Citrus Sinensis ID: 028141

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE
Secondary Structure (PSIPRED)
ccccHHHHccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccEEEEEEcccEEEEEEcccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHcccccccccEEEcccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHccccccccccccccccccccEEEEEEccccccEEHEcHHHHccHHHHHHHHHHHHcccEEcccccccccccccHHHHHHHccccccEcEEEcccccEEEEcccccc
Coil and Loop (DISEMBL)
MINFEATElrlglpggnggsseggggggggekaknnningmkrgFADTVVDLKLnlstkesggidviektkgksasatgatdlskppaksqvvgwppvrsfRKNIMAVQkdneegdnkassssssnVAFVKVsmdgapylrKVDLKLYKSYQELSDALGKMfssftigncgsqgmkdfmnesklidllngsdyvptyedkdgdwmlvgdvpwe
Flexible Loop (DISEMBL)
MINFEATELrlglpggnggssegggggggGEKAKNNNINGMKRGFADTVVDLKLNlstkesggidviektkgksasatgatdlskppaksqvvgwppvrSFRKNIMAVQKdneegdnkassssssnvafVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYvptyedkdgdwmLVGDVPWE
Low Complexity Region (SEG)
MINFEATELRLGLPggnggsseggggggggekaknnningMKRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAssssssNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE
Disordered region (IsUnstruct)
********************************************FADTVVDLKLN************************************************************************AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDV***
Disordered Region (DISOPRED)
MINFEATELRLGL*******************************************************************************************************************FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG**********************SDYVPTYEDKDGDWMLVGDVPW*
Disordered Region (DISEMBL)
MINFEATELRLGLPGGNG************EKAKNNNINGMKRGFADTVVDLKLNLSTKESGGIDVIEKT**********************VGWPPVRSFRKNIMAVQ****************NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE
Disordered Region (DISPRO)
*INFEATELRLGLPG**********************************************************************PPAKSQVVGWPPVRSFRKNIMAVQ***************SNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	213	2.2.26 [Sep-21-2011]
O24407	236	Auxin-responsive protein	yes	no	0.901	0.813	0.653	4e-68
P13089	243	Auxin-induced protein AUX	no	no	0.906	0.794	0.614	2e-65
Q38832	228	Auxin-responsive protein	no	no	0.915	0.855	0.601	1e-62
Q38825	243	Auxin-responsive protein	no	no	0.934	0.818	0.563	2e-60
P0C132	277	Auxin-responsive protein	yes	no	0.943	0.725	0.515	7e-53
P93830	229	Auxin-responsive protein	no	no	0.854	0.794	0.547	8e-53
Q38826	321	Auxin-responsive protein	no	no	0.976	0.647	0.473	6e-49
Q9ZSY8	305	Auxin-responsive protein	no	no	0.976	0.681	0.470	3e-46
Q38827	338	Auxin-responsive protein	no	no	0.967	0.609	0.444	5e-44
Q75GK0	233	Auxin-responsive protein	no	no	0.826	0.755	0.432	9e-42

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  257 bits (657), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 147/225 (65%), Positives = 165/225 (73%), Gaps = 33/225 (14%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFEATELRLGLPGGN G          GE A  NN    KRGF++TV DLKLNLS   
Sbjct: 1   MINFEATELRLGLPGGNHG----------GEMAGKNN---GKRGFSETV-DLKLNLS--- 43

Query: 61  SGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQK----DNEEGD 116
           S  +D + K   ++        + KPPAK+QVVGWPPVRSFRKN+M+ QK    D  EG+
Sbjct: 44  STAMDSVSKVDLENMKEK----VVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGN 99

Query: 117 NKASSSS--------SSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
           +K S SS         + VA+VKVSMDGAPYLRK+DLKLYK+YQ+LS+AL KMFSSFTIG
Sbjct: 100 DKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIG 159

Query: 169 NCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
           N G QGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE
Sbjct: 160 NYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 204

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1

 Score =  248 bits (634), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 140/228 (61%), Positives = 157/228 (68%), Gaps = 35/228 (15%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADT----------VVD 51
           + FE TELRLGLPG NGG+ E               +   KRGF++T           VD
Sbjct: 1   MGFEETELRLGLPG-NGGTEE---------------VLIRKRGFSETETGHEDESATTVD 44

Query: 52  LKLNLSTKESGGI-----DVIEKTKGKSASATG-ATDLSKPPAKSQVVGWPPVRSFRKNI 105
           L LNLS+KE+        D  +K K      T    D +KPPAK+QVVGWPPVRSFRKN+
Sbjct: 45  LMLNLSSKEAATTAAAAADPTDKHKTLPKEKTLLPADPAKPPAKTQVVGWPPVRSFRKNM 104

Query: 106 MAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSF 165
           +AVQK   E   K   +SS N +FVKVSMDGAPYLRKVDLK+YKSY+ELSD+LGKMFSSF
Sbjct: 105 LAVQKSVGEESEK---NSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSF 161

Query: 166 TIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
           T GNC SQGMKDFMNESKL DLLN SDYVPTYEDKDGDWMLVGDVPWE
Sbjct: 162 TFGNCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWE 209

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Glycine max (taxid: 3847)

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  239 bits (609), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/211 (60%), Positives = 150/211 (71%), Gaps = 16/211 (7%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           +N + TEL LGLPGG          G G            KRGF++TV DLKLNL + + 
Sbjct: 1   MNLKETELCLGLPGGTETVESPAKSGVGN-----------KRGFSETV-DLKLNLQSNKQ 48

Query: 62  GGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASS 121
           G +D+   T G     T   D SKPPAK+QVVGWPPVR++RKN+MA QK  E    +A S
Sbjct: 49  GHVDL--NTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEA--EEAMS 104

Query: 122 SSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNE 181
           S    VAFVKVSMDGAPYLRKVDLK+Y SY++LSDAL KMFSSFT+G+ G+QGM DFMNE
Sbjct: 105 SGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNE 164

Query: 182 SKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 212
           SK++DLLN S+YVP+YEDKDGDWMLVGDVPW
Sbjct: 165 SKVMDLLNSSEYVPSYEDKDGDWMLVGDVPW 195

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38825|IAA7_ARATH Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1

 Score =  232 bits (591), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/220 (56%), Positives = 150/220 (68%), Gaps = 21/220 (9%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           ++N +ATEL LGLPGG            G            KRGF++TV DL LNL + +
Sbjct: 5   LMNLKATELCLGLPGGAEAVESPAKSAVGS-----------KRGFSETV-DLMLNLQSNK 52

Query: 61  SGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAS 120
            G +D ++         T   D SKPPAK+QVVGWPPVR++RKN+M  QK +  G  +AS
Sbjct: 53  EGSVD-LKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSS-GAEEAS 110

Query: 121 SS-------SSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQ 173
           S         ++    VKVSMDGAPYLRKVDLK+YKSYQ+LSDAL KMFSSFT+GN G+Q
Sbjct: 111 SEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQ 170

Query: 174 GMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
           GM DFMNESKL++LLN S+YVP+YEDKDGDWMLVGDVPWE
Sbjct: 171 GMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWE 210

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C132|IAA30_ORYSJ Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1

 Score =  206 bits (525), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 130/252 (51%), Positives = 154/252 (61%), Gaps = 51/252 (20%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLS---- 57
           + FEATELRLGLPGG G              A     +  KRGFA+T +DLKL L     
Sbjct: 5   LAFEATELRLGLPGGGGDGD---------AAAAAARSSSGKRGFAET-IDLKLKLEPAAA 54

Query: 58  -------------TKESGGIDVI------------------EKTKGKSASATGATDLSKP 86
                              +D++                  +++  +S+  T A D  KP
Sbjct: 55  AVDDDDDKEEAAADDREKKVDIVGADNDDASPPAAAAAGGMKRSPSQSSVVTAAADPEKP 114

Query: 87  PA-KSQVVGWPPVRSFRKNIMAVQ----KDNEEGDNKASSSSSSNVAFVKVSMDGAPYLR 141
            A K+QVVGWPPVRS+RKNI+AVQ    KD  +G    S + ++  AFVKVSMDGAPYLR
Sbjct: 115 RAPKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLR 174

Query: 142 KVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKD 201
           KVDLK+YKSY ELS AL KMFSSFTIGNCGS G+ + MNESK+ DLLNGS+YVPTYEDKD
Sbjct: 175 KVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGV-NGMNESKIADLLNGSEYVPTYEDKD 233

Query: 202 GDWMLVGDVPWE 213
           GDWMLVGDVPWE
Sbjct: 234 GDWMLVGDVPWE 245

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P93830|IAA17_ARATH Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2

 Score =  206 bits (525), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 120/219 (54%), Positives = 145/219 (66%), Gaps = 37/219 (16%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE- 60
           +N   TEL LGLPGG+  +                 + G KRGF++TV DLKLNL+ +  
Sbjct: 7   LNLRETELCLGLPGGDTVAP----------------VTGNKRGFSETV-DLKLNLNNEPA 49

Query: 61  ----SGGIDVIE-KTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIM-AVQKDNEE 114
               S   DV+   +K KSA      D +KPPAK+QVVGWPPVRS+RKN+M + QK    
Sbjct: 50  NKEGSTTHDVVTFDSKEKSACPK---DPAKPPAKAQVVGWPPVRSYRKNVMVSCQK---- 102

Query: 115 GDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG-NCGSQ 173
                SS      AFVKVSMDGAPYLRK+DL++YKSY ELS+AL  MFSSFT+G + G +
Sbjct: 103 -----SSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEE 157

Query: 174 GMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 212
           GM DFMNE KL+DL+N  DYVP+YEDKDGDWMLVGDVPW
Sbjct: 158 GMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPW 196

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1

 Score =  193 bits (491), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 116/245 (47%), Positives = 142/245 (57%), Gaps = 37/245 (15%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGG--------------------GGGGEKAKNNNINGM 41
           +NF+ATELRLGLP       E   G                     G       N ++G 
Sbjct: 47  LNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGN 106

Query: 42  KRGFADTVVDLK-LNLSTKESGGIDVIEKTKGKSASATGATDLSK--------PPAKSQV 92
           KRGFADT  +   +  S +  GGI+++   K K  S +   + S         P AK+QV
Sbjct: 107 KRGFADTWDEFSGVKGSVRPGGGINMMLSPKVKDVSKSIQEERSHAKGGLNNAPAAKAQV 166

Query: 93  VGWPPVRSFRKNIMA--VQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKS 150
           VGWPP+RS+RKN MA    K+ +E D K        V FVKVSMDGAPYLRKVDL+ Y S
Sbjct: 167 VGWPPIRSYRKNTMASSTSKNTDEVDGKPGL----GVLFVKVSMDGAPYLRKVDLRTYTS 222

Query: 151 YQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVG 208
           YQ+LS AL KMFS FT+G CG  G   ++ M+E KL DLL+GS++V TYEDKDGDWMLVG
Sbjct: 223 YQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVG 282

Query: 209 DVPWE 213
           DVPWE
Sbjct: 283 DVPWE 287

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  184 bits (468), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/240 (47%), Positives = 142/240 (59%), Gaps = 32/240 (13%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNL----S 57
           +NF+ATELRLGLPG    S E            +  ++G KR F+D + D    +    S
Sbjct: 38  LNFKATELRLGLPGSE--SPERVDSRFLALNKSSCPVSGAKRVFSDAINDSNKWVFSPGS 95

Query: 58  TKESGGI--------DVIEKTKGKSASATGA--------TDLSKPPAKSQVVGWPPVRSF 101
           T  +G +         V++   GKS + T          +  + P +K+QVVGWPP+RSF
Sbjct: 96  TTATGDVGSGSGPRTSVVK--DGKSTTFTKPAVPVKEKKSSATAPASKAQVVGWPPIRSF 153

Query: 102 RKNIMAVQKDNEEGDN------KASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELS 155
           RKN MA  +  + G+N      +A S       +VKVSM+GAPYLRK+DLK YKSY ELS
Sbjct: 154 RKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELS 213

Query: 156 DALGKMFSSFTIGNCGSQG--MKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
            AL KMFS FTIG  GS G   +D +NES+L DLL GS+YV TYEDKD DWMLVGDVPWE
Sbjct: 214 SALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWE 273

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38827|IAA9_ARATH Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1

 Score =  177 bits (449), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/250 (44%), Positives = 145/250 (58%), Gaps = 44/250 (17%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEK-------------------AKNNNINGMK 42
           I+ +ATEL LGLPG    + +         K                   ++ NN +G K
Sbjct: 61  ISLKATELTLGLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNK 120

Query: 43  RGFADTV---------VDLKLNLSTKESGGIDVIEK-------TKGKSASATGATDLSKP 86
           RGF+DT+         V  + N    E+     + K        KG+S++   ++     
Sbjct: 121 RGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKGQSSTTNNSSSPPA- 179

Query: 87  PAKSQVVGWPPVRSFRKNIMAVQ-KDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDL 145
            AK+Q+VGWPPVRS+RKN +A   K+++E D +  S +     FVKVSMDGAPYLRKVDL
Sbjct: 180 -AKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGSGA----LFVKVSMDGAPYLRKVDL 234

Query: 146 KLYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGD 203
           + Y +Y ELS AL KMF++FT+G CGS G   KD ++E+KL DLLNG DYV TYEDKDGD
Sbjct: 235 RSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGD 294

Query: 204 WMLVGDVPWE 213
           WMLVGDVPWE
Sbjct: 295 WMLVGDVPWE 304

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75GK0|IAA11_ORYSJ Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1

 Score =  169 bits (429), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 102/236 (43%), Positives = 125/236 (52%), Gaps = 60/236 (25%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           + F+ TELRLGLPG    ++   G                KRGFA+T+ DLKL L     
Sbjct: 4   LGFDETELRLGLPGAGELAARSSG----------------KRGFAETI-DLKLKLQPAAP 46

Query: 62  GGID-----------------------VIEKTKGKSASATGATDLSKPPA-KSQVVGWPP 97
             +                         ++++  +S+  T   D  KP A K+QVVGWPP
Sbjct: 47  AAVSGEEGAQEDKEDADAAAAAADEKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPP 106

Query: 98  VRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDA 157
           VRSFRKN++A                    A VKVSMDGAPYLRK+D+ +YKSY ELS A
Sbjct: 107 VRSFRKNVLA--------------EKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMA 152

Query: 158 LGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
              MF+SFTIG CGS   +     +KL D L   +YVPTYEDKDGDWMLVGDVPWE
Sbjct: 153 FQNMFTSFTIGKCGSH--QQLKESNKLRDDL---EYVPTYEDKDGDWMLVGDVPWE 203

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
224123424	246	predicted protein [Populus trichocarpa]	0.938	0.813	0.747	1e-78
255580939	257	Auxin-responsive protein IAA16, putative	0.938	0.778	0.688	1e-74
224131258	250	predicted protein [Populus trichocarpa]	0.938	0.8	0.693	3e-74
20385508	249	auxin-regulated protein [Populus tremula	0.929	0.795	0.685	9e-74
110826446	258	auxin-regulated protein [Populus tomento	0.948	0.782	0.677	7e-72
332167939	246	auxin-responsive protein [Gossypium hirs	0.901	0.780	0.690	1e-71
224066307	237	predicted protein [Populus trichocarpa]	0.910	0.818	0.661	2e-69
312282545	234	unnamed protein product [Thellungiella h	0.892	0.811	0.648	5e-69
157849760	231	indoleacetic acid-induced protein 16 [Br	0.882	0.813	0.662	1e-67
113700411	251	AUX/IAA16 B [Malus x domestica]	0.938	0.796	0.669	1e-67

>gi|224123424|ref|XP_002319075.1| predicted protein [Populus trichocarpa] gi|222857451|gb|EEE94998.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/214 (74%), Positives = 175/214 (81%), Gaps = 14/214 (6%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFE TELRLGLPGG G        G  GE AK+N     KRGF++TV DLKLNLSTKE
Sbjct: 14  MINFEETELRLGLPGGIGN-------GNDGEVAKSNG----KRGFSETV-DLKLNLSTKE 61

Query: 61  SG-GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKA 119
           SG G D  +  K K+ +   +TD +KPPAK+QVVGWPP+RSFRKN+MAVQK++ +   K 
Sbjct: 62  SGKGGDEEKVMKEKTVAPPASTDPAKPPAKAQVVGWPPIRSFRKNVMAVQKNSNDNGEK- 120

Query: 120 SSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFM 179
           S SS + VAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFM
Sbjct: 121 SGSSGTGVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFM 180

Query: 180 NESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
           NESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE
Sbjct: 181 NESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580939|ref|XP_002531288.1| Auxin-responsive protein IAA16, putative [Ricinus communis] gi|223529121|gb|EEF31101.1| Auxin-responsive protein IAA16, putative [Ricinus communis]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 155/225 (68%), Positives = 177/225 (78%), Gaps = 25/225 (11%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFE TELRLGLPGG+  +          E AK   +NG KRGF++TV DLKLNLSTKE
Sbjct: 14  MINFEETELRLGLPGGSNVND--------SEFAK---VNG-KRGFSETV-DLKLNLSTKE 60

Query: 61  SGGIDVI---EKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDN-EEGD 116
             G DVI   E  K K+   + + D +KPPAK+QVVGWPP+RSFRKN+MAVQK++ +EG+
Sbjct: 61  PSGKDVIVGEETMKEKATVPSSSNDPAKPPAKAQVVGWPPIRSFRKNVMAVQKNSTDEGE 120

Query: 117 NKASSSSS--------SNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
              ++S+         ++ AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG
Sbjct: 121 KGTATSAPAAAATSGSTSAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 180

Query: 169 NCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
           NCGSQGMKDFMNESKLIDLLNGS+YVPTYEDKDGDWMLVGDVPWE
Sbjct: 181 NCGSQGMKDFMNESKLIDLLNGSEYVPTYEDKDGDWMLVGDVPWE 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131258|ref|XP_002328494.1| predicted protein [Populus trichocarpa] gi|118484744|gb|ABK94241.1| unknown [Populus trichocarpa] gi|222838209|gb|EEE76574.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 149/215 (69%), Positives = 168/215 (78%), Gaps = 15/215 (6%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MIN+E TELRLGLPGG          G  GE AK N     KRGF++TV DLKLNLSTKE
Sbjct: 15  MINYEETELRLGLPGG-------ASNGNDGEAAKGNG----KRGFSETV-DLKLNLSTKE 62

Query: 61  SG--GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKD-NEEGDN 117
           +G  G D  +    +   A    D +KPP+K+QVVGWPP+RSFRKN+MAVQK+ N+EG+ 
Sbjct: 63  TGKDGSDQEKVVMKEKTVAPRPNDPAKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDEGEK 122

Query: 118 KASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKD 177
            +SS ++   AFVKVSMDGAPYLRKVDLKLYKSY+ELSDALGKMFSSFTIGNCGSQG KD
Sbjct: 123 ASSSGTTGTAAFVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIGNCGSQGTKD 182

Query: 178 FMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 212
           FMNESKLIDLLN S+YVPTYEDKDGDWMLVGDVPW
Sbjct: 183 FMNESKLIDLLNSSEYVPTYEDKDGDWMLVGDVPW 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20385508|gb|AAM21317.1|AF373100_1 auxin-regulated protein [Populus tremula x Populus tremuloides]

 Score =  281 bits (720), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 148/216 (68%), Positives = 166/216 (76%), Gaps = 18/216 (8%)

Query: 1   MINFEATELRLGLPGG--NGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLST 58
           M+NFE TELRLGLPGG  NG  SE     G             KRGF++TV DLKLNLST
Sbjct: 15  MMNFEETELRLGLPGGVSNGNDSEAAKSNG-------------KRGFSETV-DLKLNLST 60

Query: 59  KESG--GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGD 116
           KE+G  G D  +    +   A    D +KPP+K+QVVGWPP+RSFRKN+MAVQK++ +  
Sbjct: 61  KETGKDGSDQEKVVMKEKTVAPRPNDPAKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDEG 120

Query: 117 NKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMK 176
            KASSS ++  AFVKVSMDGAPYLRKVDLKLYKSY+ELSDALGKMFSSFTIGNCGSQG K
Sbjct: 121 EKASSSGATGAAFVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIGNCGSQGTK 180

Query: 177 DFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 212
           DFMNESKLIDLLN S+YVPTYEDKDGDWMLVGDVPW
Sbjct: 181 DFMNESKLIDLLNSSEYVPTYEDKDGDWMLVGDVPW 216

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110826446|gb|ABH01143.1| auxin-regulated protein [Populus tomentosa]

 Score =  275 bits (704), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 145/214 (67%), Positives = 167/214 (78%), Gaps = 12/214 (5%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           M+NFE TELRLGLPGG          G   E AK+N   G +  F++TV DLKLNLSTK+
Sbjct: 15  MMNFEETELRLGLPGGVSN-------GNDPEAAKSNGKRGQR--FSETV-DLKLNLSTKD 64

Query: 61  SG--GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNK 118
           +G  G D  +    + A A    D +KPP+K+QVVGWPP+RSFRKN+MAVQK++ +   K
Sbjct: 65  TGKDGSDQEKAAMKEKAVAPRPNDPAKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDEGEK 124

Query: 119 ASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDF 178
           ASSS ++  AFVKVSMDGAPYLRKVDLKLYKSY+ELSDALGKMFSSFTIGNCGSQG K+F
Sbjct: 125 ASSSGATGAAFVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIGNCGSQGTKEF 184

Query: 179 MNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 212
           MNESKLIDLLN S+YVPTYEDKDGDWMLVGDVPW
Sbjct: 185 MNESKLIDLLNSSEYVPTYEDKDGDWMLVGDVPW 218

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332167939|gb|AEE25654.1| auxin-responsive protein [Gossypium hirsutum]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 152/220 (69%), Positives = 169/220 (76%), Gaps = 28/220 (12%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           INFE TELRLGLPG NG           GE  KNN     KRGF++TV +LKLNLS+KE+
Sbjct: 15  INFEETELRLGLPGANGND---------GETTKNNG----KRGFSETV-NLKLNLSSKET 60

Query: 62  GGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQK--DNEEGDNKA 119
              D  +K K KS+     TD +KPPAK+QVVGWPPVRSFRKNIMAVQK    EEG +K 
Sbjct: 61  VAEDS-DKMKEKSS-----TDPAKPPAKAQVVGWPPVRSFRKNIMAVQKASSEEEGGSKK 114

Query: 120 SSSSSSNVA------FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQ 173
           + +S++ +       FVKVSMDGAPYLRKVDLKLYKSYQ+LSDAL KMFSSFTIGNCGS 
Sbjct: 115 AGNSAAAITTTTAAAFVKVSMDGAPYLRKVDLKLYKSYQQLSDALSKMFSSFTIGNCGSH 174

Query: 174 GMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
           GMKDFMNESKLIDLLNGS+YVPTYEDKDGDWMLVGDVPWE
Sbjct: 175 GMKDFMNESKLIDLLNGSEYVPTYEDKDGDWMLVGDVPWE 214

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066307|ref|XP_002302075.1| predicted protein [Populus trichocarpa] gi|222843801|gb|EEE81348.1| predicted protein [Populus trichocarpa] gi|429326564|gb|AFZ78622.1| hypothetical protein [Populus tomentosa]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/213 (66%), Positives = 159/213 (74%), Gaps = 19/213 (8%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           + FE TELRLGLPG         GGG  GE  +       KRGF++TV DLKL LS+KES
Sbjct: 9   MGFEETELRLGLPGN--------GGGAEGEMVR-------KRGFSETV-DLKLKLSSKES 52

Query: 62  GGIDVIEKTKG-KSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAS 120
           G     EKT   +      ATD +KPPAK+QVVGWPPVRSFRKN++AVQK +   D +  
Sbjct: 53  GADPNHEKTSSLQREKNLLATDPAKPPAKAQVVGWPPVRSFRKNMLAVQKSST--DQECE 110

Query: 121 SSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMN 180
                N  FVKVSMDGAPYLRKVDLK+YK+YQELSDALGKMFSSFTIGNCGS G+KDF+N
Sbjct: 111 KVPGGNATFVKVSMDGAPYLRKVDLKMYKTYQELSDALGKMFSSFTIGNCGSHGLKDFLN 170

Query: 181 ESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
           ESKLIDLLNG+DYVPTYEDKDGDWMLVGDVPW+
Sbjct: 171 ESKLIDLLNGTDYVPTYEDKDGDWMLVGDVPWD 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282545|dbj|BAJ34138.1| unnamed protein product [Thellungiella halophila]

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 146/225 (64%), Positives = 165/225 (73%), Gaps = 35/225 (15%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFEATELRLGLPGGN G         G   AKNN     KRGF++TV DLKLNLS+  
Sbjct: 1   MINFEATELRLGLPGGNHG---------GDIAAKNNG----KRGFSETV-DLKLNLSSTA 46

Query: 61  SGGIDV--IEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEE---- 114
              +    I+  KGK         + KPPAK+QVVGWPPVRSFRKN+M+ QK   E    
Sbjct: 47  LDSVSEVDIQNLKGK---------VVKPPAKTQVVGWPPVRSFRKNVMSGQKQTTEVAAE 97

Query: 115 ------GDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
                 G + A+SS+++ VA+VKVSMDGAPYLRK+DLKLYK+YQ+LSDAL KMFSSFTIG
Sbjct: 98  GTEKTCGSSGATSSANAAVAYVKVSMDGAPYLRKIDLKLYKTYQDLSDALSKMFSSFTIG 157

Query: 169 NCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
           N G QGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW+
Sbjct: 158 NYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWK 202

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157849760|gb|ABV89663.1| indoleacetic acid-induced protein 16 [Brassica rapa]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 147/222 (66%), Positives = 164/222 (73%), Gaps = 34/222 (15%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTK- 59
           MINFEATELRLGLPGGN G          G+ A  NN    KRGF++TV DLKLNLS+  
Sbjct: 1   MINFEATELRLGLPGGNHG----------GDMAMKNN---GKRGFSETV-DLKLNLSSTA 46

Query: 60  --ESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQK----DNE 113
                G+D +E  K K         + KPPAK+QVVGWPPVRSFRKN+M+ QK    D  
Sbjct: 47  LDSVSGVD-LENMKEK---------VVKPPAKAQVVGWPPVRSFRKNVMSGQKPTAGDAT 96

Query: 114 EGDNKASSS---SSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNC 170
           EG  K SSS   +SS  A+VKVSMDGAPYLRK+DLKLYK+YQ+LSDAL KMFSSFT+GN 
Sbjct: 97  EGTEKTSSSNGATSSAAAYVKVSMDGAPYLRKIDLKLYKTYQDLSDALSKMFSSFTLGNY 156

Query: 171 GSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 212
           G QGMKDFMNES+LIDLLNGSDYVPTYEDKDGDWMLVGDVPW
Sbjct: 157 GPQGMKDFMNESRLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 198

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113700411|gb|ABI36494.1| AUX/IAA16 B [Malus x domestica]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 146/218 (66%), Positives = 166/218 (76%), Gaps = 18/218 (8%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           +INFE TELRLGLPGG   ++     G  GE +KN      KRGFA+TV DLKLN+S+++
Sbjct: 15  LINFEETELRLGLPGGILSTA-----GKDGEASKNTG----KRGFAETV-DLKLNISSED 64

Query: 61  SGGID---VIEKTKGKS-ASATGATDLSKP-PAKSQVVGWPPVRSFRKNIMAVQKDNEEG 115
               D   V++  K K  A    + D +KP  AK+QVVGWPPVRSFR NI+AVQKD  + 
Sbjct: 65  QSAGDEDQVVDMKKEKDVAPVPRSNDPTKPHAAKAQVVGWPPVRSFRXNILAVQKDVSDE 124

Query: 116 DNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM 175
             K +S S+   AFVKVSMDGAPYLRKVDLKLYKSYQELS ALGKMFSSFTIG+ GSQGM
Sbjct: 125 GEKTNSXSA---AFVKVSMDGAPYLRKVDLKLYKSYQELSTALGKMFSSFTIGSYGSQGM 181

Query: 176 KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
           KDFMNESKLIDLLNGS+YVPTYEDKDGDWMLVGDVPWE
Sbjct: 182 KDFMNESKLIDLLNGSEYVPTYEDKDGDWMLVGDVPWE 219

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
TAIR|locus:2129900	228	IAA14 "indole-3-acetic acid in	0.779	0.728	0.660	8.6e-56
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.769	0.694	0.657	2.9e-55
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.938	0.823	0.547	3.4e-54
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.746	0.694	0.601	5.4e-47
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.788	0.497	0.518	1.4e-44
UNIPROTKB|Q5Z749	266	IAA21 "Auxin-responsive protei	0.948	0.759	0.454	1.4e-39
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.643	0.449	0.589	6.1e-39
UNIPROTKB|Q75GK0	233	IAA11 "Auxin-responsive protei	0.596	0.545	0.570	9.5e-34
UNIPROTKB|Q6AT33	281	IAA19 "Auxin-responsive protei	0.779	0.590	0.452	6.7e-33
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.877	0.727	0.421	3.7e-32

TAIR|locus:2129900 IAA14 "indole-3-acetic acid inducible 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 113/171 (66%), Positives = 134/171 (78%)

Query:    42 KRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSF 101
             KRGF++TV DLKLNL + + G +D+   T G     T   D SKPPAK+QVVGWPPVR++
Sbjct:    30 KRGFSETV-DLKLNLQSNKQGHVDL--NTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNY 86

Query:   102 RKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKM 161
             RKN+MA QK  E    +A       VAFVKVSMDGAPYLRKVDLK+Y SY++LSDAL KM
Sbjct:    87 RKNVMANQKSGEA--EEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKM 144

Query:   162 FSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 212
             FSSFT+G+ G+QGM DFMNESK++DLLN S+YVP+YEDKDGDWMLVGDVPW
Sbjct:   145 FSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPW 195

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 121/184 (65%), Positives = 139/184 (75%)

Query:    42 KRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSF 101
             KRGF++TV DLKLNLS   S  +D + K   ++        + KPPAK+QVVGWPPVRSF
Sbjct:    29 KRGFSETV-DLKLNLS---STAMDSVSKVDLENMKEK----VVKPPAKAQVVGWPPVRSF 80

Query:   102 RKNIMAVQK----DNEEGDNK--------AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYK 149
             RKN+M+ QK    D  EG++K        +       VA+VKVSMDGAPYLRK+DLKLYK
Sbjct:    81 RKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYK 140

Query:   150 SYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD 209
             +YQ+LS+AL KMFSSFTIGN G QGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD
Sbjct:   141 TYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD 200

Query:   210 VPWE 213
             VPWE
Sbjct:   201 VPWE 204

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 120/219 (54%), Positives = 145/219 (66%)

Query:     1 MINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKE 60
             ++N +ATEL LGLP                           KRGF++TV DL LNL + +
Sbjct:     5 LMNLKATELCLGLPGGAEAVESPAKSAVGS-----------KRGFSETV-DLMLNLQSNK 52

Query:    61 SGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDN---EEGDN 117
              G +D ++         T   D SKPPAK+QVVGWPPVR++RKN+M  QK +   EE  +
Sbjct:    53 EGSVD-LKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASS 111

Query:   118 KAXXXXXXNVA---FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQG 174
             +         A    VKVSMDGAPYLRKVDLK+YKSYQ+LSDAL KMFSSFT+GN G+QG
Sbjct:   112 EKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQG 171

Query:   175 MKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
             M DFMNESKL++LLN S+YVP+YEDKDGDWMLVGDVPWE
Sbjct:   172 MIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWE 210

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 107/178 (60%), Positives = 130/178 (73%)

Query:    42 KRGFADTVVDLKLNLSTK---ESGGI--DVIE-KTKGKSASATGATDLSKPPAKSQVVGW 95
             KRGF++TV DLKLNL+ +   + G    DV+   +K KSA      D +KPPAK+QVVGW
Sbjct:    31 KRGFSETV-DLKLNLNNEPANKEGSTTHDVVTFDSKEKSACPK---DPAKPPAKAQVVGW 86

Query:    96 PPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELS 155
             PPVRS+RKN+M   + +  G   A        AFVKVSMDGAPYLRK+DL++YKSY ELS
Sbjct:    87 PPVRSYRKNVMVSCQKSSGGPEAA--------AFVKVSMDGAPYLRKIDLRMYKSYDELS 138

Query:   156 DALGKMFSSFTIG-NCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 212
             +AL  MFSSFT+G + G +GM DFMNE KL+DL+N  DYVP+YEDKDGDWMLVGDVPW
Sbjct:   139 NALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPW 196

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 98/189 (51%), Positives = 123/189 (65%)

Query:    42 KRGFADTV---VDLKLNLSTK------ESGGIDVIEKTK-----GKSASATGATDLSKPP 87
             KRGF+DT+    + K ++ T+      E+     + K        K  S+T     S P 
Sbjct:   120 KRGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKGQSSTTNNSSSPPA 179

Query:    88 AKSQVVGWPPVRSFRKNIMAVQ-KDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLK 146
             AK+Q+VGWPPVRS+RKN +A   K+++E D +          FVKVSMDGAPYLRKVDL+
Sbjct:   180 AKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGS----GALFVKVSMDGAPYLRKVDLR 235

Query:   147 LYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDW 204
              Y +Y ELS AL KMF++FT+G CGS G   KD ++E+KL DLLNG DYV TYEDKDGDW
Sbjct:   236 SYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDW 295

Query:   205 MLVGDVPWE 213
             MLVGDVPWE
Sbjct:   296 MLVGDVPWE 304

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

UNIPROTKB|Q5Z749 IAA21 "Auxin-responsive protein IAA21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 99/218 (45%), Positives = 125/218 (57%)

Query:     6 ATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXX----MKRGFADTVVDLKLNLSTKES 61
             ATELRLGLP                               KRGFAD +V        + +
Sbjct:    21 ATELRLGLPGTAEEAESEGGGGGGTDAAPLTLELLPKGGAKRGFADAIVGGPAGQRREAA 80

Query:    62 GGIDVIEKTKGKSASATGATDLSK---PPAKSQVVGWPPVRSFRKNIMAVQKDNEEG--D 116
             GG     K    +A A    +  K   P AK+QVVGWPP+RS+RKN MA+ +   +G  D
Sbjct:    81 GG-----KAAAAAAEAEEEEEKKKAQAPAAKAQVVGWPPIRSYRKNTMAMSQPALKGKDD 135

Query:   117 NKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM- 175
              +A         +VKVSMDGAPYLRKVDLK+YK+Y+ELS AL KMFS FT+G+  S G  
Sbjct:   136 GEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKS 195

Query:   176 -KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 212
              +D +++ +L+DL NG++ V TYEDKD DWMLVGDVPW
Sbjct:   196 GRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPW 233

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 89/151 (58%), Positives = 104/151 (68%)

Query:    71 KGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDN------KAXXXXX 124
             K K +SAT       P +K+QVVGWPP+RSFRKN MA  +  + G+N      +A     
Sbjct:   129 KEKKSSATA------PASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPE 182

Query:   125 XNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNES 182
                 +VKVSM+GAPYLRK+DLK YKSY ELS AL KMFS FTIG  GS G   +D +NES
Sbjct:   183 QPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNES 242

Query:   183 KLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
             +L DLL GS+YV TYEDKD DWMLVGDVPWE
Sbjct:   243 RLTDLLRGSEYVVTYEDKDSDWMLVGDVPWE 273

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

UNIPROTKB|Q75GK0 IAA11 "Auxin-responsive protein IAA11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 85/149 (57%), Positives = 103/149 (69%)

Query:    67 IEKTKGKSASATGATDLSKPPA-KSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXX 125
             ++++  +S+  T   D  KP A K+QVVGWPPVRSFRKN++A +K       KA      
Sbjct:    75 MKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRSFRKNVLA-EKC------KAA----- 122

Query:   126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGS-QGMKDFMNESKL 184
               A VKVSMDGAPYLRK+D+ +YKSY ELS A   MF+SFTIG CGS Q +K+    +KL
Sbjct:   123 --ALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQQLKE---SNKL 177

Query:   185 IDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
              D L   +YVPTYEDKDGDWMLVGDVPWE
Sbjct:   178 RDDL---EYVPTYEDKDGDWMLVGDVPWE 203

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q6AT33 IAA19 "Auxin-responsive protein IAA19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 81/179 (45%), Positives = 106/179 (59%)

Query:    42 KRGFADTVVDLKLNLSTKESG----GI-DVIEKTKGKSASATGATDLSKPPAKSQVVGWP 96
             KRGF D++   +   +   +G    G+ +  E+ KG   +A GA       AK+QVVGWP
Sbjct:    77 KRGFVDSLDRSEGRRAAATAGDDERGVREEEEEEKGLGEAAAGAPRA----AKAQVVGWP 132

Query:    97 PVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSD 156
             PVRS+RKN +A      +G+++          +VKVSMDGAPYLRKVDLK Y SY++LS 
Sbjct:   133 PVRSYRKNTLAASATKTKGEDQGKSEV--GCCYVKVSMDGAPYLRKVDLKTYSSYEDLSL 190

Query:   157 ALGKMFSSFTIGNCGSQ--GMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
             AL KMFS F  G   S     +D + +    D L   +YV TYEDKD DWMLVGD+PW+
Sbjct:   191 ALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDLPWD 249

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 94/223 (42%), Positives = 116/223 (52%)

Query:     3 NFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESG 62
             + + TELRLGLP                           KRGF+D    L  + +   + 
Sbjct:    27 DLKGTELRLGLPGSHSPDRSPPAATLDLLPAAKGA----KRGFSDEARPLPASAAAAAAA 82

Query:    63 GIDVIEKTKGKSASA----TGATDLSK--------PPAKSQVVGWPPVRSFRKNIMAVQK 110
             G       KGK A+A      A +  K        P AK+QVVGWPP+RS+RKN MA  +
Sbjct:    83 G-------KGKKAAAGEEDEDAEEEDKKVAAAPQAPAAKAQVVGWPPIRSYRKNTMATNQ 135

Query:   111 DNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNC 170
                  ++ A         +VKVSMDGAPYLRKVDLK YK+Y++LS AL KMF  FT G  
Sbjct:   136 LKSSKED-AEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTG-- 192

Query:   171 GSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
                  KD ++ES+        +YV TYEDKDGDWMLVGDVPWE
Sbjct:   193 -----KDGLSESR-----KDGEYVLTYEDKDGDWMLVGDVPWE 225

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0C132	IAA30_ORYSJ	No assigned EC number	0.5158	0.9436	0.7256	yes	no
O24407	IAA16_ARATH	No assigned EC number	0.6533	0.9014	0.8135	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0003037201 hypothetical protein (237 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	213
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	3e-77

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  229 bits (587), Expect = 3e-77
 Identities = 106/211 (50%), Positives = 126/211 (59%), Gaps = 48/211 (22%)

Query: 3   NFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESG 62
           N +ATELRLGLPGG+   SE             +++   KRGF++   D           
Sbjct: 2   NLKATELRLGLPGGSEPESEPST----------SSVTSNKRGFSEVTED----------- 40

Query: 63  GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSS 122
           GI         + S +   D +KPPAK+QVVGWPPVRS+RKN +  +K            
Sbjct: 41  GISSSLGEDKSTISVSSNGDSAKPPAKAQVVGWPPVRSYRKNSLREKK------------ 88

Query: 123 SSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNES 182
              + ++VKVSMDGAPYLRKVDLK+YKSY ELS AL KMFS FTIG            ES
Sbjct: 89  ---SGSYVKVSMDGAPYLRKVDLKMYKSYDELSSALEKMFSCFTIG------------ES 133

Query: 183 KLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 213
            L+DLLNGS+YVPTYEDKDGDWMLVGDVPWE
Sbjct: 134 GLLDLLNGSEYVPTYEDKDGDWMLVGDVPWE 164

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.34
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.29
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.18
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.99
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	96.88
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.5
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	96.33
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	96.23
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	95.75
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	95.7
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	95.22
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	95.14
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	91.98

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=5e-58  Score=392.89  Aligned_cols=188  Identities=53%  Similarity=0.907  Sum_probs=6.0

Q ss_pred             CCccccccccCCCCCCCCCCCCCCCCCCCCccccCccCCCCCCCchhhhhhhccCCcCCCCC-ccccccccCCcCCC-CC
Q 028141            2 INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESGG-IDVIEKTKGKSASA-TG   79 (213)
Q Consensus         2 lnl~~TELrLGLPG~~~~~~~~~~~~~~~~~~~~~~~~~~KR~fset~vdl~~~l~~~~~~~-~~~~~~~~~~~~~~-~~   79 (213)
                      ||||+|||||||||+.+  ++     ...........+++||+|+++ |+............ .............. ..
T Consensus         1 ln~~~TELrLGLPG~~~--~~-----~~~~~~~~~~~~~~kR~F~~a-id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (215)
T PF02309_consen    1 LNLKATELRLGLPGSES--PD-----ASSSSSSKKSSSGNKRGFSEA-IDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSS   72 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCC--CC-----cccccccccccCcccccchhh-hhhcccccccccccccccCccccccccccccc
Confidence            89999999999999874  11     000111112347889999998 77654111000000 00000000000000 00


Q ss_pred             C-CCCCCCCCCCCCCCCCCccchhhhhhhhcccCcccccccCCCCCCCcceEEEEecCccccceeecCCccCHHHHHHHH
Q 028141           80 A-TDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDAL  158 (213)
Q Consensus        80 ~-~~~~~p~~k~qvVGWPPVrs~Rkn~~~~~~~~~~~~~~~~~~~~~~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aL  158 (213)
                      . .....|.+++|+|||||||+||||++...+            ....++||||+|||+||||||||++|+||++|+.+|
T Consensus        73 ~~~~~~~p~~~~~~vgwpp~~s~r~n~~~~~~------------~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L  140 (215)
T PF02309_consen   73 DSSSSSPPASKAQVVGWPPVRSFRKNSLSEKQ------------SSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSAL  140 (215)
T ss_dssp             -------------BTTBS----S---------------------------------------------------------
T ss_pred             ccccCCCCcccccccCCCcccccccccccccc------------cccCCceeEEEecCcccceecCHHHhhCHHHHHHHH
Confidence            0 122235578999999999999999877211            122479999999999999999999999999999999


Q ss_pred             HHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeecccCCCC
Q 028141          159 GKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE  213 (213)
Q Consensus       159 e~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLVGDVPWe  213 (213)
                      ++||.+|.|++|++++    .++..+.++.++++|+|||||+||||||||||||+
T Consensus       141 ~~MF~~~~i~~~~~~~----~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~  191 (215)
T PF02309_consen  141 EKMFSCFSIEQCGSHG----LNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWE  191 (215)
T ss_dssp             -------------------------------------------------------
T ss_pred             HHhcCCCCcccccccc----ccchhhccccCCcceeEEEECCCCCEEEecCCCHH
Confidence            9999988888887744    45667778888899999999999999999999996

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.34  E-value=0.00069  Score=49.01  Aligned_cols=55  Identities=27%  Similarity=0.468  Sum_probs=45.6

Q ss_pred             eEEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeecc
Q 028141          129 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVG  208 (213)
Q Consensus       129 ~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLVG  208 (213)
                      -|||+..|. +=|.+.+..--+|.+|...+++.|...                        ...+.+.|.|.||||..+-
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~------------------------~~~~~l~Y~D~dgD~V~i~   57 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL------------------------DEDFQLKYKDEDGDLVTIS   57 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS------------------------TSSEEEEEEETTSSEEEES
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC------------------------CccEEEEeeCCCCCEEEeC
Confidence            489999997 434688888889999999999999861                        2468999999999998875

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.29  E-value=0.00087  Score=51.48  Aligned_cols=57  Identities=26%  Similarity=0.317  Sum_probs=45.3

Q ss_pred             eEEEEecCccccceeecC---CccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCee
Q 028141          129 FVKVSMDGAPYLRKVDLK---LYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWM  205 (213)
Q Consensus       129 ~VKV~MdG~pigRKVDL~---~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwM  205 (213)
                      -|||.-+|.-+=-++++.   .--+|++|.+.+.+.|...                       ...+|+|.|.|.||||.
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~-----------------------~~~~~~l~Y~Dedgd~V   58 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS-----------------------PDADLSLTYTDEDGDVV   58 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC-----------------------CCCcEEEEEECCCCCEE
Confidence            489999998555555553   4679999999999999851                       23589999999999998


Q ss_pred             ecc
Q 028141          206 LVG  208 (213)
Q Consensus       206 LVG  208 (213)
                      .+-
T Consensus        59 ~l~   61 (91)
T cd06398          59 TLV   61 (91)
T ss_pred             EEc
Confidence            763

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.18  E-value=0.0015  Score=49.21  Aligned_cols=54  Identities=24%  Similarity=0.348  Sum_probs=43.1

Q ss_pred             eEEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeec
Q 028141          129 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV  207 (213)
Q Consensus       129 ~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLV  207 (213)
                      =|||...|.  -+.+-|..--+|++|.+.+.++|..-                       +...|.|-|.|.||||.++
T Consensus         2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~-----------------------~~~~f~LkY~Ddegd~v~l   55 (82)
T cd06407           2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLD-----------------------DMSAFDLKYLDDDEEWVLL   55 (82)
T ss_pred             EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCC-----------------------CCCeeEEEEECCCCCeEEe
Confidence            389999887  44455555669999999999999851                       1257999999999999875

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.99  E-value=0.0023  Score=48.55  Aligned_cols=52  Identities=19%  Similarity=0.228  Sum_probs=45.6

Q ss_pred             EEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeec
Q 028141          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV  207 (213)
Q Consensus       130 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLV  207 (213)
                      |||.-.|.-+--+++-+..-+|++|.+.+.++|+.                        +  .|.|.|-|.||||.++
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l------------------------~--~f~lKYlDde~e~v~l   54 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL------------------------N--DIQIKYVDEENEEVSV   54 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC------------------------C--cceeEEEcCCCCEEEE
Confidence            79999999777788887788999999999999986                        1  4689999999999986

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>smart00666 PB1 PB1 domain

Probab=96.88  E-value=0.0046  Score=44.64  Aligned_cols=54  Identities=24%  Similarity=0.492  Sum_probs=43.3

Q ss_pred             EEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeeccc
Q 028141          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD  209 (213)
Q Consensus       130 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLVGD  209 (213)
                      |||.-.|.  -|.+-+..--+|.+|...+.+.|..                        ....+.|.|+|.||||..+.+
T Consensus         4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~------------------------~~~~~~l~Y~Dedgd~v~l~s   57 (81)
T smart00666        4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGL------------------------DNQSFTLKYQDEDGDLVSLTS   57 (81)
T ss_pred             EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCC------------------------CCCCeEEEEECCCCCEEEecC
Confidence            68877543  5777788888999999999999985                        123689999999999987643

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.50  E-value=0.013  Score=41.93  Aligned_cols=55  Identities=24%  Similarity=0.414  Sum_probs=42.7

Q ss_pred             eEEEEecCccccceeecC-CccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeec
Q 028141          129 FVKVSMDGAPYLRKVDLK-LYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV  207 (213)
Q Consensus       129 ~VKV~MdG~pigRKVDL~-~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLV  207 (213)
                      -|||+-.|.  -|.+=+. .--+|++|...|.+.|...                        ...+.+.|.|.||||..+
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~------------------------~~~~~l~y~D~e~d~v~l   55 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD------------------------AVSFKLKYPDEDGDLVTI   55 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC------------------------CCcEEEEeeCCCCCEEEe
Confidence            378888765  3444444 7889999999999999851                        136899999999999877


Q ss_pred             cc
Q 028141          208 GD  209 (213)
Q Consensus       208 GD  209 (213)
                      .+
T Consensus        56 ~s   57 (81)
T cd05992          56 SS   57 (81)
T ss_pred             CC
Confidence            54

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.33  E-value=0.0095  Score=45.26  Aligned_cols=53  Identities=19%  Similarity=0.276  Sum_probs=40.0

Q ss_pred             EEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeee
Q 028141          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWML  206 (213)
Q Consensus       130 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwML  206 (213)
                      ||...|..=-=-.+|.....+|+++.+-|+.||.+                        .+..|+|-|.|.+||.+=
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l------------------------~~~~f~i~Y~D~~gDLLP   55 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI------------------------PNVDFLIGYTDPHGDLLP   55 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC------------------------CCCcEEEEEeCCCCCEec
Confidence            56666665222245555669999999999999986                        234799999999999874

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=96.23  E-value=0.011  Score=45.36  Aligned_cols=50  Identities=22%  Similarity=0.344  Sum_probs=38.0

Q ss_pred             ccccceeecC--CccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeec
Q 028141          137 APYLRKVDLK--LYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV  207 (213)
Q Consensus       137 ~pigRKVDL~--~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLV  207 (213)
                      .|-||-+=++  ...|+.+|..++.+-|+.-.                     .....|.|.|.|.||||.|.
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~---------------------~~~~~~~L~YlDDEgD~Vll   58 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDD---------------------FETHLYALSYVDDEGDIVLI   58 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCcc---------------------ccCCcccEEEEcCCCCEEEE
Confidence            4667765544  47899999999999997511                     01247899999999999986

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=95.75  E-value=0.045  Score=42.03  Aligned_cols=56  Identities=23%  Similarity=0.485  Sum_probs=41.5

Q ss_pred             eEEEEecC---ccccceeec--CCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCC
Q 028141          129 FVKVSMDG---APYLRKVDL--KLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGD  203 (213)
Q Consensus       129 ~VKV~MdG---~pigRKVDL--~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGD  203 (213)
                      .||.+..|   .+==|++=|  ....+|++|...+.++|...                       .+..|++.|.|.|||
T Consensus         2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l-----------------------~~~~ftlky~DeeGD   58 (87)
T cd06402           2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSL-----------------------RGKNFQLFWKDEEGD   58 (87)
T ss_pred             eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHcccc-----------------------CCCcEEEEEECCCCC
Confidence            57777766   233344444  66679999999999999741                       235799999999999


Q ss_pred             eeec
Q 028141          204 WMLV  207 (213)
Q Consensus       204 wMLV  207 (213)
                      ..-+
T Consensus        59 lvtI   62 (87)
T cd06402          59 LVAF   62 (87)
T ss_pred             EEee
Confidence            8654

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.70  E-value=0.03  Score=42.83  Aligned_cols=53  Identities=23%  Similarity=0.357  Sum_probs=42.0

Q ss_pred             EEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeec
Q 028141          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV  207 (213)
Q Consensus       130 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLV  207 (213)
                      ||++-.|.-.--.+|.  .-+|++|.+.+.+||...                       .+..|++.|.|.|||---+
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~-----------------------~~q~ft~kw~DEEGDp~ti   55 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFH-----------------------NDQPFTLKWIDEEGDPCTI   55 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCC-----------------------CCCcEEEEEECCCCCceee
Confidence            7889999855555565  778999999999999851                       2347999999999996543

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=95.22  E-value=0.066  Score=40.90  Aligned_cols=52  Identities=21%  Similarity=0.280  Sum_probs=42.7

Q ss_pred             EEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeec
Q 028141          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV  207 (213)
Q Consensus       130 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLV  207 (213)
                      -||+-.|.  .|++-...-=+|..|.+.|+.+|.+.                        .-.+.+||.|.|||..-+
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp------------------------~~~~~vtYiDeD~D~ITl   54 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLP------------------------EIKVGVTYIDNDNDEITL   54 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCC------------------------hhHeEEEEEcCCCCEEEe
Confidence            47888886  78888888899999999999999862                        112789999999998654

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=95.14  E-value=0.1  Score=39.81  Aligned_cols=57  Identities=25%  Similarity=0.469  Sum_probs=40.3

Q ss_pred             EEEEecCccccceeecCCcc-CHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeecc
Q 028141          130 VKVSMDGAPYLRKVDLKLYK-SYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVG  208 (213)
Q Consensus       130 VKV~MdG~pigRKVDL~~~~-sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLVG  208 (213)
                      +|+...|. | |++=+..-. +|.+|...+.+.|..-    .+                 ....+.+.|.|.|||+.-|-
T Consensus         3 iK~~~g~D-i-R~~~~~~~~~t~~~L~~~v~~~F~~~----~~-----------------~~~~flIKYkD~dGDlVTIt   59 (81)
T cd06401           3 LKAQLGDD-I-RRIPIHNEDITYDELLLMMQRVFRGK----LG-----------------SSDDVLIKYKDEDGDLITIF   59 (81)
T ss_pred             EEEEeCCe-E-EEEeccCccccHHHHHHHHHHHhccc----cC-----------------CcccEEEEEECCCCCEEEec
Confidence            67766655 4 444444323 9999999999999851    11                 23478999999999997664


Q ss_pred             c
Q 028141          209 D  209 (213)
Q Consensus       209 D  209 (213)
                      +
T Consensus        60 s   60 (81)
T cd06401          60 D   60 (81)
T ss_pred             c
Confidence            3

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=91.98  E-value=0.58  Score=35.94  Aligned_cols=54  Identities=20%  Similarity=0.302  Sum_probs=44.0

Q ss_pred             ceEEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeec
Q 028141          128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV  207 (213)
Q Consensus       128 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLV  207 (213)
                      .=|||+-.|.  .|-|-+..--+|++|...+.++|+.                         ...+.+-|.|. ||..-+
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~-------------------------~~~~~iKykDE-GD~iti   54 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF-------------------------KRRLKIKMKDD-GDMITM   54 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC-------------------------CCceEEEEEcC-CCCccc
Confidence            4589998888  5667777777899999999999985                         12678999999 998777


Q ss_pred             cc
Q 028141          208 GD  209 (213)
Q Consensus       208 GD  209 (213)
                      +|
T Consensus        55 ~s   56 (86)
T cd06408          55 GD   56 (86)
T ss_pred             cC
Confidence            65

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	213
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.39
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.37
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.57
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	94.56
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	88.76
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	81.11
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	80.41

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.39  E-value=0.0098  Score=44.63  Aligned_cols=57  Identities=21%  Similarity=0.195  Sum_probs=44.3

Q ss_pred             CcceEEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCee
Q 028141          126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWM  205 (213)
Q Consensus       126 ~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwM  205 (213)
                      +.+=|||+-.|.-+  .+.+...-+|++|...|.++|...                       .+..+++.|.|.|||+.
T Consensus         5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~-----------------------~~~~f~lky~DEeGD~i   59 (89)
T 1vd2_A            5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFD-----------------------NEQLFTMKWIDEEGDPC   59 (89)
T ss_dssp             SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCC-----------------------SSCCEEEEECCSSSCCE
T ss_pred             CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCC-----------------------CCCeEEEEEECCCCCcc
Confidence            45788999999844  444455679999999999999851                       23478999999999986


Q ss_pred             ec
Q 028141          206 LV  207 (213)
Q Consensus       206 LV  207 (213)
                      -+
T Consensus        60 ti   61 (89)
T 1vd2_A           60 TV   61 (89)
T ss_dssp             EC
T ss_pred             cc
Confidence            43

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.37  E-value=0.0082  Score=45.00  Aligned_cols=58  Identities=22%  Similarity=0.258  Sum_probs=45.6

Q ss_pred             CcceEEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCee
Q 028141          126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWM  205 (213)
Q Consensus       126 ~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwM  205 (213)
                      +..-||..-|..--=-.||-....+|++|..-|+++|.+                        ....|++.|.|.|||++
T Consensus         5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L------------------------~~~~f~i~Y~D~dGDLl   60 (86)
T 1wmh_B            5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLL   60 (86)
T ss_dssp             CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEE
T ss_pred             CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC------------------------CCCCEEEEEECCCCCEe
Confidence            456789888888433356656778999999999999984                        23468999999999997


Q ss_pred             ec
Q 028141          206 LV  207 (213)
Q Consensus       206 LV  207 (213)
                      =+
T Consensus        61 pI   62 (86)
T 1wmh_B           61 PL   62 (86)
T ss_dssp             EC
T ss_pred             ee
Confidence            43

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.57  E-value=0.023  Score=43.60  Aligned_cols=59  Identities=15%  Similarity=0.272  Sum_probs=43.3

Q ss_pred             CcceEEEEecCc----cccceeecCC-----------ccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCC
Q 028141          126 NVAFVKVSMDGA----PYLRKVDLKL-----------YKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNG  190 (213)
Q Consensus       126 ~~~~VKV~MdG~----pigRKVDL~~-----------~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~  190 (213)
                      .++-||++..|.    .==|++-|..           -.+|++|...++++|...                       .+
T Consensus         4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l-----------------------~~   60 (102)
T 2kkc_A            4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL-----------------------RP   60 (102)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-----------------------CS
T ss_pred             ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc-----------------------CC
Confidence            357789998762    2345555532           248999999999999751                       24


Q ss_pred             CCeeEEEeeCCCCeeec
Q 028141          191 SDYVPTYEDKDGDWMLV  207 (213)
Q Consensus       191 seyvltYEDkdGDwMLV  207 (213)
                      ..|.+.|.|.|||+.-+
T Consensus        61 ~~f~l~Y~DedGDlIti   77 (102)
T 2kkc_A           61 GGFQAHYRAERGDLVAF   77 (102)
T ss_dssp             SCEEEEEECTTCCEEEE
T ss_pred             CcEEEEEECCCCCEEEe
Confidence            57999999999998754

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=94.56  E-value=0.069  Score=41.98  Aligned_cols=59  Identities=15%  Similarity=0.242  Sum_probs=43.0

Q ss_pred             CcceEEEEecCc----cccceeecC-----------CccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCC
Q 028141          126 NVAFVKVSMDGA----PYLRKVDLK-----------LYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNG  190 (213)
Q Consensus       126 ~~~~VKV~MdG~----pigRKVDL~-----------~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~  190 (213)
                      ..+-||++..|.    .==|++-|.           .-.+|++|...++++|...                       .+
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L-----------------------~~   75 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL-----------------------RP   75 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-----------------------CS
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc-----------------------CC
Confidence            467899999752    223555553           1359999999999999741                       24


Q ss_pred             CCeeEEEeeCCCCeeec
Q 028141          191 SDYVPTYEDKDGDWMLV  207 (213)
Q Consensus       191 seyvltYEDkdGDwMLV  207 (213)
                      ..|.+.|.|.|||+.-+
T Consensus        76 ~~f~l~YkDEdGDlItI   92 (117)
T 2ktr_A           76 GGFQAHYRAERGDLVAF   92 (117)
T ss_dssp             SCEEEEEECTTCCEEEE
T ss_pred             CcEEEEEECCCCCEEEe
Confidence            47999999999998644

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=88.76  E-value=1.3  Score=33.61  Aligned_cols=64  Identities=16%  Similarity=0.306  Sum_probs=45.5

Q ss_pred             cceEEEEecCcc----c--cceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeC
Q 028141          127 VAFVKVSMDGAP----Y--LRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDK  200 (213)
Q Consensus       127 ~~~VKV~MdG~p----i--gRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDk  200 (213)
                      ..-|||+-+..-    +  .|.|=+..--+|++|...+.+-|..++.     +            + . .....|-|.|.
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~-----~------------~-i-~~~~klkYkDE   65 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN-----N------------N-I-SPITKIKYQDE   65 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS-----S------------C-C-CCCCCEEEECS
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc-----c------------c-c-cceeEEEEEcC
Confidence            467888877421    2  3666677788999999999999986311     0            0 0 12457999999


Q ss_pred             CCCeeeccc
Q 028141          201 DGDWMLVGD  209 (213)
Q Consensus       201 dGDwMLVGD  209 (213)
                      |||+...++
T Consensus        66 dGD~Vtl~s   74 (98)
T 1q1o_A           66 DGDFVVLGS   74 (98)
T ss_dssp             SSCEEEECS
T ss_pred             CCCEEEEcC
Confidence            999988775

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=81.11  E-value=3.9  Score=30.54  Aligned_cols=54  Identities=9%  Similarity=0.099  Sum_probs=40.1

Q ss_pred             ceEEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeec
Q 028141          128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV  207 (213)
Q Consensus       128 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLV  207 (213)
                      .-+||.--|...=--|.-..--++++|...+..+|+.                          +.+++.|-|.|||-.-|
T Consensus         7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L--------------------------~~~~ikY~DEenD~v~i   60 (87)
T 2bkf_A            7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL--------------------------NTIQIKYLDEENEEVSI   60 (87)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC--------------------------SSEEEEEECTTSCEEEE
T ss_pred             EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC--------------------------CceEEEEEcCCCCEEEE
Confidence            4578899888544446444467899998888888874                          15789999999997543

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=80.41  E-value=2.3  Score=32.92  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=31.2

Q ss_pred             ecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeec
Q 028141          144 DLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV  207 (213)
Q Consensus       144 DL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLV  207 (213)
                      ||..--.|.+|+.-..+-|...                          +-+|-|.|.|||+.-+
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~~--------------------------DIaLNYrD~eGDLIri   65 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQRE--------------------------DIALNYRDAEGDLVRL   65 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCCS--------------------------SEEEEEECTTSCEEEC
T ss_pred             ccccCCCHHHHHHHHHHHhccc--------------------------ceeeeeecCCCCEEEE
Confidence            5777789999999999999742                          3478999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	213
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	97.0
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	96.1
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	91.14

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00065  Score=49.13  Aligned_cols=55  Identities=11%  Similarity=0.117  Sum_probs=46.7

Q ss_pred             ceEEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeec
Q 028141          128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV  207 (213)
Q Consensus       128 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLV  207 (213)
                      .=|||+..|..+=-+|-+....+|.+|...|.+.|..                        .  ++.|.|.|.|+||.++
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l------------------------~--~~~lkY~Ddd~e~v~l   58 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL------------------------N--TIQIKYLDEENEEVSI   58 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC------------------------S--SEEEEEECTTSCEEEE
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCc------------------------c--cceEEEEcCCCCEEEE
Confidence            4689999998766678777889999999999999985                        1  3679999999999987


Q ss_pred             c
Q 028141          208 G  208 (213)
Q Consensus       208 G  208 (213)
                      .
T Consensus        59 ~   59 (85)
T d2bkfa1          59 N   59 (85)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.006  Score=43.08  Aligned_cols=57  Identities=12%  Similarity=0.127  Sum_probs=44.3

Q ss_pred             CCCcceEEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCC
Q 028141          124 SSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGD  203 (213)
Q Consensus       124 ~~~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGD  203 (213)
                      +.+..-|||+..+.-+-=+|  ..--+|.+|...+.+.|..                        .  .++|-|.|.|||
T Consensus         9 ~~~~ikVKv~~~~D~~~~~l--~~~it~~dL~~kI~~rf~~------------------------~--~~~lkY~Dedgd   60 (85)
T d1ip9a_           9 GLKTTKIKFYYKDDIFALML--KGDTTYKELRSKIAPRIDT------------------------D--NFKLQTKLFDGS   60 (85)
T ss_dssp             CCCCEEEEECBTTCCEEEEE--CSCCCHHHHHHHHHHHHTS------------------------S--CEEEEECCSSSC
T ss_pred             CCCCEEEEEEECCcEEEEEe--CCCCCHHHHHHHHHHHhCC------------------------C--ceEEEEEcCCCC
Confidence            34567899999988544444  5557899999999999964                        1  378999999999


Q ss_pred             eeecc
Q 028141          204 WMLVG  208 (213)
Q Consensus       204 wMLVG  208 (213)
                      |..+-
T Consensus        61 ~v~i~   65 (85)
T d1ip9a_          61 GEEIK   65 (85)
T ss_dssp             CSCCC
T ss_pred             EEEEe
Confidence            97653

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.14  E-value=0.26  Score=34.84  Aligned_cols=53  Identities=25%  Similarity=0.270  Sum_probs=39.1

Q ss_pred             EEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeee
Q 028141          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWML  206 (213)
Q Consensus       130 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwML  206 (213)
                      ||=..|-.=-=-.+|.....+|++...-|++|-.+                        .+.++++.|.|.+||.+=
T Consensus         5 VKSKFdAEfRRFsl~r~~~~~fe~F~~Lle~~H~l------------------------~~~~f~i~Y~D~hgDLLP   57 (82)
T d1wmhb_           5 VKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLLP   57 (82)
T ss_dssp             EEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEEE
T ss_pred             eecccCceEEEeeeccccccCHHHHHHHHHHHcCC------------------------CCCcEEEEEecCCCCccc
Confidence            44444443222257777889999999999999875                        235789999999999874