Citrus Sinensis ID: 028146

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKVNSCINILIFYSVNFH
cccccccccccccccEEEEEcccccccHHHHHHHHHHHHcccccEEEEccccccccccccccccccEEEEEEcccccEEEEEcccHHHHHHHHHccccccccccEEEEcccccccccccEEEcHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccEEEEEcEEcccccc
cccccccccccccccEEEEEccccccHHHHHHHHHHHHHcccccEEEEccccccccccccccccccEEEEEEcccccEEEEEccccHHHHHHHHHHHHccccccEEEEEEEEccccHHHHHHcHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHccEEEEEEEEEEccc
merrgiaivnsdhkptimvtnddgidapgLRSLVRVLVSTNRytvqvcapdseksavshsitwrhpisarpadfdgvtayavsgtpadcaslgvsqalfpsvpdlvisginmgsncgyHVVYSGTVAGAREaffhgvpsvsisydwvggksnvndytLAAEACLPIINAILAEIrnqtypercflnidlptdipnnkvnscINILIFYSVNFH
merrgiaivnsdhkptimvtnddgidapgLRSLVRVLVSTNRYTVqvcapdseksavsHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKVNSCINILIFYSVNFH
MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKVNSCINILIFYSVNFH
***************TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKVNSCINILIFYSVN**
***************TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKVNSCINILIFY*****
MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA***********ITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKVNSCINILIFYSVNFH
*****IAI***DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEK*AVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKVNSCINILIFYSVNFH
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKVNSCINILIFYSVNFH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query213 2.2.26 [Sep-21-2011]
Q30QB8264 5'-nucleotidase SurE OS=S yes no 0.882 0.712 0.394 9e-30
Q30YV9259 5'-nucleotidase SurE OS=D yes no 0.798 0.656 0.419 1e-29
Q3ADI0264 5'-nucleotidase SurE OS=C yes no 0.784 0.632 0.431 2e-29
B8FC91253 5'-nucleotidase SurE OS=D yes no 0.798 0.671 0.409 1e-28
C0ZGV3265 5'-nucleotidase SurE OS=B yes no 0.793 0.637 0.413 5e-28
Q2RJD1260 5'-nucleotidase SurE OS=M yes no 0.765 0.626 0.420 6e-28
A1VY14258 5'-nucleotidase SurE OS=C yes no 0.779 0.643 0.389 1e-27
A8FK82258 5'-nucleotidase SurE OS=C yes no 0.830 0.686 0.372 1e-27
Q5HWH7258 5'-nucleotidase SurE OS=C yes no 0.830 0.686 0.372 1e-27
Q9PIK6258 5'-nucleotidase SurE OS=C yes no 0.830 0.686 0.372 1e-27
>sp|Q30QB8|SURE_SULDN 5'-nucleotidase SurE OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=surE PE=3 SV=1 Back     alignment and function desciption
 Score =  130 bits (326), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 111/203 (54%), Gaps = 15/203 (7%)

Query: 16  TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD 75
            I+VTNDDG +A GLR+LV+ L       V V AP SEKSA  HS+T       RP  F 
Sbjct: 4   KILVTNDDGYEAKGLRALVKALKELEDVEVMVVAPASEKSACGHSLTL-----VRPLRFV 58

Query: 76  GVTAYAVS---GTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREA 132
           GV         GTP+DC  L +S     S PDL+ISGIN GSN G  + YSGT AGA E 
Sbjct: 59  GVDDNFFKLDDGTPSDCVYLALSTIYVDSKPDLLISGINRGSNMGEDITYSGTAAGAMEG 118

Query: 133 FFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTY--PERCFLNIDLP 190
             H VPS++IS   +       D+TLA +    +I  ++ +I+N ++  P+R FLN+++P
Sbjct: 119 VLHDVPSIAIS-QVMDFSDPQGDFTLAQK----VIKELVIKIKNGSFPLPQREFLNVNIP 173

Query: 191 TDIPNNKVNSCINILIFYSVNFH 213
            D+ +        ++ +    F+
Sbjct: 174 PDLDSTDNRDAKMVVTYAGYRFY 196
Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates.
Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) (taxid: 326298)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 5
>sp|Q30YV9|SURE_DESDG 5'-nucleotidase SurE OS=Desulfovibrio desulfuricans (strain G20) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q3ADI0|SURE_CARHZ 5'-nucleotidase SurE OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|B8FC91|SURE_DESAA 5'-nucleotidase SurE OS=Desulfatibacillum alkenivorans (strain AK-01) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|C0ZGV3|SURE_BREBN 5'-nucleotidase SurE OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q2RJD1|SURE_MOOTA 5'-nucleotidase SurE OS=Moorella thermoacetica (strain ATCC 39073) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A1VY14|SURE_CAMJJ 5'-nucleotidase SurE OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A8FK82|SURE_CAMJ8 5'-nucleotidase SurE OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q5HWH7|SURE_CAMJR 5'-nucleotidase SurE OS=Campylobacter jejuni (strain RM1221) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q9PIK6|SURE_CAMJE 5'-nucleotidase SurE OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168) GN=surE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query213
255552207306 5'-nucleotidase surE, putative [Ricinus 0.882 0.614 0.797 4e-85
449504179307 PREDICTED: 5'-nucleotidase SurE-like [Cu 0.887 0.615 0.761 2e-84
449432702307 PREDICTED: 5'-nucleotidase SurE-like [Cu 0.887 0.615 0.761 3e-84
225432652308 PREDICTED: 5'-nucleotidase surE [Vitis v 0.892 0.616 0.752 8e-82
357444243306 5'-nucleotidase surE [Medicago truncatul 0.873 0.607 0.725 6e-81
224108041247 predicted protein [Populus trichocarpa] 0.873 0.753 0.715 2e-79
297804776 316 hypothetical protein ARALYDRAFT_493398 [ 0.924 0.623 0.708 3e-76
356497458303 PREDICTED: 5'-nucleotidase surE-like [Gl 0.863 0.607 0.701 2e-75
18414342 315 5'-nucleotidase [Arabidopsis thaliana] g 0.877 0.593 0.714 1e-74
356541721303 PREDICTED: 5'-nucleotidase surE-like [Gl 0.854 0.600 0.697 1e-74
>gi|255552207|ref|XP_002517148.1| 5'-nucleotidase surE, putative [Ricinus communis] gi|223543783|gb|EEF45311.1| 5'-nucleotidase surE, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  319 bits (818), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 150/188 (79%), Positives = 168/188 (89%)

Query: 10  NSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISA 69
           +SD KPTIM+TNDDGIDAPGLRSLVRVLV+TNR+ + VCAPDSEKSAVSHSIT+RHPISA
Sbjct: 4   SSDQKPTIMITNDDGIDAPGLRSLVRVLVATNRFRILVCAPDSEKSAVSHSITYRHPISA 63

Query: 70  RPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGA 129
           R  D +G  AYA+SGTPADCASLGVS ALFPSVPDLVISGINMGSNCGYH+VYSGTVAGA
Sbjct: 64  RRVDIEGTLAYAISGTPADCASLGVSTALFPSVPDLVISGINMGSNCGYHIVYSGTVAGA 123

Query: 130 REAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDL 189
           REAFF GVPS+SISYDWVGGKS + D+ L AEAC PII+AIL EI+N+TY   CFLNIDL
Sbjct: 124 REAFFFGVPSISISYDWVGGKSTIQDFALGAEACEPIISAILVEIKNRTYQSGCFLNIDL 183

Query: 190 PTDIPNNK 197
           PT++ N+K
Sbjct: 184 PTNVANHK 191

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449504179|ref|XP_004162274.1| PREDICTED: 5'-nucleotidase SurE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449432702|ref|XP_004134138.1| PREDICTED: 5'-nucleotidase SurE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225432652|ref|XP_002282293.1| PREDICTED: 5'-nucleotidase surE [Vitis vinifera] gi|297737043|emb|CBI26244.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357444243|ref|XP_003592399.1| 5'-nucleotidase surE [Medicago truncatula] gi|355481447|gb|AES62650.1| 5'-nucleotidase surE [Medicago truncatula] Back     alignment and taxonomy information
>gi|224108041|ref|XP_002314700.1| predicted protein [Populus trichocarpa] gi|222863740|gb|EEF00871.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297804776|ref|XP_002870272.1| hypothetical protein ARALYDRAFT_493398 [Arabidopsis lyrata subsp. lyrata] gi|297316108|gb|EFH46531.1| hypothetical protein ARALYDRAFT_493398 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356497458|ref|XP_003517577.1| PREDICTED: 5'-nucleotidase surE-like [Glycine max] Back     alignment and taxonomy information
>gi|18414342|ref|NP_567449.1| 5'-nucleotidase [Arabidopsis thaliana] gi|21593317|gb|AAM65266.1| unknown [Arabidopsis thaliana] gi|27311791|gb|AAO00861.1| expressed protein [Arabidopsis thaliana] gi|30984528|gb|AAP42727.1| At4g14930 [Arabidopsis thaliana] gi|332658124|gb|AEE83524.1| 5'-nucleotidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356541721|ref|XP_003539322.1| PREDICTED: 5'-nucleotidase surE-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query213
TAIR|locus:2129510 315 AT4G14930 "AT4G14930" [Arabido 0.877 0.593 0.714 3.7e-71
TAIR|locus:2032652 385 AT1G72880 "AT1G72880" [Arabido 0.873 0.483 0.508 1.5e-44
TIGR_CMR|CHY_0957264 CHY_0957 "acid phosphatase Sur 0.816 0.659 0.418 1.6e-29
TIGR_CMR|GSU_1523262 GSU_1523 "stationary-phase sur 0.769 0.625 0.398 1.7e-27
TIGR_CMR|CJE_0339258 CJE_0339 "acid phosphatase Sur 0.826 0.682 0.380 1.4e-25
TIGR_CMR|DET_0797265 DET_0797 "acid phosphatase Sur 0.812 0.652 0.372 1.3e-22
TIGR_CMR|SO_3435248 SO_3435 "stationary-phase surv 0.784 0.673 0.379 1.6e-22
UNIPROTKB|Q9KI21258 surE "5'-nucleotidase SurE" [C 0.779 0.643 0.359 2.1e-22
TIGR_CMR|CBU_1671258 CBU_1671 "stationary-phase sur 0.779 0.643 0.359 2.1e-22
UNIPROTKB|P0A840253 surE "broad specificity 5'(3') 0.769 0.648 0.385 3.4e-22
TAIR|locus:2129510 AT4G14930 "AT4G14930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 135/189 (71%), Positives = 158/189 (83%)

Query:    11 SDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISAR 70
             S  +P IMVTNDDGIDAPGLRSLVRVLVSTN Y V+VCAPDSEKSAVSHSI W  P++A+
Sbjct:    10 SGERPIIMVTNDDGIDAPGLRSLVRVLVSTNLYDVRVCAPDSEKSAVSHSIIWSRPLTAK 69

Query:    71 PADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAR 130
               + DG TAY+V GTPADC  LG+S+ALFPS PDLV+SGIN+GSNCGY++VYSGTVAGAR
Sbjct:    70 RVEIDGATAYSVDGTPADCTGLGLSEALFPSRPDLVLSGINVGSNCGYNIVYSGTVAGAR 129

Query:   131 EAFFHGVPSVSISYD--WVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNID 188
             EAF + VPS SISYD  W  G+ N ND+ L+A+ACLPIIN IL  I+N+T+P +CFLNID
Sbjct:   130 EAFLYDVPSASISYDFDWKRGEMNANDFALSAQACLPIINGILGAIKNKTHPMQCFLNID 189

Query:   189 LPTDIPNNK 197
             LPTDI N+K
Sbjct:   190 LPTDIANHK 198
GO:0003993 "acid phosphatase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0016787 "hydrolase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2032652 AT1G72880 "AT1G72880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0957 CHY_0957 "acid phosphatase SurE" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1523 GSU_1523 "stationary-phase survival protein SurE" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0339 CJE_0339 "acid phosphatase SurE" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0797 DET_0797 "acid phosphatase SurE" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3435 SO_3435 "stationary-phase survival protein SurE" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KI21 surE "5'-nucleotidase SurE" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1671 CBU_1671 "stationary-phase survival protein SurE" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|P0A840 surE "broad specificity 5'(3')-nucleotidase and polyphosphatase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3LOW CONFIDENCE prediction!
3rd Layer3.1.3.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019982001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (308 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00002094001
SubName- Full=Chromosome chr19 scaffold_126, whole genome shotgun sequence; (578 aa)
•    •  0.953
GSVIVG00015936001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (215 aa)
•     • 0.926
GSVIVG00025551001
RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa)
•    •  0.922
GSVIVG00007310001
SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (182 aa)
•    •• 0.920
GSVIVG00014948001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (182 aa)
•    •• 0.920
GSVIVG00000429001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (534 aa)
•    •  0.919
GSVIVG00020561001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (220 aa)
•    •  0.917
GSVIVG00016858001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (405 aa)
     •  0.916
GSVIVG00034853001
SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (250 aa)
•    •  0.916
GSVIVG00018292001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (253 aa)
•    •  0.915

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
pfam01975188 pfam01975, SurE, Survival protein SurE 4e-64
PRK00346250 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatas 3e-59
COG0496252 COG0496, SurE, Predicted acid phosphatase [General 2e-54
TIGR00087244 TIGR00087, surE, 5'/3'-nucleotidase SurE 1e-46
PRK13935253 PRK13935, PRK13935, stationary phase survival prot 5e-42
PRK13933253 PRK13933, PRK13933, stationary phase survival prot 2e-38
PRK13932257 PRK13932, PRK13932, stationary phase survival prot 8e-30
PRK13931261 PRK13931, PRK13931, stationary phase survival prot 3e-28
PRK13934266 PRK13934, PRK13934, stationary phase survival prot 1e-23
>gnl|CDD|216821 pfam01975, SurE, Survival protein SurE Back     alignment and domain information 
 Score =  196 bits (500), Expect = 4e-64
 Identities = 72/180 (40%), Positives = 103/180 (57%), Gaps = 11/180 (6%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG 76
           I++TNDDGI APG+R+L   L +     V V APD E+S V HSIT   P+  +  D   
Sbjct: 3   ILLTNDDGIHAPGIRALAEALKALGE--VTVVAPDREQSGVGHSITLHRPLRVKKVDP-- 58

Query: 77  VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHG 136
             AYAV+GTPADC  LG++  L    PDLV+SGIN G+N G  V+YSGTV  A EA   G
Sbjct: 59  -GAYAVNGTPADCVKLGLNGLLDDKKPDLVVSGINHGANLGTDVLYSGTVGAAMEAALLG 117

Query: 137 VPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN 196
           +PS+++S          +D+  AA+    ++  ++ ++     P    LN+++P   P+ 
Sbjct: 118 IPSIAVSLAG--NSEEKDDFETAAK----LVRRLVEKLLKNGLPPGTLLNVNIPDLPPSE 171

E. coli cells with the surE gene disrupted are found to survive poorly in stationary phase. It is suggested that SurE may be involved in stress response. Yeast also contains a member of the family, probable tubulin-tyrosine ligase PBY1. Yarrowia lipolytica PHO2 can complement a mutation in acid phosphatase, suggesting that members of this family could be phosphatases. Length = 188
>gnl|CDD|234732 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional Back     alignment and domain information
>gnl|CDD|223570 COG0496, SurE, Predicted acid phosphatase [General function prediction only] Back     alignment and domain information
>gnl|CDD|232819 TIGR00087, surE, 5'/3'-nucleotidase SurE Back     alignment and domain information
>gnl|CDD|237566 PRK13935, PRK13935, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|184406 PRK13933, PRK13933, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|172445 PRK13932, PRK13932, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|184405 PRK13931, PRK13931, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|237565 PRK13934, PRK13934, stationary phase survival protein SurE; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 213
PF01975196 SurE: Survival protein SurE; InterPro: IPR002828 T 100.0
PRK13932257 stationary phase survival protein SurE; Provisiona 100.0
PRK13933253 stationary phase survival protein SurE; Provisiona 100.0
PRK13935253 stationary phase survival protein SurE; Provisiona 100.0
TIGR00087244 surE 5'/3'-nucleotidase SurE. E. coli SurE is Reco 100.0
COG0496252 SurE Predicted acid phosphatase [General function 100.0
PRK00346250 surE 5'(3')-nucleotidase/polyphosphatase; Provisio 100.0
PRK13931261 stationary phase survival protein SurE; Provisiona 100.0
PRK13934266 stationary phase survival protein SurE; Provisiona 100.0
cd03784 401 GT1_Gtf_like This family includes the Gtfs, a grou 92.85
PLN02846 462 digalactosyldiacylglycerol synthase 92.38
PF04007 335 DUF354: Protein of unknown function (DUF354); Inte 91.12
PF14336291 DUF4392: Domain of unknown function (DUF4392) 86.64
PRK00726 357 murG undecaprenyldiphospho-muramoylpentapeptide be 86.35
cd03814 364 GT1_like_2 This family is most closely related to 84.94
cd03785 350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 84.21
TIGR01426 392 MGT glycosyltransferase, MGT family. This model de 83.53
TIGR00661 321 MJ1255 conserved hypothetical protein. This model 83.41
PF13439177 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 81.5
TIGR01133 348 murG undecaprenyldiphospho-muramoylpentapeptide be 81.47
PRK10307 412 putative glycosyl transferase; Provisional 80.9
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family Back     alignment and domain information 
Probab=100.00  E-value=1.7e-67  Score=446.52  Aligned_cols=187  Identities=42%  Similarity=0.643  Sum_probs=153.1

Q ss_pred             CeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeecc----cCCceeEEeCCChHHHH
Q 028146           15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD----FDGVTAYAVSGTPADCA   90 (213)
Q Consensus        15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~----~~g~~~~~v~GTPaDcV   90 (213)
                      |||||||||||+||||++|+++|++.| |||+||||++||||+||++|+++|++++++.    ..+...|+|+|||+|||
T Consensus         1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g-~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv   79 (196)
T PF01975_consen    1 MRILLTNDDGIDAPGIRALAKALSALG-HDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV   79 (196)
T ss_dssp             SEEEEE-SS-TTSHHHHHHHHHHTTTS-SEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHhcC-CeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence            899999999999999999999998887 7999999999999999999999999998764    35678999999999999


Q ss_pred             HHhhhccCCCC-CCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCccHHHHHHHHHHHHHH
Q 028146           91 SLGVSQALFPS-VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINA  169 (213)
Q Consensus        91 ~~al~~~l~~~-~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~  169 (213)
                      ++||+. ++++ +|||||||||+|.|+|.+++||||||||+||+++||||||||++.... ....+|+.+++++.+++++
T Consensus        80 ~~al~~-~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~~~-~~~~~~~~aa~~~~~~i~~  157 (196)
T PF01975_consen   80 KLALDG-LLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSDSE-SKDPDFETAARFAVKLIEK  157 (196)
T ss_dssp             HHHHHC-TSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESSST--SSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHh-hhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccccCC-CcHHHHHHHHHHHHHHHHH
Confidence            999996 5554 599999999999999999999999999999999999999999986531 1234799999999888888


Q ss_pred             HHHHHHhcCCCCCcEEEecCCCCC-CCCCceEEEeeeceE
Q 028146          170 ILAEIRNQTYPERCFLNIDLPTDI-PNNKVNSCINILIFY  208 (213)
Q Consensus       170 l~~~~~~~~~p~~~~lNVN~P~~~-~~~~g~~~tr~~~~~  208 (213)
                      ++    +..+|++++||||||..+ .+.+|+|+||++.++
T Consensus       158 ~~----~~~~~~~~~lNVN~P~~~~~~~~g~~~t~~g~~~  193 (196)
T PF01975_consen  158 LL----KNPLPPGVVLNVNFPSVPCEEIKGIKVTRLGRRR  193 (196)
T ss_dssp             HH----HSGSSTTSEEEEEEESS-GGG-SEEEE-B--CCS
T ss_pred             Hh----hcCCCCCcEEEEEcCCCCcccCCCEEEEECCcce
Confidence            76    455789999999999976 478999999999873

This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
>PRK13932 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK13933 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK13935 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>TIGR00087 surE 5'/3'-nucleotidase SurE Back     alignment and domain information
>COG0496 SurE Predicted acid phosphatase [General function prediction only] Back     alignment and domain information
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional Back     alignment and domain information
>PRK13931 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK13934 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PLN02846 digalactosyldiacylglycerol synthase Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>PF14336 DUF4392: Domain of unknown function (DUF4392) Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>TIGR01426 MGT glycosyltransferase, MGT family Back     alignment and domain information
>TIGR00661 MJ1255 conserved hypothetical protein Back     alignment and domain information
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
2wqk_A251 Crystal Structure Of Sure Protein From Aquifex Aeol 2e-28
2e69_A244 Crystal Structure Of The Stationary Phase Survival 6e-22
2e6h_A244 Crystal Structure Of E37a Mutant Of The Stationary 3e-21
1j9j_A247 Crystal Structure Analysis Of Sure Protein From T.M 8e-21
3ty2_A261 Structure Of A 5'-Nucleotidase (Sure) From Coxiella 3e-20
2v4n_A254 Crystal Structure Of Salmonella Typhimurium Sure At 3e-20
2v4o_A267 Crystal Structure Of Salmonella Typhimurium Sure At 3e-20
1ilv_A247 Crystal Structure Analysis Of The Tm107 Length = 24 7e-20
1l5x_A280 The 2.0-Angstrom Resolution Crystal Structure Of A 1e-16
>pdb|2WQK|A Chain A, Crystal Structure Of Sure Protein From Aquifex Aeolicus Length = 251 Back     alignment and structure 
Iteration: 1

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 98/176 (55%), Gaps = 12/176 (6%)
Query: 15  PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF 74
           PT ++ NDDG  +PG+ +L   L S  R  V V APD   S V HS+T+  P+  R  D 
Sbjct: 2   PTFLLVNDDGYFSPGINALREALKSLGR--VVVVAPDRNLSGVGHSLTFTEPLKMRKIDT 59
Query: 75  DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFF 134
           D  T   + GTPADC  LG    L    PDLV+SGIN G N G  + YSGTV+GA E   
Sbjct: 60  DFYTV--IDGTPADCVHLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRI 117
Query: 135 HGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP 190
            G+PS++ S     G+ N+  +   A+ C+ I+  +L    N+  PE  +LN+++P
Sbjct: 118 LGIPSIAFS---AFGRENIM-FEEIAKVCVDIVKKVL----NEGIPEDTYLNVNIP 165
>pdb|2E69|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein Sure From Thermus Thermophilus Hb8 In Complex With Sulfate Length = 244 Back     alignment and structure
>pdb|2E6H|A Chain A, Crystal Structure Of E37a Mutant Of The Stationary Phase Survival Protein Sure From Thermus Thermophilus Hb8 Cocrystallized With Manganese And Amp Length = 244 Back     alignment and structure
>pdb|1J9J|A Chain A, Crystal Structure Analysis Of Sure Protein From T.Maritima Length = 247 Back     alignment and structure
>pdb|3TY2|A Chain A, Structure Of A 5'-Nucleotidase (Sure) From Coxiella Burnetii Length = 261 Back     alignment and structure
>pdb|2V4N|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 1.7 Angstrom Resolution In Orthorhombic Form Length = 254 Back     alignment and structure
>pdb|2V4O|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 2.75 Angstrom Resolution In Monoclinic Form Length = 267 Back     alignment and structure
>pdb|1ILV|A Chain A, Crystal Structure Analysis Of The Tm107 Length = 247 Back     alignment and structure
>pdb|1L5X|A Chain A, The 2.0-Angstrom Resolution Crystal Structure Of A Survival Protein E (Sure) Homolog From Pyrobaculum Aerophilum Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
1j9j_A247 Stationary phase surviVal protein; SURE protein, u 9e-61
3ty2_A261 5'-nucleotidase SURE; surviVal protein, phosphatas 3e-60
2phj_A251 5'-nucleotidase SURE; SURE protein, putative acid 7e-60
1l5x_A280 SurviVal protein E; structural genomics, putative 3e-59
2v4n_A254 Multifunctional protein SUR E; hydrolase, surviVal 3e-59
2e6c_A244 5'-nucleotidase SURE; SURE protein, cowith mangane 5e-58
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Length = 247 Back     alignment and structure
 Score =  189 bits (482), Expect = 9e-61
 Identities = 60/177 (33%), Positives = 90/177 (50%), Gaps = 12/177 (6%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-D 75
           I+VTNDDGI + G+  L  +L  +  + V V APD E+SA  HSIT   P+  +     +
Sbjct: 3   ILVTNDDGIQSKGIIVLAELL--SEEHEVFVVAPDKERSATGHSITIHVPLWMKKVFISE 60

Query: 76  GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFH 135
            V AY+ +GTPADC  L  +  +     DL++SG+N G N G  +++SGTV+GA E    
Sbjct: 61  RVVAYSTTGTPADCVKLAYN-VVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMM 119

Query: 136 GVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTD 192
            +PS++IS        +  D+  AA   +  +                 LNI++P  
Sbjct: 120 NIPSIAISSA---NYESP-DFEGAARFLIDFLKEFDF----SLLDPFTMLNINVPAG 168
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} Length = 261 Back     alignment and structure
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Length = 280 Back     alignment and structure
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Length = 254 Back     alignment and structure
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Length = 244 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query213
1j9j_A247 Stationary phase surviVal protein; SURE protein, u 100.0
2phj_A251 5'-nucleotidase SURE; SURE protein, putative acid 100.0
3ty2_A261 5'-nucleotidase SURE; surviVal protein, phosphatas 100.0
2wqk_A251 5'-nucleotidase SURE; SURE protein, putative acid 100.0
2v4n_A254 Multifunctional protein SUR E; hydrolase, surviVal 100.0
2e6c_A244 5'-nucleotidase SURE; SURE protein, cowith mangane 100.0
1l5x_A280 SurviVal protein E; structural genomics, putative 100.0
3oti_A 398 CALG3; calicheamicin, TDP, structural genomics, PS 95.61
3rsc_A 415 CALG2; TDP, enediyne, structural genomics, PSI-2, 94.9
3otg_A 412 CALG1; calicheamicin, TDP, structural genomics, PS 94.69
4fzr_A 398 SSFS6; structural genomics, PSI-biology, protein s 94.17
3ia7_A 402 CALG4; glycosysltransferase, calicheamicin, enediy 93.68
2iya_A 424 OLEI, oleandomycin glycosyltransferase; carbohydra 93.15
3tsa_A 391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 93.03
2iyf_A 430 OLED, oleandomycin glycosyltransferase; antibiotic 92.59
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 89.21
4amg_A 400 Snogd; transferase, polyketide biosynthesis, GT1 f 84.36
2iuy_A 342 Avigt4, glycosyltransferase; antibiotics, family G 82.61
2r60_A 499 Glycosyl transferase, group 1; rossmann-fold; 1.80 81.5
2yjn_A 441 ERYCIII, glycosyltransferase; transferase, cytochr 81.08
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Back     alignment and structure
Probab=100.00  E-value=8.9e-68  Score=460.81  Aligned_cols=181  Identities=34%  Similarity=0.455  Sum_probs=164.1

Q ss_pred             CeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeecccC-CceeEEeCCChHHHHHHh
Q 028146           15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADCASLG   93 (213)
Q Consensus        15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~-g~~~~~v~GTPaDcV~~a   93 (213)
                      |||||||||||.||||++|+++|++.|  +|+||||++||||+||++|+++||++++++.. +...|+|+|||+|||++|
T Consensus         1 M~ILlTNDDGi~apGi~aL~~~l~~~g--~V~VVAP~~~~Sg~g~siTl~~pl~~~~~~~~~~~~~~~v~GTPaDCV~la   78 (247)
T 1j9j_A            1 MRILVTNDDGIQSKGIIVLAELLSEEH--EVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLA   78 (247)
T ss_dssp             CEEEEECSSCTTCHHHHHHHHHHTTTS--EEEEEEESSCCTTCTTCCCCSSCCCEEECCCSSSEEEEEESSCHHHHHHHH
T ss_pred             CeEEEEcCCCCCcHhHHHHHHHHHhCC--CEEEEecCCCCcCCcccccCCCCeEEEEeccCCCCceEEECCcHHHHHHHH
Confidence            799999999999999999999999877  99999999999999999999999999998643 446799999999999999


Q ss_pred             hhccCCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCccHHHHHHHHHHHHHHHHHH
Q 028146           94 VSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAE  173 (213)
Q Consensus        94 l~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~~  173 (213)
                      |++ +++++|||||||||+|.|+|.+++||||||||+||+++||||||||+...    .+.+|+.|++++++++++++  
T Consensus        79 l~~-l~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~----~~~~~~~aa~~~~~lv~~l~--  151 (247)
T 1j9j_A           79 YNV-VMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANY----ESPDFEGAARFLIDFLKEFD--  151 (247)
T ss_dssp             HHT-TSTTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCS----SSCCHHHHHHHHHHHHHHCC--
T ss_pred             HHh-hccCCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEecCCC----CCCCHHHHHHHHHHHHHHHH--
Confidence            996 66889999999999999999999999999999999999999999999642    23489999999998888765  


Q ss_pred             HHhcCCCCCcEEEecCCCCCCCCCceEEEeeeceE
Q 028146          174 IRNQTYPERCFLNIDLPTDIPNNKVNSCINILIFY  208 (213)
Q Consensus       174 ~~~~~~p~~~~lNVN~P~~~~~~~g~~~tr~~~~~  208 (213)
                        +..+|++++||||||  ..++||+|+||++.++
T Consensus       152 --~~~lp~~~~lNVN~P--~~~~~g~~~tr~~~~~  182 (247)
T 1j9j_A          152 --FSLLDPFTMLNINVP--AGEIKGWRFTRQSRRR  182 (247)
T ss_dssp             --GGGSCTTCEEEEEEC--SSCCCEEEECBCCCCE
T ss_pred             --HcCCCcccEEEecCC--ccccCceEEEECCCcc
Confidence              456899999999999  5679999999999873
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0 Back     alignment and structure
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus} Back     alignment and structure
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Back     alignment and structure
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Back     alignment and structure
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 213
d1l5xa_276 c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) { 5e-43
d1j9ja_247 c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga mar 7e-39
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SurE-like
superfamily: SurE-like
family: SurE-like
domain: SurE homolog PAE2908 (SurE-alpha)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score =  143 bits (362), Expect = 5e-43
 Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 5/187 (2%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG 76
           I+VTNDDG+ +PGLR L +  +S     V V AP+S KSA    IT   P+     D  G
Sbjct: 3   ILVTNDDGVHSPGLRLLYQFALS--LGDVDVVAPESPKSATGLGITLHKPLRMYEVDLCG 60

Query: 77  VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVY-SGTVAGAREAFFH 135
             A A SGTP+D   L           D+V+SGIN+G N    V+  SGT+  A +A   
Sbjct: 61  FRAIATSGTPSDTVYLATFGLGRK--YDIVLSGINLGDNTSLQVILSSGTLGAAFQAALL 118

Query: 136 GVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPN 195
           G+P+++ S         +N+          + +     ++N        ++++ P  +  
Sbjct: 119 GIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTASYVLKNGMPQGVDVISVNFPRRLGR 178

Query: 196 NKVNSCI 202
                 +
Sbjct: 179 GVRAKLV 185
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query213
d1j9ja_247 SurE homolog TM1662 {Thermotoga maritima [TaxId: 2 100.0
d1l5xa_276 SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyroba 100.0
d1rzua_ 477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 91.3
d2bisa1 437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 90.98
d1pn3a_ 391 TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi 85.67
d1qo0d_189 Positive regulator of the amidase operon AmiR {Pse 81.44
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SurE-like
superfamily: SurE-like
family: SurE-like
domain: SurE homolog TM1662
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.2e-66  Score=447.36  Aligned_cols=181  Identities=34%  Similarity=0.457  Sum_probs=164.2

Q ss_pred             CeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeeccc-CCceeEEeCCChHHHHHHh
Q 028146           15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLG   93 (213)
Q Consensus        15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~-~g~~~~~v~GTPaDcV~~a   93 (213)
                      |||||||||||+||||++|+++|++ + |+|+||||++||||+|||+|+++|++++++.. ++..+|+|+|||||||++|
T Consensus         1 M~ILltNDDGi~s~gl~~L~~~l~~-~-~~V~vvAP~~~~S~~g~ait~~~~l~~~~~~~~~~~~~~~v~GTPaDcv~~a   78 (247)
T d1j9ja_           1 MRILVTNDDGIQSKGIIVLAELLSE-E-HEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLA   78 (247)
T ss_dssp             CEEEEECSSCTTCHHHHHHHHHHTT-T-SEEEEEEESSCCTTCTTCCCCSSCCCEEECCCSSSEEEEEESSCHHHHHHHH
T ss_pred             CeEEEEcCCCCCChHHHHHHHHHhc-C-CeEEEEecCCCCcCCcccccCCCCcceEEeecCCCceEEEeCCchHHHHHHh
Confidence            8999999999999999999999976 4 69999999999999999999999999999865 4567899999999999999


Q ss_pred             hhccCCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCccHHHHHHHHHHHHHHHHHH
Q 028146           94 VSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAE  173 (213)
Q Consensus        94 l~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~~  173 (213)
                      |+. +++.+|||||||||+|.|+|.|++||||||||+||+++||||||+|+...    ++.+|+.+++++.++++++.  
T Consensus        79 l~~-l~~~~pDlVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~gipsiA~S~~~~----~~~~~~~a~~~~~~li~~l~--  151 (247)
T d1j9ja_          79 YNV-VMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANY----ESPDFEGAARFLIDFLKEFD--  151 (247)
T ss_dssp             HHT-TSTTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCS----SSCCHHHHHHHHHHHHHHCC--
T ss_pred             hhh-cccCcccEEEecccCCCccchhhhhHHHHHHHHHHHhcCCCcceehhhhh----cccchhHHHHHHHHHHHHHH--
Confidence            985 67889999999999999999999999999999999999999999999753    34589999999988877764  


Q ss_pred             HHhcCCCCCcEEEecCCCCCCCCCceEEEeeeceE
Q 028146          174 IRNQTYPERCFLNIDLPTDIPNNKVNSCINILIFY  208 (213)
Q Consensus       174 ~~~~~~p~~~~lNVN~P~~~~~~~g~~~tr~~~~~  208 (213)
                        +..+|++.+||||||.  .+.+|+|+|+++.++
T Consensus       152 --~~~~p~~~~lNVN~P~--~~~kG~k~t~~g~~~  182 (247)
T d1j9ja_         152 --FSLLDPFTMLNINVPA--GEIKGWRFTRQSRRR  182 (247)
T ss_dssp             --GGGSCTTCEEEEEECS--SCCCEEEECBCCCCE
T ss_pred             --hcCCcccccccCCCCh--hhccCceeeeecccc
Confidence              4568999999999996  468999999999874
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure