028123          148 GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQ  187 (213)
Q Consensus       148 ~~~~E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~  187 (213)
                      ..-.+..+-.|...+.++++|..+.+||+.|..|+++++.
T Consensus       108 ~~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~  147 (283)
T COG5325         108 FLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRN  147 (283)
T ss_pred             HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHh
Confidence            1236778889999999999999999999999999999954

>smart00503 SynN Syntaxin N-terminal domain

Probab=99.24  E-value=2.6e-10  Score=87.39  Aligned_cols=109  Identities=26%  Similarity=0.402  Sum_probs=90.5

Q ss_pred             CchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------Cc
Q 028123           77 PPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAG------PS  150 (213)
Q Consensus        77 pP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~~------~~  150 (213)
                      +|.|++.+++|...|..|+..+.+|.++|.+.+.+.+.+ ......++.+..+|..+.+.|...|+.+....      ++
T Consensus         3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~   81 (117)
T smart00503        3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDAD-KELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGS   81 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCC
Confidence            678999999999999999999999999999999876632 33345677777777777777777777776531      24


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028123          151 EDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLR  186 (213)
Q Consensus       151 ~E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk  186 (213)
                      .+..+++|+..+|+.+++++...|+..|+.|..+.|
T Consensus        82 ~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k  117 (117)
T smart00503       82 ASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK  117 (117)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999987653

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p

>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain

Probab=98.57  E-value=3.1e-06  Score=67.68  Aligned_cols=115  Identities=23%  Similarity=0.369  Sum_probs=98.7

Q ss_pred             CchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-------C
Q 028123           77 PPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAG-------P  149 (213)
Q Consensus        77 pP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~~-------~  149 (213)
                      .|.|.+.+++|...|..|...+..|.++|..-+-. -+.....-..++.+..+|..+++.+...|+.|....       .
T Consensus         1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~-~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~   79 (151)
T cd00179           1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTA-PDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNG   79 (151)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            37799999999999999999999999999875532 222445567899999999999999999999987632       2


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 028123          150 SEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVH  192 (213)
Q Consensus       150 ~~E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~e~~  192 (213)
                      ..+.++++|....|..+++++-..|...|..|-.+.|.+-++.
T Consensus        80 s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq  122 (151)
T cd00179          80 SSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQ  122 (151)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478899999999999999999999999999999998887765

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=6.9e-06  Score=73.54  Aligned_cols=94  Identities=22%  Similarity=0.314  Sum_probs=80.7

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cC--C-ch
Q 028123           79 AWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSA----AG--P-SE  151 (213)
Q Consensus        79 ~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~----~~--~-~~  151 (213)
                      .|...+..|...|+..-.||++|..|.++  ++-|+|...   ||.+||+-|.+.+......|-.+..    .+  + .+
T Consensus        42 eF~~~A~~Ig~~is~T~~kl~kLa~lAKr--ks~f~Dr~V---eI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~  116 (311)
T KOG0812|consen   42 EFNKKASRIGKEISQTGAKLEKLAQLAKR--KSLFDDRPV---EIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQ  116 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccCcch---hhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchH
Confidence            68999999999999999999999999999  889999987   7999999999998887776665543    12  2 22


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028123          152 DSNVRKNVQRSLATDLQNLSMELRKK  177 (213)
Q Consensus       152 E~~i~kNvq~sLA~kLQ~LS~~FRk~  177 (213)
                      -..+-+||+-.|-++|.++|..|...
T Consensus       117 ~~~Hs~~vV~~Lqs~la~is~~fk~V  142 (311)
T KOG0812|consen  117 LVQHSKNVVVSLQSKLANISKDFKDV  142 (311)
T ss_pred             hhhhhHHHHHHHHHHHHhhhhhHHHH
Confidence            36788999999999999999999874

>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A

Probab=97.49  E-value=0.0076  Score=45.17  Aligned_cols=99  Identities=19%  Similarity=0.327  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCchhHHHHHHHHHHHHH
Q 028123           87 IATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA-GPSEDSNVRKNVQRSLAT  165 (213)
Q Consensus        87 i~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~-~~~~E~~i~kNvq~sLA~  165 (213)
                      |...|..|...+..|.++-..  +-+-.|..+.-..|..+...+..+++.....|+.+... .......-.+-.+-.|+.
T Consensus         1 is~~l~~in~~v~~l~k~~~~--lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~   78 (102)
T PF14523_consen    1 ISSNLFKINQNVSQLEKLVNQ--LGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSR   78 (102)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHH--H-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHH--hCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence            345677888888888887766  34668888888899999999999999999999999876 455667777888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 028123          166 DLQNLSMELRKKQSTYLKRLRQ  187 (213)
Q Consensus       166 kLQ~LS~~FRk~Q~~YL~~Lk~  187 (213)
                      .++.+...|.+.|+.|..+-+.
T Consensus        79 df~~~l~~fq~~q~~~~~~~k~  100 (102)
T PF14523_consen   79 DFKEALQEFQKAQRRYAEKEKQ  100 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999988654

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.042  Score=49.89  Aligned_cols=114  Identities=23%  Similarity=0.370  Sum_probs=89.9

Q ss_pred             chHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------CC
Q 028123           78 PAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA--------GP  149 (213)
Q Consensus        78 P~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~--------~~  149 (213)
                      -.|+..+++|...+..+...+++|.++|.+-|. .-...+..-++++.+..+|.+.=+..+.+|+.+...        +.
T Consensus        36 ~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~-~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~  114 (297)
T KOG0810|consen   36 EEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLH-SPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRS  114 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence            459999999999999999999999999966553 222233345577777777777777777777777552        24


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 028123          150 SEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVH  192 (213)
Q Consensus       150 ~~E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~e~~  192 (213)
                      +....++++--..+..+|.++-..|+..|.+|-.+.+.+-.+.
T Consensus       115 ~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rq  157 (297)
T KOG0810|consen  115 SAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQ  157 (297)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999988877665543

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.51  E-value=0.86  Score=40.93  Aligned_cols=110  Identities=18%  Similarity=0.215  Sum_probs=98.9

Q ss_pred             CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHH
Q 028123           75 GLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSN  154 (213)
Q Consensus        75 ~lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~~~~~E~~  154 (213)
                      .-|+.+-....+|...+..|......|.+.+..  +-++.|..++-..++.....+.++.+.....|+.+......++.+
T Consensus        14 ~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~--lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~~~~~~   91 (269)
T KOG0811|consen   14 EEPFDFQQLAQEIAANIQRINQQVLSLLRFLNS--LGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRLESDLR   91 (269)
T ss_pred             CCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHH--cCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence            357788999999999999999999999999998  568889888888899999999999999999999998866677889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028123          155 VRKNVQRSLATDLQNLSMELRKKQSTYLKRLR  186 (213)
Q Consensus       155 i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk  186 (213)
                      ..+.+...|+......-..|-+.|+.--...+
T Consensus        92 ~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek  123 (269)
T KOG0811|consen   92 QLKIQLDKLVDEFSAALKEFQKVQRKSAEREK  123 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence            99999999999999999999999998877765

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.21  E-value=12  Score=32.91  Aligned_cols=112  Identities=17%  Similarity=0.308  Sum_probs=79.8

Q ss_pred             CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCh-H---HHHHHHHHHHHHHHHHHHHHHHHHHhhh--cC
Q 028123           75 GLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGK-E---DQHAIESLTQEITNILKRSEKRLQQLSA--AG  148 (213)
Q Consensus        75 ~lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~-~---ee~eIE~lT~eIt~lf~~~e~~Ik~i~~--~~  148 (213)
                      +.||.|...=-++...-..+..||....++-+. -.-+|++++ .   .++.-..++.+|..++.+.......+..  ..
T Consensus         2 ~~~s~we~LRkqArslE~~ld~kL~syskl~as-~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~~s   80 (231)
T KOG3208|consen    2 GSSSSWEALRKQARSLENQLDSKLVSYSKLGAS-THGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCASS   80 (231)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhccC
Confidence            368999999999999999999999999999887 335676532 1   2345677778888888887777777765  22


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028123          149 PSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQK  189 (213)
Q Consensus       149 ~~~E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~  189 (213)
                      +.....+-.-++++ -..||+..++||+.=.+|.. ++.++
T Consensus        81 ~a~~aa~~htL~RH-rEILqdy~qef~rir~n~~a-~~e~~  119 (231)
T KOG3208|consen   81 PANSAAVMHTLQRH-REILQDYTQEFRRIRSNIDA-KRERE  119 (231)
T ss_pred             CCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            33333333444443 46799999999999999544 44433

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=82.43  E-value=24  Score=31.58  Aligned_cols=110  Identities=14%  Similarity=0.279  Sum_probs=81.3

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cc-hhHHH
Q 028123           79 AWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDG-KEDQHAIESLTQEITNILKRSEKRLQQLSAAG-PS-EDSNV  155 (213)
Q Consensus        79 ~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~-~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~~-~~-~E~~i  155 (213)
                      .|......++..++.+...+.+...+|+.-|.-.|... ...-+.++.-+.+.+.|=......|+.....+ .. .-..=
T Consensus        22 ~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~ihl~~k~aQ  101 (280)
T COG5074          22 TFMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGIHLANKQAQ  101 (280)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Confidence            35567888999999999999999999999886666653 34466788888888888888888888877643 11 11222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 028123          156 RKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVH  192 (213)
Q Consensus       156 ~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~e~~  192 (213)
                      .+|+++    ++-++-..||..|++|=..-+.+--++
T Consensus       102 ae~~r~----Kf~~~I~~yr~i~~~yree~~e~~rrQ  134 (280)
T COG5074         102 AENVRQ----KFLKLIQDYRIIDSNYREEEKEQARRQ  134 (280)
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            455544    566777889999999987766655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	213
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	4e-16
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	2e-15
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	5e-12

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267

 Score = 74.0 bits (181), Expect = 4e-16
 Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 9/139 (6%)

Query: 60  STEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKED 119
            ++D  + +           + +  EEI   + +    + E+ R H+  L     D ++ 
Sbjct: 13  DSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPD-EKT 71

Query: 120 QHAIESLTQEITNILKRSEKRLQQLSAA--------GPSEDSNVRKNVQRSLATDLQNLS 171
           +  +E L  +I     +   +L+ +  +          S D  +RK    +L+     + 
Sbjct: 72  KEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVM 131

Query: 172 MELRKKQSTYLKRLRQQKE 190
            E    QS Y +R + + +
Sbjct: 132 SEYNATQSDYRERCKGRIQ 150

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279

 Score = 72.1 bits (176), Expect = 2e-15
 Identities = 20/162 (12%), Positives = 53/162 (32%), Gaps = 14/162 (8%)

Query: 43  ELVNSSLLNPNRNYAPLSTEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELA 102
           ++   +      + A  +      +S  A        + +  + I  N++     + ++A
Sbjct: 9   QMAAENQPAEASDAAGGAEAQIEETSLSAQPEPFMADFFNRVKRIRDNIEDIEQAIEQVA 68

Query: 103 RAHAKALM-PSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA-------------G 148
           + H ++L+  S  D       ++     I+ +  +    L+Q+                 
Sbjct: 69  QLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGT 128

Query: 149 PSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKE 190
            S D  +R++   SL+     +       Q+   +R  +   
Sbjct: 129 VSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVA 170

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196

 Score = 61.6 bits (149), Expect = 5e-12
 Identities = 10/112 (8%), Positives = 39/112 (34%), Gaps = 3/112 (2%)

Query: 85  EEIATNVQRARTKMAELARAHAKALM-PSFGDGKEDQHAIESLTQEITNILKRSEKRLQQ 143
            +I  ++ +    + ++   H + L   +       +H++++   + T++  + +  ++ 
Sbjct: 12  SQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKS 71

Query: 144 LSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVHEEF 195
                       ++    +       L  + R   S Y +  ++Q +     
Sbjct: 72  AQRD--GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMI 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	213
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	99.71
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	99.67
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	99.51
1ez3_A	127	Syntaxin-1A; three helix bundle, endocytosis/exocy	99.49
1s94_A	180	S-syntaxin; three helix bundle, structural plastic	99.3
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	98.16
2dnx_A	130	Syntaxin-12; snare, HABC domain, UP and DOWN three	97.77
1hs7_A	97	Syntaxin VAM3; UP-and-DOWN three-helix bundle inse	93.03

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=99.71  E-value=7.4e-17  Score=133.49  Aligned_cols=114  Identities=10%  Similarity=0.196  Sum_probs=104.5

Q ss_pred             CchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHH
Q 028123           77 PPAWVDVSEEIATNVQRARTKMAELARAHAKALM-PSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNV  155 (213)
Q Consensus        77 pP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~-p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~~~~~E~~i  155 (213)
                      ||.|++.+++|...|..|+.++.+|.++|.++|. |.+++......+|+.++.+|+++|+.|+..|+.|.....  +.++
T Consensus         4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~--~~r~   81 (196)
T 1fio_A            4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI--HDTN   81 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhhH
Confidence            8999999999999999999999999999999997 666665677889999999999999999999999987542  4689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 028123          156 RKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVH  192 (213)
Q Consensus       156 ~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~e~~  192 (213)
                      ++|++.+|+.++++++..||+.|+.|++++|.+.++.
T Consensus        82 ~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq  118 (196)
T 1fio_A           82 KQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQ  118 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987754

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=99.67  E-value=5.5e-16  Score=135.67  Aligned_cols=118  Identities=14%  Similarity=0.246  Sum_probs=107.9

Q ss_pred             CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------
Q 028123           75 GLPPAWVDVSEEIATNVQRARTKMAELARAHAKALM-PSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA------  147 (213)
Q Consensus        75 ~lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~-p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~------  147 (213)
                      ..+|.|++.+++|...|..|..++.+|.+||+++|. |.|+|......+|+.++.+|+++|+.|+..|+.|...      
T Consensus        41 ~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~  120 (279)
T 2xhe_B           41 PFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQ  120 (279)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            578999999999999999999999999999999988 9998877788899999999999999999999998751      


Q ss_pred             ------CCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 028123          148 ------GPSE-DSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVH  192 (213)
Q Consensus       148 ------~~~~-E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~e~~  192 (213)
                            ++.. |.++++|++.+|+.+|++++..||+.|+.|.+++|.+..+.
T Consensus       121 ~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~  172 (279)
T 2xhe_B          121 EGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQ  172 (279)
T ss_dssp             HHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred             cccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  2233 77999999999999999999999999999999999887764

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=99.51  E-value=5.4e-13  Score=116.48  Aligned_cols=115  Identities=19%  Similarity=0.344  Sum_probs=102.4

Q ss_pred             CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------
Q 028123           75 GLPPAWVDVSEEIATNVQRARTKMAELARAHAKALM-PSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA------  147 (213)
Q Consensus        75 ~lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~-p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~------  147 (213)
                      ...|.|++.+++|...|..|...+.+|.++|.+.|. |.+++  ....+|+.++.+|+++++.|...|+.|...      
T Consensus        28 ~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~--~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~  105 (267)
T 1dn1_B           28 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDE--KTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG  105 (267)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            357889999999999999999999999999999987 55544  456689999999999999999999998652      


Q ss_pred             --CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 028123          148 --GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEV  191 (213)
Q Consensus       148 --~~~~E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~e~  191 (213)
                        +++.|.++++|+..+|+.+|+++...|++.|..|..++|.+-++
T Consensus       106 ~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~R  151 (267)
T 1dn1_B          106 LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR  151 (267)
T ss_dssp             TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              35678899999999999999999999999999999999986554

>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*

Probab=99.49  E-value=8.6e-13  Score=102.19  Aligned_cols=111  Identities=20%  Similarity=0.362  Sum_probs=99.7

Q ss_pred             CCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------
Q 028123           76 LPPAWVDVSEEIATNVQRARTKMAELARAHAKALM-PSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA-------  147 (213)
Q Consensus        76 lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~-p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~-------  147 (213)
                      .+|.|++.+++|...|..|+..+.+|.++|.+.|. |..  ......+++.++.+|+++++.|+..|+.|...       
T Consensus         6 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~--~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~   83 (127)
T 1ez3_A            6 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            47889999999999999999999999999999986 664  33466799999999999999999999998752       


Q ss_pred             -CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028123          148 -GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQ  188 (213)
Q Consensus       148 -~~~~E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r  188 (213)
                       +++.+.++++|+..+|..+|+++...|+..|..|..+++.|
T Consensus        84 ~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r  125 (127)
T 1ez3_A           84 NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR  125 (127)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             34567899999999999999999999999999999999875

>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1

Probab=99.30  E-value=8.4e-12  Score=102.54  Aligned_cols=116  Identities=14%  Similarity=0.265  Sum_probs=95.6

Q ss_pred             CCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------
Q 028123           76 LPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA--------  147 (213)
Q Consensus        76 lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~--------  147 (213)
                      ..|.|++.+++|...|..|...+.+|.++|.+.|. ++++......+++.++.+|+++++.|+..|+.|...        
T Consensus        37 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~-~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~  115 (180)
T 1s94_A           37 FMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILS-APQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSN  115 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence            34679999999999999999999999999999876 455655667899999999999999999999999752        


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 028123          148 GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVH  192 (213)
Q Consensus       148 ~~~~E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~e~~  192 (213)
                      .++.+.++++|+..+|..+++++...|+..|..|..++|.+-++.
T Consensus       116 ~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq  160 (180)
T 1s94_A          116 KSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKRQ  160 (180)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC----
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            245677999999999999999999999999999999998876654

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=98.16  E-value=0.0001  Score=61.84  Aligned_cols=113  Identities=19%  Similarity=0.325  Sum_probs=94.7

Q ss_pred             CCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------
Q 028123           76 LPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA--------  147 (213)
Q Consensus        76 lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~--------  147 (213)
                      .-+.|++.+++|...|..|...+.+|.++|.+.+.. ..+......+|+.++.+|+.++..|...++.|...        
T Consensus        41 ~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~  119 (279)
T 3c98_B           41 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILAS-PNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLN  119 (279)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-SSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            456899999999999999999999999999987753 33334445689999999999999999888877541        


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028123          148 GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQK  189 (213)
Q Consensus       148 ~~~~E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~  189 (213)
                      ....+...+.|....||..+..+...|...|+.|...++...
T Consensus       120 ~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~ev  161 (279)
T 3c98_B          120 RSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI  161 (279)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            245678899999999999999999999999999997766543

>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.77  E-value=0.0017  Score=50.66  Aligned_cols=111  Identities=13%  Similarity=0.201  Sum_probs=94.1

Q ss_pred             CCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---Cchh
Q 028123           76 LPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAG---PSED  152 (213)
Q Consensus        76 lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~~---~~~E  152 (213)
                      -||.|-+..+.|...|.+|...+..|.++-+. |. +=-|..+.-..|-.+...+..+++.+...|+.+..-.   ...+
T Consensus         8 d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~-LG-T~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~   85 (130)
T 2dnx_A            8 QLRDFSSIIQTCSGNIQRISQATAQIKNLMSQ-LG-TKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSE   85 (130)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC-SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence            38999999999999999999999999998544 33 3346777788999999999999999999999998853   3445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028123          153 SNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQ  188 (213)
Q Consensus       153 ~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r  188 (213)
                      .+-.+=.+..|+.+++..-..|.+.|+.|..+-|.-
T Consensus        86 ~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~  121 (130)
T 2dnx_A           86 QRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKES  121 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            566666788899999999999999999999987653

>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=93.03  E-value=2  Score=31.81  Aligned_cols=88  Identities=22%  Similarity=0.265  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHH
Q 028123           84 SEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIE-SLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRS  162 (213)
Q Consensus        84 ~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE-~lT~eIt~lf~~~e~~Ik~i~~~~~~~E~~i~kNvq~s  162 (213)
                      ..|....+..+...|.+|+++-.+  +-+=-|..+....|+ .+...+.++-++.. .+..+.             -+--
T Consensus         5 ~~d~~~li~t~s~niq~l~k~~~q--lGTkrD~~~LR~~l~~~l~~~~~~L~k~~~-~l~~l~-------------qkeR   68 (97)
T 1hs7_A            5 TKELSNLIETFAEQSRVLEKECTK--IGSKRDSKELRYKIETELIPNCTSVRDKIE-SNILIH-------------QNGK   68 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--TTSSSCCHHHHHHHHHTHHHHHHHHHHHHH-HSTHHH-------------HCHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHH--hCCCcchHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc-------------hhhH
Confidence            356677778888888888777766  566667777777788 77777666666665 222221             2566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028123          163 LATDLQNLSMELRKKQSTYLKRLRQ  187 (213)
Q Consensus       163 LA~kLQ~LS~~FRk~Q~~YL~~Lk~  187 (213)
                      |..++..+...|...|+.|-.+-+.
T Consensus        69 L~~dF~~l~~~fQ~~qr~y~ek~~e   93 (97)
T 1hs7_A           69 LSADFKNLKTKYQSLQQSYNQRKSL   93 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8899999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	213
d1fioa_	196	a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c	1e-15

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.2 bits (171), Expect = 1e-15
 Identities = 10/119 (8%), Positives = 42/119 (35%), Gaps = 3/119 (2%)

Query: 78  PAWVDVSEEIATNVQRARTKMAELARAHAKALM-PSFGDGKEDQHAIESLTQEITNILKR 136
             +++   +I  ++ +    + ++   H + L   +       +H++++   + T++  +
Sbjct: 5   VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFK 64

Query: 137 SEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVHEEF 195
            +  ++             ++    +       L  + R   S Y +  ++Q +     
Sbjct: 65  LKNEIKSAQRD--GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMI 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	213
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.29
d1ez3a_	124	Syntaxin 1A N-terminal domain {Rat (Rattus norvegi	98.7

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=2.1e-11  Score=96.50  Aligned_cols=113  Identities=9%  Similarity=0.197  Sum_probs=100.5

Q ss_pred             chHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHH
Q 028123           78 PAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGD-GKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVR  156 (213)
Q Consensus        78 P~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD-~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~~~~~E~~i~  156 (213)
                      +.|++.+++|...|..|+..+..|.++|++.+.+.+.+ ......+|+.++.+|+.++++|+..++.+...  ..+.+++
T Consensus         5 ~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~~   82 (196)
T d1fioa_           5 VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD--GIHDTNK   82 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccchHHH
Confidence            56999999999999999999999999999988766554 35567899999999999999999999998764  3456899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 028123          157 KNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVH  192 (213)
Q Consensus       157 kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~e~~  192 (213)
                      +|+...|+.+|++++..|+..|..|..++|.+..+.
T Consensus        83 ~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~  118 (196)
T d1fioa_          83 QAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQ  118 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999986654

>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 1A N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=3.8e-07  Score=68.58  Aligned_cols=109  Identities=20%  Similarity=0.380  Sum_probs=94.9

Q ss_pred             chHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------C
Q 028123           78 PAWVDVSEEIATNVQRARTKMAELARAHAKALM-PSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA--------G  148 (213)
Q Consensus        78 P~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~-p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~--------~  148 (213)
                      |.|++.+++|...|..|...+.+|..+|.+-|. |.  ..+....+++.+..+|...-+.|...|+.|...        .
T Consensus         6 ~~Ff~eV~~Ir~~I~~i~~~v~~i~~~~~~~l~~~~--~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~   83 (124)
T d1ez3a_           6 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPN--PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR   83 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence            579999999999999999999999999998875 43  233446689999999999999999999988541        3


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028123          149 PSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQ  188 (213)
Q Consensus       149 ~~~E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r  188 (213)
                      ++.+.++++|...+|..++.++-..|...|..|=..++.+
T Consensus        84 ~s~~~Rir~~q~~~L~~kf~e~m~~yq~~q~~yr~~~k~r  123 (124)
T d1ez3a_          84 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR  123 (124)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5678999999999999999999999999999999988764