Citrus Sinensis ID: 028178

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MRRRSAQVCLVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAAYGRV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHEEEEEEEEcccccEEEEEEcccccEEEEEEEEEEccccccccccccEEEEEEcccccEEEEEEcccccEEEEEccccccEEEcccccccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccccEEEEEcccccHHEHEEccccccEEEEEEEEEEccccccccccccEEEEEEcccccEEEEEEEccccEEEEEEccccEEEEEEEccccccEEEEEEEEEcccccccHHcHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MRRRSAQVCLVIGFILSFIRHVSTLSITVTDTECVYEHVIYkedtitgnvfvttdhelfwnsdhpgidftvtcpdgsivralkgtsgdkfvfkaprsgmyqfcfhnptstpeevSFYIHIghipnehdlakdehldPIYVRIAELREALETVSAEQRYLKALESRHrstnestrkRVVFYTVSEYLLLAGAGALQVMYIRRLFGktaaygrv
Flexible Loop (DISEMBL)
mrrrsaqvCLVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKAlesrhrstnestrkrvvFYTVSEYLLLAGAGALQVMYIRRLFGKTAAYGRV
Low Complexity Region (SEG)
MRRRSAQVCLVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAAYGRV
Disordered region (IsUnstruct)
******QVCLVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYL***************KRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAAY***
Disordered Region (DISOPRED)
****SAQVCLVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRAL*GTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGHIPNEH*******LDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAA****
Disordered Region (DISEMBL)
MRRRSAQVCLVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALE********STRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAAYGRV
Disordered Region (DISPRO)
*RRRSAQVCLVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTA*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRRRSAQVCLVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVRIAExxxxxxxxxxxxxxxxxxxxxHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAAYGRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q9LIL4	214	Transmembrane emp24 domai	yes	no	0.995	0.985	0.688	1e-85
Q9S7M9	208	Transmembrane emp24 domai	no	no	0.938	0.956	0.312	5e-22
Q769F9	205	Transmembrane emp24 domai	yes	no	0.646	0.668	0.359	7e-18
Q9R0Q3	201	Transmembrane emp24 domai	yes	no	0.806	0.850	0.320	1e-17
Q63524	201	Transmembrane emp24 domai	yes	no	0.806	0.850	0.320	1e-17
Q15363	201	Transmembrane emp24 domai	yes	no	0.806	0.850	0.320	1e-17
P49020	196	Transmembrane emp24 domai	yes	no	0.806	0.872	0.320	2e-17
A7SXK3	203	Transmembrane emp24 domai	N/A	no	0.646	0.674	0.316	8e-16
O17528	203	Suppressor/enhancer of li	yes	no	0.646	0.674	0.321	2e-13
Q9FVU0	212	Transmembrane emp24 domai	no	no	0.882	0.882	0.243	5e-12

>sp|Q9LIL4|P24B3_ARATH Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana GN=At3g22845 PE=2 SV=1

 Score =  315 bits (807), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 148/215 (68%), Positives = 179/215 (83%), Gaps = 4/215 (1%)

Query: 1   MRRRSAQ--VCLVIGFIL-SFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHE 57
           M RR A+  V ++IG IL + I  +S+LS+TV D ECV E+V+Y+ DT++GN FV  DH+
Sbjct: 1   MERRQAKIHVFVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGN-FVVVDHD 59

Query: 58  LFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFY 117
           +FW SDHPG+DFTVT P G+IV+ LKGTSGDKF FKAP+SGMY+FCFHNP STPE VSFY
Sbjct: 60  IFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFY 119

Query: 118 IHIGHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRV 177
           IH+GHIPNEHDLAKDEHLDP+ V+IAELREALE+V AEQ+YLKA ++RHR TNESTRKRV
Sbjct: 120 IHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRV 179

Query: 178 VFYTVSEYLLLAGAGALQVMYIRRLFGKTAAYGRV 212
           +FYTV EY+ LA A  LQV+YIR+LF K+ AY RV
Sbjct: 180 IFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7M9|P24B2_ARATH Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana GN=At3g07680 PE=1 SV=1

 Score =  104 bits (259), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 6/205 (2%)

Query: 10  LVIGFILSFIRHVSTLSI--TVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGI 67
           +++G + SF    +TL I   +   EC      Y+ DT+  + FV    +  W+ +  G+
Sbjct: 8   VLLGLLWSF---QATLGIRFVIDREECFSHKAEYEGDTLHVS-FVVIKSDSQWHFNEDGV 63

Query: 68  DFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGHIPNEH 127
           D  +  P G  +   +     K  F   + G+Y+FCF N +   E + F + +GH     
Sbjct: 64  DLVIHGPTGEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYD 123

Query: 128 DLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLL 187
             AKDEH  P+  +I++L EAL  +  EQ +L+A   R    NE+  KR V   + E   
Sbjct: 124 QHAKDEHFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFA 183

Query: 188 LAGAGALQVMYIRRLFGKTAAYGRV 212
           L GA  LQV  +RRLF +     RV
Sbjct: 184 LIGASFLQVYLLRRLFERKLGMSRV 208

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). Interacts with p24delta5 at endoplasmic reticulum export sites for endoplasmic reticulum exit and coupled transport to the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q769F9|TMEDA_DICDI Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1

 Score = 90.5 bits (223), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 2/139 (1%)

Query: 67  IDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTS--TPEEVSFYIHIGHIP 124
           IDFT+  PD  IV + +  S      ++  +G+Y FCF N  S  T + VSF + +G   
Sbjct: 61  IDFTIISPDKRIVYSGQRESEGTKTLRSSFAGVYSFCFSNKMSSLTDKTVSFILSVGESS 120

Query: 125 NEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSE 184
              ++AK + L PI   I  L + +  V  EQ Y K  E+ HR+T EST  RV++++V E
Sbjct: 121 PIREIAKKKDLTPIERSIMTLSDGVIAVKNEQNYFKMREAAHRNTAESTNSRVLWWSVFE 180

Query: 185 YLLLAGAGALQVMYIRRLF 203
             +L      Q+ Y+RR F
Sbjct: 181 AFVLIALSIWQIYYLRRFF 199

Could have a role in the budding of coatomer-coated and other species of coated vesicles.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9R0Q3|TMED2_MOUSE Transmembrane emp24 domain-containing protein 2 OS=Mus musculus GN=Tmed2 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 83/181 (45%), Gaps = 10/181 (5%)

Query: 25  LSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKG 84
           +SI     EC +E V     T  G +F   +           ID  +T PD   +     
Sbjct: 23  VSIDAHAEECFFERVT--SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDR 74

Query: 85  TSGDKFVFKAPRSGMYQFCFHN--PTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVRI 142
            S  K+ F A   G Y+FCF N   T TP+ V F I IG  P   D+  + H + +   I
Sbjct: 75  ESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMI 134

Query: 143 AELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRL 202
            EL  A+  V  EQ Y++  E  HR+ N++T  RVV ++  E L+L      Q+ Y++R 
Sbjct: 135 NELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRF 194

Query: 203 F 203
           F
Sbjct: 195 F 195

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing (By similarity). Required for morphogenesis of embryo and placenta.

Mus musculus (taxid: 10090)

>sp|Q63524|TMED2_RAT Transmembrane emp24 domain-containing protein 2 OS=Rattus norvegicus GN=Tmed2 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 83/181 (45%), Gaps = 10/181 (5%)

Query: 25  LSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKG 84
           +SI     EC +E V     T  G +F   +           ID  +T PD   +     
Sbjct: 23  VSIDAHAEECFFERVT--SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDR 74

Query: 85  TSGDKFVFKAPRSGMYQFCFHN--PTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVRI 142
            S  K+ F A   G Y+FCF N   T TP+ V F I IG  P   D+  + H + +   I
Sbjct: 75  ESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMI 134

Query: 143 AELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRL 202
            EL  A+  V  EQ Y++  E  HR+ N++T  RVV ++  E L+L      Q+ Y++R 
Sbjct: 135 NELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRF 194

Query: 203 F 203
           F
Sbjct: 195 F 195

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Rattus norvegicus (taxid: 10116)

>sp|Q15363|TMED2_HUMAN Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 83/181 (45%), Gaps = 10/181 (5%)

Query: 25  LSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKG 84
           +SI     EC +E V     T  G +F   +           ID  +T PD   +     
Sbjct: 23  VSIDAHAEECFFERVT--SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDR 74

Query: 85  TSGDKFVFKAPRSGMYQFCFHN--PTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVRI 142
            S  K+ F A   G Y+FCF N   T TP+ V F I IG  P   D+  + H + +   I
Sbjct: 75  ESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMI 134

Query: 143 AELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRL 202
            EL  A+  V  EQ Y++  E  HR+ N++T  RVV ++  E L+L      Q+ Y++R 
Sbjct: 135 NELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRF 194

Query: 203 F 203
           F
Sbjct: 195 F 195

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Homo sapiens (taxid: 9606)

>sp|P49020|TMED2_CRIGR Transmembrane emp24 domain-containing protein 2 (Fragment) OS=Cricetulus griseus GN=TMED2 PE=1 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 83/181 (45%), Gaps = 10/181 (5%)

Query: 25  LSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKG 84
           +SI     EC +E V     T  G +F   +           ID  +T PD   +     
Sbjct: 18  VSIDAHAEECFFERVT--SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDR 69

Query: 85  TSGDKFVFKAPRSGMYQFCFHN--PTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVRI 142
            S  K+ F A   G Y+FCF N   T TP+ V F I IG  P   D+  + H + +   I
Sbjct: 70  ESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMI 129

Query: 143 AELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRL 202
            EL  A+  V  EQ Y++  E  HR+ N++T  RVV ++  E L+L      Q+ Y++R 
Sbjct: 130 NELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRF 189

Query: 203 F 203
           F
Sbjct: 190 F 190

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Cricetulus griseus (taxid: 10029)

>sp|A7SXK3|TMED_NEMVE Transmembrane emp24 domain-containing protein OS=Nematostella vectensis GN=v1g194562 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 2/139 (1%)

Query: 67  IDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTST--PEEVSFYIHIGHIP 124
           ID  +  PD  ++ + +  +  K+ F A   G Y +CF N  ST  P+ + F + IG  P
Sbjct: 59  IDVKIIGPDQKVIYSGERETSGKYTFAAHMDGTYNYCFSNKMSTMTPKVLKFSMDIGEAP 118

Query: 125 NEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSE 184
            +     +   D +   +++L EA+  V  EQ Y++  E  HRS N++T  RVV+++  E
Sbjct: 119 KDTSKEDNAGHDKLSEMVSQLSEAMTGVKHEQEYMEVRERIHRSINDNTNSRVVWWSFFE 178

Query: 185 YLLLAGAGALQVMYIRRLF 203
            L+L      QV Y++R F
Sbjct: 179 SLVLVAMTLGQVYYLKRFF 197

Could have a role in the budding of coatomer-coated and other species of coated vesicles.

Nematostella vectensis (taxid: 45351)

>sp|O17528|TMED2_CAEEL Suppressor/enhancer of lin-12 protein 9 OS=Caenorhabditis elegans GN=sel-9 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 67  IDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTST--PEEVSFYIHI---- 120
           ID  +T PD   +   +  S  KF F A   G+Y +CF N  ST  P+ V F + I    
Sbjct: 55  IDVKITGPDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEITEPH 114

Query: 121 GHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFY 180
              P             +   + EL  AL +V  EQ Y++  E  HR+ NE+T  RVV +
Sbjct: 115 QQAPGAAANQDAADNAKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMW 174

Query: 181 TVSEYLLLAGAGALQVMYIRRLF 203
              E  +L G    Q+ Y++R F
Sbjct: 175 AAFEAFVLVGMTVGQIFYLKRFF 197

May have a role in the negative regulation of lin-12 and glp-1 transport to the cell surface. May also have a role in a quality control mechanism for endoplasmic reticulum-Golgi transport; the budding of coatomer-coated and other species of coated vesicles, could bind cargo molecules to collect them into budding vesicles.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9FVU0|P24D4_ARATH Transmembrane emp24 domain-containing protein p24delta4 OS=Arabidopsis thaliana GN=At1g57620 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 10/197 (5%)

Query: 14  FILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTC 73
           F LS I     L++  T ++CV E +      +   + ++ +H +F     P +   VT 
Sbjct: 17  FSLSPICEAVWLTVPHTGSKCVSEEIQSNVIVLADYLVISEEHSIF-----PTVSVKVTA 71

Query: 74  PDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHI----GHIPNEHD- 128
           P G+++   + T+  +F F    SG Y  CF     +     F I+I    G    + D 
Sbjct: 72  PYGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDWKTGIAAKDWDS 131

Query: 129 LAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLL 188
           +A+ E ++ + +   +L  A+E +     YL+  E+  R  +E T  RV +Y++    + 
Sbjct: 132 IARKEKIEGVELEFKKLEGAVEAIHENLIYLRNREAEMRIVSEKTNSRVAWYSIMSLGIC 191

Query: 189 AGAGALQVMYIRRLFGK 205
                LQ++Y+++ F K
Sbjct: 192 IVVSGLQILYLKQYFEK 208

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
42565125	214	emp24/gp25L/p24 family/GOLD domain-conta	0.995	0.985	0.688	7e-84
297830996	214	hypothetical protein ARALYDRAFT_479795 [	0.995	0.985	0.688	1e-83
224111104	211	predicted protein [Populus trichocarpa]	0.995	1.0	0.674	2e-82
351727807	210	uncharacterized protein LOC100306668 pre	0.981	0.990	0.695	4e-82
225432800	215	PREDICTED: transmembrane emp24 domain-co	0.995	0.981	0.680	6e-82
351727050	210	uncharacterized protein LOC100499675 pre	0.981	0.990	0.685	2e-81
388497880	215	unknown [Lotus japonicus]	0.952	0.939	0.679	4e-80
255552039	210	coated vesicle membrane protein, putativ	0.990	1.0	0.660	3e-79
449432664	215	PREDICTED: transmembrane emp24 domain-co	0.919	0.906	0.698	2e-78
225437160	210	PREDICTED: transmembrane emp24 domain-co	0.943	0.952	0.676	2e-77

>gi|42565125|ref|NP_188924.3| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana] gi|75273406|sp|Q9LIL4.1|P24B3_ARATH RecName: Full=Transmembrane emp24 domain-containing protein p24beta3; AltName: Full=p24 family protein beta2; Short=p24beta2; AltName: Full=p24 family protein beta3; Short=p24beta3; Flags: Precursor gi|11994713|dbj|BAB03029.1| coated vesicle membrane protein-like [Arabidopsis thaliana] gi|17979492|gb|AAL50082.1| AT3g22845/MWI23_22 [Arabidopsis thaliana] gi|20147305|gb|AAM10366.1| AT3g22845/MWI23_22 [Arabidopsis thaliana] gi|332643162|gb|AEE76683.1| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana]

 Score =  315 bits (807), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 148/215 (68%), Positives = 179/215 (83%), Gaps = 4/215 (1%)

Query: 1   MRRRSAQ--VCLVIGFIL-SFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHE 57
           M RR A+  V ++IG IL + I  +S+LS+TV D ECV E+V+Y+ DT++GN FV  DH+
Sbjct: 1   MERRQAKIHVFVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGN-FVVVDHD 59

Query: 58  LFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFY 117
           +FW SDHPG+DFTVT P G+IV+ LKGTSGDKF FKAP+SGMY+FCFHNP STPE VSFY
Sbjct: 60  IFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFY 119

Query: 118 IHIGHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRV 177
           IH+GHIPNEHDLAKDEHLDP+ V+IAELREALE+V AEQ+YLKA ++RHR TNESTRKRV
Sbjct: 120 IHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRV 179

Query: 178 VFYTVSEYLLLAGAGALQVMYIRRLFGKTAAYGRV 212
           +FYTV EY+ LA A  LQV+YIR+LF K+ AY RV
Sbjct: 180 IFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830996|ref|XP_002883380.1| hypothetical protein ARALYDRAFT_479795 [Arabidopsis lyrata subsp. lyrata] gi|297329220|gb|EFH59639.1| hypothetical protein ARALYDRAFT_479795 [Arabidopsis lyrata subsp. lyrata]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 148/215 (68%), Positives = 178/215 (82%), Gaps = 4/215 (1%)

Query: 1   MRRRSAQ--VCLVIGFIL-SFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHE 57
           M RR A+  V ++IG IL + I  +S+LS+TV D ECV E+V+Y+ DT++GN FV  DH+
Sbjct: 1   MERRQAKIHVFVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGN-FVVVDHD 59

Query: 58  LFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFY 117
           +FW SDHPG+DFTVT P G+IV+ LKGTSGDKF FKAPRSGMY+FCFHNP STPE VSFY
Sbjct: 60  IFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 119

Query: 118 IHIGHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRV 177
           IH+GHIPNEHDLAKDEHLDP+ V+IAELREALE+V AEQ+YLKA ++RHR TNESTRKRV
Sbjct: 120 IHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRV 179

Query: 178 VFYTVSEYLLLAGAGALQVMYIRRLFGKTAAYGRV 212
           + YTV EY+ LA A  LQV+YIR+LF K+ AY RV
Sbjct: 180 ILYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111104|ref|XP_002315749.1| predicted protein [Populus trichocarpa] gi|222864789|gb|EEF01920.1| predicted protein [Populus trichocarpa]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 143/212 (67%), Positives = 173/212 (81%), Gaps = 1/212 (0%)

Query: 1   MRRRSAQVCLVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFW 60
           M RR  Q+ +V   ++SFI  + +LS+TV D ECVYE+V+Y+ DT++GN FV  DH++FW
Sbjct: 1   MERRRKQIYVVAALLMSFISRIYSLSVTVNDVECVYEYVLYEGDTVSGN-FVVVDHDIFW 59

Query: 61  NSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHI 120
            SDHPGIDFT T P  + V  +KGTSGDKF FKAPRSGMY+FCFHNP +TPE VSFYIH+
Sbjct: 60  GSDHPGIDFTATSPGDNTVHTVKGTSGDKFEFKAPRSGMYKFCFHNPYATPETVSFYIHV 119

Query: 121 GHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFY 180
           GHIP+EHDLAKDEHL+P+ V+IAELREALE+V+AEQRYLKA + RHR TNESTR+RV+ Y
Sbjct: 120 GHIPSEHDLAKDEHLNPVNVKIAELREALESVTAEQRYLKARDIRHRHTNESTRRRVIAY 179

Query: 181 TVSEYLLLAGAGALQVMYIRRLFGKTAAYGRV 212
           TV EYLLLA A  LQV+YIRRLF K+ AY RV
Sbjct: 180 TVGEYLLLAAASTLQVVYIRRLFSKSVAYNRV 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727807|ref|NP_001238453.1| uncharacterized protein LOC100306668 precursor [Glycine max] gi|255629227|gb|ACU14958.1| unknown [Glycine max]

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 146/210 (69%), Positives = 174/210 (82%), Gaps = 2/210 (0%)

Query: 4   RSAQVCLVI-GFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNS 62
           RSA++  V+   ++SF   + +LS+TV D ECVYE+V+Y+ DT++GN FV  DH++FWNS
Sbjct: 2   RSAKMWTVLMCLMVSFFARIESLSVTVNDVECVYEYVLYEGDTVSGN-FVVVDHDIFWNS 60

Query: 63  DHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGH 122
           DHPGIDFTVT   G+ V  +KGTSGDKF FKAP  GMY+FCFHNP STPE VSFYIH+GH
Sbjct: 61  DHPGIDFTVTSAAGNTVHNIKGTSGDKFSFKAPTHGMYKFCFHNPYSTPETVSFYIHVGH 120

Query: 123 IPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTV 182
           IP+EHDLAKDEHLDPI V+IAELREALE+V+AEQ+YLKA ++RHR TNESTRKRVVFYTV
Sbjct: 121 IPSEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRVVFYTV 180

Query: 183 SEYLLLAGAGALQVMYIRRLFGKTAAYGRV 212
            EYLLLA   ALQV+YIRRLF K+ AY RV
Sbjct: 181 GEYLLLAAVSALQVIYIRRLFSKSVAYNRV 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432800|ref|XP_002283487.1| PREDICTED: transmembrane emp24 domain-containing protein A [Vitis vinifera] gi|297737114|emb|CBI26315.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 147/216 (68%), Positives = 172/216 (79%), Gaps = 5/216 (2%)

Query: 1   MRRRSAQVC----LVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDH 56
           M RR    C    + I    SFI  +S LS+TV + ECVYE+VIY+ DT++GN FV  DH
Sbjct: 1   MERRHTHRCATGFIFIALFFSFIHRISALSVTVNEVECVYEYVIYEGDTVSGN-FVVVDH 59

Query: 57  ELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSF 116
           ++FW SDHPGIDFTVT P G+ V  LKGTSGDKF FKAPRSGMY+FCF N  +TPE VSF
Sbjct: 60  DIFWGSDHPGIDFTVTSPAGNTVHTLKGTSGDKFEFKAPRSGMYKFCFQNSYATPETVSF 119

Query: 117 YIHIGHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKR 176
           YIH+GHIPNEH+LAKDEHLDPI V+IAELREALE+V+AEQ+YLKA ++RHR TNESTRKR
Sbjct: 120 YIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVTAEQKYLKARDTRHRHTNESTRKR 179

Query: 177 VVFYTVSEYLLLAGAGALQVMYIRRLFGKTAAYGRV 212
           V+FYT+ EYLLLA A  LQV+YIRRLF K+ AY RV
Sbjct: 180 VIFYTLGEYLLLALASGLQVVYIRRLFSKSVAYNRV 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727050|ref|NP_001238171.1| uncharacterized protein LOC100499675 precursor [Glycine max] gi|255625697|gb|ACU13193.1| unknown [Glycine max]

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 144/210 (68%), Positives = 175/210 (83%), Gaps = 2/210 (0%)

Query: 4   RSAQVCLV-IGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNS 62
           RS+++ +V +   +SF   + +LS+TV D ECVYE+V+Y+ DT++GN FV  DH++FW+S
Sbjct: 2   RSSKMWMVFMCLTVSFFARIESLSVTVNDVECVYEYVLYEGDTVSGN-FVVVDHDIFWSS 60

Query: 63  DHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGH 122
           DHPGIDFTVT   G+ V ++KGTSGDKF FKAP  GMY+FCFHNP STPE VSFYIH+GH
Sbjct: 61  DHPGIDFTVTTAAGNTVHSIKGTSGDKFSFKAPSHGMYKFCFHNPYSTPETVSFYIHVGH 120

Query: 123 IPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTV 182
           IP+EHDLAKDEHLDPI V+IAELREALE+V+AEQ+YLKA ++RHR TNESTRKRVVFYTV
Sbjct: 121 IPSEHDLAKDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRVVFYTV 180

Query: 183 SEYLLLAGAGALQVMYIRRLFGKTAAYGRV 212
            EYLLLA   ALQV+YIRRLF K+ AY RV
Sbjct: 181 GEYLLLAAVSALQVIYIRRLFSKSVAYNRV 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497880|gb|AFK37006.1| unknown [Lotus japonicus]

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 138/203 (67%), Positives = 169/203 (83%), Gaps = 1/203 (0%)

Query: 10  LVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDF 69
           +++  +LSF+  + +LS+TV + EC+YE+V+Y+ DT++GN FV  DH++FW SDHPGID 
Sbjct: 14  VLMCLMLSFVARIESLSVTVHEVECIYEYVLYEGDTVSGN-FVVVDHDIFWGSDHPGIDL 72

Query: 70  TVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGHIPNEHDL 129
           TVT P G+ V  +KGTSGDKF FKAP SGMY+FCFHNP STPE VSFYIH+GHIPNEH+L
Sbjct: 73  TVTSPAGNTVHDIKGTSGDKFQFKAPASGMYKFCFHNPYSTPETVSFYIHVGHIPNEHNL 132

Query: 130 AKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLA 189
           AKDEHLDPI V+IAELREALE+V+AEQ+YLKA ++RHR TNESTR RV+FYTV EYLLLA
Sbjct: 133 AKDEHLDPINVKIAELREALESVTAEQKYLKARDTRHRHTNESTRSRVIFYTVGEYLLLA 192

Query: 190 GAGALQVMYIRRLFGKTAAYGRV 212
               LQV+YIRRLF K+ AY RV
Sbjct: 193 AVSTLQVIYIRRLFSKSVAYNRV 215

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552039|ref|XP_002517064.1| coated vesicle membrane protein, putative [Ricinus communis] gi|223543699|gb|EEF45227.1| coated vesicle membrane protein, putative [Ricinus communis]

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 140/212 (66%), Positives = 172/212 (81%), Gaps = 2/212 (0%)

Query: 1   MRRRSAQVCLVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFW 60
           M RR   V  ++  +++ I  +S+LS+TV D ECVYE+V+Y+ DT++GN FV  DH++FW
Sbjct: 1   MTRRQIYVVGIL-LLMNLIGRISSLSVTVNDVECVYEYVLYEGDTVSGN-FVVVDHDIFW 58

Query: 61  NSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHI 120
           +SDHPGID TVT P  ++V  +KGTSGDKF FKAPRSGMY+FCFHNP STPE VSFYIH+
Sbjct: 59  SSDHPGIDLTVTSPADNVVHTVKGTSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFYIHV 118

Query: 121 GHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFY 180
           GHIPN HDLAKDEHL+PI V+IAELREALE+V+AEQ+YLKA ++RHR TNESTRKRV+ Y
Sbjct: 119 GHIPNAHDLAKDEHLNPINVKIAELREALESVTAEQKYLKARDARHRRTNESTRKRVIGY 178

Query: 181 TVSEYLLLAGAGALQVMYIRRLFGKTAAYGRV 212
           TV EY+LL     LQV+YIRRLF K+ AY RV
Sbjct: 179 TVGEYILLGLVSTLQVVYIRRLFSKSVAYNRV 210

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432664|ref|XP_004134119.1| PREDICTED: transmembrane emp24 domain-containing protein p24beta3-like [Cucumis sativus] gi|449504149|ref|XP_004162266.1| PREDICTED: transmembrane emp24 domain-containing protein p24beta3-like [Cucumis sativus]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/196 (69%), Positives = 166/196 (84%), Gaps = 1/196 (0%)

Query: 17  SFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDG 76
           S I  + ++S+TV + ECVYE+V+Y+ D+++GN FV  DH++FW +DHPGI+FTVT P G
Sbjct: 21  SLIAGIDSISVTVNEVECVYEYVLYEGDSVSGN-FVVVDHDIFWGADHPGIEFTVTSPAG 79

Query: 77  SIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGHIPNEHDLAKDEHLD 136
           ++V +LK TSGDKF FKAPRSGMY+FCFHNP STPE VSFYIH+GHIPNEHD AKDEHLD
Sbjct: 80  NVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFYIHVGHIPNEHDHAKDEHLD 139

Query: 137 PIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQV 196
           PI V+IAELREALE+V +EQ+YLKA ++RHR TNESTRKRV+FYTV EYLLLA A  LQV
Sbjct: 140 PINVKIAELREALESVISEQKYLKARDARHRHTNESTRKRVIFYTVGEYLLLAVASGLQV 199

Query: 197 MYIRRLFGKTAAYGRV 212
           +YIRRLF K+ AY RV
Sbjct: 200 IYIRRLFSKSVAYNRV 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437160|ref|XP_002274733.1| PREDICTED: transmembrane emp24 domain-containing protein 2 [Vitis vinifera]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/201 (67%), Positives = 169/201 (84%), Gaps = 1/201 (0%)

Query: 12  IGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTV 71
           +GF+LSF     +LSITV++ ECV E V ++ DT++G  FV  DH++FWNSDHPGI+FTV
Sbjct: 11  LGFVLSFFSRGCSLSITVSNMECVSEAVHFEGDTVSG-YFVVIDHDIFWNSDHPGIEFTV 69

Query: 72  TCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGHIPNEHDLAK 131
           T P G+IV ALKGTSG+KF FKAP+SG Y+FCF+NP +TPE VSFYIH+GHIPNE+DLAK
Sbjct: 70  TSPGGAIVHALKGTSGEKFEFKAPQSGTYKFCFNNPVATPETVSFYIHVGHIPNEYDLAK 129

Query: 132 DEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGA 191
           DEHLDP+ VRI ELREAL +V+AEQ+YLKA ++RHR+TNESTR+RVVFYT++EY+LLA  
Sbjct: 130 DEHLDPVNVRITELREALLSVAAEQKYLKARDARHRATNESTRRRVVFYTLAEYILLAAT 189

Query: 192 GALQVMYIRRLFGKTAAYGRV 212
             LQV+YIRRLF K+ AY RV
Sbjct: 190 SGLQVVYIRRLFSKSVAYNRV 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:2094364	214	AT3G22845 [Arabidopsis thalian	0.995	0.985	0.688	1.1e-78
TAIR|locus:2091107	208	p24beta2 "p24 subfamily beta 2	0.938	0.956	0.321	1e-22
ASPGD|ASPL0000053579	202	AN1154 [Emericella nidulans (t	0.910	0.955	0.320	9.2e-20
UNIPROTKB|Q15363	201	TMED2 "Transmembrane emp24 dom	0.886	0.935	0.308	2.8e-18
UNIPROTKB|C3V9V7	201	TMED2 "RNP24" [Bos taurus (tax	0.801	0.845	0.329	3.6e-18
UNIPROTKB|E2RGZ5	201	TMED2 "Uncharacterized protein	0.801	0.845	0.329	3.6e-18
UNIPROTKB|F2Z501	201	TMED2 "Uncharacterized protein	0.801	0.845	0.329	3.6e-18
UNIPROTKB|P49020	196	TMED2 "Transmembrane emp24 dom	0.801	0.867	0.329	3.6e-18
RGD|69243	201	Tmed2 "transmembrane emp24 dom	0.801	0.845	0.329	3.6e-18
FB|FBgn0029709	208	CHOp24 "CHOp24" [Drosophila me	0.919	0.937	0.314	4.6e-18

TAIR|locus:2094364 AT3G22845 [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 148/215 (68%), Positives = 179/215 (83%)

Query:     1 MRRRSAQ--VCLVIGFIL-SFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHE 57
             M RR A+  V ++IG IL + I  +S+LS+TV D ECV E+V+Y+ DT++GN FV  DH+
Sbjct:     1 MERRQAKIHVFVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGN-FVVVDHD 59

Query:    58 LFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFY 117
             +FW SDHPG+DFTVT P G+IV+ LKGTSGDKF FKAP+SGMY+FCFHNP STPE VSFY
Sbjct:    60 IFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFY 119

Query:   118 IHIGHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRV 177
             IH+GHIPNEHDLAKDEHLDP+ V+IAELREALE+V AEQ+YLKA ++RHR TNESTRKRV
Sbjct:   120 IHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRV 179

Query:   178 VFYTVSEYLLLAGAGALQVMYIRRLFGKTAAYGRV 212
             +FYTV EY+ LA A  LQV+YIR+LF K+ AY RV
Sbjct:   180 IFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2091107 p24beta2 "p24 subfamily beta 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 66/205 (32%), Positives = 100/205 (48%)

Query:    10 LVIGFILSFIRHVSTLSIT-VTDTECVYEHVI-YKEDTITGNVFVTTDHELFWNSDHPGI 67
             +++G + SF    +TL I  V D E  + H   Y+ DT+  + FV    +  W+ +  G+
Sbjct:     8 VLLGLLWSF---QATLGIRFVIDREECFSHKAEYEGDTLHVS-FVVIKSDSQWHFNEDGV 63

Query:    68 DFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTSTPEEVSFYIHIGHIPNEH 127
             D  +  P G  +   +     K  F   + G+Y+FCF N +   E + F + +GH     
Sbjct:    64 DLVIHGPTGEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYD 123

Query:   128 DLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLL 187
               AKDEH  P+  +I++L EAL  +  EQ +L+A   R    NE+  KR V   + E   
Sbjct:   124 QHAKDEHFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFA 183

Query:   188 LAGAGALQVMYIRRLFGKTAAYGRV 212
             L GA  LQV  +RRLF +     RV
Sbjct:   184 LIGASFLQVYLLRRLFERKLGMSRV 208

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030134 "ER to Golgi transport vesicle" evidence=IDA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

ASPGD|ASPL0000053579 AN1154 [Emericella nidulans (taxid:162425)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 66/206 (32%), Positives = 105/206 (50%)

Query:     1 MRRRSAQVCLVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFW 60
             MR  +A + L + +I +   H   + +     EC +E  ++K+D +T + F   D E F 
Sbjct:     1 MRFSAASLLLGLSWITAAAAH--NIQLRAHSRECFHE-TLHKDDKMTVS-FQVGDRE-FG 55

Query:    61 NSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNP--TSTPEEVSFYI 118
              S +  IDF V  P  +     +  S + + F A   G Y +CF N   TS  +EVSF +
Sbjct:    56 GSGNLEIDFWVEDPQSNRQYYKQAISSEDYSFTAQLDGKYVYCFSNEGWTSNSKEVSFNV 115

Query:   119 H-IGHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRV 177
             H I ++P E ++A+D    P+   +  L E L  V  EQ Y+   E  HR+T EST  RV
Sbjct:   116 HGIVYVP-ESEMAQD----PLETEVRRLLENLAQVKDEQSYIVVRERVHRNTAESTNARV 170

Query:   178 VFYTVSEYLLLAGAGALQVMYIRRLF 203
              ++++ +  +L G G  QV +++R F
Sbjct:   171 KWWSIFQLAVLIGEGIFQVWWLKRFF 196

GO:0003674 "molecular_function" evidence=ND

GO:0016050 "vesicle organization" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006621 "protein retention in ER lumen" evidence=IEA

GO:0030134 "ER to Golgi transport vesicle" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q15363 TMED2 "Transmembrane emp24 domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 62/201 (30%), Positives = 97/201 (48%)

Query:     6 AQVCLVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHP 65
             A++ +++  +L+ +     +SI     EC +E V     T  G +F   +          
Sbjct:     5 AELLVLLAALLATVSGYF-VSIDAHAEECFFERVT--SGTKMGLIFEVAEGGFL------ 55

Query:    66 GIDFTVTCPDGS-IVRALKGTSGDKFVFKAPRSGMYQFCFHN--PTSTPEEVSFYIHIGH 122
              ID  +T PD   I +  + +SG K+ F A   G Y+FCF N   T TP+ V F I IG 
Sbjct:    56 DIDVEITGPDNKGIYKGDRESSG-KYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGE 114

Query:   123 IPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTV 182
              P   D+  + H + +   I EL  A+  V  EQ Y++  E  HR+ N++T  RVV ++ 
Sbjct:   115 APKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSF 174

Query:   183 SEYLLLAGAGALQVMYIRRLF 203
              E L+L      Q+ Y++R F
Sbjct:   175 FEALVLVAMTLGQIYYLKRFF 195

GO:0001843 "neural tube closure" evidence=IEA

GO:0001892 "embryonic placenta development" evidence=IEA

GO:0001893 "maternal placenta development" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0032525 "somite rostral/caudal axis specification" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0036342 "post-anal tail morphogenesis" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0034260 "negative regulation of GTPase activity" evidence=IDA

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

GO:0007030 "Golgi organization" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IDA

GO:0030137 "COPI-coated vesicle" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=IDA

GO:0035459 "cargo loading into vesicle" evidence=TAS

GO:0048208 "COPII vesicle coating" evidence=TAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042589 "zymogen granule membrane" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|C3V9V7 TMED2 "RNP24" [Bos taurus (taxid:9913)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 60/182 (32%), Positives = 87/182 (47%)

Query:    25 LSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGS-IVRALK 83
             +SI     EC +E V     T  G +F   +           ID  +T PD   I +  +
Sbjct:    23 VSIDAHAEECFFERVT--SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDR 74

Query:    84 GTSGDKFVFKAPRSGMYQFCFHN--PTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVR 141
              +SG K+ F A   G Y+FCF N   T TP+ V F I IG  P   D+  + H + +   
Sbjct:    75 ESSG-KYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEM 133

Query:   142 IAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRR 201
             I EL  A+  V  EQ Y++  E  HR+ N++T  RVV ++  E L+L      Q+ Y++R
Sbjct:   134 INELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKR 193

Query:   202 LF 203
              F
Sbjct:   194 FF 195

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|E2RGZ5 TMED2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 60/182 (32%), Positives = 87/182 (47%)

Query:    25 LSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGS-IVRALK 83
             +SI     EC +E V     T  G +F   +           ID  +T PD   I +  +
Sbjct:    23 VSIDAHAEECFFERVT--SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDR 74

Query:    84 GTSGDKFVFKAPRSGMYQFCFHN--PTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVR 141
              +SG K+ F A   G Y+FCF N   T TP+ V F I IG  P   D+  + H + +   
Sbjct:    75 ESSG-KYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEM 133

Query:   142 IAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRR 201
             I EL  A+  V  EQ Y++  E  HR+ N++T  RVV ++  E L+L      Q+ Y++R
Sbjct:   134 INELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKR 193

Query:   202 LF 203
              F
Sbjct:   194 FF 195

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F2Z501 TMED2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 60/182 (32%), Positives = 87/182 (47%)

Query:    25 LSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGS-IVRALK 83
             +SI     EC +E V     T  G +F   +           ID  +T PD   I +  +
Sbjct:    23 VSIDAHAEECFFERVT--SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDR 74

Query:    84 GTSGDKFVFKAPRSGMYQFCFHN--PTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVR 141
              +SG K+ F A   G Y+FCF N   T TP+ V F I IG  P   D+  + H + +   
Sbjct:    75 ESSG-KYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEM 133

Query:   142 IAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRR 201
             I EL  A+  V  EQ Y++  E  HR+ N++T  RVV ++  E L+L      Q+ Y++R
Sbjct:   134 INELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKR 193

Query:   202 LF 203
              F
Sbjct:   194 FF 195

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0036342 "post-anal tail morphogenesis" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0032525 "somite rostral/caudal axis specification" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001893 "maternal placenta development" evidence=IEA

GO:0001892 "embryonic placenta development" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P49020 TMED2 "Transmembrane emp24 domain-containing protein 2" [Cricetulus griseus (taxid:10029)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 60/182 (32%), Positives = 87/182 (47%)

Query:    25 LSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGS-IVRALK 83
             +SI     EC +E V     T  G +F   +           ID  +T PD   I +  +
Sbjct:    18 VSIDAHAEECFFERVT--SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDR 69

Query:    84 GTSGDKFVFKAPRSGMYQFCFHN--PTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVR 141
              +SG K+ F A   G Y+FCF N   T TP+ V F I IG  P   D+  + H + +   
Sbjct:    70 ESSG-KYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEM 128

Query:   142 IAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRR 201
             I EL  A+  V  EQ Y++  E  HR+ N++T  RVV ++  E L+L      Q+ Y++R
Sbjct:   129 INELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKR 188

Query:   202 LF 203
              F
Sbjct:   189 FF 190

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0007030 "Golgi organization" evidence=ISS

GO:0030137 "COPI-coated vesicle" evidence=IDA

GO:0034260 "negative regulation of GTPase activity" evidence=ISS

GO:0072661 "protein targeting to plasma membrane" evidence=ISS

RGD|69243 Tmed2 "transmembrane emp24 domain trafficking protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 60/182 (32%), Positives = 87/182 (47%)

Query:    25 LSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGS-IVRALK 83
             +SI     EC +E V     T  G +F   +           ID  +T PD   I +  +
Sbjct:    23 VSIDAHAEECFFERVT--SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDR 74

Query:    84 GTSGDKFVFKAPRSGMYQFCFHN--PTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVR 141
              +SG K+ F A   G Y+FCF N   T TP+ V F I IG  P   D+  + H + +   
Sbjct:    75 ESSG-KYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEM 133

Query:   142 IAELREALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRR 201
             I EL  A+  V  EQ Y++  E  HR+ N++T  RVV ++  E L+L      Q+ Y++R
Sbjct:   134 INELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKR 193

Query:   202 LF 203
              F
Sbjct:   194 FF 195

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001756 "somitogenesis" evidence=ISO

GO:0001843 "neural tube closure" evidence=IEA;ISO

GO:0001892 "embryonic placenta development" evidence=IEA;ISO

GO:0001893 "maternal placenta development" evidence=IEA

GO:0001947 "heart looping" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=ISO;ISS

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISO;NAS

GO:0006903 "vesicle targeting" evidence=NAS

GO:0007030 "Golgi organization" evidence=ISO;ISS

GO:0010628 "positive regulation of gene expression" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA;IDA

GO:0030137 "COPI-coated vesicle" evidence=ISS;IDA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0032525 "somite rostral/caudal axis specification" evidence=IEA;ISO

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=ISO;ISS

GO:0035264 "multicellular organism growth" evidence=IEA;ISO

GO:0036342 "post-anal tail morphogenesis" evidence=IEA;ISO

GO:0042589 "zymogen granule membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO;ISS

FB|FBgn0029709 CHOp24 "CHOp24" [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 66/210 (31%), Positives = 98/210 (46%)

Query:     1 MRRRSAQVCLVIGFILSFIR--HVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHEL 58
             M    A+V L++G +L   R  H   +S+   + EC +E+V  +  T  G  F   D   
Sbjct:     1 MESTLAKVLLLVGSLLILCRTSHAFIVSVDAHNEECFFENV--EGGTKFGVTFEVIDGGF 58

Query:    59 FWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTS--TPEEVSF 116
                 D   +D  ++ PD  ++   +  S  K+ F AP  G Y  CF+N  S  TP+ V F
Sbjct:    59 L---D---VDIKISGPDNHVMHESEKESSGKYTFVAPAKGTYTVCFNNERSSMTPKLVMF 112

Query:   117 YIHIGHIPNEHDLAK-DEHLDPIYVR--IAELREALETVSAEQRYLKALESRHRSTNEST 173
              I +G  P     A  +E +    +   I EL   L +V  EQ Y+   +  HRS NE+T
Sbjct:   113 SIDVGDAPQRAPGAPGEEEVGHTKLEDMIRELSGTLTSVKHEQEYMHVRDKIHRSVNENT 172

Query:   174 RKRVVFYTVSEYLLLAGAGALQVMYIRRLF 203
               RVV ++  E L+L      QV Y++R F
Sbjct:   173 NSRVVLWSTFEALVLVLMTVGQVYYLKRFF 202

GO:0030126 "COPI vesicle coat" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035220 "wing disc development" evidence=IMP

GO:0070863 "positive regulation of protein exit from endoplasmic reticulum" evidence=IMP

GO:0061357 "positive regulation of Wnt protein secretion" evidence=IMP

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0048042 "regulation of post-mating oviposition" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49020	TMED2_CRIGR	No assigned EC number	0.3204	0.8066	0.8724	yes	no
Q15363	TMED2_HUMAN	No assigned EC number	0.3204	0.8066	0.8507	yes	no
Q63524	TMED2_RAT	No assigned EC number	0.3204	0.8066	0.8507	yes	no
Q9LIL4	P24B3_ARATH	No assigned EC number	0.6883	0.9952	0.9859	yes	no
Q9R0Q3	TMED2_MOUSE	No assigned EC number	0.3204	0.8066	0.8507	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G22845	emp24/gp25L/p24 protein-related; emp24/gp25L/p24 protein-related; INVOLVED IN- transport; LOCATED IN- vacuole; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- GOLD (InterPro-IPR009038), emp24/gp25L/p24 (InterPro-IPR000348); BEST Arabidopsis thaliana protein match is- emp24/gp25L/p24 family protein (TAIR-AT3G07680.1); Has 1355 Blast hits to 1355 proteins in 178 species- Archae - 0; Bacteria - 0; Metazoa - 771; Fungi - 319; Plants - 146; Viruses - 0; Other Eukaryotes - 119 (source- NCBI BLink). (214 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G42960	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (213 aa)							•		0.621
	AT5G08540	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (346 aa)							•		0.621
	AT1G26160	metal-dependent phosphohydrolase HD domain-containing protein; metal-dependent phosphohydrolase [...] (258 aa)							•		0.621
	AT1G03030	phosphoribulokinase/uridine kinase family protein; phosphoribulokinase/uridine kinase family pr [...] (301 aa)							•		0.621
	AT3G55760	unknown protein; unknown protein; LOCATED IN- chloroplast stroma, chloroplast; EXPRESSED IN- 16 [...] (578 aa)							•		0.599
	AT5G26990	drought-responsive family protein; drought-responsive family protein; INVOLVED IN- response to [...] (222 aa)				•			•		0.593
	IMPL1	IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1); 3'(2'),5'-bisphosphate nucleotidase/ inositol or p [...] (371 aa)							•		0.563
	AT2G34460	flavin reductase-related; flavin reductase-related; FUNCTIONS IN- coenzyme binding, binding, ca [...] (280 aa)							•		0.562
	AT1G69460	emp24/gp25L/p24 family protein; emp24/gp25L/p24 family protein; FUNCTIONS IN- protein transmemb [...] (214 aa)				•	•		•	•	0.555
	AT3G03160	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (130 aa)				•					0.514

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	2e-45

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score =  148 bits (376), Expect = 2e-45
 Identities = 71/177 (40%), Positives = 97/177 (54%), Gaps = 15/177 (8%)

Query: 32  TECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGS---IVRALKGTSGD 88
            EC YE  + K   +TG+  V        +  +  IDFT+T PDG+   I       SG 
Sbjct: 11  KECFYEE-VPKGTLVTGSYQVI-------SGGNLDIDFTITDPDGNGNVIYSKEDRKSGG 62

Query: 89  KFVFKAPRSGMYQFCFHNPTSTPEE--VSFYIHIGHIPNEHDLAKDEHLDPIYVRIAELR 146
           KF F A  SG Y+FCF N  ST     VSF I +G      D+AK E LDP+   + +L 
Sbjct: 63  KFSFTATESGEYKFCFSNSFSTFSSKTVSFDIKVGEEAK--DIAKKEKLDPLEEELKKLE 120

Query: 147 EALETVSAEQRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLF 203
           + L  +  EQ+YL+  E+RHR TNEST  RVV++++ + L+L G   LQV Y++R F
Sbjct: 121 DQLNDIKREQKYLREREARHRETNESTNSRVVWWSIIQILVLIGVSVLQVYYLKRFF 177

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
KOG1692	201	consensus Putative cargo transport protein EMP24 (	100.0
KOG1690	215	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1691	210	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1693	209	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG3287	236	consensus Membrane trafficking protein, emp24/gp25	100.0
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	100.0
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	94.86
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	92.53
PF04151	70	PPC: Bacterial pre-peptidase C-terminal domain; In	91.23
PF13897	136	GOLD_2: Golgi-dynamics membrane-trafficking	90.07
PF00630	101	Filamin: Filamin/ABP280 repeat; InterPro: IPR01786	87.86
PF05753	181	TRAP_beta: Translocon-associated protein beta (TRA	85.03
PF05738	70	Cna_B: Cna protein B-type domain; InterPro: IPR008	84.16
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	84.0
PF13620	82	CarboxypepD_reg: Carboxypeptidase regulatory-like	83.11

>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-49  Score=296.87  Aligned_cols=191  Identities=39%  Similarity=0.638  Sum_probs=177.8

Q ss_pred             HHHHHHHHHhhcceEEEEEeCCcceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeecccCCE
Q 028178           10 LVIGFILSFIRHVSTLSITVTDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDK   89 (212)
Q Consensus        10 ~~~~~l~~l~~~~~al~f~i~~~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~g~   89 (212)
                      ++++++|++...+..+++++.+++||+|++. .|+.+.++ |+|.+|+      .+++++.|++|+|+.+++..+.+.|+
T Consensus         8 ~vll~~L~~~~~~~~is~~ah~eeCf~e~~~-~gd~~~vs-F~v~~gg------~~~vd~~I~gP~~~~i~~~~~~ssgk   79 (201)
T KOG1692|consen    8 IVLLGLLFISAAGYGISLDAHEEECFFENLE-EGDKLSVS-FEVIDGG------FLGVDVEITGPDGKIIHKGKRESSGK   79 (201)
T ss_pred             HHHHHHHHHHhhheeEEEccchhhhHhhhhc-cCCEEEEE-EEEecCC------ccceeEEEECCCCchhhhcccccCce
Confidence            3445555555778888888889999999999 69999999 9999974      68999999999999999999999999


Q ss_pred             EEEEcCCceeeEEEEEcCCC--CCeEEEEEEEEcccCCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178           90 FVFKAPRSGMYQFCFHNPTS--TPEEVSFYIHIGHIPNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHR  167 (212)
Q Consensus        90 ~~f~~~~~G~y~~Cf~n~~~--~~~~V~f~i~~g~~~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~  167 (212)
                      |+|+++.+|.|++||+|..+  .||.|.|+|++|+.+++++.+++++.+++++.+.+|.+.+..++.||+|+..||.+||
T Consensus        80 ~tF~a~~~G~Y~fCF~N~~s~mtpk~V~F~ihvg~~~~~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr  159 (201)
T KOG1692|consen   80 YTFTAPKKGTYTFCFSNKMSTMTPKTVMFTIHVGHAPQRDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARERIHR  159 (201)
T ss_pred             EEEEecCCceEEEEecCCCCCCCceEEEEEEEEeeccccchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            99999999999999999999  5999999999999888888899999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 028178          168 STNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAA  208 (212)
Q Consensus       168 ~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~kk~  208 (212)
                      .++|+|++||.|||++|.++||+++++|||||||||+.|+.
T Consensus       160 ~~nEntn~RVv~wsife~~vLi~~s~~QVyYLkRfFEvkrv  200 (201)
T KOG1692|consen  160 NTNENTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFEVKRV  200 (201)
T ss_pred             HhhhcccceeehHHHHHHHHHHHHHHHHHHHHHHhheeeec
Confidence            99999999999999999999999999999999999999874

>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.9e-44  Score=268.89  Aligned_cols=195  Identities=21%  Similarity=0.323  Sum_probs=170.2

Q ss_pred             HHHHHHHHHhhcceEEEEEeC--CcceEEEecCCCCCEEEEeEEEEEeCc----cccCCCCCceeEEEEcCCCc--eeee
Q 028178           10 LVIGFILSFIRHVSTLSITVT--DTECVYEHVIYKEDTITGNVFVTTDHE----LFWNSDHPGIDFTVTCPDGS--IVRA   81 (212)
Q Consensus        10 ~~~~~l~~l~~~~~al~f~i~--~~~Cf~e~v~~~~~~i~~~~y~v~~~~----~~~~~~~~~i~~~v~~p~g~--~v~~   81 (212)
                      .++++|++|+..+.|++|+++  +++||++++|+ ++.+.|+ |.+.-.+    .+...++.++.+.|.+|.++  +|.+
T Consensus         6 ~~~lll~~l~~~~~a~yFy~~~~e~KCF~eelpk-~tmv~G~-yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~   83 (215)
T KOG1690|consen    6 RLLLLLLLLATQVQALYFYIAGTEKKCFIEELPK-GTMVTGN-YKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLS   83 (215)
T ss_pred             HHHHHHHHHHhhccEEEEEecCCcccchhhhCCC-CcEEEee-eeeeeecchhcccccCCCceEEEEeecCCCCceEEEe
Confidence            456778888999999999996  68999999995 9999999 9987422    11123567799999999765  9999


Q ss_pred             eecccCCEEEEEcCCceeeEEEEEcCCCC-----CeEEEEEEEEcccCC-CCcccccCCcchHHHHHHHHHHHHHHHHHH
Q 028178           82 LKGTSGDKFVFKAPRSGMYQFCFHNPTST-----PEEVSFYIHIGHIPN-EHDLAKDEHLDPIYVRIAELREALETVSAE  155 (212)
Q Consensus        82 ~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~-----~~~V~f~i~~g~~~~-~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~  155 (212)
                      +++.++|+|+|++..+|+|+||+.+..+.     ..+|.+++++|.... |.+  .+++.+.++.++..|++++.+|..|
T Consensus        84 q~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a~--~ke~~k~l~~Rv~~L~~~~~~IrkE  161 (215)
T KOG1690|consen   84 QQYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDAQ--IKETDKLLEGRVRQLNSRLESIRKE  161 (215)
T ss_pred             ecCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhhh--hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988763     568999999998742 322  3566788889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 028178          156 QRYLKALESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAA  208 (212)
Q Consensus       156 q~~~~~re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~kk~  208 (212)
                      |+++|.||+++|++.||+|+|++||+++|+++|+++|+||+.|||+||.++|.
T Consensus       162 Q~~~R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqKl  214 (215)
T KOG1690|consen  162 QNLQREREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQKL  214 (215)
T ss_pred             HHHHHHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999874

>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-41  Score=259.47  Aligned_cols=194  Identities=26%  Similarity=0.486  Sum_probs=176.1

Q ss_pred             HHHHHHHHHhhcceEEEEEeC--CcceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeecccC
Q 028178           10 LVIGFILSFIRHVSTLSITVT--DTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSG   87 (212)
Q Consensus        10 ~~~~~l~~l~~~~~al~f~i~--~~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~   87 (212)
                      +.++++++++..++|+.|+++  .++|+.|++. .|..+.|. |.+.+....   ..+.+++.|+||.|+.+++.++.++
T Consensus         8 ~~l~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~-~n~lv~g~-y~i~~~~~~---~~~~~~~~Vts~~G~~~~~~env~~   82 (210)
T KOG1691|consen    8 LLLLIFLLLLPLVHALRFDVPSKTTKCISEEIH-ENVLVVGD-YEIINPNGD---HSHKLSVKVTSPYGNNLHSKENVTK   82 (210)
T ss_pred             HHHHHHHHHhhhhheEEEEecCCCCEeehhhhc-cCeEEEEE-EEEecCCCC---ccceEEEEEEcCCCceeehhhcccc
Confidence            444556677899999999996  6899999999 48899999 999886521   1157999999999999999999999


Q ss_pred             CEEEEEcCCceeeEEEEEc--CCCC---CeEEEEEEEEccc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178           88 DKFVFKAPRSGMYQFCFHN--PTST---PEEVSFYIHIGHI-PNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKA  161 (212)
Q Consensus        88 g~~~f~~~~~G~y~~Cf~n--~~~~---~~~V~f~i~~g~~-~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~  161 (212)
                      |+|+|++.++|.|..||.+  +...   ...|.|++..|.+ +||+++||+++++|+|.++++|.+.++.|.++..|++.
T Consensus        83 gqFaFta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YLr~  162 (210)
T KOG1691|consen   83 GQFAFTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYLRE  162 (210)
T ss_pred             ceEEEEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999  4333   3689999999987 68999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 028178          162 LESRHRSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAA  208 (212)
Q Consensus       162 re~~~~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~kk~  208 (212)
                      ||+++|+++++||+||.|+|++-++++++++.||++|||+||++||.
T Consensus       163 REeemr~~nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKKL  209 (210)
T KOG1691|consen  163 REEEMRNTNESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKKL  209 (210)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999985

>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-40  Score=250.08  Aligned_cols=190  Identities=28%  Similarity=0.463  Sum_probs=167.1

Q ss_pred             HHHHHHhhcceEEEEEeC--CcceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeecccCCEE
Q 028178           13 GFILSFIRHVSTLSITVT--DTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKF   90 (212)
Q Consensus        13 ~~l~~l~~~~~al~f~i~--~~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~g~~   90 (212)
                      ++++++++.+..++|+++  ..+|||+++++.++.++.. |+|+.||      +.+||+.|++|+|++|++..++..+.|
T Consensus        12 ~lla~~~s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~-fqV~tGG------~fDVD~~I~aPdgkvI~~~~kk~~~~~   84 (209)
T KOG1693|consen   12 LLLALLFSEASELTFELPDNAKQCFYEDLKKDDDTTSFE-FQVQTGG------HFDVDYDIEAPDGKVIYSEKKKRYDSF   84 (209)
T ss_pred             HHHHHHhhhcccEEEEcCCcchhheeeecccCCceEEEE-EEEEeCC------ceeeEEEEECCCCCEEeeccccccccE
Confidence            334445555889999996  5899999999744459999 9999986      568999999999999999999999999


Q ss_pred             EEEcCCceeeEEEEEcCCCC--CeEEEEEEEEcccCCCCcc--cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178           91 VFKAPRSGMYQFCFHNPTST--PEEVSFYIHIGHIPNEHDL--AKDEHLDPIYVRIAELREALETVSAEQRYLKALESRH  166 (212)
Q Consensus        91 ~f~~~~~G~y~~Cf~n~~~~--~~~V~f~i~~g~~~~~~~~--a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~  166 (212)
                      .|++...|+|++||+|..++  .|.|++++++|.+.+....  +.+..++.++..+..+.+.|+.|.+.|.|.|.||.+.
T Consensus        85 ~f~ae~~G~Y~fCFsN~fstf~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn  164 (209)
T KOG1693|consen   85 LFKAEGKGEYTFCFSNEFSTFSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARN  164 (209)
T ss_pred             EEEEecceEEEEEecCccccccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999985  7999999999976432211  2234567899999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 028178          167 RSTNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAAY  209 (212)
Q Consensus       167 ~~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~kk~~  209 (212)
                      +.++++++.||+|||++++++++++++.||+.||.||+.|+.-
T Consensus       165 ~~tv~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r~~  207 (209)
T KOG1693|consen  165 RSTVESTNSRVTWWSLLEIIAVVVISIAQVFILKFFFTDRRKR  207 (209)
T ss_pred             ccchhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcC
Confidence            9999999999999999999999999999999999999988754

>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-34  Score=221.93  Aligned_cols=179  Identities=27%  Similarity=0.405  Sum_probs=155.6

Q ss_pred             EEEEEe--CCcceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeecccCCEEEEEcCCceeeE
Q 028178           24 TLSITV--TDTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQ  101 (212)
Q Consensus        24 al~f~i--~~~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~  101 (212)
                      .+++.+  |+++|||+.++. +-++.+. |+|++|.     ++.+|++.+.+|.|.++...+.+..|.+++.+.++|.|+
T Consensus        35 dftv~ipAGk~eCf~Q~v~~-~~tle~e-yQVi~G~-----GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~  107 (236)
T KOG3287|consen   35 DFTVMIPAGKTECFYQPVPQ-GATLEVE-YQVIDGA-----GDLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQ  107 (236)
T ss_pred             ceEEEecCCCceeeeeeccC-CeEEEEE-EEEEecC-----CccceeeEEeCCCccEEeecccccCceeEeeccCCcceE
Confidence            455666  479999999995 8899999 9999983     468899999999999999999999999999999999999


Q ss_pred             EEEEcCCCC--CeEEEEEEEEccc---C----CCCcccc-----cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028178          102 FCFHNPTST--PEEVSFYIHIGHI---P----NEHDLAK-----DEHLDPIYVRIAELREALETVSAEQRYLKALESRHR  167 (212)
Q Consensus       102 ~Cf~n~~~~--~~~V~f~i~~g~~---~----~~~~~a~-----~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~  167 (212)
                      +||+|++|+  .|.|.|++-+...   .    .|.+.++     ..+++++++.+.++..+++.+...|..+|.||.|+|
T Consensus       108 ~CfDNsFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr  187 (236)
T KOG3287|consen  108 VCFDNSFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDR  187 (236)
T ss_pred             EEEcCccccccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            999999996  7999999955322   1    1111111     245788999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 028178          168 STNESTRKRVVFYTVSEYLLLAGAGALQVMYIRRLFGKTAAY  209 (212)
Q Consensus       168 ~~~es~~~rv~~~si~~i~vli~~~~~Qv~~lk~fF~~kk~~  209 (212)
                      ...+++..||.|||.+|+++||+++..|||+|||+|..|+..
T Consensus       188 ~L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~~~  229 (236)
T KOG3287|consen  188 NLQESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKSKS  229 (236)
T ss_pred             HHHhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCCCc
Confidence            999999999999999999999999999999999999988654

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=100.00  E-value=1e-37  Score=241.93  Aligned_cols=174  Identities=35%  Similarity=0.656  Sum_probs=5.5

Q ss_pred             EEEEEeC--CcceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEE--cCCCceeeeeeccc-CCEEEEEcCCce
Q 028178           24 TLSITVT--DTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVT--CPDGSIVRALKGTS-GDKFVFKAPRSG   98 (212)
Q Consensus        24 al~f~i~--~~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~--~p~g~~v~~~~~~~-~g~~~f~~~~~G   98 (212)
                      |++|+++  +++||++++++ ++.+.++ |.+.+++     ++.++++.|+  +|+|+.++.+.+.. +|.|+|+++++|
T Consensus         1 a~~f~l~~g~~~Cf~e~v~~-~~~i~~~-y~v~~~~-----~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G   73 (183)
T PF01105_consen    1 ALTFELEPGETECFYEEVPK-GTTIRGS-YRVTDGG-----GAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESG   73 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEECCCCcEEEEEEcCC-CcEEEEE-EEEeecc-----ccceEEEEEEecccCCceeeeecccccCCcEEEEeccCC
Confidence            5778884  78999999995 9999999 9999874     2568999999  56669999886654 479999999999


Q ss_pred             eeEEEEEcCCCC--C-eEEEEEEEEccc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028178           99 MYQFCFHNPTST--P-EEVSFYIHIGHI-PNEHDLAKDEHLDPIYVRIAELREALETVSAEQRYLKALESRHRSTNESTR  174 (212)
Q Consensus        99 ~y~~Cf~n~~~~--~-~~V~f~i~~g~~-~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~  174 (212)
                      +|++||+|+.+.  + +.|+|++++|.+ .++.+.++++++++++..|++|.+.++.|.++|+|++.|+.+|++.+++++
T Consensus        74 ~y~iCf~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~  153 (183)
T PF01105_consen   74 EYQICFDNSSSSFSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTN  153 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEEcCCCCccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999986  4 899999999865 356778889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028178          175 KRVVFYTVSEYLLLAGAGALQVMYIRRLFG  204 (212)
Q Consensus       175 ~rv~~~si~~i~vli~~~~~Qv~~lk~fF~  204 (212)
                      .|++||+++++++++++++||+++||+||+
T Consensus       154 ~~i~~~si~~~~vli~~~~~Qv~~lk~~f~  183 (183)
T PF01105_consen  154 SRIMWWSIIQIVVLILVSVWQVYYLKKFFK  183 (183)
T ss_dssp             ------------------------HHHHHH
T ss_pred             heEEhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999996

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=94.86  E-value=0.79  Score=31.40  Aligned_cols=68  Identities=18%  Similarity=0.256  Sum_probs=42.2

Q ss_pred             CCCEEEEeEEEEEeCcc-ccCCCCCceeEEEEcCCCceeeeeec---ccCCEEE--EEcCC---ceeeEEEEEcCCCC
Q 028178           42 KEDTITGNVFVTTDHEL-FWNSDHPGIDFTVTCPDGSIVRALKG---TSGDKFV--FKAPR---SGMYQFCFHNPTST  110 (212)
Q Consensus        42 ~~~~i~~~~y~v~~~~~-~~~~~~~~i~~~v~~p~g~~v~~~~~---~~~g~~~--f~~~~---~G~y~~Cf~n~~~~  110 (212)
                      +|+.|.+. --+.+.+. .....+..+.+.|.||+|+.+.....   ...|.++  |..+.   .|.|++=+......
T Consensus        13 PGetV~~~-~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~~   89 (99)
T PF01835_consen   13 PGETVHFR-AIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDDG   89 (99)
T ss_dssp             TTSEEEEE-EEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTTT
T ss_pred             CCCEEEEE-EEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccCC
Confidence            57888877 33333321 11123567999999999999988765   3456444  44332   59999988875443

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=92.53  E-value=1.3  Score=30.10  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=33.2

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCCE--EEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGDK--FVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|+.+.-+ .+...|.  .+|++...|.|.+.+.-..
T Consensus        31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g   78 (93)
T smart00557       31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG   78 (93)
T ss_pred             CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            4679999999999655543 3334464  5688999999999888654

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.23  E-value=1.9  Score=27.56  Aligned_cols=61  Identities=20%  Similarity=0.276  Sum_probs=41.5

Q ss_pred             ceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeeccc--C---CEEEEEcCCceeeEEEE
Q 028178           33 ECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKGTS--G---DKFVFKAPRSGMYQFCF  104 (212)
Q Consensus        33 ~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~--~---g~~~f~~~~~G~y~~Cf  104 (212)
                      ..|..++++ +..+.+.   +...       ..+.++.+.+++|..+.......  .   ....|+++.+|+|-+=+
T Consensus         3 D~y~f~v~a-g~~l~i~---l~~~-------~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V   68 (70)
T PF04151_consen    3 DYYSFTVPA-GGTLTID---LSGG-------SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV   68 (70)
T ss_dssp             EEEEEEEST-TEEEEEE---ECET-------TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred             EEEEEEEcC-CCEEEEE---EcCC-------CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence            467788995 7776655   4332       23688999999987766632222  2   35778899999998744

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....

>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking

Probab=90.07  E-value=0.55  Score=34.37  Aligned_cols=28  Identities=21%  Similarity=0.450  Sum_probs=23.3

Q ss_pred             EEEcCCceeeEEEEEcCCCC--CeEEEEEE
Q 028178           91 VFKAPRSGMYQFCFHNPTST--PEEVSFYI  118 (212)
Q Consensus        91 ~f~~~~~G~y~~Cf~n~~~~--~~~V~f~i  118 (212)
                      +++++.+|.|-++|+|+.+-  .|++.+.+
T Consensus       104 s~~c~~~GvYvLkFDNSYS~~rsK~l~Y~V  133 (136)
T PF13897_consen  104 SHTCPGPGVYVLKFDNSYSWFRSKKLYYRV  133 (136)
T ss_pred             EEECCCCeEEEEEeeCcceeEEeeEEEEEE
Confidence            46778999999999999984  78887765

>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod

Probab=87.86  E-value=5.2  Score=27.14  Aligned_cols=44  Identities=18%  Similarity=0.345  Sum_probs=31.1

Q ss_pred             CCceeEEEEcCCCc----eee-eeecccCCE--EEEEcCCceeeEEEEEcC
Q 028178           64 HPGIDFTVTCPDGS----IVR-ALKGTSGDK--FVFKAPRSGMYQFCFHNP  107 (212)
Q Consensus        64 ~~~i~~~v~~p~g~----~v~-~~~~~~~g~--~~f~~~~~G~y~~Cf~n~  107 (212)
                      ...+.+.|.+|++.    .+. +-.....|.  .+|++...|.|++++.-.
T Consensus        41 ~~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~   91 (101)
T PF00630_consen   41 GDEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN   91 (101)
T ss_dssp             SSEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred             CceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence            34688999999986    332 223445664  568899999999988753

Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....

>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins

Probab=85.03  E-value=8.2  Score=29.92  Aligned_cols=26  Identities=12%  Similarity=0.185  Sum_probs=21.0

Q ss_pred             CCCEEEEeEEEEEeCccccCCCCCceeEEEEc
Q 028178           42 KEDTITGNVFVTTDHELFWNSDHPGIDFTVTC   73 (212)
Q Consensus        42 ~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~   73 (212)
                      +|+.+.+. |.+...|     +....++.+.|
T Consensus        36 ~g~~v~V~-~~iyN~G-----~~~A~dV~l~D   61 (181)
T PF05753_consen   36 EGEDVTVT-YTIYNVG-----SSAAYDVKLTD   61 (181)
T ss_pred             CCcEEEEE-EEEEECC-----CCeEEEEEEEC
Confidence            58889999 9998765     34668899998

The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains

Probab=84.16  E-value=3  Score=26.39  Aligned_cols=44  Identities=23%  Similarity=0.356  Sum_probs=35.8

Q ss_pred             ceeEEEEcCCCceeee--eecccCCEEEEEcCCceeeEEEEEcCCC
Q 028178           66 GIDFTVTCPDGSIVRA--LKGTSGDKFVFKAPRSGMYQFCFHNPTS  109 (212)
Q Consensus        66 ~i~~~v~~p~g~~v~~--~~~~~~g~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ++.|.|++.++..+..  ..-...|.+.|.--.+|.|.+=......
T Consensus         3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~   48 (70)
T PF05738_consen    3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPD   48 (70)
T ss_dssp             TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTT
T ss_pred             CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCC
Confidence            5788999998888775  5556778999998899999998887444

The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=84.00  E-value=6.1  Score=27.59  Aligned_cols=47  Identities=19%  Similarity=0.287  Sum_probs=31.9

Q ss_pred             CCceeEEEEcCCCceeeeeeccc--CCEEEEE--cCCceeeEEEEEcCCCC
Q 028178           64 HPGIDFTVTCPDGSIVRALKGTS--GDKFVFK--APRSGMYQFCFHNPTST  110 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~~~--~g~~~f~--~~~~G~y~~Cf~n~~~~  110 (212)
                      ..++.+.|+|.+|+++|++....  .+...+.  ....|.|.+=+.+....
T Consensus        47 ~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g~   97 (106)
T PF11589_consen   47 IGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNGT   97 (106)
T ss_dssp             -SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC-
T ss_pred             CCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCCC
Confidence            35699999999999999874333  3345555  45689999999988763

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A

Probab=83.11  E-value=7.8  Score=25.08  Aligned_cols=46  Identities=28%  Similarity=0.455  Sum_probs=32.1

Q ss_pred             CceeEEEEcCCCceeeeeecccCCEEEEEcCCceeeEEEEEcCCCC
Q 028178           65 PGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFHNPTST  110 (212)
Q Consensus        65 ~~i~~~v~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~  110 (212)
                      ++..+.+.++++.......-..+|.|.|..-.+|.|.+=+.-....
T Consensus        15 ~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~   60 (82)
T PF13620_consen   15 PGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQ   60 (82)
T ss_dssp             TT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE
T ss_pred             CCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcc
Confidence            5688899988887777777778899999955669999998766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 34/219 (15%), Positives = 55/219 (25%), Gaps = 67/219 (30%)

Query: 7   QVCLVIGFILSFI--------------RHVST--------LSITVTDTECVYEH----VI 40
           +V       LS I              +HV+          S+ V +     +      +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 41  YKEDT-ITGNVFVTTDHELFWNSDHPG--IDFTVTCPDGSIV--RALKGTSGD---KFVF 92
           +     I   +       L W        +         S+V  +  + T          
Sbjct: 381 FPPSAHIPTILL-----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 93  KAPRSGMYQ--------------FCFHNPTSTPEEVSFYIHIGHIPNEHDLAKDEHLDPI 138
           K      Y               F   +      +  FY HIGH           HL  I
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-----------HLKNI 484

Query: 139 YVRIAELREALETVSAEQRYLKALESRHRSTNESTRKRV 177
                E       V  + R+L+  + RH ST  +    +
Sbjct: 485 --EHPERMTLFRMVFLDFRFLEQ-KIRHDSTAWNASGSI 520

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 17/157 (10%), Positives = 48/157 (30%), Gaps = 40/157 (25%)

Query: 38  HVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPD--GSIVRALKGTSGDKFVF--- 92
               ++ ++   +++    +  +N +     + V+       + +AL      K V    
Sbjct: 99  KTEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 93  -----K------APRSGMYQFCFHNPTSTPEEVSFYIHIGHIPNEHDL------------ 129
                K         S   Q           ++ F++++ +  +   +            
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKM------DFKI-FWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 130 ----AKDEHLDPIYVRIAELREALETVSAEQRYLKAL 162
               ++ +H   I +RI  ++  L  +   + Y   L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	94.95
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	93.14
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	92.91
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	92.72
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	91.15
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	90.65
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	90.32
3rgh_A	100	Filamin-A; cell adhesion, cytoskeleton-complex, di	89.91
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	89.42
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.84
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.46
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	88.34
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.22
1v05_A	96	Filamin C; actin-binding protein, immunoglobulin;	86.87
2e9j_A	119	Filamin-B; beta-sandwich, immunoglobulin-like fold	86.33
2dic_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	86.28
2dia_A	113	Filamin-B; beta-sandwich, immunoglobulin-like fold	85.95
2w0p_A	94	Filamin-A; alternative splicing, cytoskeleton/comp	85.65
2eea_A	115	Filamin-B; beta-sandwich, immunoglobulin-like fold	85.57
2dmc_A	116	Filamin-B; beta-sandwich, immunoglobulin-like fold	84.73
2nqc_A	138	Filamin-C; immunoglobulin, metal binding, immune s	83.31
2bp3_A	97	Filamin A; structural protein, cytoskeleton/comple	83.07
2k9u_A	119	Gamma filamin; cytoskeletal complex, alternative s	82.98
3d33_A	108	Domain of unknown function with AN immunoglobulin	80.24

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=94.95  E-value=0.41  Score=40.36  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=28.8

Q ss_pred             EEEEEcCCceeeEEEEEcCCC--CCeEEEEEEEEcc
Q 028178           89 KFVFKAPRSGMYQFCFHNPTS--TPEEVSFYIHIGH  122 (212)
Q Consensus        89 ~~~f~~~~~G~y~~Cf~n~~~--~~~~V~f~i~~g~  122 (212)
                      .=++++.++|.|.++|+|+.|  ..|+|.+.+.+..
T Consensus       350 ~G~~~~~~~G~y~l~fdNs~S~~~~k~l~y~v~v~~  385 (403)
T 1olm_A          350 DGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLL  385 (403)
T ss_dssp             EEEEECCSCEEEEEEEECTTCCCCSEEEEEEEEEEC
T ss_pred             cCEEEcCCCeEEEEEEeccccceeceEEEEEEEEeC
Confidence            345789999999999999998  4799999988854

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=93.14  E-value=1.2  Score=29.63  Aligned_cols=65  Identities=15%  Similarity=0.187  Sum_probs=41.6

Q ss_pred             CCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCceeeeeec--ccCCEE--EEEc---CCceeeEEEEEcCC
Q 028178           42 KEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSIVRALKG--TSGDKF--VFKA---PRSGMYQFCFHNPT  108 (212)
Q Consensus        42 ~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~~--~~~g~~--~f~~---~~~G~y~~Cf~n~~  108 (212)
                      +|++|.+. .-+.+.+..+ .....+.+.|.||+|+.+.+...  ...|.+  .|..   ...|.|++......
T Consensus        15 PGetV~~~-~~~~~~~~~p-~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~   86 (102)
T 2p9r_A           15 PGQTVKFR-VVSMDENFHP-LNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS   86 (102)
T ss_dssp             TTCEEEEE-EEEECGGGCB-CCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred             CCCEEEEE-EEEECCCCcC-CCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC
Confidence            57888877 5455543211 12333789999999999887432  234644  4444   34699999998754

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=92.91  E-value=0.31  Score=32.48  Aligned_cols=46  Identities=13%  Similarity=0.204  Sum_probs=34.1

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCC--EEEEEcCCceeeEEEEEcCCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGD--KFVFKAPRSGMYQFCFHNPTS  109 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ..++.+.|.+|+|..+.-. .+...|  ...|++.+.|.|.+++.-...
T Consensus        21 ~~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~   69 (93)
T 2d7n_A           21 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGN   69 (93)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSS
T ss_pred             CCCEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECCE
Confidence            4569999999999865432 223445  567889999999999986554

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.72  E-value=0.28  Score=32.92  Aligned_cols=47  Identities=13%  Similarity=0.147  Sum_probs=34.5

Q ss_pred             CCCceeEEEEcCCCceeeee-ecccCC--EEEEEcCCceeeEEEEEcCCC
Q 028178           63 DHPGIDFTVTCPDGSIVRAL-KGTSGD--KFVFKAPRSGMYQFCFHNPTS  109 (212)
Q Consensus        63 ~~~~i~~~v~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ...++.+.|.+|+|..+.-. .+...|  ...|++.+.|.|.+++.-...
T Consensus        28 g~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~   77 (95)
T 2ee9_A           28 RKGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGS   77 (95)
T ss_dssp             CTTSEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESSC
T ss_pred             CCCCEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECCE
Confidence            35679999999999765543 223445  466789999999999986553

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=91.15  E-value=1.1  Score=30.79  Aligned_cols=54  Identities=17%  Similarity=0.203  Sum_probs=37.2

Q ss_pred             EEEEeCccccCCCCCceeEEEEcCCCceeeeee-cccCC--EEEEEcCCceeeEEEEEcCCC
Q 028178           51 FVTTDHELFWNSDHPGIDFTVTCPDGSIVRALK-GTSGD--KFVFKAPRSGMYQFCFHNPTS  109 (212)
Q Consensus        51 y~v~~~~~~~~~~~~~i~~~v~~p~g~~v~~~~-~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      |.|...+     .+..+.+.|.+|+|..+.-.. ....|  ...|++++.|.|.+.+.-...
T Consensus        32 F~V~~~~-----a~g~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g~   88 (112)
T 2d7p_A           32 FAVQLNG-----ARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGA   88 (112)
T ss_dssp             EEEECTT-----CCSCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSC
T ss_pred             EEEEeCC-----CCCCEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECCe
Confidence            5565544     235799999999997655432 23445  456889999999998885543

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=90.65  E-value=1.5  Score=30.59  Aligned_cols=47  Identities=19%  Similarity=0.273  Sum_probs=34.0

Q ss_pred             CCCceeEEEEcCCCceeeee-ecccCC--EEEEEcCCceeeEEEEEcCCC
Q 028178           63 DHPGIDFTVTCPDGSIVRAL-KGTSGD--KFVFKAPRSGMYQFCFHNPTS  109 (212)
Q Consensus        63 ~~~~i~~~v~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ....+.+.|.+|+|..+.-+ .+...|  ...|++.+.|.|.+++.-...
T Consensus        41 G~~~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g~   90 (124)
T 2dmb_A           41 GKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGV   90 (124)
T ss_dssp             CSCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSC
T ss_pred             CCCcEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECCE
Confidence            35679999999998655433 223445  467889999999999985543

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=90.32  E-value=1.6  Score=29.92  Aligned_cols=46  Identities=13%  Similarity=0.206  Sum_probs=33.2

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCC--EEEEEcCCceeeEEEEEcCCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGD--KFVFKAPRSGMYQFCFHNPTS  109 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ...+.+.|.+|+|..+... .+...|  ..+|++.+.|.|.+.+.-...
T Consensus        43 ~~~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~   91 (115)
T 2d7m_A           43 EGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGD   91 (115)
T ss_dssp             SSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSC
T ss_pred             CCEEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEECCE
Confidence            4569999999998655433 223445  456889999999999986543

>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0

Probab=89.91  E-value=2.3  Score=28.31  Aligned_cols=45  Identities=7%  Similarity=0.153  Sum_probs=31.5

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCCE--EEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGDK--FVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|..+.-+ .+...|.  .+|++...|.|.+.+.-..
T Consensus        38 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~~~g   85 (100)
T 3rgh_A           38 SAELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKYGG   85 (100)
T ss_dssp             SCCEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEEETT
T ss_pred             CceEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            4579999999998655433 2334454  5688899999988876443

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=89.42  E-value=2  Score=27.82  Aligned_cols=45  Identities=13%  Similarity=0.097  Sum_probs=31.4

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCCE--EEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGDK--FVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|..+.-+ .+...|.  .+|++.++|.|.+.+.-..
T Consensus        29 ~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   76 (89)
T 3cnk_A           29 NNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGH   76 (89)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEECC
Confidence            4568999999998643222 2334564  5688999999999888544

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=88.84  E-value=2.2  Score=28.84  Aligned_cols=46  Identities=11%  Similarity=0.217  Sum_probs=32.9

Q ss_pred             CCCceeEEEEcCCCceeeee-ecccCCE--EEEEcCCceeeEEEEEcCC
Q 028178           63 DHPGIDFTVTCPDGSIVRAL-KGTSGDK--FVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        63 ~~~~i~~~v~~p~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ....+.+.|.+|+|..+.-+ .+...|.  .+|++.+.|.|.+.+.-..
T Consensus        41 G~~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   89 (108)
T 2dj4_A           41 GLAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYAD   89 (108)
T ss_dssp             CSCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESS
T ss_pred             CCceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            35679999999999654432 2334564  5678899999999988554

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.46  E-value=2.5  Score=28.43  Aligned_cols=44  Identities=14%  Similarity=0.290  Sum_probs=33.1

Q ss_pred             CCceeEEEEcCCCceeeeeecccCC--EEEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRALKGTSGD--KFVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|.+..+ +-.+...|  ..+|++..+|.|.+.+.-..
T Consensus        41 ~~~l~v~v~~p~~~~v-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g   86 (105)
T 2ee6_A           41 AGGLSIAVEGPSKAEI-TFDDHKNGSCGVSYIAQEPGNYEVSIKFND   86 (105)
T ss_dssp             CCCEEEEEESSSCEEE-EECCCCSSCCCEEEEESSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEE-EEEECCCCEEEEEEEECCCceEEEEEEECC
Confidence            4679999999998655 32334455  57899999999999998544

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=88.34  E-value=2  Score=29.61  Aligned_cols=66  Identities=17%  Similarity=0.112  Sum_probs=45.2

Q ss_pred             CcceEEEecCCCCCEEEEeEEEEEeCccccCCCCCceeEEEEcCCCce---eeeeecccCCEEEEEcCCceeeEEEEEcC
Q 028178           31 DTECVYEHVIYKEDTITGNVFVTTDHELFWNSDHPGIDFTVTCPDGSI---VRALKGTSGDKFVFKAPRSGMYQFCFHNP  107 (212)
Q Consensus        31 ~~~Cf~e~v~~~~~~i~~~~y~v~~~~~~~~~~~~~i~~~v~~p~g~~---v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~  107 (212)
                      +...+...+. .|+.+.+. .   +.       +..+.+.|.+|+++.   ++.......+.++-+.+.+|.|++=+...
T Consensus        28 ~~~~Y~~~a~-aGQ~l~V~-l---s~-------~~~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~~~   95 (114)
T 4dzg_A           28 DTIHYTLVAX-AGQTMTVX-I---GG-------SSNANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVYQM   95 (114)
T ss_dssp             CCEEEECCC--CCCEEEC--C---EE-------STTCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEECC
T ss_pred             CceEEEEEec-CCCEEEEE-e---CC-------CCcEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEEec
Confidence            3467777777 48888877 3   22       345888999999874   34443334458888999999999999987


Q ss_pred             C
Q 028178          108 T  108 (212)
Q Consensus       108 ~  108 (212)
                      .
T Consensus        96 r   96 (114)
T 4dzg_A           96 R   96 (114)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=88.22  E-value=0.81  Score=30.93  Aligned_cols=46  Identities=15%  Similarity=0.206  Sum_probs=33.8

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCCE--EEEEcCCceeeEEEEEcCCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGDK--FVFKAPRSGMYQFCFHNPTS  109 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ..++.+.|.+|+|..+.-. .+...|.  .+|++.+.|.|.+.+.-...
T Consensus        30 ~~~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g~   78 (102)
T 2dlg_A           30 SSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQ   78 (102)
T ss_dssp             GGGCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSSS
T ss_pred             CCCEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECCE
Confidence            4579999999999765543 2334454  56789999999999986553

>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A

Probab=86.87  E-value=4.1  Score=26.71  Aligned_cols=45  Identities=11%  Similarity=0.097  Sum_probs=31.2

Q ss_pred             CCceeEEEEcCCCceeee-eecccCCE--EEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRA-LKGTSGDK--FVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~-~~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|..+.- -.+...|.  .+|++.+.|.|.+.+.-..
T Consensus        36 ~~~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   83 (96)
T 1v05_A           36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEEEEECC
Confidence            456899999999854321 12334564  5688999999999888544

>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.33  E-value=1.7  Score=30.01  Aligned_cols=45  Identities=13%  Similarity=0.217  Sum_probs=32.1

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCCE--EEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGDK--FVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|..+.-+ .+...|.  .+|++.+.|.|.+.+.-..
T Consensus        53 ~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g  100 (119)
T 2e9j_A           53 EGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGG  100 (119)
T ss_dssp             CCCEECCEECTTCCCCCEEEEECCSSEEEEEECCCSCSEEEECCEESS
T ss_pred             CCeEEEEEECCCCCEEEEEEEECCCCEEEEEEEeCCCEEEEEEEEECC
Confidence            5679999999998654433 2234564  5678899999999888554

>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=86.28  E-value=4.6  Score=27.04  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=31.8

Q ss_pred             CCceeEEEEcCCCceeeeeecccCC--EEEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRALKGTSGD--KFVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ..++.+.|.+|.+..+.-. +...|  ..+|++..+|.|.+.+.-..
T Consensus        41 ~g~l~v~v~gp~~~~~~v~-d~~dGty~v~Y~p~~~G~y~I~V~~~g   86 (105)
T 2dic_A           41 IGGLGITVEGPSESKINCR-DNKDGSCSAEYIPFAPGDYDVNITYGG   86 (105)
T ss_dssp             SSCEEEEEESSSCCCCEEE-ECSSSCEEEEECCSSCEEEEEEEEETT
T ss_pred             CCceEEEEECCCCCeEEEE-ECCCCeEEEEEEeCCCeEEEEEEEECC
Confidence            4568899999987554332 23455  56788999999999988544

>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=85.95  E-value=4.3  Score=27.59  Aligned_cols=45  Identities=9%  Similarity=0.225  Sum_probs=32.8

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCC--EEEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGD--KFVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|..+.-. .+...|  ..+|++...|.|.+.+.-..
T Consensus        41 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   88 (113)
T 2dia_A           41 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGG   88 (113)
T ss_dssp             SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CccEEEEEECCCCCEeeEEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence            4679999999988655443 233456  45688999999999998654

>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A

Probab=85.65  E-value=5.6  Score=25.96  Aligned_cols=44  Identities=11%  Similarity=0.230  Sum_probs=31.6

Q ss_pred             CCceeEEEEcCCCceeeeeecccCC--EEEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRALKGTSGD--KFVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|.+..+.- .+...|  ..+|++..+|.|.+.+.-..
T Consensus        33 ~~~~~v~v~gp~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g   78 (94)
T 2w0p_A           33 AGGLAIAVEGPSKAEISF-EDRKDGSCGVAYVVQEPGDYEVSVKFNE   78 (94)
T ss_dssp             SCCEEEEEEESSCCEEEE-EECTTSCEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCeEEE-EECCCCEEEEEEEECCCceEEEEEEECC
Confidence            456888999998854432 233445  46788999999999988544

>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.57  E-value=5.2  Score=27.27  Aligned_cols=44  Identities=11%  Similarity=0.255  Sum_probs=32.2

Q ss_pred             CCceeEEEEcCCCceeeeeecccCC--EEEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRALKGTSGD--KFVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|++..+. -.+...|  ..+|++.++|.|.+.+.-..
T Consensus        51 ~~~l~v~v~~p~~~~~~-v~d~~dGty~v~Y~p~~~G~y~I~V~~~g   96 (115)
T 2eea_A           51 EGGLDLAIEGPSKAEIS-CIDNKDGTCTVTYLPTLPGDYSILVKYND   96 (115)
T ss_dssp             SSCEEEEEESSSCCEEC-CBCCSSSEEEEEEECSSCSCEEEEEEESS
T ss_pred             CCceEEEEECCCCceEE-EEECCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            46799999999985442 2334556  46788999999999888544

>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=84.73  E-value=1.1  Score=30.93  Aligned_cols=46  Identities=13%  Similarity=0.189  Sum_probs=33.9

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCC--EEEEEcCCceeeEEEEEcCCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGD--KFVFKAPRSGMYQFCFHNPTS  109 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ...+.+.|.+|+|..+-.. .....|  ..+|++.+.|.|.+.+.-...
T Consensus        44 ~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~e~G~h~v~V~~~g~   92 (116)
T 2dmc_A           44 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGN   92 (116)
T ss_dssp             STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSS
T ss_pred             CCCEEEEEECCCCCEEeeEEEeCCCCeEEEEEEeCCCeeEEEEEEECCE
Confidence            4579999999999755433 223455  457899999999999986553

>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A

Probab=83.31  E-value=5.4  Score=28.36  Aligned_cols=44  Identities=9%  Similarity=0.160  Sum_probs=31.5

Q ss_pred             CCceeEEEEcCCCceeeeeecccCC-EEEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRALKGTSGD-KFVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~~~~g-~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|++..+.-.. ..+| ..+|++.++|.|.+.+.-..
T Consensus        75 ~g~l~v~I~gPs~~~~~~~d-~~dGy~V~YtP~~~G~y~I~Vk~~g  119 (138)
T 2nqc_A           75 SGALSVTIDGPSKVQLDCRE-CPEGHVVTYTPMAPGNYLIAIKYGG  119 (138)
T ss_dssp             SCCEEEEEESSSCCEEEEEE-ETTEEEEEEECCSCEEEEEEEEESS
T ss_pred             CCcEEEEEECCCCCeeeEEE-CCCcEEEEEEcCCCEEEEEEEEECC
Confidence            45699999999986554332 3344 45688999999998887444

>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A

Probab=83.07  E-value=6.1  Score=25.92  Aligned_cols=44  Identities=9%  Similarity=0.233  Sum_probs=31.0

Q ss_pred             CCceeEEEEcCCCceeeeeecccCC--EEEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRALKGTSGD--KFVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|.+..+.- .+...|  ..+|++.++|.|.+.+.-..
T Consensus        36 ~~~l~v~v~~p~~~~~~v-~d~~dGty~v~Y~p~~~G~y~i~V~~~g   81 (97)
T 2bp3_A           36 EGGLSLAIEGPSKAEISC-TDNQDGTCSVSYLPVLPGDYSILVKYNE   81 (97)
T ss_dssp             SEEEEEEEEESSCCEEEE-EECSSSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEEE-EECCCCEEEEEEEeCCCCcEEEEEEECC
Confidence            456888899998754432 233456  46788999999999988543

>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}

Probab=82.98  E-value=7.5  Score=26.62  Aligned_cols=44  Identities=11%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             CCceeEEEEcCCCceeeeeecccCC--EEEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRALKGTSGD--KFVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|.+-.+. -.+...|  ..+|++.++|.|.+.+.-..
T Consensus        48 ~~~l~v~v~~p~~~~~~-v~d~~dGty~v~Y~p~~~G~y~I~V~~~g   93 (119)
T 2k9u_A           48 AGGLSIAVEGPSKAEIA-FEDRKDGSCGVSYVVQEPGDYEVSIKFND   93 (119)
T ss_dssp             SEEEEEEEESSSCCEEE-EECCSSSEEEEEEECCSSEEEEEEEEETS
T ss_pred             CCcEEEEEeCCCCCeEE-EEECCCCEEEEEEEECCCceEEEEEEECC
Confidence            45689999999884332 2334556  46788999999999998554

>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}

Probab=80.24  E-value=9.7  Score=25.89  Aligned_cols=45  Identities=9%  Similarity=0.093  Sum_probs=33.9

Q ss_pred             CCceeEEEE-cCCCceeeeeecccC--CEEEEEc--CCceeeEEEEEcCC
Q 028178           64 HPGIDFTVT-CPDGSIVRALKGTSG--DKFVFKA--PRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~-~p~g~~v~~~~~~~~--g~~~f~~--~~~G~y~~Cf~n~~  108 (212)
                      ..++.+.|+ +.+|+++|++.-...  ..+.+..  ..+|.|.+=+.+..
T Consensus        48 ~~~vtItI~~~~tG~iVY~~~v~~~~~~~~~I~L~~~~~G~Y~L~i~~~~   97 (108)
T 3d33_A           48 DRDMTIRITDMAKGGVVYENDIPEVQSAYITISIANFPAEEYKLEITGTP   97 (108)
T ss_dssp             CSEEEEEEEETTTCCEEEEEEECGGGTTEEEEECTTSCSEEEEEEEEEES
T ss_pred             CCCEEEEEEECCCCcEEEEEeecCCCCcEEEEEcCCccCceEEEEEEeCC
Confidence            467999999 788999998754333  4555554  57899999998873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	97.34
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	93.74
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	91.81
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.7
d2d7na1	80	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	91.37
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.29
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	90.92
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	90.43
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	90.27
d1qfha2	108	F-actin cross-linking gelation factor (ABP-120) re	89.96
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.9
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.51
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	88.5
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	88.11
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	86.46
d1qfha1	104	F-actin cross-linking gelation factor (ABP-120) re	85.63
d2dmca1	103	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.24
d2diba1	115	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.05
d2di9a1	118	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	83.88

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0027  Score=43.09  Aligned_cols=33  Identities=21%  Similarity=0.373  Sum_probs=28.8

Q ss_pred             EEEEcCCceeeEEEEEcCCC--CCeEEEEEEEEcc
Q 028178           90 FVFKAPRSGMYQFCFHNPTS--TPEEVSFYIHIGH  122 (212)
Q Consensus        90 ~~f~~~~~G~y~~Cf~n~~~--~~~~V~f~i~~g~  122 (212)
                      =++.++++|.|.+||+|++|  +.|.|.+.+++-.
T Consensus        77 g~~~~~~~G~Y~l~FDNs~S~~~sK~l~Y~i~v~~  111 (119)
T d1olma2          77 GTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLL  111 (119)
T ss_dssp             EEEECCSCEEEEEEEECTTCCCCSEEEEEEEEEEC
T ss_pred             cEEEcCCCEEEEEEEeCCcceEEeeEEEEEEEEEC
Confidence            35888999999999999998  5899999999854

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.18  Score=32.52  Aligned_cols=45  Identities=13%  Similarity=0.206  Sum_probs=33.5

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCC--EEEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGD--KFVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|+.+.-. .....|  ..+|++.+.|.|.+.+.-..
T Consensus        36 ~g~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g   83 (102)
T d2d7ma1          36 EGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGG   83 (102)
T ss_dssp             SSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESS
T ss_pred             CCcEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEEECC
Confidence            4579999999998765543 223345  46899999999999987554

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.42  Score=30.39  Aligned_cols=46  Identities=20%  Similarity=0.237  Sum_probs=34.1

Q ss_pred             CCceeEEEEcCCCceeeeee-cccCCE--EEEEcCCceeeEEEEEcCCC
Q 028178           64 HPGIDFTVTCPDGSIVRALK-GTSGDK--FVFKAPRSGMYQFCFHNPTS  109 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~-~~~~g~--~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ...+++.|.+|+|..+--.. ....|.  .+|++.+.|.|.+.+.-...
T Consensus        33 ~g~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~~g~   81 (99)
T d2d7pa1          33 RGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGA   81 (99)
T ss_dssp             CSCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSC
T ss_pred             CCeEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEECCE
Confidence            45699999999997765443 234564  56889999999999886654

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.41  Score=31.15  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=34.8

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCC--EEEEEcCCceeeEEEEEcCCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGD--KFVFKAPRSGMYQFCFHNPTS  109 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ...+.+.|.+|+|+.+.-. .+...|  ..+|++.+.|.|++.+.-...
T Consensus        35 ~g~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~~~g~   83 (111)
T d2dmba1          35 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGV   83 (111)
T ss_dssp             SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSC
T ss_pred             CCcEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEEECCE
Confidence            4679999999998776543 233455  467899999999999986554

>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.36  Score=29.53  Aligned_cols=47  Identities=13%  Similarity=0.191  Sum_probs=34.0

Q ss_pred             CCCceeEEEEcCCCceeeeee-cccCC--EEEEEcCCceeeEEEEEcCCC
Q 028178           63 DHPGIDFTVTCPDGSIVRALK-GTSGD--KFVFKAPRSGMYQFCFHNPTS  109 (212)
Q Consensus        63 ~~~~i~~~v~~p~g~~v~~~~-~~~~g--~~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      +..++.+.|++|+|..+...- ....|  ..+|++.+.|.|.+=+.....
T Consensus        13 ~~g~l~~~v~~P~G~~~~~~v~~~~dg~y~v~y~P~~~G~h~v~V~~~g~   62 (80)
T d2d7na1          13 QKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGN   62 (80)
T ss_dssp             SSSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSS
T ss_pred             CCCcEEEEEECCCCCEeceEEEECCCCEEEEEEEECCcEEEEEEEEECCE
Confidence            356799999999998755432 23345  567889999999887765543

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.51  Score=30.02  Aligned_cols=45  Identities=11%  Similarity=0.221  Sum_probs=33.0

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCCE--EEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGDK--FVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+++.|.+|+|..+.-+ .....|.  ..|++.+.|.|++-+.-..
T Consensus        35 ~g~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~~~g   82 (101)
T d2dj4a1          35 LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYAD   82 (101)
T ss_dssp             SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESS
T ss_pred             CCCEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            5679999999999875533 2334464  5788999999998886443

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.67  Score=29.09  Aligned_cols=45  Identities=11%  Similarity=0.084  Sum_probs=33.3

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCCE--EEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGDK--FVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+++.|.+|+|..+--. .....|.  ..|++.+.|.|++.+.-..
T Consensus        36 ~g~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~~~g   83 (96)
T d1v05a_          36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence            4569999999998665422 3345564  5789999999999987554

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=1  Score=28.12  Aligned_cols=44  Identities=11%  Similarity=0.203  Sum_probs=32.8

Q ss_pred             CCceeEEEEcCCCceeeeeecccCC--EEEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRALKGTSGD--KFVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|++..+.-.. ...|  ..+|++.+.|.|.+.+.-..
T Consensus        32 ~g~l~v~v~gp~~~~v~v~d-~~dg~y~v~ytP~~~G~y~i~V~~~g   77 (92)
T d2w0pa1          32 AGGLAIAVEGPSKAEISFED-RKDGSCGVAYVVQEPGDYEVSVKFNE   77 (92)
T ss_dssp             SCCEEEEEEESSCCEEEEEE-CTTSCEEEEEECSSCEEEEEEEEETT
T ss_pred             CCceEEEEEeCCceEEEEEE-CCCCEEEEEEEECCCceEEEEEEECC
Confidence            45699999999986664333 3455  45899999999999887544

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.79  Score=28.86  Aligned_cols=42  Identities=12%  Similarity=0.249  Sum_probs=31.7

Q ss_pred             CCceeEEEEcCCCceeeeeecccCCEEEEEcCCceeeEEEEE
Q 028178           64 HPGIDFTVTCPDGSIVRALKGTSGDKFVFKAPRSGMYQFCFH  105 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~  105 (212)
                      ...+.+.|.+|++..+.-..+...-..+|++.+.|.|.+.+.
T Consensus        34 ~~~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~   75 (97)
T d2nqca1          34 SGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIK   75 (97)
T ss_dssp             SCCEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEE
T ss_pred             CCceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEE
Confidence            457999999999876654433222257899999999999985

>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=89.96  E-value=1.1  Score=28.86  Aligned_cols=46  Identities=9%  Similarity=0.099  Sum_probs=33.0

Q ss_pred             CCCceeEEEEcCCCceeeeeecccCCE--EEEEcCCceeeEEEEEcCC
Q 028178           63 DHPGIDFTVTCPDGSIVRALKGTSGDK--FVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        63 ~~~~i~~~v~~p~g~~v~~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ....+.+.|.+|.+++-..-.+...|.  ..|++...|.|.+.+.-..
T Consensus        29 G~~~~~v~i~gp~~~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~g   76 (108)
T d1qfha2          29 GGDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNG   76 (108)
T ss_dssp             CCCCEEEEEEECCSEEEEEEEECSSSEEEEEEEEESSEEEEEEEEETT
T ss_pred             CCCeEEEEEECCCcccccEEEECCCCEEEEEEEECcceeEEEEEEECC
Confidence            345689999999886544434445564  5688999999999888544

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.90  E-value=0.83  Score=28.80  Aligned_cols=45  Identities=9%  Similarity=0.225  Sum_probs=33.9

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCC--EEEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGD--KFVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|+.+.-. .....|  ..+|++.+.|.|++.+.-..
T Consensus        34 ~~~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g   81 (100)
T d2diaa1          34 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGG   81 (100)
T ss_dssp             SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEEECC
Confidence            4679999999998765443 233445  46789999999999998654

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.51  E-value=0.9  Score=28.67  Aligned_cols=44  Identities=16%  Similarity=0.212  Sum_probs=32.0

Q ss_pred             CCceeEEEEcCCCceeeeeecccCC--EEEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRALKGTSGD--KFVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ..++.+.|.+|++..+.-. ....|  ..+|++.+.|.|.+.+.-..
T Consensus        34 ~g~l~v~i~gp~~~~v~v~-~~~dg~y~v~y~P~~~G~y~i~V~~~g   79 (98)
T d2di8a1          34 YGGISLAVEGPSKVDIQTE-DLEDGTCKVSYFPTVPGVYIVSTKFAD   79 (98)
T ss_dssp             BCCEEEEEESSSCCCEECC-BCTTSCEEEEECCCSCSEEEEEEEESS
T ss_pred             CCceEEEEEeCCCceEEEE-ECCCCEEEEEEEECCCceEEEEEEECC
Confidence            4579999999988665433 23345  45689999999999987444

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.50  E-value=1.4  Score=27.60  Aligned_cols=44  Identities=16%  Similarity=0.178  Sum_probs=32.4

Q ss_pred             CCceeEEEEcCCCceeeeeecccCCE--EEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRALKGTSGDK--FVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ..++.+.|.+|++..+--.. ...|.  .+|++.+.|.|.+.+.-..
T Consensus        34 ~g~l~v~v~~p~~~~~~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g   79 (98)
T d2dica1          34 IGGLGITVEGPSESKINCRD-NKDGSCSAEYIPFAPGDYDVNITYGG   79 (98)
T ss_dssp             SSCEEEEEESSSCCCCEEEE-CSSSCEEEEECCSSCEEEEEEEEETT
T ss_pred             CCCcEEEEEeCCCcEEEEEE-CCCCEEEEEEEECCCceEEEEEEECC
Confidence            45699999999987654332 34454  5689999999999987554

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.11  E-value=1.2  Score=27.65  Aligned_cols=43  Identities=9%  Similarity=0.224  Sum_probs=31.5

Q ss_pred             CCceeEEEEcCCCceeeeeecccCCEE--EEEcCCceeeEEEEEcC
Q 028178           64 HPGIDFTVTCPDGSIVRALKGTSGDKF--VFKAPRSGMYQFCFHNP  107 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~~~~g~~--~f~~~~~G~y~~Cf~n~  107 (212)
                      ..++.+.|.+|++..+.-.. ...|.|  +|++.+.|.|.+-+.-.
T Consensus        33 ~g~l~v~v~~p~~~~~~v~~-~~dg~y~v~ytP~~~G~h~i~V~~~   77 (92)
T d2bp3a1          33 EGGLSLAIEGPSKAEISCTD-NQDGTCSVSYLPVLPGDYSILVKYN   77 (92)
T ss_dssp             SEEEEEEEEESSCCEEEEEE-CSSSEEEEEEECSSCEEEEEEEEET
T ss_pred             CCceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCccEEEEEEEC
Confidence            45688999999987665443 345654  69999999999877543

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.46  E-value=0.24  Score=30.94  Aligned_cols=45  Identities=16%  Similarity=0.122  Sum_probs=30.6

Q ss_pred             CCceeEEEEcCCCceeeeeec-ccCCE--EEEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRALKG-TSGDK--FVFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~-~~~g~--~~f~~~~~G~y~~Cf~n~~  108 (212)
                      ..++.+.|.+|+|+.+-.... ...|.  ..|++.+.|.|.+-+.-..
T Consensus        23 ~g~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~~~g   70 (88)
T d2j3sa2          23 IQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKG   70 (88)
T ss_dssp             CCCEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEEECC
Confidence            456999999999987654322 23454  4688999999998887554

>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.63  E-value=1.9  Score=27.20  Aligned_cols=45  Identities=22%  Similarity=0.415  Sum_probs=32.9

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCCEE--EEEcCCceeeEEEEEcCC
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGDKF--VFKAPRSGMYQFCFHNPT  108 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g~~--~f~~~~~G~y~~Cf~n~~  108 (212)
                      ...+.+.|.+|+|..+... .+...|.|  +|++...|.|.+-+.-..
T Consensus        43 g~~~~v~v~~p~g~~~~~~v~d~~dGtY~v~y~p~~~G~~~i~V~~~g   90 (104)
T d1qfha1          43 GDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRG   90 (104)
T ss_dssp             CCCEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEETT
T ss_pred             CceeEEEEECCCCCEEeeEEEECCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            4569999999998766543 23345654  688999999999887554

>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.24  E-value=0.52  Score=30.02  Aligned_cols=42  Identities=14%  Similarity=0.222  Sum_probs=30.5

Q ss_pred             CCceeEEEEcCCCceeeee-ecccCCE--EEEEcCCceeeEEEEE
Q 028178           64 HPGIDFTVTCPDGSIVRAL-KGTSGDK--FVFKAPRSGMYQFCFH  105 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~  105 (212)
                      ..++.+.|++|+|..+--. .....|.  .+|++.+.|.|.+=+.
T Consensus        37 ~g~l~v~v~~P~g~~v~~~v~~~~dg~y~v~f~P~~~G~h~i~V~   81 (103)
T d2dmca1          37 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIK   81 (103)
T ss_dssp             STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECB
T ss_pred             CCcEEEEEECCCCCEeccEEEECCCCEEEEEEEeCCceeEEEEEE
Confidence            4579999999999876432 2334564  4688999999987554

>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.05  E-value=0.45  Score=31.08  Aligned_cols=47  Identities=9%  Similarity=0.139  Sum_probs=34.2

Q ss_pred             CCCceeEEEEcCCCceeeee-ecccCCE--EEEEcCCceeeEEEEEcCCC
Q 028178           63 DHPGIDFTVTCPDGSIVRAL-KGTSGDK--FVFKAPRSGMYQFCFHNPTS  109 (212)
Q Consensus        63 ~~~~i~~~v~~p~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ....+++.|.+|+|..+--. .+...|.  .+|++.+.|.|++.+.-...
T Consensus        48 G~~~l~v~v~~p~g~~v~~~v~~~~dG~y~v~y~P~~~G~~~i~V~~~g~   97 (115)
T d2diba1          48 GGDHIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDV   97 (115)
T ss_dssp             CCSCCCEECCCSSSCCCCCEEEECSSSEEEEEECCSSCSEEEEEEBSSSC
T ss_pred             CCccEEEEEEeCCCCEeeeEEEECCCCEEEEEEEeCCCEeEEEEEEECCE
Confidence            35679999999998765432 2334564  57889999999999875543

>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.88  E-value=2.7  Score=27.11  Aligned_cols=45  Identities=13%  Similarity=0.204  Sum_probs=33.5

Q ss_pred             CCceeEEEEcCCCceeeeeecccCCE--EEEEcCCceeeEEEEEcCCC
Q 028178           64 HPGIDFTVTCPDGSIVRALKGTSGDK--FVFKAPRSGMYQFCFHNPTS  109 (212)
Q Consensus        64 ~~~i~~~v~~p~g~~v~~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~~  109 (212)
                      ..++.+.|.+|++..+.-. ....|.  .+|++.+.|.|.+.+.-...
T Consensus        54 ~g~l~v~i~~p~~~~~~v~-~~~dG~y~v~ytP~~~G~y~i~V~~~g~  100 (118)
T d2di9a1          54 TGGLGLTVEGPCEAKIECS-DNGDGTCSVSYLPTKPGEYFVNILFEEV  100 (118)
T ss_dssp             SSCEEEEECSSSCCEEEEE-ECSSSEEEEEEECSSSSEEEEEEEESSC
T ss_pred             CCccEEEEecCCceEEEEE-ECCCCEEEEEEEeCCcEeEEEEEEECCE
Confidence            4579999999998765433 334564  57899999999999986553