Citrus Sinensis ID: 028181

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
MRQLTYRRKLYGPQPGPLAEGKSVKRSRTQKDYSNSGKGGVKKWLPISGHRRTTNSFWTKKTWMWRNLLTEKRASLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLS
cccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHcHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHccccccccccc
cccEEEEHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHcccHHHHHccc
mrqltyrrklygpqpgplaegksvkrsrtqkdysnsgkggvkkwlpisghrrttnsfwTKKTWMWRNLLTEKRASLLKITsslrcrcptIYRNLAQHVKVRQRVVATAVTYMRRCytrksmteydphlvaptclylasKAEESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAgmndinmthls
mrqltyrrklygpqpgplaegksvkrsrtqkdysnsgkggvkkwlpisghrrttnsfwtkktWMWRNLLTEKRASLLKITSSLRCRCPTIYrnlaqhvkvrqrvVATAVTYMRRCYtrksmteydphLVAPTCLYLASKAEESTVQARLLVFYIKkiysdekyrYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLS
MRQLTYRRKLYGPQPGPLAEGKSVKRSRTQKDYSNSGKGGVKKWLPISGHRRTTNSFWTKKTWMWRNLLTEKRASLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLS
****************************************VKKWLPISGHRRTTNSFWTKKTWMWRNLLTEKRASLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGM*********
******R**************************************************WT**TW**************KITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI******
MRQLTYRRKLYGPQPGP**********************GVKKWLPISGHRRTTNSFWTKKTWMWRNLLTEKRASLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLS
*RQLTYRRKLYGPQPGPLA**********************KKWLPISGHRRTTNSFWTKKTWMWRNLLTEKRASLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMND*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MRQLTYRRKLYGPQPGPLAEGKSVKRSRTQKDYSNSGKGGVKKWLPISGHRRTTNSFWTKKTWMWRNLLTEKRASLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query212 2.2.26 [Sep-21-2011]
Q9FJK7253 Cyclin-C1-2 OS=Arabidopsi yes no 0.561 0.470 0.798 2e-53
P93411257 Cyclin-C1-1 OS=Oryza sati yes no 0.537 0.443 0.817 2e-48
Q9FJK6253 Cyclin-C1-1 OS=Arabidopsi no no 0.561 0.470 0.747 9e-48
Q86KE7255 Cyclin-C OS=Dictyostelium yes no 0.533 0.443 0.417 9e-22
P39947 278 Cyclin-C OS=Rattus norveg yes no 0.716 0.546 0.355 1e-20
Q62447 283 Cyclin-C OS=Mus musculus yes no 0.721 0.540 0.352 7e-20
P55168 283 Cyclin-C OS=Gallus gallus yes no 0.721 0.540 0.352 1e-19
P24863 283 Cyclin-C OS=Homo sapiens yes no 0.721 0.540 0.352 1e-19
Q3ZCK5 283 Cyclin-C OS=Bos taurus GN yes no 0.721 0.540 0.347 1e-19
Q28F72 283 Cyclin-C OS=Xenopus tropi yes no 0.721 0.540 0.352 2e-19
>sp|Q9FJK7|CCC12_ARATH Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1 Back     alignment and function desciption
 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 95/119 (79%), Positives = 112/119 (94%)

Query: 94  LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
           LAQH+K+RQRVVATAVTYMRR YTRKS+TEY+P LVAPTCLYLA KAEES V A+LLVFY
Sbjct: 51  LAQHIKIRQRVVATAVTYMRRVYTRKSLTEYEPRLVAPTCLYLACKAEESVVHAKLLVFY 110

Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLS 212
           +KK+Y+DEK+RYE+KDILEMEMK+LEALN+YLVVFHPYRSL +FLQD+G+ND +MTHL+
Sbjct: 111 MKKLYADEKFRYEIKDILEMEMKVLEALNFYLVVFHPYRSLPEFLQDSGINDTSMTHLT 169

Arabidopsis thaliana (taxid: 3702)
>sp|P93411|CCC11_ORYSJ Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2 SV=1 Back     alignment and function description
>sp|Q9FJK6|CCC11_ARATH Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2 Back     alignment and function description
>sp|Q86KE7|CCNC_DICDI Cyclin-C OS=Dictyostelium discoideum GN=cycC PE=3 SV=1 Back     alignment and function description
>sp|P39947|CCNC_RAT Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2 Back     alignment and function description
>sp|Q62447|CCNC_MOUSE Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=4 Back     alignment and function description
>sp|P55168|CCNC_CHICK Cyclin-C OS=Gallus gallus GN=CCNC PE=2 SV=1 Back     alignment and function description
>sp|P24863|CCNC_HUMAN Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2 Back     alignment and function description
>sp|Q3ZCK5|CCNC_BOVIN Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1 Back     alignment and function description
>sp|Q28F72|CCNC_XENTR Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
356567806253 PREDICTED: cyclin-C1-2-like isoform 1 [G 0.561 0.470 0.865 4e-54
356567808237 PREDICTED: cyclin-C1-2-like isoform 2 [G 0.561 0.502 0.865 4e-54
356527332237 PREDICTED: cyclin-C1-2-like [Glycine max 0.561 0.502 0.873 4e-54
224065411251 predicted protein [Populus trichocarpa] 0.561 0.474 0.882 2e-53
449497213264 PREDICTED: cyclin-C1-1-like [Cucumis sat 0.561 0.450 0.865 2e-53
449459194253 PREDICTED: cyclin-C1-1-like [Cucumis sat 0.561 0.470 0.865 2e-53
255637731237 unknown [Glycine max] 0.561 0.502 0.865 4e-53
224129568251 predicted protein [Populus trichocarpa] 0.561 0.474 0.848 4e-53
357505151249 Cyclin-C1-2 [Medicago truncatula] gi|355 0.561 0.477 0.857 9e-53
217071926249 unknown [Medicago truncatula] gi|3884917 0.561 0.477 0.857 1e-52
>gi|356567806|ref|XP_003552106.1| PREDICTED: cyclin-C1-2-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 103/119 (86%), Positives = 112/119 (94%)

Query: 94  LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
           LAQ VKVRQRVVATA+TYMRR YTRKSMTEYDP LVAPTCLYLASKAEESTVQARLLVFY
Sbjct: 51  LAQQVKVRQRVVATAITYMRRVYTRKSMTEYDPRLVAPTCLYLASKAEESTVQARLLVFY 110

Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLS 212
           IKK+Y+D+KYRYE+KDILEMEMKILEALNYYLVV+HPYRSL   LQDAG+ND+NMT L+
Sbjct: 111 IKKLYTDDKYRYEIKDILEMEMKILEALNYYLVVYHPYRSLSPLLQDAGLNDLNMTQLT 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356567808|ref|XP_003552107.1| PREDICTED: cyclin-C1-2-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356527332|ref|XP_003532265.1| PREDICTED: cyclin-C1-2-like [Glycine max] Back     alignment and taxonomy information
>gi|224065411|ref|XP_002301804.1| predicted protein [Populus trichocarpa] gi|222843530|gb|EEE81077.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449497213|ref|XP_004160343.1| PREDICTED: cyclin-C1-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449459194|ref|XP_004147331.1| PREDICTED: cyclin-C1-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255637731|gb|ACU19188.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224129568|ref|XP_002320618.1| predicted protein [Populus trichocarpa] gi|118488435|gb|ABK96032.1| unknown [Populus trichocarpa] gi|222861391|gb|EEE98933.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357505151|ref|XP_003622864.1| Cyclin-C1-2 [Medicago truncatula] gi|355497879|gb|AES79082.1| Cyclin-C1-2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|217071926|gb|ACJ84323.1| unknown [Medicago truncatula] gi|388491728|gb|AFK33930.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
TAIR|locus:2152556253 AT5G48640 [Arabidopsis thalian 0.561 0.470 0.747 3.1e-44
DICTYBASE|DDB_G0274139255 cycC "putative C-type cyclin" 0.566 0.470 0.409 4.3e-22
RGD|70905 278 Ccnc "cyclin C" [Rattus norveg 0.702 0.535 0.363 5.5e-22
UNIPROTKB|P39947 278 Ccnc "Cyclin-C" [Rattus norveg 0.702 0.535 0.363 5.5e-22
UNIPROTKB|F1RXY0 282 CCNC "Uncharacterized protein" 0.712 0.535 0.353 1.5e-21
MGI|MGI:1858199 283 Ccnc "cyclin C" [Mus musculus 0.712 0.533 0.351 1.9e-21
UNIPROTKB|F1LNZ0 333 Ccnc "Cyclin-C" [Rattus norveg 0.712 0.453 0.351 1.9e-21
UNIPROTKB|P55168 283 CCNC "Cyclin-C" [Gallus gallus 0.712 0.533 0.351 3e-21
UNIPROTKB|Q3ZCK5 283 CCNC "Cyclin-C" [Bos taurus (t 0.712 0.533 0.345 3e-21
UNIPROTKB|E5RFK5 282 CCNC "Cyclin-C" [Homo sapiens 0.712 0.535 0.351 3e-21
TAIR|locus:2152556 AT5G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 89/119 (74%), Positives = 104/119 (87%)

Query:    94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
             LAQH+KVRQRVVATA+TYMRR Y RKSM E++P LVA TCLYLASKAEES VQAR LVFY
Sbjct:    51 LAQHIKVRQRVVATAITYMRRVYIRKSMVEFEPRLVALTCLYLASKAEESIVQARNLVFY 110

Query:   154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLS 212
             IK++Y DE  +YE+KDIL MEMK+LEAL+YYLVVFHPYRSL +FLQDA +ND+NM  ++
Sbjct:   111 IKRLYPDEYNKYELKDILGMEMKVLEALDYYLVVFHPYRSLSEFLQDAALNDVNMNQIT 169
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=IEA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA;ISS
GO:0010440 "stomatal lineage progression" evidence=RCA
DICTYBASE|DDB_G0274139 cycC "putative C-type cyclin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|70905 Ccnc "cyclin C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P39947 Ccnc "Cyclin-C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RXY0 CCNC "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1858199 Ccnc "cyclin C" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1LNZ0 Ccnc "Cyclin-C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P55168 CCNC "Cyclin-C" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCK5 CCNC "Cyclin-C" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E5RFK5 CCNC "Cyclin-C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P93411CCC11_ORYSJNo assigned EC number0.81730.53770.4435yesno
Q9FJK7CCC12_ARATHNo assigned EC number0.79830.56130.4703yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_II1144
hypothetical protein (251 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
COG5333 297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 2e-24
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 2e-18
TIGR00569 305 TIGR00569, ccl1, cyclin ccl1 2e-14
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 1e-13
cd0004388 cd00043, CYCLIN, Cyclin box fold 2e-13
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score = 97.5 bits (243), Expect = 2e-24
 Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 1/125 (0%)

Query: 76  LLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLY 135
            L+   +L      +  +L   + + Q V+ATA+ +  R Y + S+ E   + V  TC+Y
Sbjct: 37  TLEKELNLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVY 96

Query: 136 LASKAEESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLV 195
           LA K E++     +  F  + ++S+E      + ILE E ++LEAL++ L V HPY+ L 
Sbjct: 97  LACKVEDTPRDISIESFEARDLWSEEPKSSR-ERILEYEFELLEALDFDLHVHHPYKYLE 155

Query: 196 QFLQD 200
            FL+D
Sbjct: 156 GFLKD 160

Length = 297
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1 Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 212
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 100.0
KOG0834 323 consensus CDK9 kinase-activating protein cyclin T 99.98
TIGR00569 305 ccl1 cyclin ccl1. University). 99.96
KOG0835 367 consensus Cyclin L [General function prediction on 99.91
COG5333 297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.9
KOG2496 325 consensus Cdk activating kinase (CAK)/RNA polymera 99.79
KOG0656 335 consensus G1/S-specific cyclin D [Cell cycle contr 99.76
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.73
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.66
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.52
KOG0653 391 consensus Cyclin B and related kinase-activating p 99.47
KOG0655 408 consensus G1/S-specific cyclin E [Cell cycle contr 99.44
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.42
COG5024 440 Cyclin [Cell division and chromosome partitioning] 99.37
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.27
KOG1597308 consensus Transcription initiation factor TFIIB [T 99.27
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 98.94
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 98.64
PRK00423310 tfb transcription initiation factor IIB; Reviewed 98.4
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 97.92
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 97.71
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 97.49
KOG1598 521 consensus Transcription initiation factor TFIIIB, 97.06
KOG1597308 consensus Transcription initiation factor TFIIB [T 96.79
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 94.27
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 93.59
KOG0835367 consensus Cyclin L [General function prediction on 89.81
KOG1674218 consensus Cyclin [General function prediction only 86.28
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 86.26
KOG1598 521 consensus Transcription initiation factor TFIIIB, 85.07
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-37  Score=259.38  Aligned_cols=159  Identities=48%  Similarity=0.815  Sum_probs=138.9

Q ss_pred             ccccccccc---ccch-HHhH-hHHhhcccccCHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCC
Q 028181           53 TTNSFWTKK---TWMW-RNLL-TEKRASLLKITSSL----RCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTE  123 (212)
Q Consensus        53 ~a~~fw~s~---~W~f-~e~l-~~~r~~~~~~~~e~----r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~  123 (212)
                      ||+|||+|+   ||+| ++.| .++..|...++.++    +..+.++|+.+|++++|+|+|+|||++||+|||.+.|+++
T Consensus         1 MA~NFW~SSh~~qwl~dk~el~k~r~~D~r~l~~d~~~~l~i~~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S~k~   80 (264)
T KOG0794|consen    1 MAGNFWTSSHYQQWLLDKTELLKERQLDLRGLSEDEYSKLKIFMANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKSLKE   80 (264)
T ss_pred             CCcchhhhhhhhhHhcCHHHHhhhccchhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            899999996   8999 4444 44444545555543    4456899999999999999999999999999999999999


Q ss_pred             CCchhhhHHHHHHhhccCCCC-ccHHHHHHHHHHhc-----ccccccccHHHHHHHHHHHHHHcCCcceecChHHHHHHH
Q 028181          124 YDPHLVAPTCLYLASKAEEST-VQARLLVFYIKKIY-----SDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQF  197 (212)
Q Consensus       124 ~~~~lvaaAcLfLA~KvEE~~-~~i~~ii~~~~~~~-----~d~~~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L~~~  197 (212)
                      ++|.++|+||||||||+||++ ..++.++..++.+.     .++.++++..+|.++|+.||+.|++.|.|.|||+.|.++
T Consensus        81 ~~p~lla~TClyLAcKvEE~~i~~~r~l~~~a~~L~~~f~~~~e~~~~~~~~I~e~Ef~llE~Ld~~LIVhHPYrsL~q~  160 (264)
T KOG0794|consen   81 IEPRLLAPTCLYLACKVEECPIVHIRLLVNEAKVLKTRFSYWPEKFPYERKDILEMEFYLLEALDCYLIVHHPYRSLLQF  160 (264)
T ss_pred             cCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcccchhhcCCCcCcchhhhhhHHhhhceeEEEecCCccHHHH
Confidence            999999999999999999998 67899999887762     466778888999999999999999999999999999999


Q ss_pred             HHHcCCCCcccccC
Q 028181          198 LQDAGMNDINMTHL  211 (212)
Q Consensus       198 l~~l~l~~~~~~~~  211 (212)
                      +++.|+++.++.|+
T Consensus       161 ~qd~gi~d~~~l~~  174 (264)
T KOG0794|consen  161 VQDMGINDQKLLQL  174 (264)
T ss_pred             HHHhcccchhhhhh
Confidence            99999988877765

>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
3rgf_B 285 Crystal Structure Of Human Cdk8CYCC Length = 285 7e-21
1zp2_A235 Structure Of The Mediator Subunit Cyclin C Length = 6e-11
3tnh_B259 Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 1e-10
3mi9_B266 Crystal Structure Of Hiv-1 Tat Complexed With Human 1e-10
1kxu_A 333 Cyclin H, A Positive Regulatory Subunit Of Cdk Acti 2e-10
2pk2_A 358 Cyclin Box Structure Of The P-Tefb Subunit Cyclin T 2e-10
1jkw_A 323 Structure Of Cyclin Mcs2 Length = 323 2e-10
2w2h_A264 Structural Basis Of Transcription Activation By The 4e-10
3blh_B260 Crystal Structure Of Human Cdk9CYCLINT1 Length = 26 6e-10
2ivx_A257 Crystal Structure Of Human Cyclin T2 At 1.8 A Resol 8e-09
2i53_A258 Crystal Structure Of Cyclin K Length = 258 3e-05
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC Length = 285 Back     alignment and structure 
Iteration: 1

 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 17/173 (9%)
Query: 51  RRTTNSFWTKKTWM-W----RNLLTEKRASLLKITSS----LRCRCPTIYRNLAQHVKVR 101
           +    +FW    ++ W    ++LL E++  L  ++      L+     + + L +H+K+R
Sbjct: 1   KAMAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLR 60
Query: 102 QRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLL-----VFYI 154
           Q+V+ATA  Y +R Y R S+   DP L+APTC++LASK EE  V    RL+     V   
Sbjct: 61  QQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKT 120
Query: 155 KKIYSDEK-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206
           +  Y+  K + Y +  ILE E  +LE ++  L+V+HPYR L+Q++QD G  D+
Sbjct: 121 RFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM 173
>pdb|1ZP2|A Chain A, Structure Of The Mediator Subunit Cyclin C Length = 235 Back     alignment and structure
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 Back     alignment and structure
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 266 Back     alignment and structure
>pdb|1KXU|A Chain A, Cyclin H, A Positive Regulatory Subunit Of Cdk Activating Kinase Length = 333 Back     alignment and structure
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1 Derived From A Fusion Complex With Eiav Tat Length = 358 Back     alignment and structure
>pdb|1JKW|A Chain A, Structure Of Cyclin Mcs2 Length = 323 Back     alignment and structure
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin T1-Tat-Tar Rna Complex From Eiav Length = 264 Back     alignment and structure
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 Length = 260 Back     alignment and structure
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution (Casp Target) Length = 257 Back     alignment and structure
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 5e-29
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 5e-28
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 9e-28
3rgf_B 285 Cyclin-C; protein kinase complex, transferase,tran 3e-27
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 3e-26
2ivx_A257 Cyclin-T2; transcription regulation, cell division 5e-23
3g33_B 306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 9e-10
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 4e-09
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 5e-09
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 6e-08
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 6e-08
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 8e-08
1w98_B 283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 2e-07
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 2e-06
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 7e-04
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
 Score =  108 bits (270), Expect = 5e-29
 Identities = 23/134 (17%), Positives = 58/134 (43%), Gaps = 4/134 (2%)

Query: 82  SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
             R        ++   + +    +AT + Y  R Y   S  ++  ++    CL+LA K E
Sbjct: 39  RYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVE 98

Query: 142 ESTVQARLLVFYIKKIY----SDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQF 197
           E+  + + ++   + +       +      ++++ +E  +L+ + + L V HPY+ L+++
Sbjct: 99  ETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKY 158

Query: 198 LQDAGMNDINMTHL 211
            +    +   +  L
Sbjct: 159 AKQLKGDKNKIQKL 172
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
3rgf_B 285 Cyclin-C; protein kinase complex, transferase,tran 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.97
2ivx_A257 Cyclin-T2; transcription regulation, cell division 99.96
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.96
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 99.95
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.95
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.91
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 99.89
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 99.89
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 99.89
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 99.88
3g33_B 306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 99.87
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 99.87
1w98_B 283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.86
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 99.85
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.83
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.74
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.56
1ais_B200 TFB TFIIB, protein (transcription initiation facto 98.61
1c9b_A207 General transcription factor IIB; protein-DNA comp 98.26
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.57
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 96.94
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 96.83
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 95.64
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 95.41
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 94.78
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 94.72
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 94.64
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 94.01
2ivx_A257 Cyclin-T2; transcription regulation, cell division 93.75
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 93.33
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 91.87
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 91.64
3m03_A95 ORC6, origin recognition complex subunit 6; helix 91.34
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 91.2
3h4c_A 260 Transcription factor TFIIB-like; cyclin, transcrip 89.7
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 87.78
2qdj_A 304 Retinoblastoma-associated protein; cyclin fold, cy 86.1
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 83.29
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=6.1e-34  Score=248.01  Aligned_cols=154  Identities=36%  Similarity=0.669  Sum_probs=133.5

Q ss_pred             cccccccccc---ccch-HHhHhHHhhccc-ccCH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCC
Q 028181           52 RTTNSFWTKK---TWMW-RNLLTEKRASLL-KITS----SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMT  122 (212)
Q Consensus        52 ~~a~~fw~s~---~W~f-~e~l~~~r~~~~-~~~~----e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~  122 (212)
                      .||+|||+|+   +|+| +++|...|.++. ..++    .+|..+++||.++|..|+|++.|++||++||||||+++++.
T Consensus         2 ~m~~~~w~Ss~~~~Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~   81 (285)
T 3rgf_B            2 AMAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLK   81 (285)
T ss_dssp             TTTTCGGGSHHHHHHSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred             CccchhhcccccCCcCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCch
Confidence            3999999995   7999 788877766443 3333    24778899999999999999999999999999999999999


Q ss_pred             CCCchhhhHHHHHHhhccCCCCcc-HHHHHHHHHHhc-------ccccccccHHHHHHHHHHHHHHcCCcceecChHHHH
Q 028181          123 EYDPHLVAPTCLYLASKAEESTVQ-ARLLVFYIKKIY-------SDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSL  194 (212)
Q Consensus       123 ~~~~~lvaaAcLfLA~KvEE~~~~-i~~ii~~~~~~~-------~d~~~~~~~~~I~~~E~~LL~~L~Fdl~v~~P~~~L  194 (212)
                      +++++++++||||||||+||++++ +++|+.++..+.       .++.+.++.++|+++|+.||++|||++.++|||+||
T Consensus        82 ~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL  161 (285)
T 3rgf_B           82 SIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPL  161 (285)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHH
T ss_pred             hcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHH
Confidence            999999999999999999999984 899998775431       133345678999999999999999999999999999


Q ss_pred             HHHHHHcCCCC
Q 028181          195 VQFLQDAGMND  205 (212)
Q Consensus       195 ~~~l~~l~l~~  205 (212)
                      .+|++.++.+.
T Consensus       162 ~~~~~~l~~~~  172 (285)
T 3rgf_B          162 LQYVQDMGQED  172 (285)
T ss_dssp             HHHHHHHTCHH
T ss_pred             HHHHHHhCCCH
Confidence            99999999754
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens} Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 212
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 3e-22
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 7e-20
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 1e-19
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 2e-13
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 3e-10
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 6e-10
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 3e-09
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 4e-09
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin H (mcs2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (213), Expect = 3e-22
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 97  HVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKK 156
              + + VV TA  Y +R Y   S+ EY P ++  TC +LA K +E  V +   V  +++
Sbjct: 62  KPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRE 121

Query: 157 IYSDEKYRYEVKDILEMEMKILEALNYYLVV 187
                     ++ ILE E+ +++ LN++L+V
Sbjct: 122 SPLG--QEKALEQILEYELLLIQQLNFHLIV 150
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.96
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.95
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.9
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.73
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.72
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.72
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.7
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.67
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 99.34
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 99.23
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 99.1
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.9
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 96.62
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 95.44
d2r7ga2142 Retinoblastoma tumor suppressor domains {Human (Ho 85.16
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 80.88
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-29  Score=196.06  Aligned_cols=128  Identities=22%  Similarity=0.465  Sum_probs=109.6

Q ss_pred             ccccch-HHhHhH--HhhcccccCH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCCCchhhhHHHH
Q 028181           60 KKTWMW-RNLLTE--KRASLLKITS--SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCL  134 (212)
Q Consensus        60 s~~W~f-~e~l~~--~r~~~~~~~~--e~r~~~~~~I~~l~~~L~L~~~t~aTA~vyf~RFy~~~s~~~~~~~lvaaAcL  134 (212)
                      +++|+| +++|..  .|.++.+.+.  ..|..+++||.++|.+|+||+.|++||++||||||+++++.+++++++|+|||
T Consensus         2 ~~~w~~t~~~l~~~pS~~~gi~~~~E~~~R~~~~~~i~~~~~~l~l~~~t~~~A~~l~~Rf~~~~s~~~~~~~~va~acl   81 (143)
T d2ivxa1           2 SSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTAL   81 (143)
T ss_dssp             CGGGSCCHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred             CCCCCCCHHHHHhCcccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHH
Confidence            589999 777754  5666554443  35889999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCccHHHHHHHHHHhccc---------ccccccHHHHHHHHHHHHHHcCCccee
Q 028181          135 YLASKAEESTVQARLLVFYIKKIYSD---------EKYRYEVKDILEMEMKILEALNYYLVV  187 (212)
Q Consensus       135 fLA~KvEE~~~~i~~ii~~~~~~~~d---------~~~~~~~~~I~~~E~~LL~~L~Fdl~v  187 (212)
                      |||||+||+++++++++.+++.+.+.         +.+.+..++|+.+|+.||++||||++|
T Consensus        82 ~LA~K~eE~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~Fdl~V  143 (143)
T d2ivxa1          82 FLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITI  143 (143)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             HHHHHhccccccHHHHHHHHHHHhcccchhhhhchhhhHHHHHHHHHHHHHHHHHcCCeeeC
Confidence            99999999999999999998765521         112234689999999999999999986
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2r7ga2 a.74.1.3 (A:644-785) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure