Citrus Sinensis ID: 028157

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
MGLDRSSVSIISKTNTSYFSYCLPSPYGSTAYITFGKPVSVSNKFIKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVYAALRSAFRKRMKKYKKAKEFEDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNCS
ccccccccHHHHHcccccEEEEccccccccEEEEEcccccccccccEEEcccccccccccEEEEEEEEEEccEEEcccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEccccccccccEEEEEEccccEEEEccccEEEEEcccEEEEEEEEccccccEEEEccEEEEEEEEEEEccccEEEEEccccc
ccccccccccHHHccccEEEEEEccccccccEEEEcccccccccccEEcccccccccccEEEEEEEEEEEccEEEcccccHcccccEEEEcccEEEcccHHHHHHHHHHHHHHHccccccccccccccccEccccccEEEccEEEEEEcccEEEEcccccEEEEccccEEEEEEEEccccccEEEEEEEEcccEEEEEEccccEEEEcccccc
mgldrssvsiisktntsyfsyclpspygstayitfgkpvsvsnkfikytpivttaeqSEYYDIILTGisvggeklpfKISYFTKLSteidsgniitrlpspVYAALRSAFRKRMKKYKKAKEFEDLlgtcydlsayetvVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLEfaiyppdlnsitlgnvqqrghevhydvggrrlgfgpgncs
MGLDRSSVSIISKTNTSYFSYCLPSPYGSTAYITFGKPVSVSNKFIKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSteidsgniitrlpspvYAALRSAFRKRMKKYKKAKEFEDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHydvggrrlgfgpgncs
MGLDRSSVSIISKTNTSYFSYCLPSPYGSTAYITFGKPVSVSNKFIKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVYAALRSafrkrmkkykkakefeDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNCS
*********IISKTNTSYFSYCLPSPYGSTAYITFGKPVSVSNKFIKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVYAALRSAFRKRMKKYKKAKEFEDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLG*******
MGLDRSSVSIISKTNTSYFSYCLPSPYGSTAYITFGKPVSVSNKFIKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVYAALRSAFRKRMKKYKK*KEFEDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNCS
MGLDRSSVSIISKTNTSYFSYCLPSPYGSTAYITFGKPVSVSNKFIKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVYAALRSAFRKRMKKYKKAKEFEDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNCS
*****SSVSIISKTNTSYFSYCLPSPYGSTAYITFGKPVSVSNKFIKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVYAALRSAFRKRMKKYKKAKEFEDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGLDRSSVSIISKTNTSYFSYCLPSPYGSTAYITFGKPVSVSNKFIKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVYAALRSAFRKRMKKYKKAKEFEDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query213 2.2.26 [Sep-21-2011]
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.943 0.402 0.330 2e-19
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.934 0.423 0.327 3e-16
Q6XBF8437 Aspartic proteinase CDR1 no no 0.877 0.427 0.328 1e-15
Q766C2438 Aspartic proteinase nepen N/A no 0.971 0.472 0.307 1e-14
Q766C3437 Aspartic proteinase nepen N/A no 0.948 0.462 0.278 5e-12
Q9LZL3453 Aspartic proteinase PCS1 no no 0.971 0.456 0.267 3e-11
Q3EBM5447 Probable aspartic proteas no no 0.938 0.447 0.292 6e-10
Q9Y5Z0518 Beta-secretase 2 OS=Homo yes no 0.741 0.305 0.258 6e-06
Q9JL18514 Beta-secretase 2 OS=Mus m yes no 0.741 0.307 0.258 3e-05
Q6IE75514 Beta-secretase 2 OS=Rattu yes no 0.741 0.307 0.258 3e-05
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function desciption
 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 99/212 (46%), Gaps = 11/212 (5%)

Query: 8   VSIISKTNTSYFSYCL-PSPYGSTAYITFGKPVSVSNKFIKYTPIVTTAEQSEYYDIILT 66
           +SI ++   + FSYCL     G ++ + F   V +        P++   +   +Y + L+
Sbjct: 293 LSITNQMKATSFSYCLVDRDSGKSSSLDFNS-VQLGGG-DATAPLLRNKKIDTFYYVGLS 350

Query: 67  GISVGGEK--LP---FKISYFTKLSTEIDSGNIITRLPSPVYAALRSAFRKRMKKYKKAK 121
           G SVGGEK  LP   F +         +D G  +TRL +  Y +LR AF K     KK  
Sbjct: 351 GFSVGGEKVVLPDAIFDVDASGSGGVILDCGTAVTRLQTQAYNSLRDAFLKLTVNLKKGS 410

Query: 122 EFEDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV-VASVSQVCLEFAIYPPD 180
               L  TCYD S+  TV VP +A HF GG  L+L  +  L+ V      C  FA     
Sbjct: 411 SSISLFDTCYDFSSLSTVKVPTVAFHFTGGKSLDLPAKNYLIPVDDSGTFCFAFAPTSSS 470

Query: 181 LNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
           L+ I  GNVQQ+G  + YD+    +G     C
Sbjct: 471 LSII--GNVQQQGTRITYDLSKNVIGLSGNKC 500
Aspartic protease involved in drought avoidance through abscisic acid signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9Y5Z0|BACE2_HUMAN Beta-secretase 2 OS=Homo sapiens GN=BACE2 PE=1 SV=1 Back     alignment and function description
>sp|Q9JL18|BACE2_MOUSE Beta-secretase 2 OS=Mus musculus GN=Bace2 PE=2 SV=1 Back     alignment and function description
>sp|Q6IE75|BACE2_RAT Beta-secretase 2 OS=Rattus norvegicus GN=Bace2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query213
255548662 463 Aspartic proteinase nepenthesin-2 precur 0.967 0.444 0.467 5e-44
356524289 392 PREDICTED: LOW QUALITY PROTEIN: aspartic 0.985 0.535 0.476 7e-44
225430555 481 PREDICTED: aspartic proteinase nepenthes 0.985 0.436 0.446 6e-43
356524287 481 PREDICTED: aspartic proteinase nepenthes 0.990 0.438 0.460 3e-42
22326716 474 aspartyl protease family protein [Arabid 0.985 0.443 0.444 3e-42
8979711 446 nucleoid DNA-binding protein cnd41-like 0.985 0.470 0.439 3e-42
297811185 475 hypothetical protein ARALYDRAFT_325615 [ 0.985 0.442 0.439 8e-42
224142001 490 predicted protein [Populus trichocarpa] 0.962 0.418 0.443 6e-41
356527091 482 PREDICTED: aspartic proteinase nepenthes 0.990 0.437 0.456 5e-40
449466304 473 PREDICTED: protein ASPARTIC PROTEASE IN 0.981 0.441 0.437 7e-40
>gi|255548662|ref|XP_002515387.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] gi|223545331|gb|EEF46836.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/216 (46%), Positives = 134/216 (62%), Gaps = 10/216 (4%)

Query: 1   MGLDRSSVSIISKTNTSY---FSYCLPSPYGSTAYITFGKPVSVSNKFIKYTPIVTTAEQ 57
           +GL R  +S++S+T   Y   FSYCLPS   ST +++FG   S S KF   TP+  ++  
Sbjct: 255 LGLGRDKLSVVSQTAPKYNQLFSYCLPSS-SSTGFLSFGSSQSKSAKF---TPL--SSGP 308

Query: 58  SEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVYAALRSAFRKRMKKY 117
           S +Y++ LTGI+VGG+KL   +S F+   T IDSG ++TRLP   Y+ALRSAFRK M  Y
Sbjct: 309 SSFYNLDLTGITVGGQKLAIPLSVFSTAGTIIDSGTVVTRLPPAAYSALRSAFRKAMASY 368

Query: 118 KKAKEFEDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLEFAIY 177
              K    +L TCYD S Y+T+ VPKI I F GGVD+++D  G  V   + QVCL FA  
Sbjct: 369 PMGKPLS-ILDTCYDFSKYKTIKVPKIVISFSGGVDVDVDQAGIFVANGLKQVCLAFAGN 427

Query: 178 PPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNCS 213
               ++   GN QQR  EV YDV G ++GF P +CS
Sbjct: 428 TGARDTAIFGNTQQRNFEVVYDVSGGKVGFAPASCS 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356524289|ref|XP_003530762.1| PREDICTED: LOW QUALITY PROTEIN: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|225430555|ref|XP_002285593.1| PREDICTED: aspartic proteinase nepenthesin-2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356524287|ref|XP_003530761.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|22326716|ref|NP_196638.2| aspartyl protease family protein [Arabidopsis thaliana] gi|18700103|gb|AAL77663.1| AT5g10770/T30N20_40 [Arabidopsis thaliana] gi|24111269|gb|AAN46758.1| At5g10770/T30N20_40 [Arabidopsis thaliana] gi|332004211|gb|AED91594.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8979711|emb|CAB96832.1| nucleoid DNA-binding protein cnd41-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297811185|ref|XP_002873476.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] gi|297319313|gb|EFH49735.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224142001|ref|XP_002324349.1| predicted protein [Populus trichocarpa] gi|222865783|gb|EEF02914.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356527091|ref|XP_003532147.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|449466304|ref|XP_004150866.1| PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus] gi|449485213|ref|XP_004157102.1| PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query213
TAIR|locus:2183730474 AT5G10770 "AT5G10770" [Arabido 0.985 0.443 0.425 6.8e-40
TAIR|locus:2183715464 AT5G10760 [Arabidopsis thalian 0.967 0.443 0.402 4.2e-31
TAIR|locus:2017799484 AT1G79720 [Arabidopsis thalian 0.976 0.429 0.368 1.2e-27
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.962 0.424 0.345 8.2e-23
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.971 0.426 0.324 1.8e-22
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.943 0.416 0.349 3.8e-22
TAIR|locus:2024306449 AT1G09750 [Arabidopsis thalian 0.953 0.452 0.331 7.7e-22
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.971 0.414 0.304 8.6e-20
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.953 0.431 0.316 2e-19
TAIR|locus:2096139425 AT3G54400 [Arabidopsis thalian 0.957 0.48 0.309 8.1e-17
TAIR|locus:2183730 AT5G10770 "AT5G10770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 92/216 (42%), Positives = 123/216 (56%)

Query:     1 MGLDRSSVSIISKTNTSY---FSYCLPSPYGSTAYITFGKPVSVSNKFIKYTPIVTTAEQ 57
             +GL R  +S  S+T T+Y   FSYCLPS    T ++TFG    +S   +K+TPI T  + 
Sbjct:   262 LGLGRDKLSFPSQTATAYNKIFSYCLPSSASYTGHLTFGS-AGISRS-VKFTPISTITDG 319

Query:    58 SEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVYAALRSXXXXXXXXX 117
             + +Y + +  I+VGG+KLP   + F+     IDSG +ITRLP   YAALRS         
Sbjct:   320 TSFYGLNIVAITVGGQKLPIPSTVFSTPGALIDSGTVITRLPPKAYAALRSSFKAKMSKY 379

Query:   118 XXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLEFAIY 177
                     +L TC+DLS ++TV +PK+A  F GG  +EL  +G   V  +SQVCL FA  
Sbjct:   380 PTTSGVS-ILDTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGIFYVFKISQVCLAFAGN 438

Query:   178 PPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNCS 213
               D N+   GNVQQ+  EV YD  G R+GF P  CS
Sbjct:   439 SDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGCS 474
GO:0003677 "DNA binding" evidence=ISS
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
TAIR|locus:2183715 AT5G10760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017799 AT1G79720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024306 AT1G09750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096139 AT3G54400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032824001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (481 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 7e-70
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 3e-33
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 3e-19
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 2e-15
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 3e-13
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 4e-07
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 0.002
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information 
 Score =  214 bits (548), Expect = 7e-70
 Identities = 100/217 (46%), Positives = 128/217 (58%), Gaps = 7/217 (3%)

Query: 1   MGLDRSSVSIISKTNTSY---FSYCLPS-PYGSTAYITFGKPVSVSNKFIKYTPIVTTAE 56
           +GL R  +S+ S+T +SY   FSYCLP     S+ Y++FG   SV      +TP+++   
Sbjct: 85  LGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSGYLSFGAAASVPAGA-SFTPMLSNPR 143

Query: 57  QSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVYAALRSAFRKRMKK 116
              +Y + LTGISVGG +LP   + F      IDSG +ITRLP   YAALR AFR  M  
Sbjct: 144 VPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAA 203

Query: 117 YKKAKEFEDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTL-VVASVSQVCLEFA 175
           Y +A  F  +L TCYDLS + +V VP +++HF GG D+ELD  G L  V   SQVCL FA
Sbjct: 204 YPRAPGF-SILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFA 262

Query: 176 IYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
               D     +GNVQQ+   V YDV G R+GF PG C
Sbjct: 263 GTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 213
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
PLN03146431 aspartyl protease family protein; Provisional 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 99.98
PTZ00147453 plasmepsin-1; Provisional 99.97
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 99.95
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 99.95
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 99.95
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.51
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 94.33
PF1365090 Asp_protease_2: Aspartyl protease 93.84
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 93.59
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 93.03
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 92.79
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 92.78
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 91.97
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 90.25
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 88.51
cd0548193 retropepsin_like_LTR_1 Retropepsins_like_LTR; peps 84.66
PF09668124 Asp_protease: Aspartyl protease; InterPro: IPR0191 84.5
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information 
Probab=100.00  E-value=8.7e-43  Score=295.51  Aligned_cols=210  Identities=26%  Similarity=0.401  Sum_probs=171.1

Q ss_pred             CCCCCCCChhhhhhCcC-----ceEEecCCCCCCccEEEECCCCC-CC------CCCeeEeecccCCCCCcceEEEEeEE
Q 028157            1 MGLDRSSVSIISKTNTS-----YFSYCLPSPYGSTAYITFGKPVS-VS------NKFIKYTPIVTTAEQSEYYDIILTGI   68 (213)
Q Consensus         1 ~Glg~~~~sl~~ql~~~-----~FS~cl~~~~~~~g~l~fG~~~~-~~------~~~~~y~pl~~~~~~~~~y~v~l~~i   68 (213)
                      ||||++++|+++||..+     .|||||++....+|+|+||+.+. .+      .+.+.||||++++..+.+|+|+|++|
T Consensus       129 lGLg~~~lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~I  208 (362)
T cd05489         129 AGLGRSPLSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSI  208 (362)
T ss_pred             cccCCCccchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEE
Confidence            79999999999999863     49999987644689999999885 33      37899999998754457999999999


Q ss_pred             EECCeEeeccccccC-----CCcEEEecCCcceecChhHHHHHHHHHHHHhhhccccccccccccccccccCC----cce
Q 028157           69 SVGGEKLPFKISYFT-----KLSTEIDSGNIITRLPSPVYAALRSAFRKRMKKYKKAKEFEDLLGTCYDLSAY----ETV  139 (213)
Q Consensus        69 ~vg~~~~~~~~~~~~-----~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~----~~~  139 (213)
                      +||++.+.+++..+.     .+++||||||++|+||+++|++|++++.+++...+.........+.||.....    ...
T Consensus       209 sVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~  288 (362)
T cd05489         209 AVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGY  288 (362)
T ss_pred             EECCEECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCccccc
Confidence            999999987654332     26899999999999999999999999998876433222211223689976431    135


Q ss_pred             ecCeEEEEEeC-CcEEEEcCCceEEEeCCCceEEEEEecCCC-CCeeEecceeeeeeEEEEeCCCCEEEEeeC
Q 028157          140 VVPKIAIHFLG-GVDLELDVRGTLVVASVSQVCLEFAIYPPD-LNSITLGNVQQRGHEVHYDVGGRRLGFGPG  210 (213)
Q Consensus       140 ~~P~l~~~f~~-g~~~~l~~~~y~~~~~~~~~C~~~~~~~~~-~~~~ilG~~~~~~~~~vfD~~~~riGfa~~  210 (213)
                      .+|+|+|+|++ |++|+|+|++|++++..+..|++|...+.. ...||||+.|||+++++||++++|||||++
T Consensus       289 ~~P~it~~f~g~g~~~~l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~  361 (362)
T cd05489         289 AVPAIDLVLDGGGVNWTIFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS  361 (362)
T ss_pred             ccceEEEEEeCCCeEEEEcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence            79999999987 799999999999988777899999865422 357999999999999999999999999975

Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats Back     alignment and domain information
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
2q11_A388 Structure Of Bace Complexed To Compound 1 Length = 1e-05
2vie_A392 Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2- 1e-05
2q15_A385 Structure Of Bace Complexed To Compound 3a Length = 1e-05
4b1c_A375 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 1e-05
2qk5_A395 Structure Of Bace1 Bound To Sch626485 Length = 395 2e-05
2fdp_A388 Crystal Structure Of Beta-Secretase Complexed With 2e-05
3udh_A404 Crystal Structure Of Bace With Compound 1 Length = 2e-05
4b1d_A388 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 2e-05
2wjo_A412 Human Bace (Beta Secretase) In Complex With Cyclohe 2e-05
4dpf_A391 Bace-1 In Complex With A Hea-Macrocyclic Type Inhib 2e-05
3u6a_A390 Rational Design And Synthesis Of Aminopiperazinones 2e-05
1fkn_A391 Structure Of Beta-Secretase Complexed With Inhibito 2e-05
1sgz_A389 Crystal Structure Of Unbound Beta-Secretase Catalyt 2e-05
3cib_A390 Structure Of Bace Bound To Sch727596 Length = 390 2e-05
2hm1_A406 Crystal Structure Of Human Beta-Secretase (Bace) In 2e-05
4ewo_A386 Design And Synthesis Of Potent Hydroxyethylamine (H 2e-05
3kmx_A395 Structure Of Bace Bound To Sch346572 Length = 395 2e-05
3r1g_B402 Structure Basis Of Allosteric Inhibition Of Bace1 B 2e-05
2zji_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 2e-05
1tqf_A405 Crystal Structure Of Human Beta Secretase Complexed 2e-05
2zhr_A411 Crystal Structure Of Bace1 In Complex With Om99-2 A 2e-05
2qzl_A411 Crystal Structure Of Human Beta Secretase Complexed 2e-05
2zjk_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 2e-05
3ckp_A412 Crystal Structure Of Bace-1 In Complex With Inhibit 2e-05
3l58_A414 Structure Of Bace Bound To Sch589432 Length = 414 2e-05
2of0_A402 X-Ray Crystal Structure Of Beta Secretase Complexed 2e-05
3qi1_A408 Design And Synthesis Of Hydroxyethylamine (Hea) Bac 2e-05
3exo_A413 Crystal Structure Of Bace1 Bound To Inhibitor Lengt 2e-05
2zjn_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 2e-05
3tpj_A433 Apo Structure Of Bace1 Length = 433 2e-05
3ixk_A405 Potent Beta-Secretase 1 Inhibitor Length = 405 2e-05
3hvg_A411 Structure Of Bace (Beta Secretase) In Complex With 2e-05
3dm6_A406 Beta-Secretase 1 Complexed With Statine-Based Inhib 2e-05
2qu2_A415 Bace1 With Compound 1 Length = 415 2e-05
1w50_A411 Apo Structure Of Bace (beta Secretase) Length = 411 3e-05
1ym2_A402 Crystal Structure Of Human Beta Secretase Complexed 3e-05
3vv6_A416 Crystal Structure Of Beta Secetase In Complex With 3e-05
1ym4_A408 Crystal Structure Of Human Beta Secretase Complexed 3e-05
3tpr_A433 Crystal Structure Of Bace1 Complexed With An Inhibi 3e-05
2zjj_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 4e-05
2va5_A455 X-Ray Crystal Structure Of Beta Secretase Complexed 4e-05
3lpi_A455 Structure Of Bace Bound To Sch745132 Length = 455 4e-05
2hiz_A455 Crystal Structure Of Human Beta-Secretase (Bace) In 4e-05
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 4e-05
2zjh_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 6e-05
3bra_A409 Bace-1 Complexed With Compound 1 Length = 409 7e-05
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388 Back     alignment and structure 
Iteration: 1

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46  IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
           + YTPI     +  YY++I+  + + G+ L      +    + +DSG    RLP  V+ A
Sbjct: 191 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 246
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
           A++S                     C+        + P I+++ +G V  +   R T++ 
Sbjct: 247 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEV-TQQSFRITILP 305
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
                    VA+    C +FAI      ++ +G V   G  V +D   +R+GF    C
Sbjct: 306 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 362
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392 Back     alignment and structure
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385 Back     alignment and structure
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 375 Back     alignment and structure
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395 Back     alignment and structure
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388 Back     alignment and structure
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404 Back     alignment and structure
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388 Back     alignment and structure
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412 Back     alignment and structure
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391 Back     alignment and structure
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390 Back     alignment and structure
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391 Back     alignment and structure
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389 Back     alignment and structure
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390 Back     alignment and structure
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406 Back     alignment and structure
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386 Back     alignment and structure
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395 Back     alignment and structure
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402 Back     alignment and structure
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(2, 6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto- Butyramide Length = 405 Back     alignment and structure
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405 Back     alignment and structure
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411 Back     alignment and structure
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411 Back     alignment and structure
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405 Back     alignment and structure
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412 Back     alignment and structure
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414 Back     alignment and structure
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402 Back     alignment and structure
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408 Back     alignment and structure
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413 Back     alignment and structure
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405 Back     alignment and structure
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433 Back     alignment and structure
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405 Back     alignment and structure
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411 Back     alignment and structure
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406 Back     alignment and structure
>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415 Back     alignment and structure
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411 Back     alignment and structure
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402 Back     alignment and structure
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416 Back     alignment and structure
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408 Back     alignment and structure
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433 Back     alignment and structure
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid (2-Mercapto-Ethyl)- Amide Length = 405 Back     alignment and structure
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 8c Length = 455 Back     alignment and structure
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132 Length = 455 Back     alignment and structure
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor Length = 455 Back     alignment and structure
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide Length = 405 Back     alignment and structure
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1 Length = 409 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 7e-42
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 5e-39
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 3e-37
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 4e-07
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 4e-06
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 8e-05
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 2e-04
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 5e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  145 bits (366), Expect = 7e-42
 Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 23/233 (9%)

Query: 1   MGLDRSSVSIISKTNTSY-----FSYCLPSPYGSTAYITFG--------KPVSVSNKFIK 47
            GL  + +S+ ++  + +     F+ CL     S   I FG                 + 
Sbjct: 159 AGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLA 218

Query: 48  YTPIVTTAEQSEYYDIILTGISVGGEKLP------FKISYFTKLSTEIDSGNIITRLPSP 101
           +TP+  T +    Y++ +  I +    +         I   T   T I +      L   
Sbjct: 219 FTPLTITLQG--EYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQS 276

Query: 102 VYAALRSAFRKRMKKYKKAKEFEDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGT 161
           VY A    F +++ K  + K      G C++ +         + +    G    +     
Sbjct: 277 VYQAFTQVFAQQLPKQAQVKSVAPF-GLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDL 335

Query: 162 LVVASVSQVCLEFAIYPPD-LNSITLGNVQQRGHEVHYDVGGRRLGFGPGNCS 213
           +V A     CL            ITLG  Q   + V +D+   R+GF   +  
Sbjct: 336 MVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLH 388
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query213
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 99.77
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.75
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 89.44
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 88.05
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=2.7e-43  Score=302.58  Aligned_cols=210  Identities=23%  Similarity=0.348  Sum_probs=173.3

Q ss_pred             CCCCCCCChhhhhhCc-----CceEEecCCCCCCccEEEECCCCCC------CCCC-eeEeecccCCCC----------C
Q 028157            1 MGLDRSSVSIISKTNT-----SYFSYCLPSPYGSTAYITFGKPVSV------SNKF-IKYTPIVTTAEQ----------S   58 (213)
Q Consensus         1 ~Glg~~~~sl~~ql~~-----~~FS~cl~~~~~~~g~l~fG~~~~~------~~~~-~~y~pl~~~~~~----------~   58 (213)
                      ||||++++|+++||..     ..||+||++....+|+|+||+.+..      +.++ +.||||++++..          .
T Consensus       155 lGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~~  234 (413)
T 3vla_A          155 AGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPS  234 (413)
T ss_dssp             EECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCCC
T ss_pred             cccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCCC
Confidence            6999999999999986     4599999985446899999999852      4677 999999987532          2


Q ss_pred             cceEEEEeEEEECCeEeeccccccC-----CCcEEEecCCcceecChhHHHHHHHHHHHHhh--hccccccccccccccc
Q 028157           59 EYYDIILTGISVGGEKLPFKISYFT-----KLSTEIDSGNIITRLPSPVYAALRSAFRKRMK--KYKKAKEFEDLLGTCY  131 (213)
Q Consensus        59 ~~y~v~l~~i~vg~~~~~~~~~~~~-----~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~C~  131 (213)
                      .+|+|+|++|+||++.+.++...|.     .+++||||||++++||+++|++|+++|.+++.  .+++.... ..+..||
T Consensus       235 ~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~-~~~~~C~  313 (413)
T 3vla_A          235 VEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASV-APFGACF  313 (413)
T ss_dssp             CSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCC-TTCSCEE
T ss_pred             ceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCC-CCCccee
Confidence            6999999999999999988866553     25899999999999999999999999999875  34433222 3457899


Q ss_pred             cccCCc----ceecCeEEEEEeC-CcEEEEcCCceEEEeCCCceEEEEEecCC-CCCeeEecceeeeeeEEEEeCCCCEE
Q 028157          132 DLSAYE----TVVVPKIAIHFLG-GVDLELDVRGTLVVASVSQVCLEFAIYPP-DLNSITLGNVQQRGHEVHYDVGGRRL  205 (213)
Q Consensus       132 ~~~~~~----~~~~P~l~~~f~~-g~~~~l~~~~y~~~~~~~~~C~~~~~~~~-~~~~~ilG~~~~~~~~~vfD~~~~ri  205 (213)
                      ..+...    +..+|+|+|+|+| +++|+|++++|+++...+..|+++..... ..+.||||+.|||++|+|||++++||
T Consensus       314 ~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~~~~ri  393 (413)
T 3vla_A          314 STDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRV  393 (413)
T ss_dssp             ECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEETTTTEE
T ss_pred             ccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEECCCCEE
Confidence            876432    2579999999985 48999999999998766789999876532 23689999999999999999999999


Q ss_pred             EEeeCC
Q 028157          206 GFGPGN  211 (213)
Q Consensus       206 Gfa~~~  211 (213)
                      |||++.
T Consensus       394 Gfa~~~  399 (413)
T 3vla_A          394 GFSGTL  399 (413)
T ss_dssp             EEEEEG
T ss_pred             EEEEec
Confidence            999863
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 213
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 9e-25
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 7e-17
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 1e-16
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 8e-12
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 1e-11
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 4e-11
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 5e-11
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 6e-11
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 6e-11
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 8e-11
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 1e-10
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 2e-10
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 5e-10
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 5e-09
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 7e-09
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 1e-08
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 2e-08
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 4e-08
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 9e-08
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 5e-07
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 1e-06
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 3e-05
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 97.8 bits (242), Expect = 9e-25
 Identities = 50/230 (21%), Positives = 81/230 (35%), Gaps = 24/230 (10%)

Query: 1   MGLDRSSVSIISKTNTSY-----FSYCLPSPYGSTAYITFGK-PVSVSNKFIKYTPIVTT 54
            GL  S +++ ++  ++      F  CLP+     A    G  P     + + YTP+VT 
Sbjct: 141 AGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTK 200

Query: 55  AEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVYAALRSAFRKRM 114
              S  + I    I VG  ++P            + +      L   VY  L  AF K +
Sbjct: 201 G-GSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKAL 259

Query: 115 KKYK-------KAKEFEDLLGTCYDLSAYE----TVVVPKIAIHFLGGVDLELDVRGTLV 163
                      +A E     G CYD            VP + +   GG D  +  + ++V
Sbjct: 260 AAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMV 319

Query: 164 VASVSQVCLEFA------IYPPDLNSITLGNVQQRGHEVHYDVGGRRLGF 207
                  C+ F              ++ LG  Q     + +D+  +RLGF
Sbjct: 320 DVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGF 369
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Length = 330 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query213
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 99.98
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 99.97
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 99.97
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 99.97
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 99.97
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 99.97
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 99.97
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 99.97
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 99.97
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 99.97
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.96
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 99.96
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 99.96
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 99.96
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 99.96
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.95
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 99.95
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 99.95
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 99.95
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 99.94
d1bxoa_ 323 Acid protease {Fungus (Penicillium janthinellum), 87.73
d1izea_ 323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 84.96
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=100.00  E-value=1.1e-34  Score=243.92  Aligned_cols=209  Identities=23%  Similarity=0.352  Sum_probs=166.8

Q ss_pred             CCCCCCCChhhhhhCcC-----ceEEecCCCCCCccEEEECCCCC-CCCCCeeEeecccCCCCCcceEEEEeEEEECCeE
Q 028157            1 MGLDRSSVSIISKTNTS-----YFSYCLPSPYGSTAYITFGKPVS-VSNKFIKYTPIVTTAEQSEYYDIILTGISVGGEK   74 (213)
Q Consensus         1 ~Glg~~~~sl~~ql~~~-----~FS~cl~~~~~~~g~l~fG~~~~-~~~~~~~y~pl~~~~~~~~~y~v~l~~i~vg~~~   74 (213)
                      +|||+.+.+|++|+.+.     .||+|+.+.....+.+.+|+++. ++.+++.|+|++.+.. ..+|.|.+++|+++++.
T Consensus       141 ~Glg~~~~s~~~ql~~~~~~~~~fsl~l~~~~~~~~~~~~g~~~~~~~~g~~~~~pi~~~~~-~~~~~v~l~~i~v~~~~  219 (381)
T d1t6ex_         141 AGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGG-SPAHYISARSIVVGDTR  219 (381)
T ss_dssp             EECSSSTTSHHHHHHHHHTCCSEEEEECCSSSCEEEEESCCSCSCHHHHTTCCEEECBCCTT-CCSCEECEEEEEETTEE
T ss_pred             eecCCCCcchHHHHhhhcCcceEEEeecCCCcccceEeecccccccccCCceEEEeeeccCC-CceeEEEEEEEeeCCee
Confidence            58999999999998764     29999987654566777777876 6889999999987543 46899999999999999


Q ss_pred             eeccccccCCCcEEEecCCcceecChhHHHHHHHHHHHHhhhccc-------cccccccccccccccCC----cceecCe
Q 028157           75 LPFKISYFTKLSTEIDSGNIITRLPSPVYAALRSAFRKRMKKYKK-------AKEFEDLLGTCYDLSAY----ETVVVPK  143 (213)
Q Consensus        75 ~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~C~~~~~~----~~~~~P~  143 (213)
                      +..+........+|+||||++++||+++|+++.+++.+.......       .......+..||+.+..    ....+|.
T Consensus       220 ~~~~~~~~~~~~~i~DTGtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~  299 (381)
T d1t6ex_         220 VPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPN  299 (381)
T ss_dssp             CCCCTTCSCTTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEECCCC
T ss_pred             eccCcccccCcceEEecCCceEECCHHHHHHHHHHHHHHhcccccccccccccccccCCcceeecccccccccccccccc
Confidence            987655444468999999999999999999999999887653110       00111345678877542    2357899


Q ss_pred             EEEEEeCCcEEEEcCCceEEEeCCCceEEEEEecCC------CCCeeEecceeeeeeEEEEeCCCCEEEEeeC
Q 028157          144 IAIHFLGGVDLELDVRGTLVVASVSQVCLEFAIYPP------DLNSITLGNVQQRGHEVHYDVGGRRLGFGPG  210 (213)
Q Consensus       144 l~~~f~~g~~~~l~~~~y~~~~~~~~~C~~~~~~~~------~~~~~ilG~~~~~~~~~vfD~~~~riGfa~~  210 (213)
                      |+|+|.+|++++++|++|++...++..|+++.....      ....||||+.|||++|+|||++++|||||+.
T Consensus       300 i~~~f~~~~~~~i~~~~y~~~~~~~~~Cl~i~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfA~~  372 (381)
T d1t6ex_         300 VQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRL  372 (381)
T ss_dssp             EEEEETTSCEEEECHHHHEEEEETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred             EEEEEcCCcEEEEChhHeEEEeCCCcEEEEEEecccccCCCCCCCcEEECHHHhCcEEEEEECCCCEEEEEEC
Confidence            999998899999999999998877889998765321      2356999999999999999999999999986
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure