Citrus Sinensis ID: 028203

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccEEEEEccccEEEcccHHHHHHHHHHHcHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccEEEEEccccEEEEcccHHHHHHHHHHHccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKlqvhppeiivdhhiylppgpghhnahgpscsggvvvasrdgkivCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Flexible Loop (DISEMBL)
mndadvskqIQQMVRFIRQEAEEKANeisvsaeeefnieklqlveAEKKKIRqeyerkekqveiRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Low Complexity Region (SEG)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLppgpghhnahgpSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Disordered region (IsUnstruct)
*******************************************************************IEYSMQLNASRIKVLQAQDDLV********KEVLNSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI**********
Disordered Region (DISOPRED)
*N*AD*SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKI*******************************QAQDDLVSNMMEAASKEVLNSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ***
Disordered Region (DISEMBL)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRK********
Disordered Region (DISPRO)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH****GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNxxxxxxxxxxxxxxxxxxxxxxxxVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q9SWE7	230	V-type proton ATPase subu	N/A	no	1.0	0.921	0.921	1e-116
Q9MB46	230	V-type proton ATPase subu	N/A	no	1.0	0.921	0.921	1e-116
O23948	237	V-type proton ATPase subu	N/A	no	0.995	0.890	0.760	2e-91
Q41396	229	V-type proton ATPase subu	N/A	no	0.995	0.921	0.739	3e-88
Q39258	230	V-type proton ATPase subu	yes	no	1.0	0.921	0.7	1e-85
P0CAN7	237	V-type proton ATPase subu	no	no	1.0	0.894	0.673	2e-83
Q40272	226	V-type proton ATPase subu	N/A	no	0.976	0.915	0.716	2e-82
Q9C9Z8	235	V-type proton ATPase subu	no	no	0.981	0.885	0.631	3e-74
P31402	226	V-type proton ATPase subu	N/A	no	0.933	0.876	0.400	2e-35
P50518	226	V-type proton ATPase subu	yes	no	0.919	0.862	0.394	1e-34

>sp|Q9SWE7|VATE_CITLI V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1

 Score =  417 bits (1071), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/230 (92%), Positives = 212/230 (92%), Gaps = 18/230 (7%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN                  
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 162
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 163 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212
           AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Citrus limon (taxid: 2708)

>sp|Q9MB46|VATE_CITUN V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1

 Score =  417 bits (1071), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/230 (92%), Positives = 212/230 (92%), Gaps = 18/230 (7%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN                  
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 162
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 163 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212
           AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Citrus unshiu (taxid: 55188)

>sp|O23948|VATE_GOSHI V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1

 Score =  335 bits (859), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 181/238 (76%), Positives = 194/238 (81%), Gaps = 27/238 (11%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           M+DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           QVEIRKKIEYSMQLNASRIKVLQAQDD+V+ M E+ASK+ LN                  
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQ 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHH- 161
           SL+RLKEP VLLRCRK+D HLVESVL+SAKEEYA K+ VHPPEIIVD  ++LPPGP HH 
Sbjct: 121 SLVRLKEPGVLLRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVD-DVHLPPGPSHHH 179

Query: 162 -------NAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212
                   AHGP CSGGVV+ASRDGKIV ENTLDARLDV F KKLPEIRK L  QVAA
Sbjct: 180 GFFHHHAEAHGPFCSGGVVIASRDGKIVFENTLDARLDVAFNKKLPEIRKWLFGQVAA 237

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Gossypium hirsutum (taxid: 3635)

>sp|Q41396|VATE_SPIOL V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1

 Score =  324 bits (830), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 170/230 (73%), Positives = 187/230 (81%), Gaps = 19/230 (8%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DV KQIQQMVRFIRQEAEEKANEISV+AEEEFNIEKLQLVEAEKKKIR EYERKEK
Sbjct: 1   MNDTDVQKQIQQMVRFIRQEAEEKANEISVAAEEEFNIEKLQLVEAEKKKIRPEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVL------------------N 102
           QV++R+KIEYSMQLNASRIKVLQAQDDLV++M E A+KE+L                   
Sbjct: 61  QVQVRRKIEYSMQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQ 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 162
           SLLRL+EP VLLRCR+DD HLVE VL SAKEEYA+K +VH PEIIVD  I+LP GP HH 
Sbjct: 121 SLLRLREPGVLLRCREDDVHLVEHVLNSAKEEYAEKAEVHTPEIIVD-SIHLPAGPSHHK 179

Query: 163 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212
            HG  CSGGVV+ASRDGKIV ENTLDARL+V FRKKLP+IRKQL +  AA
Sbjct: 180 EHGLHCSGGVVLASRDGKIVFENTLDARLEVAFRKKLPQIRKQLFAVAAA 229

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Spinacia oleracea (taxid: 3562)

>sp|Q39258|VATE1_ARATH V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2

 Score =  315 bits (808), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 184/230 (80%), Gaps = 18/230 (7%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEK
Sbjct: 1   MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           Q ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LN                  
Sbjct: 61  QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 162
            LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD  I+LPP P  ++
Sbjct: 121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSND 180

Query: 163 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212
            HG  CSGGVV+ASRDGKIVCENTLDARLDV FR KLP IRK L  QV A
Sbjct: 181 PHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQVTA 230

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. Required for Golgi organization and vacuole function in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CAN7|VATE3_ARATH V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1

 Score =  308 bits (789), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/236 (67%), Positives = 183/236 (77%), Gaps = 24/236 (10%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVL------------------- 101
           QV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L                   
Sbjct: 61  QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120

Query: 102 -----NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPP 156
                  LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+LPP
Sbjct: 121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPP 180

Query: 157 GPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212
            P   + H  SC+GGVV+ASRDGKIVCENTLDARL+V FR KLPEIRK L  +V A
Sbjct: 181 APSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSLFGKVGA 236

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40272|VATE_MESCR V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1

 Score =  305 bits (781), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 162/226 (71%), Positives = 181/226 (80%), Gaps = 19/226 (8%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DV  QIQQMVRF+RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK K
Sbjct: 1   MNDTDVQNQIQQMVRFMRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKAK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVL------------------N 102
           QV++R+KIEYSMQLNASRIKVLQAQDDLV+ M EAASKE+L                   
Sbjct: 61  QVDVRRKIEYSMQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQ 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 162
           SLLRLKEPAVLLRCR++D H V  VL SA+EEY +K  V  PE+IVD  I+LPP P  ++
Sbjct: 121 SLLRLKEPAVLLRCREEDKHHVHRVLHSAREEYGEKACVSHPEVIVD-DIHLPPAPTSYD 179

Query: 163 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 208
           +H  SCSGGVV+ASRDGKIV ENTLDARL+V FRKKLP+IRKQL +
Sbjct: 180 SHELSCSGGVVMASRDGKIVFENTLDARLEVAFRKKLPQIRKQLFA 225

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|Q9C9Z8|VATE2_ARATH V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1

 Score =  278 bits (710), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 144/228 (63%), Positives = 180/228 (78%), Gaps = 20/228 (8%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK K
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           QV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L                   
Sbjct: 61  QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY--LPPGPGH 160
           SLLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I +D  ++   PP P  
Sbjct: 121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKL 180

Query: 161 HNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 208
            ++H P CSGGVV+AS+DGKIVCENTLDARLDV FR+KLP+IR +LV 
Sbjct: 181 PDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQIRTRLVG 228

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|P31402|VATE_MANSE V-type proton ATPase subunit E OS=Manduca sexta GN=VHA26 PE=2 SV=1

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/227 (40%), Positives = 141/227 (62%), Gaps = 29/227 (12%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEK 62

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE------------------VLN 102
           QVE++KKI+ S  LN +R+KVL+ ++D V N+++ A K                   ++ 
Sbjct: 63  QVELQKKIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDIKLYSDLLVTLIVQ 122

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 162
           +L +L EP V LR R+ D  LVES+L  A+++Y  K++     + +D+  +LPP      
Sbjct: 123 ALFQLVEPTVTLRVRQADKALVESLLGRAQQDYKAKIK-KDVVLKIDNENFLPPD----- 176

Query: 163 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 209
               +C G  ++A++ G+I   NTL++RL+++ ++ LPEIR  L  +
Sbjct: 177 ----TCGGIELIAAK-GRIKISNTLESRLELIAQQLLPEIRNALFGR 218

The vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. This subunit is essential for its assembly or catalytic function. V-ATPase is responsible for energizing electrophoretic K(+)/2H(+) antiport by generating a transmembrane voltage of more than 200mV.

Manduca sexta (taxid: 7130)

>sp|P50518|VATE1_MOUSE V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/228 (39%), Positives = 136/228 (59%), Gaps = 33/228 (14%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE------------------VLN 102
           Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A +                   VL 
Sbjct: 63  QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLPPGPGH 160
            L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YLP     
Sbjct: 123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQEAYLP----- 174

Query: 161 HNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 208
                   +GGV + + D KI   NTL++RLD++ ++ +PE+R  L  
Sbjct: 175 -----EEIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFG 217

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
12585492	230	RecName: Full=V-type proton ATPase subun	1.0	0.921	0.921	1e-114
12585474	230	RecName: Full=V-type proton ATPase subun	1.0	0.921	0.921	1e-114
255537687	230	vacuolar ATP synthase subunit E, putativ	1.0	0.921	0.808	1e-100
225426050	230	PREDICTED: V-type proton ATPase subunit	1.0	0.921	0.821	1e-100
118488420	229	unknown [Populus trichocarpa]	0.990	0.917	0.798	3e-97
224118820	229	predicted protein [Populus trichocarpa]	0.990	0.917	0.798	5e-97
449460539	229	PREDICTED: V-type proton ATPase subunit	0.995	0.921	0.808	7e-96
224123646	229	predicted protein [Populus trichocarpa]	0.985	0.912	0.797	1e-95
356513307	232	PREDICTED: V-type proton ATPase subunit	1.0	0.913	0.771	1e-94
356528948	232	PREDICTED: V-type proton ATPase subunit	1.0	0.913	0.775	1e-94

>gi|12585492|sp|Q9SWE7.1|VATE_CITLI RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=ClVE-1; AltName: Full=Vacuolar proton pump subunit E gi|5733660|gb|AAD49706.1| vacuolar V-H+ATPase subunit E [Citrus limon]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/230 (92%), Positives = 212/230 (92%), Gaps = 18/230 (7%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN                  
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 162
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 163 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212
           AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12585474|sp|Q9MB46.1|VATE_CITUN RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=Vacuolar proton pump subunit E gi|6729085|dbj|BAA89661.1| vacuolar H+-ATPase E subunit-1 [Citrus unshiu]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/230 (92%), Positives = 212/230 (92%), Gaps = 18/230 (7%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN                  
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 162
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 163 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212
           AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537687|ref|XP_002509910.1| vacuolar ATP synthase subunit E, putative [Ricinus communis] gi|223549809|gb|EEF51297.1| vacuolar ATP synthase subunit E, putative [Ricinus communis]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/230 (80%), Positives = 202/230 (87%), Gaps = 18/230 (7%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK+RQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKVRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           QVE+RKKIEYSMQLNASRIKVLQAQDD+V+ M EAA+K++LN                  
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDVVNAMKEAATKDLLNVSRDHHVYRKLLKDLIVQ 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 162
           SLLRLKEPAVLLRCRKDD HL+ESVL+SAKEEYA+K+ VH PEIIVD+H++LPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDLHLLESVLDSAKEEYAEKVNVHAPEIIVDNHVFLPPAPSHHN 180

Query: 163 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212
            HGP CSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPEIRK+L SQVAA
Sbjct: 181 VHGPYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKKLFSQVAA 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426050|ref|XP_002274995.1| PREDICTED: V-type proton ATPase subunit E [Vitis vinifera] gi|297742293|emb|CBI34442.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/230 (82%), Positives = 200/230 (86%), Gaps = 18/230 (7%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           QV+IRKKIEYSMQLNASRIKVLQAQDDLVS+M EAASKE+L+                  
Sbjct: 61  QVDIRKKIEYSMQLNASRIKVLQAQDDLVSSMKEAASKELLHVSHDHHVYKRLLRDLVVQ 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 162
           SLLRLKEPAVLLRCRKDD HLVES+L+SAK+EYA K  V+PPEIIVDH +YLPP P HH+
Sbjct: 121 SLLRLKEPAVLLRCRKDDLHLVESILDSAKDEYAGKANVYPPEIIVDHQVYLPPAPSHHH 180

Query: 163 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212
           AHGP CSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPEIRK L  QVAA
Sbjct: 181 AHGPFCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKWLFGQVAA 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488420|gb|ABK96025.1| unknown [Populus trichocarpa]

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 182/228 (79%), Positives = 196/228 (85%), Gaps = 18/228 (7%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A K++LN                  
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDVVNSMKDVAGKDLLNVSQHHHRYKHLLKDLIVQ 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 162
           SLLRLKEPAVLLRCRKDDHHLVESVL SAKEEYA+K  V+PPE+IVDH +YLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLNSAKEEYAEKANVYPPEVIVDHDVYLPPAPSHHN 180

Query: 163 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQV 210
           AHGP CSGGVV+ASRDGKIV EN+LDARLDVVFRKKLPEIRK LV QV
Sbjct: 181 AHGPFCSGGVVLASRDGKIVFENSLDARLDVVFRKKLPEIRKLLVGQV 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118820|ref|XP_002331357.1| predicted protein [Populus trichocarpa] gi|222874395|gb|EEF11526.1| predicted protein [Populus trichocarpa]

 Score =  359 bits (921), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 182/228 (79%), Positives = 196/228 (85%), Gaps = 18/228 (7%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A K++LN                  
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDVVNSMKDVAGKDLLNVSQHHHRYKHLLKDLIVQ 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 162
           SLLRLKEPAVLLRCRKDDHHLVESVL SAKEEYA+K  V+PPE+IVDH +YLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLHSAKEEYAEKANVYPPEVIVDHDVYLPPAPSHHN 180

Query: 163 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQV 210
           AHGP CSGGVV+ASRDGKIV EN+LDARLDVVFRKKLPEIRK LV QV
Sbjct: 181 AHGPFCSGGVVLASRDGKIVFENSLDARLDVVFRKKLPEIRKLLVGQV 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460539|ref|XP_004148003.1| PREDICTED: V-type proton ATPase subunit E-like [Cucumis sativus]

 Score =  355 bits (911), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 186/230 (80%), Positives = 199/230 (86%), Gaps = 19/230 (8%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           QVEIRKKIEYSMQLNASRIKVLQAQDD+V++M EAASKE+L+                  
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVVNDMKEAASKELLSIGQNEHVYKNLLKDLIVQ 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 162
           SLLRLKEPAVLLRCRK D +LVESVL SA  EYA+K +VH PEIIVD H++LPPGP HH+
Sbjct: 121 SLLRLKEPAVLLRCRKSDVYLVESVLGSAAVEYAEKEKVHEPEIIVD-HVHLPPGPSHHH 179

Query: 163 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212
            HGPSCSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPEIRK L SQVAA
Sbjct: 180 QHGPSCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKSLFSQVAA 229

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123646|ref|XP_002319131.1| predicted protein [Populus trichocarpa] gi|118481235|gb|ABK92567.1| unknown [Populus trichocarpa] gi|118486319|gb|ABK95001.1| unknown [Populus trichocarpa] gi|222857507|gb|EEE95054.1| predicted protein [Populus trichocarpa]

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 181/227 (79%), Positives = 194/227 (85%), Gaps = 18/227 (7%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A KE+LN                  
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDMVNSMKDGAGKELLNVSQNQHHYKNLLKDLIVQ 120

Query: 103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 162
           SLLRLKEPAVLLRCRKDDH+LVESVL SAK+EYA+K  V PPEIIVDH+IYLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHNLVESVLHSAKDEYAEKANVFPPEIIVDHNIYLPPAPSHHN 180

Query: 163 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 209
           AHG SCSGGVV+ASRDGKIV EN+LDARLDV FRKKLPEIRK LV Q
Sbjct: 181 AHGLSCSGGVVLASRDGKIVFENSLDARLDVAFRKKLPEIRKLLVGQ 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513307|ref|XP_003525355.1| PREDICTED: V-type proton ATPase subunit E-like [Glycine max]

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 179/232 (77%), Positives = 195/232 (84%), Gaps = 20/232 (8%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA+KKKIRQEYERKE+
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEADKKKIRQEYERKER 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           QVEIRKKIEYSMQLNASRIKVLQAQDD++S+M EAASKE+L                   
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVISSMKEAASKELLTVSHHHDDHVYRNLLKDLI 120

Query: 103 --SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH 160
              LLRLKEP+VLLRCRKDD HLVE+VL+SA +EYA+K  V PPEIIVD+ +YLPPGP  
Sbjct: 121 VQCLLRLKEPSVLLRCRKDDLHLVENVLDSAAQEYAEKANVDPPEIIVDNQVYLPPGPSR 180

Query: 161 HNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212
           HN+H   CSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPEIRKQL  Q+ A
Sbjct: 181 HNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQIVA 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528948|ref|XP_003533059.1| PREDICTED: V-type proton ATPase subunit E-like [Glycine max]

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 180/232 (77%), Positives = 195/232 (84%), Gaps = 20/232 (8%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKE+
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKER 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN------------------ 102
           QVEIRKKIEYSMQLNASRIKVLQAQDD++S+M EAASKE+LN                  
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVISSMKEAASKELLNVSHHHDDHVYRNLLKDLI 120

Query: 103 --SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH 160
              LLRLKEP+VLLRCRKDD HLVE+VL+SA +EYA+K  V PPEIIVD+ +YLPPG  H
Sbjct: 121 VQCLLRLKEPSVLLRCRKDDLHLVENVLDSAAQEYAEKANVDPPEIIVDNQVYLPPGLTH 180

Query: 161 HNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 212
            N+H   CSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPEIRKQL  Q+ A
Sbjct: 181 QNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQIVA 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:2136088	230	TUF "AT4G11150" [Arabidopsis t	0.481	0.443	0.833	3.3e-40
TAIR|locus:2024527	237	VHA-E3 "AT1G64200" [Arabidopsi	0.476	0.426	0.841	1.1e-39
TAIR|locus:2077893	235	VHA-E2 "vacuolar H+-ATPase sub	0.476	0.429	0.762	2.1e-36
UNIPROTKB|F1S5M0	226	ATP6V1E2 "Uncharacterized prot	0.919	0.862	0.424	2.1e-36
UNIPROTKB|Q32LB7	226	ATP6V1E2 "V-type proton ATPase	0.919	0.862	0.424	2.7e-36
UNIPROTKB|P11019	226	ATP6V1E1 "V-type proton ATPase	0.910	0.853	0.393	4.1e-33
UNIPROTKB|F1SHR3	226	ATP6V1E1 "V-type proton ATPase	0.910	0.853	0.393	4.1e-33
MGI|MGI:894326	226	Atp6v1e1 "ATPase, H+ transport	0.910	0.853	0.393	4.1e-33
UNIPROTKB|E2R1R4	226	ATP6V1E1 "Uncharacterized prot	0.910	0.853	0.393	5.2e-33
UNIPROTKB|P36543	226	ATP6V1E1 "V-type proton ATPase	0.910	0.853	0.393	6.7e-33

TAIR|locus:2136088 TUF "AT4G11150" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 85/102 (83%), Positives = 97/102 (95%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEK
Sbjct:     1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN 102
             Q ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LN
Sbjct:    61 QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLN 102

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA;TAS

GO:0009409 "response to cold" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0007030 "Golgi organization" evidence=RCA;IMP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009832 "plant-type cell wall biogenesis" evidence=IMP

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2024527 VHA-E3 "AT1G64200" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 85/101 (84%), Positives = 96/101 (95%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct:     1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVL 101
             QV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L
Sbjct:    61 QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLL 101

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2077893 VHA-E2 "vacuolar H+-ATPase subunit E isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 77/101 (76%), Positives = 95/101 (94%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK K
Sbjct:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVL 101
             QV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L
Sbjct:    61 QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLL 101

GO:0005634 "nucleus" evidence=ISM

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

UNIPROTKB|F1S5M0 ATP6V1E2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 95/224 (42%), Positives = 134/224 (59%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++D DV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDVDVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS------------------KEVLN 102
             Q+E +KKI+ S   N +R+KVL+A++DL+S ++  A                   K VL 
Sbjct:    63 QIEQQKKIQMSTMRNQARLKVLRARNDLISELLNDAKLSLSRIVADQEVYQALLDKLVLQ 122

Query:   103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXX 162
              LLRL EP V++RCR  D  LV++ ++ A  +Y      H  E+ VD  + L        
Sbjct:   123 GLLRLLEPVVIIRCRPQDLFLVKAAVQKAIPQYTTISHKHV-EVQVDQEVQLAT------ 175

Query:   163 XXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 206
                   +GGV V S D +I   NTL++RLD++F++K+PEIRK L
Sbjct:   176 ----DAAGGVEVYSGDQRIKVSNTLESRLDLLFQQKMPEIRKAL 215

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

UNIPROTKB|Q32LB7 ATP6V1E2 "V-type proton ATPase subunit E 2" [Bos taurus (taxid:9913)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 95/224 (42%), Positives = 135/224 (60%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++D DV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDVDVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS------------------KEVLN 102
             Q+E +KKI+ S   N +R+KVL+A++DL+S ++  A                   K VL 
Sbjct:    63 QIEQQKKIQMSTLRNQARLKVLRARNDLISELLNDAKLRLSRIVTDPEFYQGLLDKLVLQ 122

Query:   103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXX 162
              LLRL EP V++RCR  DH LVE+ ++ A  +Y   +     E+ VD  + L        
Sbjct:   123 GLLRLLEPVVIVRCRPQDHFLVEAAVQRAIPQYTA-VSHRCVEVQVDKEVQLATDT---- 177

Query:   163 XXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 206
                   +GGV V S D +I+  NTL++RLD++ ++K+PEIRK L
Sbjct:   178 ------TGGVEVYSSDQRIMVSNTLESRLDLLSQQKMPEIRKAL 215

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

UNIPROTKB|P11019 ATP6V1E1 "V-type proton ATPase subunit E 1" [Bos taurus (taxid:9913)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 89/226 (39%), Positives = 135/226 (59%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE------------------VLN 102
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A +                   VL 
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXX 160
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL      
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKVATKRDV---DVQIDQEAYLPE---- 175

Query:   161 XXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 206
                     +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   176 ------EIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|F1SHR3 ATP6V1E1 "V-type proton ATPase subunit E 1" [Sus scrofa (taxid:9823)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 89/226 (39%), Positives = 135/226 (59%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE------------------VLN 102
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A +                   VL 
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRYQVLLDGLVLQ 122

Query:   103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXX 160
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL      
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDV---DVQIDQEAYLPE---- 175

Query:   161 XXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 206
                     +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   176 ------EIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

MGI|MGI:894326 Atp6v1e1 "ATPase, H+ transporting, lysosomal V1 subunit E1" [Mus musculus (taxid:10090)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 89/226 (39%), Positives = 135/226 (59%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE------------------VLN 102
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A +                   VL 
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXX 160
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL      
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQEAYLPE---- 175

Query:   161 XXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 206
                     +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   176 ------EIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IGI

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IGI

GO:0015992 "proton transport" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|E2R1R4 ATP6V1E1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 89/226 (39%), Positives = 135/226 (59%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE------------------VLN 102
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A +                   VL 
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXX 160
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL      
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQESYLPE---- 175

Query:   161 XXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 206
                     +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   176 ------EIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

UNIPROTKB|P36543 ATP6V1E1 "V-type proton ATPase subunit E 1" [Homo sapiens (taxid:9606)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 89/226 (39%), Positives = 135/226 (59%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE------------------VLN 102
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A +                   VL 
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   103 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXX 160
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL      
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDV---DVQIDQESYLPE---- 175

Query:   161 XXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 206
                     +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   176 ------DIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0016469 "proton-transporting two-sector ATPase complex" evidence=TAS

GO:0015992 "proton transport" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00780	VATE_DICDI	No assigned EC number	0.3526	0.9622	0.8755	yes	no
Q40272	VATE_MESCR	No assigned EC number	0.7168	0.9764	0.9159	N/A	no
Q6PCU2	VATE1_RAT	No assigned EC number	0.3947	0.9198	0.8628	yes	no
P54611	VATE_DROME	No assigned EC number	0.3964	0.9339	0.8761	yes	no
P11019	VATE1_BOVIN	No assigned EC number	0.3947	0.9198	0.8628	yes	no
O23948	VATE_GOSHI	No assigned EC number	0.7605	0.9952	0.8902	N/A	no
Q39258	VATE1_ARATH	No assigned EC number	0.7	1.0	0.9217	yes	no
P50518	VATE1_MOUSE	No assigned EC number	0.3947	0.9198	0.8628	yes	no
Q9SWE7	VATE_CITLI	No assigned EC number	0.9217	1.0	0.9217	N/A	no
P22203	VATE_YEAST	No assigned EC number	0.3150	0.9056	0.8240	yes	no
Q41396	VATE_SPIOL	No assigned EC number	0.7391	0.9952	0.9213	N/A	no
P36543	VATE1_HUMAN	No assigned EC number	0.3947	0.9198	0.8628	yes	no
Q9MB46	VATE_CITUN	No assigned EC number	0.9217	1.0	0.9217	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
pfam01991	195	pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) su	3e-58
COG1390	194	COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su	4e-16
PRK02292	188	PRK02292, PRK02292, V-type ATP synthase subunit E;	2e-07

>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit

 Score =  181 bits (462), Expect = 3e-58
 Identities = 90/209 (43%), Positives = 123/209 (58%), Gaps = 33/209 (15%)

Query: 16  FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLN 75
           FIRQEAEEKA EI   AEEEF IEK + VE  +KKI + YE+KEKQ E+ K+I  S   N
Sbjct: 1   FIRQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKN 60

Query: 76  ASRIKVLQAQDDLVSNMMEAASKEVLN------------------SLLRLKEPAVLLRCR 117
            +R+KVL A+++L+ ++ E A + + N                  +L++L EP V++R R
Sbjct: 61  EARLKVLNAREELLDSVFEEAKERLANLSEDKDEYKDLLKDLIKQALVKLGEPKVIVRSR 120

Query: 118 KDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASR 177
           ++D  LV+S L+ AKEEY +K      E I D+                 C GGVV+ + 
Sbjct: 121 EEDEELVKSALDEAKEEYKEKTGKDTVETIGDN---------------IDCIGGVVLETE 165

Query: 178 DGKIVCENTLDARLDVVFRKKLPEIRKQL 206
           DGKI  +NTL+ARL+ VF + LPEIRK L
Sbjct: 166 DGKIRVDNTLEARLERVFEQLLPEIRKAL 194

This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit. Length = 195

>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

 Score = 72.8 bits (179), Expect = 4e-16
 Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 41/213 (19%)

Query: 10  IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE 69
           ++++++ I +EAEE+A EI   A EE    K +     ++ I +   + EK+ E  ++  
Sbjct: 4   LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRI 63

Query: 70  YSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNS----------------LLRLKEPAVL 113
            S  L  +R K+L+A+++++ ++ EA  +++ N                 L +L    ++
Sbjct: 64  ISSALLEARRKLLEAKEEILESVFEAVEEKLRNIASDPEYESLQELLIEALEKLLGGELV 123

Query: 114 LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV 173
           +   + D  LVE +L   K                          G     G    GGVV
Sbjct: 124 VYLNEKDKALVEQILRELK-------------------------IGVELGEGIDIIGGVV 158

Query: 174 VASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 206
           V SRDGKI  +NT ++ L+ V  + LPEI ++L
Sbjct: 159 VESRDGKIRLDNTFESILERVLEELLPEISEKL 191

Length = 194

>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 37/211 (17%)

Query: 5   DVSKQIQQMVRFIRQEAEEKANEISVSAEEEF-NIEKLQLVEAEKKKIRQEYERKEKQVE 63
           D+  + +     IR EA+E+A EI   AE +   I + +  EAE ++I Q  E++    +
Sbjct: 9   DIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAE-REIEQLREQELSSAK 67

Query: 64  IRKKIEYSMQLNASR---IKVLQAQDDLVSNMMEAASKEVLNSLLRLKE-PAVLLRCRKD 119
           +  K E   +LNA +     V    +D ++++     +E+  SLL   +   V +  RKD
Sbjct: 68  LEAKRE---RLNARKEVLEDVRNQVEDEIASLDGDKREELTKSLLDAADADGVRVYSRKD 124

Query: 120 DHHLVESVLESAKE-EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRD 178
           D  LV+S+L      EYA  +                            C GGVVV S D
Sbjct: 125 DEDLVKSLLSDYDGLEYAGNID---------------------------CLGGVVVESED 157

Query: 179 GKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 209
           G++   NT D+ L+ V+   L EI  +L  +
Sbjct: 158 GRVRVNNTFDSILEDVWEDNLKEISDRLFGE 188

Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
KOG1664	220	consensus Vacuolar H+-ATPase V1 sector, subunit E	100.0
PRK03963	198	V-type ATP synthase subunit E; Provisional	100.0
PRK02292	188	V-type ATP synthase subunit E; Provisional	99.97
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	99.97
PRK01194	185	V-type ATP synthase subunit E; Provisional	99.96
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	99.96
PRK01558	198	V-type ATP synthase subunit E; Provisional	99.92
PRK01005	207	V-type ATP synthase subunit E; Provisional	99.85
PRK09098	233	type III secretion system protein HrpB; Validated	99.36
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	99.33
PRK06937	204	type III secretion system protein; Reviewed	99.24
PRK06669	281	fliH flagellar assembly protein H; Validated	99.15
PRK06328	223	type III secretion system protein; Validated	99.13
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	98.94
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	98.84
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	98.82
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	98.71
PRK13386	236	fliH flagellar assembly protein H; Provisional	98.34
PF02108	128	FliH: Flagellar assembly protein FliH; InterPro: I	98.27
PRK05687	246	fliH flagellar assembly protein H; Validated	98.19
PRK06032	199	fliH flagellar assembly protein H; Validated	97.83
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	97.78
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	97.67
PRK08475	167	F0F1 ATP synthase subunit B; Validated	97.62
PF06635	207	NolV: Nodulation protein NolV; InterPro: IPR010586	97.51
PRK01194	185	V-type ATP synthase subunit E; Provisional	97.23
PRK02292	188	V-type ATP synthase subunit E; Provisional	96.86
PRK03963	198	V-type ATP synthase subunit E; Provisional	96.74
PRK13436	179	F0F1 ATP synthase subunit delta; Provisional	96.52
PRK01558	198	V-type ATP synthase subunit E; Provisional	96.39
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	96.38
PRK01005	207	V-type ATP synthase subunit E; Provisional	96.33
PRK15354	224	type III secretion system protein SsaK; Provisiona	96.26
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	95.96
PRK13434	184	F0F1 ATP synthase subunit delta; Provisional	95.76
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	95.64
PRK08404	103	V-type ATP synthase subunit H; Validated	95.57
PRK09173	159	F0F1 ATP synthase subunit B; Validated	95.56
PRK09173	159	F0F1 ATP synthase subunit B; Validated	95.5
PRK07352	174	F0F1 ATP synthase subunit B; Validated	95.4
CHL00019	184	atpF ATP synthase CF0 B subunit	95.39
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	95.34
PRK08404	103	V-type ATP synthase subunit H; Validated	95.24
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	95.22
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	95.21
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	95.16
PRK06231	205	F0F1 ATP synthase subunit B; Validated	95.07
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	95.04
PRK00106	535	hypothetical protein; Provisional	94.96
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	94.78
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	94.73
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	94.68
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	94.67
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	94.65
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	94.41
PRK06568	154	F0F1 ATP synthase subunit B; Validated	94.4
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	94.31
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	94.23
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	94.2
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	94.18
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	94.14
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	94.06
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	93.91
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	93.9
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	93.86
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	93.84
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	93.81
COG0712	178	AtpH F0F1-type ATP synthase, delta subunit (mitoch	93.64
PRK08475	167	F0F1 ATP synthase subunit B; Validated	93.57
PRK05759	156	F0F1 ATP synthase subunit B; Validated	93.49
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	93.44
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	93.3
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	93.25
PRK06231	205	F0F1 ATP synthase subunit B; Validated	93.14
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	93.09
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	93.06
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	93.03
PRK13441	180	F0F1 ATP synthase subunit delta; Provisional	92.97
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	92.87
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	92.58
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	92.51
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	92.47
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	92.47
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	92.46
CHL00019	184	atpF ATP synthase CF0 B subunit	92.12
PRK07352	174	F0F1 ATP synthase subunit B; Validated	92.08
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	91.62
PRK15322	210	invasion protein OrgB; Provisional	91.5
PF00213	172	OSCP: ATP synthase delta (OSCP) subunit; InterPro:	91.37
PRK06568	154	F0F1 ATP synthase subunit B; Validated	91.09
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	90.89
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	90.61
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	90.58
PRK12704	520	phosphodiesterase; Provisional	90.52
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	90.35
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	90.01
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	89.68
PRK09098	233	type III secretion system protein HrpB; Validated	89.12
PRK08474	176	F0F1 ATP synthase subunit delta; Validated	89.04
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	88.6
PRK05759	156	F0F1 ATP synthase subunit B; Validated	88.55
PRK13429	181	F0F1 ATP synthase subunit delta; Provisional	87.89
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	87.79
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	87.49
CHL00119	184	atpD ATP synthase CF1 delta subunit; Validated	87.04
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	86.96
TIGR01145	172	ATP_synt_delta ATP synthase, F1 delta subunit. Thi	86.69
PRK05758	177	F0F1 ATP synthase subunit delta; Validated	86.55
PRK12704	520	phosphodiesterase; Provisional	86.46
KOG1662	210	consensus Mitochondrial F1F0-ATP synthase, subunit	84.9
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	83.65
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	82.19
PRK00106	535	hypothetical protein; Provisional	81.99
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	81.42

>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]

Probab=100.00  E-value=2.4e-56  Score=364.75  Aligned_cols=201  Identities=54%  Similarity=0.793  Sum_probs=196.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK   80 (212)
Q Consensus         1 ~~~~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~   80 (212)
                      |+|.+|++||++|+.||.+||.+||+||..+|++||++||.+||++++.+|++.|++|+++++.+++|+.|+.+|++|++
T Consensus         1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK   80 (220)
T KOG1664|consen    1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK   80 (220)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH------------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCC
Q 028203           81 VLQAQDDLVSNMMEAASKEVL------------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH  142 (212)
Q Consensus        81 iL~ar~e~i~~v~~~a~~~L~------------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~  142 (212)
                      +|++|+++|+++|++|..+|.                  |+|+.|.+|.++||||+.|..+|+++++++..+|...+|. 
T Consensus        81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~-  159 (220)
T KOG1664|consen   81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGV-  159 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcC-
Confidence            999999999999999999998                  8999999999999999999999999999999999999998 


Q ss_pred             CCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcCCCCC
Q 028203          143 PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA  212 (212)
Q Consensus       143 ~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~~~~~  212 (212)
                      ++++.+|++.|||+          +|.|||+|+|.||+|.|+|||++||+.++++.+|+||+.|||.+|.
T Consensus       160 ~~e~~id~~~fL~~----------~~~GGVvl~s~dgkI~v~NTLesRLeli~~q~lPeIR~aLFG~n~n  219 (220)
T KOG1664|consen  160 GVEVQIDKKDFLPP----------DVAGGVVLYSRDGKIKVSNTLESRLELIAEQKLPEIRKALFGANPN  219 (220)
T ss_pred             CceeeechhccCCc----------cccCCeEEEcCCCceEecCcHHHHHHHHHHHhhHHHHHHhcCCCCC
Confidence            59999999999986          8999999999999999999999999999999999999999999984

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=100.00  E-value=8.7e-31  Score=217.64  Aligned_cols=175  Identities=27%  Similarity=0.382  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK----EKQVEIRKKIEYSMQLNASRIKVLQAQ   85 (212)
Q Consensus        10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k----~k~~~~~~ri~~s~~l~~~Rl~iL~ar   85 (212)
                      ++++++.|+++|+.++++|+.+|+.+++    +|+++...++..+....    ...++..++...|...+..|+.+|.+|
T Consensus         4 l~~i~~~il~~A~~ea~~il~~A~~~a~----~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar   79 (198)
T PRK03963          4 AELIIQEINREAEQKIEYILEEAQKEAE----KIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQ   79 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999    77777766666543333    334444444445555557788999999


Q ss_pred             HHHHHHHHHHHHHHHH----------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEec
Q 028203           86 DDLVSNMMEAASKEVL----------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD  149 (212)
Q Consensus        86 ~e~i~~v~~~a~~~L~----------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd  149 (212)
                      +++++++|+.|+++|.                +++..+.+++++|+|+|.|..++.+.++++...    .|  ++.+.++
T Consensus        80 ~el~~~v~~~a~~~l~~~~~~~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~~----~~--~~~i~~~  153 (198)
T PRK03963         80 EELISEVLEAVRERLAELPEDEYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRDE----LG--DVEIELG  153 (198)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHHH----hC--CeEEEEC
Confidence            9999999999999998                455566788999999999999999888766533    33  3456655


Q ss_pred             CCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcC
Q 028203          150 HHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  208 (212)
Q Consensus       150 ~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~  208 (212)
                      +              +++|.|||||+|.||+|+|||||++||+.++++++|+|++.|||
T Consensus       154 ~--------------~~~~~GGvil~s~~g~i~~dnT~e~~l~~~~~~~~~~i~~~LF~  198 (198)
T PRK03963        154 E--------------PIETIGGVIVETKDGTIRVDNTFEARMERLESELRAKIAKALFG  198 (198)
T ss_pred             C--------------CCCccceEEEEeCCCCEEEeCcHHHHHHHHHHHhHHHHHHHhcC
Confidence            3              15899999999999999999999999999999999999999997

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=99.97  E-value=2.2e-28  Score=201.88  Aligned_cols=170  Identities=29%  Similarity=0.439  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 028203           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI----RKKIEYSMQLNASRIKVLQAQ   85 (212)
Q Consensus        10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~----~~ri~~s~~l~~~Rl~iL~ar   85 (212)
                      ++.+++.|+++|+.++++|..+|+.+++    .|+.++..++++.+....+.++.    -.+...|...+..|..+|.+|
T Consensus         3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~----~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r   78 (188)
T PRK02292          3 LETVVEDIRDEARARASEIRAEADEEAE----EIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR   78 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999    99998888866554443332222    222334455556666999999


Q ss_pred             HHHHHHHHHHHHHHHH-----------HHHH-hhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcC
Q 028203           86 DDLVSNMMEAASKEVL-----------NSLL-RLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY  153 (212)
Q Consensus        86 ~e~i~~v~~~a~~~L~-----------q~l~-~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~  153 (212)
                      +++|+++|..|+++|.           ..|+ ...+++++|+|+|.|..+++.++...    .      +++  +..   
T Consensus        79 ~~~l~~v~~~a~~kL~~~~~~~y~~~l~~li~~~~~~~~~i~~~~~D~~~~~~~~~~~----~------~~~--~~~---  143 (188)
T PRK02292         79 KEVLEDVRNQVEDEIASLDGDKREELTKSLLDAADADGVRVYSRKDDEDLVKSLLSDY----D------GLE--YAG---  143 (188)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhcCCCCeEEEEccccHHHHHHHHHhc----c------cCe--eCC---
Confidence            9999999999999998           2222 23467889999999999999887642    1      122  211   


Q ss_pred             CCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcCC
Q 028203          154 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  209 (212)
Q Consensus       154 L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~~  209 (212)
                                 +++|.|||||++++|+|+|||||++||+.++++++|+|++.|||.
T Consensus       144 -----------~~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~~~i~~~LF~~  188 (188)
T PRK02292        144 -----------NIDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEISDRLFGE  188 (188)
T ss_pred             -----------CCCCCceEEEEecCCceEEeccHHHHHHHHHHHhhHHHHHHhcCC
Confidence                       147999999999999999999999999999999999999999984

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.97  E-value=1.7e-29  Score=208.43  Aligned_cols=180  Identities=32%  Similarity=0.415  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA   95 (212)
Q Consensus        16 ~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~   95 (212)
                      ||.++|+.+|++|+.+|+++++..+..+..+....+...+.+..++++..+....|......|..+|.+|+++|+++|+.
T Consensus         1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~   80 (198)
T PF01991_consen    1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE   80 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999996666666666666667777777777776555555555567779999999999999999


Q ss_pred             HHHHHH------------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCC
Q 028203           96 ASKEVL------------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG  157 (212)
Q Consensus        96 a~~~L~------------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~  157 (212)
                      ++++|.                  +++..+.+++++|+|++.|.++++.+++.+...|....|...+....+. .+|   
T Consensus        81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~---  156 (198)
T PF01991_consen   81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDS-DYL---  156 (198)
T ss_dssp             HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T-------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCc-ccc---
Confidence            999999                  2333455788999999999999999877666667654444223444442 233   


Q ss_pred             CCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhc
Q 028203          158 PGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV  207 (212)
Q Consensus       158 ~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF  207 (212)
                              ++|+|||+|+++||+|+|||||++||+.+++.+.|.|++.||
T Consensus       157 --------~~~~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i~~~LF  198 (198)
T PF01991_consen  157 --------IDIIGGFILESEDGKIRVDNTFESRLERLKEEIRPEIAKILF  198 (198)
T ss_dssp             --------BSSSSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHHHHHHC
T ss_pred             --------CCccceEEEEECCCCEEEECCHHHHHHHHHHHhHHHHHHHcC
Confidence                    379999999999999999999999999999999999999999

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=99.96  E-value=1.4e-27  Score=197.14  Aligned_cols=158  Identities=18%  Similarity=0.281  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 028203           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI-----RKKIEYSMQLNASRIKVLQA   84 (212)
Q Consensus        10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~-----~~ri~~s~~l~~~Rl~iL~a   84 (212)
                      ++++++.|+++|+.+|++|..+|+.+++    .|+.++..++++..+.-.++++.     .+|+.+++.+.. |+.+|++
T Consensus         3 le~i~~~I~~ea~~~a~~I~~eA~~~ae----ei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~-R~~~L~a   77 (185)
T PRK01194          3 LEDVIKDIEKSREEKKKEINDEYSKRIE----KLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEA-RSIKREK   77 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHH
Confidence            7889999999999999999999999999    99998888777554444333332     589999999955 5599999


Q ss_pred             HHHHHHHHHHHHHHHHH-----------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEE
Q 028203           85 QDDLVSNMMEAASKEVL-----------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII  147 (212)
Q Consensus        85 r~e~i~~v~~~a~~~L~-----------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~  147 (212)
                      |+++|++||+.|+++|.                 +++.. .+|+++|+|++.|..++++.                 +++
T Consensus        78 ree~I~~v~~~a~e~L~~l~~~~~Y~~~L~~LI~~a~~~-l~~~~~v~~~~~D~~~i~~~-----------------~l~  139 (185)
T PRK01194         78 RREILKDYLDIAYEHLMNITKSKEYDSILNKMIEVAIKT-LGEDCIIKVSESDKKKINNA-----------------KIK  139 (185)
T ss_pred             HHHHHHHHHHHHHHHHHcccCCchHHHHHHHHHHHHHHh-cCCCeEEEEcHHhHHHHHhC-----------------cee
Confidence            99999999999999998                 44444 46899999999999988752                 232


Q ss_pred             ecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcCC
Q 028203          148 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  209 (212)
Q Consensus       148 vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~~  209 (212)
                      +     ++          .+|.|||||+|.||+|++||||++++    ++++|.||..||..
T Consensus       140 ~-----~~----------~~~~GGvil~s~dG~I~ld~~l~~~~----~~~~~~iR~~lf~~  182 (185)
T PRK01194        140 F-----AD----------IDPYGGILAYSRDGKRELDLRLSSIF----ENILEDLKVYFYEN  182 (185)
T ss_pred             e-----CC----------ccccccEEEEeCCCcEEehhhHHHHH----HHhHHHHHHHHHhh
Confidence            2     21          37999999999999999999998866    88889999999963

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=99.96  E-value=1.2e-26  Score=192.72  Aligned_cols=175  Identities=31%  Similarity=0.454  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 028203            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR-KKIEYSMQLNASRIKVLQAQDD   87 (212)
Q Consensus         9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~-~ri~~s~~l~~~Rl~iL~ar~e   87 (212)
                      .++.|+++|.++|+++|++|..+|.++++..+..........++.-+....++++.. ++|.+++.+ .+|...|+++++
T Consensus         3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~l-e~r~~~Le~~ee   81 (194)
T COG1390           3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALL-EARRKLLEAKEE   81 (194)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            468899999999999999999999999997777777777777777777778888875 455555455 666699999999


Q ss_pred             HHHHHHHHHHHHHH----------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCC
Q 028203           88 LVSNMMEAASKEVL----------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHH  151 (212)
Q Consensus        88 ~i~~v~~~a~~~L~----------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~  151 (212)
                      +|+++|+.+.++|.                +++.++.+++.+||+++.|..++.+.+.+        .+   ....+.  
T Consensus        82 ~l~~~~~~~~e~L~~i~~~~~~~~l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~--------~~---~~~~~~--  148 (194)
T COG1390          82 ILESVFEAVEEKLRNIASDPEYESLQELLIEALEKLLGGELVVYLNEKDKALVEQILRE--------LK---IGVELG--  148 (194)
T ss_pred             HHHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhh--------cc---cchhcc--
Confidence            99999999999999                34445678888999999999998877664        11   111121  


Q ss_pred             cCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcCC
Q 028203          152 IYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  209 (212)
Q Consensus       152 ~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~~  209 (212)
                          +        +++|.|||+|++.||++++||||++||+..++.+.|.|++.|||.
T Consensus       149 ----~--------~~d~~GGvvv~~~dG~i~~dnt~~sil~~~~e~~~~~i~~~lf~~  194 (194)
T COG1390         149 ----E--------GIDIIGGVVVESRDGKIRLDNTFESILERVLEELLPEISEKLFGV  194 (194)
T ss_pred             ----c--------cCCCcceEEEEeCCCceeecCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence                1        258999999999999999999999999999999999999999984

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=99.92  E-value=1.6e-22  Score=168.75  Aligned_cols=180  Identities=21%  Similarity=0.275  Sum_probs=139.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL   82 (212)
Q Consensus         3 ~~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL   82 (212)
                      +.+++.=+++|.+.|+.+|+.+|++|+.+|+++++    .|+.+++.++++...+-.+++...++...|+....+|..+|
T Consensus         2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe----~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll   77 (198)
T PRK01558          2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEAE----EIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI   77 (198)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999    99999999988887776766666544444444457777899


Q ss_pred             HHHHHHHHHHHHHHHHHHH---------HHHHh-----hcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEe
Q 028203           83 QAQDDLVSNMMEAASKEVL---------NSLLR-----LKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIV  148 (212)
Q Consensus        83 ~ar~e~i~~v~~~a~~~L~---------q~l~~-----l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~v  148 (212)
                      .+++++++.+.+.+.+.+.         ..+.+     ..++++.|++++.|...++..|.+   .+....|. +  +++
T Consensus        78 ~~k~~i~~~~~~~~~~~~~~~~~~e~~~~li~~ll~~~~~~~~~~I~~~~~D~~~l~~~~~~---~~~~~l~~-g--i~i  151 (198)
T PRK01558         78 SFEKSIKSLFKAALKDEVAEVYDSNFLRELIIRVVDSWVKGDKLEIILNESDLSELESILRA---ALGNKLKK-G--IEL  151 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCeeEEECHHHHHHhHHHHHH---HHHHHhcC-C--eEE
Confidence            9999998544333322222         22222     235678999999999999887764   33333332 2  344


Q ss_pred             cCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHh
Q 028203          149 DHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL  206 (212)
Q Consensus       149 d~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~L  206 (212)
                      ..              +.+|.|||+|.+.||++.+||||+++++..++.+.|.+++.|
T Consensus       152 ~~--------------~~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~~~~~~l  195 (198)
T PRK01558        152 KP--------------FKGISKGFKIQQKDGSLYYDFSAEAIADILFSYLNPRFKEVI  195 (198)
T ss_pred             cc--------------cCCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhcHHHHHHH
Confidence            32              157999999999999999999999999999999999999987

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=99.85  E-value=5.5e-19  Score=148.18  Aligned_cols=176  Identities=13%  Similarity=0.159  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 028203            4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR-KKIEYSMQLNASRIKVL   82 (212)
Q Consensus         4 ~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~-~ri~~s~~l~~~Rl~iL   82 (212)
                      +.+++=+++|.+.|+.+|+.+|.+|+.+|+++++    .|+.+++.++....+.-.++++.. +|+.+++.+ .+|..+|
T Consensus         8 ~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l-~~R~~~l   82 (207)
T PRK01005          8 DKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQ-AGKRSLE   82 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            5677778999999999999999999999999999    899999998888877777777764 577777777 5555999


Q ss_pred             HHHHHHHHHHHHHHHHHHH----------HHH-Hhhc----C--------CceEEEeccccHHHHHHHHHHHHHHHHHHh
Q 028203           83 QAQDDLVSNMMEAASKEVL----------NSL-LRLK----E--------PAVLLRCRKDDHHLVESVLESAKEEYAQKL  139 (212)
Q Consensus        83 ~ar~e~i~~v~~~a~~~L~----------q~l-~~l~----e--------~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~  139 (212)
                      .+|+++++.+|..+.+++.          +.| ..+.    .        .-+...++|.++.-.  +.....+.+..  
T Consensus        83 ~aKqevi~~vf~~a~~~lv~~~~~d~~~l~~lI~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~l~~--  158 (207)
T PRK01005         83 SLKQAVENKIFRESLGEWLEHVLTDPEVSAKLIQALVQAIEAQGISGNLTAYIGKHVSARAVNEL--LGKEVTKKLKE--  158 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccccchhhhhcCCHHHHHHH--HHHHHHHHHHH--
Confidence            9999999999999999998          111 1111    0        112334555544322  22222233321  


Q ss_pred             CCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcCC
Q 028203          140 QVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  209 (212)
Q Consensus       140 ~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~~  209 (212)
                       . +  +++..                 ..|||+|.+.||++.+|||++++++.+|+.++|.++.+|||+
T Consensus       159 -~-g--v~~~~-----------------~~gG~~v~~~dg~~~vd~t~d~i~~~~~~~l~~~~~~~LF~~  207 (207)
T PRK01005        159 -K-G--VSVGS-----------------FVGGAQLKVEEKNWVLDLSSQTLLDLLTRYLQKDFREMIFQG  207 (207)
T ss_pred             -c-C--eEEec-----------------cCCceEEEecCCeeEEeCcHHHHHHHHHHHhhHHHHHHhcCC
Confidence             1 2  33431                 259999999999999999999999999999999999999985

>PRK09098 type III secretion system protein HrpB; Validated

Probab=99.36  E-value=4.7e-10  Score=95.93  Aligned_cols=169  Identities=18%  Similarity=0.220  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 028203            7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQE----YERKEKQVEI--RKKIEYSMQLNASRIK   80 (212)
Q Consensus         7 ~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e----~~~k~k~~~~--~~ri~~s~~l~~~Rl~   80 (212)
                      =.++..-.+.|+..|+++|++|+.+|+++++    .|++++..+.+..    |.....+...  ..++...... ..+ .
T Consensus        34 ~~~~~~~~~~ila~Ar~~A~~Il~~A~~~A~----~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~~~~~~-~~~-~  107 (233)
T PRK09098         34 LAAVHAERDAVLAAARARAERIVAEARAQAE----AILEAARREADRSARRGYAAGLRQALAEWHARGADHAFA-ERR-A  107 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-H
Confidence            3456667778888888888888888888888    8887777655433    3333333322  1222222111 111 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH------------HHHHhhc--CCceEEEeccccHHHHHHHHHHHHHHHHHHhCC-CCCe
Q 028203           81 VLQAQDDLVSNMMEAASKEVL------------NSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQV-HPPE  145 (212)
Q Consensus        81 iL~ar~e~i~~v~~~a~~~L~------------q~l~~l~--e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~-~~~~  145 (212)
                      ....++++++=++.-++.-+.            +.+..+.  .+.+.|+++|.|.+++...+......    .|. ..+.
T Consensus       108 ~~~~e~~Lv~lv~~~v~kiv~~~d~~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~~----~g~~~~l~  183 (233)
T PRK09098        108 ARRMRERLAEIVAAAVEQIVLGEDRAALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAAA----GGRNVPVE  183 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHHh----cCCCcceE
Confidence            122366666666666655544            4444432  46899999999999998877754433    222 1344


Q ss_pred             EEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHH
Q 028203          146 IIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI  202 (212)
Q Consensus       146 i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I  202 (212)
                      |..|  ..|++             ||++|.+.+|  .+|+||++||+.+++.+...+
T Consensus       184 Iv~D--p~L~~-------------GgCviET~~G--~IDasl~~ql~~L~~al~~~l  223 (233)
T PRK09098        184 VVGD--PRLAP-------------GACVCEWDFG--VFDASLDTQLRALRRALARAL  223 (233)
T ss_pred             EEeC--CCCCC-------------CCeEEEeCCC--eEecCHHHHHHHHHHHHHHHh
Confidence            5555  34544             9999999998  679999999988877665433

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=99.33  E-value=1.2e-09  Score=94.47  Aligned_cols=75  Identities=16%  Similarity=0.181  Sum_probs=56.4

Q ss_pred             CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHH
Q 028203          109 EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD  188 (212)
Q Consensus       109 e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTle  188 (212)
                      .+.++|||+|.|.+.|....+.+...+..   ...+.|..|+  .|             ..||++|.+.+|.  +|+|++
T Consensus       175 ~~~i~I~v~p~d~~~v~~~~~~l~~~~~~---~~~i~i~~D~--~l-------------~~GgcvIEt~~G~--iDasld  234 (255)
T TIGR03825       175 FDEVSIYVHPHWYERVAAQKDELQSILPA---CEHLAVYPDE--KL-------------PDGGCYVETNFGR--IDASVD  234 (255)
T ss_pred             CCcEEEEECHHHHHHHHHhHHHHHhhcCC---CCceEEEeCC--CC-------------CCCCeEEEcCCce--EEeeHH
Confidence            37899999999999998777654443321   1134555553  33             4599999999996  899999


Q ss_pred             HHHHHHHHhchHHHH
Q 028203          189 ARLDVVFRKKLPEIR  203 (212)
Q Consensus       189 aRL~~~~e~~~p~I~  203 (212)
                      +||+.+++.++-.+.
T Consensus       235 tqLe~l~~~l~~~l~  249 (255)
T TIGR03825       235 TQLEQLKEKLLEALK  249 (255)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998877664

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK06937 type III secretion system protein; Reviewed

Probab=99.24  E-value=2.5e-09  Score=89.55  Aligned_cols=157  Identities=18%  Similarity=0.242  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (212)
Q Consensus        14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~   93 (212)
                      ...|+.+|+++|++|...|+++|+..+..=.++...+...+..+         ++..+.  .....-.-...+++++=++
T Consensus        32 A~~il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G~~~a~~e~~e---------~l~~~~--~~~~~~~~~~e~~l~~Lvl  100 (204)
T PRK06937         32 AEELVEAARQRAEEIEAEAQEVYEQQKQLGYQAGLDEARTEQAE---------LILETV--LQCQEFYRGVEQQMSEVVL  100 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999944443333333333222211         111111  0111011122233333222


Q ss_pred             HHHHHHHH-------------HHHHhhc-CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCC
Q 028203           94 EAASKEVL-------------NSLLRLK-EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPG  159 (212)
Q Consensus        94 ~~a~~~L~-------------q~l~~l~-e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~  159 (212)
                      .-+++=|.             +++..+. .+.++|+++|.|.+.+...+......|.+   ...+.|..|.  .|     
T Consensus       101 ~ia~kil~~~~~~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~~---~~~l~i~~D~--~L-----  170 (204)
T PRK06937        101 EAVRKILNDYDDVERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFPE---VGYLEVVADA--RL-----  170 (204)
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCCC---CccEEEEeCC--CC-----
Confidence            22222111             3333333 47899999999999999877765444432   1124565653  34     


Q ss_pred             CCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHH
Q 028203          160 HHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE  201 (212)
Q Consensus       160 ~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~  201 (212)
                              ..||++|.+.+|.  +|+||++||+.+...+...
T Consensus       171 --------~~Ggc~iET~~G~--vDasl~tql~~l~~al~~~  202 (204)
T PRK06937        171 --------DQGGCILETEVGI--IDASLDGQLEALEQAFHST  202 (204)
T ss_pred             --------CCCCeEEecCCce--EEccHHHHHHHHHHHHHHH
Confidence                    3499999999996  9999999999888776543

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=99.15  E-value=2.6e-08  Score=87.19  Aligned_cols=72  Identities=18%  Similarity=0.268  Sum_probs=54.3

Q ss_pred             CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHH
Q 028203          109 EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD  188 (212)
Q Consensus       109 e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTle  188 (212)
                      .+.+.|+++|.|+.++...+.+....+..   ..++.|..|.  .|             ..|||+|.+.+|.  +|+|++
T Consensus       205 ~~~i~I~V~p~d~~~l~~~~~~l~~~l~~---~~~i~I~~D~--~l-------------~~GgcvIet~~G~--IDasi~  264 (281)
T PRK06669        205 ATDITIRVNPEDYEYVKEQKDELISLLDN---EEHLKIYEDD--AI-------------SKGGCVIETDFGN--IDARID  264 (281)
T ss_pred             CCcEEEEECHHHHHHHHHhHHHHHHhcCC---CCCeEEEECC--CC-------------CCCCeEEEcCCCe--eeccHH
Confidence            36899999999999999887765544432   2245666653  23             3399999999996  999999


Q ss_pred             HHHHHHHHhchH
Q 028203          189 ARLDVVFRKKLP  200 (212)
Q Consensus       189 aRL~~~~e~~~p  200 (212)
                      +||+.+++.++.
T Consensus       265 tqLe~l~~~L~e  276 (281)
T PRK06669        265 TQLKQLKEKLLE  276 (281)
T ss_pred             HHHHHHHHHHHh
Confidence            999988877653

>PRK06328 type III secretion system protein; Validated

Probab=99.13  E-value=2.6e-08  Score=84.74  Aligned_cols=158  Identities=18%  Similarity=0.261  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 028203           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE-YSMQLNASRIKVLQAQDDLVSNM   92 (212)
Q Consensus        14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~-~s~~l~~~Rl~iL~ar~e~i~~v   92 (212)
                      .+.|+..|++.|++|...|.++++    .+.++++.+-   |+....+..  ..+. ....+...+   -...+++++=+
T Consensus        31 A~~il~~a~~~ae~i~~ea~~e~E----~i~eeA~~eG---y~eG~~~~~--~~~~~l~~~~~~~~---~~~e~~lv~La   98 (223)
T PRK06328         31 AQELLEKTKEDSEAYTQETHEECE----KLREEAKNQG---FKEGSKAWS--KQLAFLEEETQKLR---EQVKEALVPLA   98 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            457889999999999999999999    5655444322   222221110  0000 001111111   11223444333


Q ss_pred             HHHHHHHHH---------------HHHHhhc-CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCC
Q 028203           93 MEAASKEVL---------------NSLLRLK-EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPP  156 (212)
Q Consensus        93 ~~~a~~~L~---------------q~l~~l~-e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~  156 (212)
                      +.-|++=|.               ++|..+. ...++|+|+|.|..+|....++....+.+.   ....|..|.  .|++
T Consensus        99 l~ia~kVi~~el~~d~e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~~---~~~~I~~D~--~L~~  173 (223)
T PRK06328         99 IASVKKIIGKELELHPETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEYA---DSLIISPKA--DVTP  173 (223)
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccCC---CceEEEeCC--CCCC
Confidence            333333222               3333333 467999999999999987766544444321   245666663  4543


Q ss_pred             CCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHH
Q 028203          157 GPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIR  203 (212)
Q Consensus       157 ~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~  203 (212)
                                   ||++|.+..|  .||.|+++||+.+...+...+.
T Consensus       174 -------------GgCiIET~~G--~VDasle~ql~~l~~al~~~l~  205 (223)
T PRK06328        174 -------------GGCIIETEAG--IINAQLDVQLAALEKAFSTILK  205 (223)
T ss_pred             -------------CCeEEEeCCc--eEEecHHHHHHHHHHHHHHHHc
Confidence                         9999999988  5789999999888777655543

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=98.94  E-value=3.4e-07  Score=73.54  Aligned_cols=137  Identities=18%  Similarity=0.174  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM   92 (212)
Q Consensus        13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v   92 (212)
                      -...|+.+|+.+|+.|+..|+++++..+..-.+++..+...+...........            +...+..-..-+-.+
T Consensus        14 ~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~~~------------~~~~~~~~e~~l~~l   81 (166)
T TIGR02499        14 QAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQQE------------AEQLEASLEERLAEL   81 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Confidence            56789999999999999999999996666666655555554444333222111            001111111111222


Q ss_pred             HHHHHHHHH--------------HHHHhhc-CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCC
Q 028203           93 MEAASKEVL--------------NSLLRLK-EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG  157 (212)
Q Consensus        93 ~~~a~~~L~--------------q~l~~l~-e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~  157 (212)
                      .-.+.+++.              +.+..+. .+.+.|+|+|.|.+.+...+.+...    ..   ...|..|.  .    
T Consensus        82 ~~~~~~kil~~~~~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~~----~~---~~~i~~D~--~----  148 (166)
T TIGR02499        82 VLQALEQILGEYDEPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERLA----LE---PWELEPDA--S----  148 (166)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHhc----cC---CeEEeeCC--C----
Confidence            223333333              3333333 4789999999999999887775321    11   13454442  2    


Q ss_pred             CCCCCCCCCCCCCcEEEEecCCcEEE
Q 028203          158 PGHHNAHGPSCSGGVVVASRDGKIVC  183 (212)
Q Consensus       158 ~~~~~~~~~~~~GGvvl~s~dG~I~~  183 (212)
                               -+.||++|.+.+|.|.+
T Consensus       149 ---------l~~G~c~vet~~G~vda  165 (166)
T TIGR02499       149 ---------LAPGACVLETESGVVDL  165 (166)
T ss_pred             ---------CCCCCEEEEeCCceeeC
Confidence                     35599999999998754

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.84  E-value=3e-06  Score=72.58  Aligned_cols=171  Identities=19%  Similarity=0.243  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 028203            4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL-   82 (212)
Q Consensus         4 ~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL-   82 (212)
                      ++..+.+..+...+...+.+.++.|...+++-|+    ..++.+..+-.++....-+..+.-.....+...  ...... 
T Consensus        40 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~e----eg~q~G~~eG~~~g~~~~~~~e~~~~li~~~~~--~~~~~~~  113 (234)
T COG1317          40 EELEQALEAKEEELESAAQELQEGIEEGAREGYE----EGFQLGYEEGFEEGQEEGRVLERLAKLIAEFQA--ELEALKE  113 (234)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            4567788888889999999999999999999998    777766666555543221100000000011100  000011 


Q ss_pred             HHHHHHHHHHHHHHHHHHH---------------HHHHhhc-CC-ceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCe
Q 028203           83 QAQDDLVSNMMEAASKEVL---------------NSLLRLK-EP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPE  145 (212)
Q Consensus        83 ~ar~e~i~~v~~~a~~~L~---------------q~l~~l~-e~-~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~  145 (212)
                      ....++++-++.-|++=|.               ++|..+. .+ .+.|+|+|.|+.+|...+++....+    +- ...
T Consensus       114 ~~e~qLv~lvl~ia~~Vi~~~~~~~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~~~~----~~-~l~  188 (234)
T COG1317         114 VVEKQLVQLVLEIARKVIGKELELDPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEELSLL----GW-RLE  188 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhcCHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHHhhc----ch-hee
Confidence            1244445545544444333               3333322 33 8999999999999999887543322    21 122


Q ss_pred             EEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHH
Q 028203          146 IIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI  202 (212)
Q Consensus       146 i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I  202 (212)
                      |..|  ..|+             -||++|++..|  .+|=|+++||..+...+.+..
T Consensus       189 l~~D--~~l~-------------~GgC~IeTe~G--~iDasld~ql~~L~~~~~~~~  228 (234)
T COG1317         189 LVAD--PALS-------------PGGCIIETEFG--IIDASLDTQLAALKRALLESL  228 (234)
T ss_pred             eccC--CCCC-------------CCCeEEEecCc--cccccHHHHHHHHHHHHHhhh
Confidence            4344  2343             39999999988  568899999999988877754

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=98.82  E-value=3.4e-06  Score=72.63  Aligned_cols=164  Identities=15%  Similarity=0.193  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------HHHHH-
Q 028203           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEY-SMQLNASRI------KVLQA-   84 (212)
Q Consensus        13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~-s~~l~~~Rl------~iL~a-   84 (212)
                      -....+++|+.++.+|...|..+++.++..++.++..++....++....++.++.-.. ........+      ++|.. 
T Consensus        61 e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~~A~kil~~~  140 (246)
T TIGR03321        61 EYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTDL  140 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455777889999999999999999888888888888887766666555554322111 111111111      22211 


Q ss_pred             -HHHHHHHHHHHHHHHHH-------HHHHhhc---CCceEEE-eccccHHHHHHHHHHHHHHHHHHhCCC-CCeEEecCC
Q 028203           85 -QDDLVSNMMEAASKEVL-------NSLLRLK---EPAVLLR-CRKDDHHLVESVLESAKEEYAQKLQVH-PPEIIVDHH  151 (212)
Q Consensus        85 -r~e~i~~v~~~a~~~L~-------q~l~~l~---e~~v~v~-~~~~D~~lv~~~l~~~~~~~~~~~~~~-~~~i~vd~~  151 (212)
                       -.+.=..+++...++|.       +.|..+.   +..+.|+ ..|=+-.....+...    +...+|.. .++..+|  
T Consensus       141 ~d~~~~~~lid~~i~~l~~l~~~~~~~l~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~----l~~~~~~~v~~~~~vd--  214 (246)
T TIGR03321       141 ADTDLEERMVDVFVQRLRTLDPDEKAALAEALADSGNPVLVRSAFELPEEQREQIRDT----IRETLGPEIRLRFQTE--  214 (246)
T ss_pred             cChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhCCCCceEEEecCCCCHHHHHHHHHH----HHHHHCCCeeEEeeeC--
Confidence             00111122333333333       2232211   2234443 233333333333322    22234431 2334444  


Q ss_pred             cCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203          152 IYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  198 (212)
Q Consensus       152 ~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~  198 (212)
                                    ++.+|||+|..  |..++|+|+.++|+.+...+
T Consensus       215 --------------p~ligGi~l~~--g~~~id~Si~~~L~~l~~~~  245 (246)
T TIGR03321       215 --------------PDLIGGIELTA--GGHKLAWSVDDYLESLEEDV  245 (246)
T ss_pred             --------------chhcCceEEEE--CCEEEechHHHHHHHHHhhc
Confidence                          48999999998  89999999999999887653

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=98.71  E-value=4.6e-06  Score=69.37  Aligned_cols=138  Identities=21%  Similarity=0.301  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM   92 (212)
Q Consensus        13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v   92 (212)
                      -...|+++|+.+|++|+..|+++++    .+++.+..++.+.+-+.......        .....|..+...-.+....+
T Consensus        31 ~a~~IL~~A~~qA~~Il~~Ae~eAe----~l~~~a~e~a~~~~~q~a~~ll~--------~~~~~~e~l~~~l~~~~~~l   98 (191)
T PF06188_consen   31 QAREILEDARQQAEQILQQAEEEAE----ALLEQAYEQAEAQFWQQANALLQ--------EWQQQREQLLQQLEEQAEEL   98 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999999999    88887777766666544332211        11122324444445555666


Q ss_pred             HHHHHHHHH---------HHHH-----h-hcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCC
Q 028203           93 MEAASKEVL---------NSLL-----R-LKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG  157 (212)
Q Consensus        93 ~~~a~~~L~---------q~l~-----~-l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~  157 (212)
                      +..+.++|-         ..|+     . .....+.++|.|.+.+.|...+.+..        ....++..|  ..|++ 
T Consensus        99 l~~al~~lL~e~~~~qrv~aLlr~l~~~~~~~~~~tL~~hP~~~~~V~~~L~~~~--------~~~w~l~~D--~sl~~-  167 (191)
T PF06188_consen   99 LSQALERLLDETPDQQRVAALLRQLLASQRQESEATLRCHPDQLEEVAAWLAEHP--------ALHWQLQAD--ESLAP-  167 (191)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHhcccccceEEEECHHHHHHHHHHHHhCC--------CcceeeccC--CCCCC-
Confidence            666666666         1222     1 22568899999999999988877421        113455555  45655 


Q ss_pred             CCCCCCCCCCCCCcEEEEecCCcEEEcc
Q 028203          158 PGHHNAHGPSCSGGVVVASRDGKIVCEN  185 (212)
Q Consensus       158 ~~~~~~~~~~~~GGvvl~s~dG~I~~dN  185 (212)
                                  |..+|.+..|...+|.
T Consensus       168 ------------~~l~L~t~~G~~~l~w  183 (191)
T PF06188_consen  168 ------------DQLKLETANGEFRLDW  183 (191)
T ss_pred             ------------CceEEEcCCCcEEECH
Confidence                        7899999999988874

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=98.34  E-value=6.3e-05  Score=64.55  Aligned_cols=70  Identities=10%  Similarity=0.241  Sum_probs=50.5

Q ss_pred             CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHH
Q 028203          109 EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD  188 (212)
Q Consensus       109 e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTle  188 (212)
                      ...++|+|+|.|..+|...+++..         ....|..|.  .|+             .||++|.+.+|  .+|.|++
T Consensus       162 ~~~v~I~vnP~D~~~l~~~~~e~~---------~~~~l~~D~--~l~-------------~GgC~Iet~~g--~iDa~ie  215 (236)
T PRK13386        162 PEQLKVHLNPEEFGRLKDLAPEKV---------QAWGLVADP--SLS-------------AGECRIVTDTS--EADAGCE  215 (236)
T ss_pred             CCCeEEEECHHHHHHHHHhhhccc---------cCeEEEeCC--CcC-------------CCCEEEEeCCc--eEeeCHH
Confidence            368999999999999987665411         135666664  343             39999999877  6799999


Q ss_pred             HHHHHHHHhchHHHHHHhcC
Q 028203          189 ARLDVVFRKKLPEIRKQLVS  208 (212)
Q Consensus       189 aRL~~~~e~~~p~I~~~LF~  208 (212)
                      +||+.+.+.    ++..|++
T Consensus       216 tRl~~~~~~----l~~~l~~  231 (236)
T PRK13386        216 HRLDACMDA----VKEHLLT  231 (236)
T ss_pred             HHHHHHHHH----HHHhccc
Confidence            999776554    4444544

>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE

Probab=98.27  E-value=7.9e-05  Score=56.87  Aligned_cols=61  Identities=28%  Similarity=0.510  Sum_probs=45.9

Q ss_pred             CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHH
Q 028203          109 EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD  188 (212)
Q Consensus       109 e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTle  188 (212)
                      .+.+.|+++|.|.+.+...+.+....+       +..+..|.  .|++             ||++|.+.+|  .+|.|++
T Consensus        67 ~~~v~I~v~p~d~~~l~~~~~~~~~~~-------~~~l~~D~--~l~~-------------G~c~iet~~g--~iD~~i~  122 (128)
T PF02108_consen   67 EEKVTIRVHPDDYEALEELLEDELPEL-------GWELVADP--SLAP-------------GDCRIETEDG--IIDASIE  122 (128)
T ss_pred             CCCeEEEECHHHHHHHHHHHHHHHhhc-------CCEEEecC--CCCC-------------CCEEEEECCe--eEEeCHH
Confidence            578999999999999988877332211       34666664  4543             9999999877  6788999


Q ss_pred             HHHHH
Q 028203          189 ARLDV  193 (212)
Q Consensus       189 aRL~~  193 (212)
                      +||+.
T Consensus       123 ~ql~~  127 (128)
T PF02108_consen  123 TQLEA  127 (128)
T ss_pred             HHHhc
Confidence            99964

Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=98.19  E-value=0.00019  Score=61.60  Aligned_cols=68  Identities=28%  Similarity=0.412  Sum_probs=51.8

Q ss_pred             CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHH
Q 028203          109 EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD  188 (212)
Q Consensus       109 e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTle  188 (212)
                      .+.+.|+|+|.|..+|+..+..   .+.. .   +..|..|.  .|+             .||++|.+.+|.  +|.|++
T Consensus       175 ~~~v~i~v~P~D~~~v~~~~~~---~~~~-~---~~~l~~D~--~l~-------------~Ggc~iet~~g~--vDa~l~  230 (246)
T PRK05687        175 SGKPQLRVNPDDLELVEQLLGA---ELSL-H---GWRLLADP--SLH-------------RGGCRISAEEGD--VDASLE  230 (246)
T ss_pred             CCCceEEECHHHHHHHHHHHhh---HHHh-C---CeEEEeCC--CcC-------------CCCeEEEeCCCc--eeccHH
Confidence            4689999999999999987763   2211 1   45676764  444             399999999886  678999


Q ss_pred             HHHHHHHHhchH
Q 028203          189 ARLDVVFRKKLP  200 (212)
Q Consensus       189 aRL~~~~e~~~p  200 (212)
                      +|++.+++.+.+
T Consensus       231 ~r~~~l~~~l~~  242 (246)
T PRK05687        231 TRWQEVCRLLAP  242 (246)
T ss_pred             HHHHHHHHHHhc
Confidence            999998887654

>PRK06032 fliH flagellar assembly protein H; Validated

Probab=97.83  E-value=0.012  Score=49.07  Aligned_cols=69  Identities=16%  Similarity=0.150  Sum_probs=47.4

Q ss_pred             CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHH
Q 028203          109 EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD  188 (212)
Q Consensus       109 e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTle  188 (212)
                      .+.+.|+++|.|...+...+++....+    |. .+.+.|-.+..|++             ||++|.+.+|.+  ++|+.
T Consensus       127 ~~~v~I~v~P~d~~~l~~~l~~~~~~~----~~-~~~~~l~~D~~L~~-------------G~c~vet~~G~v--d~d~~  186 (199)
T PRK06032        127 TPHLVVRVNDALVEAARERLERLARES----GF-EGRLVVLADPDMAP-------------GDCRLEWADGGV--VRDRA  186 (199)
T ss_pred             CCcEEEEECHHHHHHHHHHHHHHHHhc----Cc-CccEEEeeCCCCCC-------------CCeEEEeCCCeE--ecCHH
Confidence            467999999999999998887654433    32 34444443445654             999999998865  55667


Q ss_pred             HHHHHHHHh
Q 028203          189 ARLDVVFRK  197 (212)
Q Consensus       189 aRL~~~~e~  197 (212)
                      +|...+.+.
T Consensus       187 ~~~~~I~~a  195 (199)
T PRK06032        187 AIEARIEEA  195 (199)
T ss_pred             HHHHHHHHH
Confidence            766655443

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=97.78  E-value=0.014  Score=50.46  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR   65 (212)
Q Consensus        14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~   65 (212)
                      -..-+++|+.++.+|+..|..+++.++..++.+++.++.....+....++.+
T Consensus        62 ~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~E  113 (250)
T PRK14474         62 YRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLERE  113 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445678888888999999999998888888888887777766666555543

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=97.67  E-value=0.021  Score=53.35  Aligned_cols=32  Identities=31%  Similarity=0.461  Sum_probs=28.6

Q ss_pred             CCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203          165 GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  198 (212)
Q Consensus       165 ~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~  198 (212)
                      +++++|||+|.-  |..++|.|+.+||+.+...+
T Consensus       412 DpsLiGGivI~v--Gd~viD~Sv~~rL~~l~~~l  443 (445)
T PRK13428        412 DPELLGGLSIAV--GDEVIDGTLSSRLAAAEAQL  443 (445)
T ss_pred             CchhhCceEEEE--CCEEeehhHHHHHHHHHhhC
Confidence            369999999998  89999999999999887664

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=97.62  E-value=0.0022  Score=52.19  Aligned_cols=76  Identities=18%  Similarity=0.215  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL   88 (212)
Q Consensus         9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~   88 (212)
                      ++..-...++.+|+.+|.+|+..|..+++.++..++.++..++....++....++          ..+.+ .+...|+++
T Consensus        74 ~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie----------~Ek~~-a~~elk~ei  142 (167)
T PRK08475         74 EKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELME----------FEVRK-MEREVVEEV  142 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHHHHHH
Confidence            4455667788899999999999999999988888887777666555444333333          33333 778899999


Q ss_pred             HHHHHHH
Q 028203           89 VSNMMEA   95 (212)
Q Consensus        89 i~~v~~~   95 (212)
                      ++++|+.
T Consensus       143 i~~~~~~  149 (167)
T PRK08475        143 LNELFES  149 (167)
T ss_pred             HHHHHHh
Confidence            9999998

>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []

Probab=97.51  E-value=0.032  Score=46.89  Aligned_cols=153  Identities=20%  Similarity=0.226  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (212)
Q Consensus        15 ~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~   94 (212)
                      ..++..|+..|..|...|+..|+.++++=.++....-.++..+         .+.....--..++..|  .+++.+=|+ 
T Consensus        33 ~~~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g~e~~A~---------llaqa~a~v~r~~a~L--E~~l~~LVl-  100 (207)
T PF06635_consen   33 AAFLAAARREAQRIREWARAAYERERARGYEEGRRAGAEQAAR---------LLAQATAEVARYLAGL--EQELAELVL-  100 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------HHHHHHHHHHHHHHHH--HHHHHHHHH-
Confidence            3567889999999999999999976666555554322222211         1111111112332333  233333333 


Q ss_pred             HHHHHHH--------------HHHHhhc-CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCC
Q 028203           95 AASKEVL--------------NSLLRLK-EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPG  159 (212)
Q Consensus        95 ~a~~~L~--------------q~l~~l~-e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~  159 (212)
                      .+..+|.              +.|..+. +..+.|+++|.|.+.+...+..+    ....|.+.+.|..|  -.|++   
T Consensus       101 ~~Vr~ILg~fd~~ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~----~~~~g~~~i~I~aD--p~La~---  171 (207)
T PF06635_consen  101 EIVRKILGEFDPDELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAAL----EGRPGRPKIRIVAD--PRLAA---  171 (207)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhh----hccCCCCceeeecC--CCCCC---
Confidence            3333443              3333333 45899999999999998877654    22233333455444  45654   


Q ss_pred             CCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchH
Q 028203          160 HHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP  200 (212)
Q Consensus       160 ~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p  200 (212)
                                |.+||.|+-|  .+|-+|++-|+.++.-+.|
T Consensus       172 ----------~~Cvlese~G--~VdagL~aQL~ALr~a~~~  200 (207)
T PF06635_consen  172 ----------GQCVLESEFG--VVDAGLDAQLRALRLAFGP  200 (207)
T ss_pred             ----------CCeeeecccc--hhhccHHHHHHHHHHHhcc
Confidence                      8899999999  4677899999888777665

The function of this family is unclear.; GO: 0009877 nodulation

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=97.23  E-value=0.016  Score=47.99  Aligned_cols=60  Identities=12%  Similarity=0.147  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI   64 (212)
Q Consensus         5 ~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~   64 (212)
                      ++.++-+.-+..|+.+|+.+|++|..+|+++++..+..+..+....+...+++....+.+
T Consensus         9 ~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~L   68 (185)
T PRK01194          9 DIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANI   68 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            445666677788888888888888888888888777777777766666665555444443

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=96.86  E-value=0.066  Score=43.92  Aligned_cols=45  Identities=24%  Similarity=0.251  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK   49 (212)
Q Consensus         5 ~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~   49 (212)
                      ++.++-+.-++.|+.+|+.++++|..+|+++++..+..+..+...
T Consensus         9 ~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~   53 (188)
T PRK02292          9 DIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAER   53 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666778888888888888888888888444444443333

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=96.74  E-value=0.094  Score=43.29  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ   61 (212)
Q Consensus        23 eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~   61 (212)
                      .-+++|...|+.+++    .|+.+++.++.+..+...++
T Consensus         6 ~i~~~il~~A~~ea~----~il~~A~~~a~~i~~~a~~~   40 (198)
T PRK03963          6 LIIQEINREAEQKIE----YILEEAQKEAEKIKEEARKR   40 (198)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666    66666666555554443333

>PRK13436 F0F1 ATP synthase subunit delta; Provisional

Probab=96.52  E-value=0.016  Score=47.57  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=28.4

Q ss_pred             CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhch
Q 028203          166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  199 (212)
Q Consensus       166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~  199 (212)
                      ++++|||+|..  |.-++|.|+.+||+.+...+.
T Consensus       147 pslIGGi~i~~--gd~viD~Sik~~L~~l~~~l~  178 (179)
T PRK13436        147 PKLIAGIKIKV--DNKVFENSIKSKLKELKKQVL  178 (179)
T ss_pred             HHHcCceEEEE--CCEEeehhHHHHHHHHHHHHh
Confidence            48999999998  899999999999998887654

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=96.39  E-value=0.17  Score=42.18  Aligned_cols=39  Identities=13%  Similarity=0.244  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK   58 (212)
Q Consensus         9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k   58 (212)
                      +|+.+++.|.+       +|..+|+++++    .|+.+++.+++.-....
T Consensus         4 ~~~~l~dki~~-------~~~eeA~~eA~----~Ii~eA~~eAe~Ii~eA   42 (198)
T PRK01558          4 EVKDLINKIKK-------DGLEEAERLAN----EIILEAKEEAEEIIAKA   42 (198)
T ss_pred             HHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            44455554443       34455555555    66666665555443333

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=96.38  E-value=0.27  Score=37.30  Aligned_cols=55  Identities=27%  Similarity=0.291  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE   63 (212)
Q Consensus         9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~   63 (212)
                      +...-.+.|..+|+.+|.+|+.+|+.++...++.++......+..+...-+.+.+
T Consensus        25 eAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae   79 (108)
T COG2811          25 EAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAE   79 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444556677777777777777777777777777777776666666555444433

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=96.33  E-value=0.16  Score=42.84  Aligned_cols=42  Identities=26%  Similarity=0.413  Sum_probs=29.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ   53 (212)
Q Consensus         1 ~~~~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~   53 (212)
                      |.+-..+..|+.+++.|.       ++|+..|+.++.    .|+.+++.+...
T Consensus         1 ~~~~~~~~k~q~L~dki~-------~eiL~eA~~eA~----~Il~eAk~~Ae~   42 (207)
T PRK01005          1 MADLSAQDKLKQICDALR-------EETLKPAEEEAG----AIVHNAKEQAKR   42 (207)
T ss_pred             CCcccHHHHHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            445556667777777776       667777888888    888877766654

>PRK15354 type III secretion system protein SsaK; Provisional

Probab=96.26  E-value=0.6  Score=39.43  Aligned_cols=140  Identities=15%  Similarity=0.226  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (212)
Q Consensus        14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~   93 (212)
                      ..-|++.|..||.+|+..|..+-.    .+..+....++.-..+-+.+.|        +..-.....-|-+-++....+.
T Consensus        43 s~~il~~A~rkA~~I~q~A~~~~~----~ll~qaqqqad~L~~~~~~~~E--------~~~L~qHV~wLve~e~lE~sLV  110 (224)
T PRK15354         43 SHAIVSSAYRKAEKIIRDAYRYQR----EQKVEQQQELACLRKNTLEKME--------VEWLEQHVKHLQEDENQFRSLV  110 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhHHHHHHHH
Confidence            457899999999999988887766    6666555444433333222222        2222333344555555555556


Q ss_pred             HHHHHHHH-----------------HHHH--------hh-cCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEE
Q 028203           94 EAASKEVL-----------------NSLL--------RL-KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII  147 (212)
Q Consensus        94 ~~a~~~L~-----------------q~l~--------~l-~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~  147 (212)
                      ..++.+|.                 +.|+        ++ .++..++++.|.+...+...+..            .+++.
T Consensus       111 ~~~~~~I~~aI~~VltaW~gQQ~isq~Li~RLa~Qv~~mA~eg~LtL~VHP~~~~am~~afG~------------R~~~v  178 (224)
T PRK15354        111 DHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIHPEKEALMRETFGK------------RFTLI  178 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCceEEEECHHHHHHHHHHHhc------------ceeee
Confidence            66665555                 2222        22 26788999999999888665542            45666


Q ss_pred             ecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHH
Q 028203          148 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVV  194 (212)
Q Consensus       148 vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~  194 (212)
                      +|.  .|++             +--.|.|+  ...+..+|+.-|...
T Consensus       179 ~d~--~~a~-------------dQAeLsSp--~l~v~~sL~rHL~qL  208 (224)
T PRK15354        179 IEP--GFSP-------------DQAELSST--RYAVEFSLSRHFNAL  208 (224)
T ss_pred             ecC--CcCh-------------hhHHhcCC--ceEEeeeHHHHHHHH
Confidence            663  3332             33345553  566666676665443

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.96  E-value=0.53  Score=38.31  Aligned_cols=29  Identities=21%  Similarity=0.379  Sum_probs=21.7

Q ss_pred             CCcEEEcc-----cHHHHHHHHHHhchHHHHHHh
Q 028203          178 DGKIVCEN-----TLDARLDVVFRKKLPEIRKQL  206 (212)
Q Consensus       178 dG~I~~dN-----TleaRL~~~~e~~~p~I~~~L  206 (212)
                      -|++++-+     .++.-++..++.+.+.++..+
T Consensus       160 ~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i  193 (198)
T PF01991_consen  160 IGGFILESEDGKIRVDNTFESRLERLKEEIRPEI  193 (198)
T ss_dssp             SSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHH
T ss_pred             cceEEEEECCCCEEEECCHHHHHHHHHHHhHHHH
Confidence            56777743     377778999999888887654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK13434 F0F1 ATP synthase subunit delta; Provisional

Probab=95.76  E-value=0.023  Score=46.75  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhch
Q 028203          166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  199 (212)
Q Consensus       166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~  199 (212)
                      ++++|||+|.-  |.-++|.|+.+||+.+...+.
T Consensus       143 psLIGG~ii~i--gd~viD~Svk~~L~~l~~~l~  174 (184)
T PRK13434        143 KNLLGGFVVQF--NDLKIEKSIASQLGEIKKAML  174 (184)
T ss_pred             hHHcCceEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence            48999999998  889999999999999988874

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=95.64  E-value=0.53  Score=33.82  Aligned_cols=26  Identities=27%  Similarity=0.230  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           12 QMVRFIRQEAEEKANEISVSAEEEFN   37 (212)
Q Consensus        12 ~m~~~I~~EA~eka~eI~~~A~ee~~   37 (212)
                      .-...|+.+|+.++.+|+..|..+++
T Consensus         9 ~~~~~~l~~A~~ea~~Ii~~A~~~A~   34 (85)
T TIGR02926         9 EDAEELIEEAEEERKQRIAEAREEAR   34 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555666666666666666666

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=95.57  E-value=0.69  Score=34.67  Aligned_cols=53  Identities=21%  Similarity=0.244  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE   63 (212)
Q Consensus        11 ~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~   63 (212)
                      +.-...++.+|+.++.+|+..|..+++..+..++.++..++..-.+.-.+.++
T Consensus        12 E~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie   64 (103)
T PRK08404         12 EKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGE   64 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566677777777777777777766666666555555544444444443

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=95.56  E-value=0.73  Score=36.75  Aligned_cols=94  Identities=24%  Similarity=0.286  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (212)
Q Consensus        15 ~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~   94 (212)
                      ...+++|+.++.+|+..|..+++    .++.+...++..+..+               ....++..+-..|+.++.++..
T Consensus        60 e~~L~~A~~ea~~ii~~A~~~a~----~~~~~a~~~a~~~~~~---------------~~~~a~~~I~~ek~~a~~el~~  120 (159)
T PRK09173         60 QRKRKEAEKEAADIVAAAEREAE----ALTAEAKRKTEEYVAR---------------RNKLAEQKIAQAETDAINAVRS  120 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666666655    4444444444333322               2334444555556666666555


Q ss_pred             HHHHHHHHHHHhhcCCceEEEeccccHHHHHHHHHH
Q 028203           95 AASKEVLNSLLRLKEPAVLLRCRKDDHHLVESVLES  130 (212)
Q Consensus        95 ~a~~~L~q~l~~l~e~~v~v~~~~~D~~lv~~~l~~  130 (212)
                      .+.+--.+...++.+..+   ....+..++..++.+
T Consensus       121 ~~~~lA~~~A~kil~~~l---~~~~~~~li~~~i~~  153 (159)
T PRK09173        121 SAVDLAIAAAEKLLAEKV---DAKAASELFKDALAQ  153 (159)
T ss_pred             HHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHH
Confidence            554433344445444432   122334566666654

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=95.50  E-value=0.8  Score=36.52  Aligned_cols=88  Identities=15%  Similarity=0.175  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 028203            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA----   84 (212)
Q Consensus         9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~a----   84 (212)
                      +.+.-...|..+|+..++.+...|..+++.+..++...+...|..+..+-..++..  .+ ....+..+. ++|..    
T Consensus        65 ~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~--~~-~~lA~~~A~-kil~~~l~~  140 (159)
T PRK09173         65 EAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRS--SA-VDLAIAAAE-KLLAEKVDA  140 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHH-HHHHhhcCH
Confidence            44556778889999999999999999999888888888888887765555444432  11 222222222 33322    


Q ss_pred             --HHHHHHHHHHHHHHHH
Q 028203           85 --QDDLVSNMMEAASKEV  100 (212)
Q Consensus        85 --r~e~i~~v~~~a~~~L  100 (212)
                        ...+|++.+..+-++|
T Consensus       141 ~~~~~li~~~i~~~~~~~  158 (159)
T PRK09173        141 KAASELFKDALAQVKTRL  158 (159)
T ss_pred             HHHHHHHHHHHHHHhhhc
Confidence              3456666666665544

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=95.40  E-value=0.89  Score=36.87  Aligned_cols=46  Identities=9%  Similarity=0.094  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK   58 (212)
Q Consensus        13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k   58 (212)
                      -....+++|+.+|.+|+..|..+++..+..++.++...+.......
T Consensus        75 ~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a  120 (174)
T PRK07352         75 EAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTA  120 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455678888888888888888888776676666665555444433

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=95.39  E-value=0.87  Score=37.34  Aligned_cols=47  Identities=28%  Similarity=0.294  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKE   59 (212)
Q Consensus        13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~   59 (212)
                      -....+++|+.++.+|+..|..+++.++..++.++..++......-.
T Consensus        80 e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~  126 (184)
T CHL00019         80 KARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKN  126 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34557888888888888888888887777777776665554444433

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=95.34  E-value=0.054  Score=47.41  Aligned_cols=31  Identities=32%  Similarity=0.531  Sum_probs=28.1

Q ss_pred             CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203          166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  198 (212)
Q Consensus       166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~  198 (212)
                      ++.+|||+|.-  |.-++|+|+.+||+.+...+
T Consensus       239 psLIGGivI~v--Gd~viD~Sv~~rL~~L~~~L  269 (271)
T PRK13430        239 PSVLGGMRVQV--GDEVIDGSVAGRLERLRRRL  269 (271)
T ss_pred             ccccCcEEEEE--CCEEEehhHHHHHHHHHHHh
Confidence            48999999998  89999999999999888765

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=95.24  E-value=0.83  Score=34.23  Aligned_cols=69  Identities=17%  Similarity=0.178  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA   96 (212)
Q Consensus        20 EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a   96 (212)
                      +|+.++++++..|+.++.    .|+..++......|+....++..    .....+..+|..+=..++.++.++-..+
T Consensus        10 ~aE~~~e~~L~~A~~Ea~----~Ii~~Ak~~A~k~~~eii~eA~~----eA~~ile~Ak~eie~Ek~~a~~elk~ei   78 (103)
T PRK08404         10 KAEKEAEERIEKAKEEAK----KIIRKAKEEAKKIEEEIIKKAEE----EAQKLIEKKKKEGEEEAKKILEEGEKEI   78 (103)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777777877777777    78877777777777776665543    2223344445455555555554444433

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=95.22  E-value=0.44  Score=34.24  Aligned_cols=39  Identities=33%  Similarity=0.429  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV   62 (212)
Q Consensus        20 EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~   62 (212)
                      +|+.++++++..|+.++.    .|+..++......+......+
T Consensus         6 ~ae~~~~~~l~~A~~ea~----~Ii~~A~~~A~~~~~~a~~~A   44 (85)
T TIGR02926         6 KAEEDAEELIEEAEEERK----QRIAEAREEARELLEEAEEEA   44 (85)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555    555555544444444444333

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=95.21  E-value=0.99  Score=34.26  Aligned_cols=59  Identities=22%  Similarity=0.318  Sum_probs=42.8

Q ss_pred             CChHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            1 MNDADVSKQIQQ---MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE   63 (212)
Q Consensus         1 ~~~~~~~~~i~~---m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~   63 (212)
                      |++.++-..|.+   -.....++|++.++.|+..|++++.    .|+.+...++.+.++.-+....
T Consensus         3 m~~~Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~ear----eiieeaE~eA~~~~~e~l~~~~   64 (108)
T COG2811           3 MDDSEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAR----EIIEEAEEEAEKLAQEILEEAR   64 (108)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555543   3566778899999999999999998    8888888888877766555433

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=95.16  E-value=1.2  Score=35.98  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 028203           15 RFIRQEAEEKANEISVSAEEEFN   37 (212)
Q Consensus        15 ~~I~~EA~eka~eI~~~A~ee~~   37 (212)
                      ...+++|+.++.+|+..|..+++
T Consensus        68 e~~L~~A~~ea~~Ii~~A~~~a~   90 (167)
T PRK14475         68 KAEREEAERQAAAMLAAAKADAR   90 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555556666666666555

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=95.07  E-value=1.3  Score=37.17  Aligned_cols=44  Identities=18%  Similarity=0.061  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY   55 (212)
Q Consensus        12 ~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~   55 (212)
                      .-.+..+++|+.+|.+|+..|.++++..+..++.++..+++...
T Consensus       103 ~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii  146 (205)
T PRK06231        103 ENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLII  146 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777888888888888888888666666665555444433

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=95.04  E-value=1.4  Score=36.70  Aligned_cols=109  Identities=17%  Similarity=0.220  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE   99 (212)
Q Consensus        20 EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~   99 (212)
                      +++...+.|...|+++++    .|..++..++....++..+.++..    ....+...+.+.-..++.++..+.-+++..
T Consensus         3 ~~e~~i~~I~~~a~eeak----~I~~eA~~eae~i~~ea~~~~~~~----~~~~~~~~~~ea~~~~~~iis~A~le~r~~   74 (194)
T COG1390           3 ELEKLIKKILREAEEEAE----EILEEAREEAEKIKEEAKREAEEA----IEEILRKAEKEAERERQRIISSALLEARRK   74 (194)
T ss_pred             cHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788999999999999    888877776665544443333321    111122333344455566666655555544


Q ss_pred             HH-------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHH
Q 028203          100 VL-------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYA  136 (212)
Q Consensus       100 L~-------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~  136 (212)
                      +.       ++++....+.+.-..++.+...+..++.++...|.
T Consensus        75 ~Le~~ee~l~~~~~~~~e~L~~i~~~~~~~~l~~ll~~~~~~~~  118 (194)
T COG1390          75 LLEAKEEILESVFEAVEEKLRNIASDPEYESLQELLIEALEKLL  118 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHhcC
Confidence            44       23333333333334555566667777776666554

>PRK00106 hypothetical protein; Provisional

Probab=94.96  E-value=3.7  Score=39.49  Aligned_cols=33  Identities=27%  Similarity=0.254  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA   46 (212)
Q Consensus        14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~   46 (212)
                      ...|+.+|+.+|++|+.+|..+++.++..+..+
T Consensus        44 A~~IleeAe~eAe~I~keA~~EAke~~ke~~lE   76 (535)
T PRK00106         44 AVNLRGKAERDAEHIKKTAKRESKALKKELLLE   76 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335566777777777777666665444444333

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=94.78  E-value=1.7  Score=35.31  Aligned_cols=40  Identities=13%  Similarity=0.148  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ   53 (212)
Q Consensus        14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~   53 (212)
                      -+..+.+|+.++.+|+..|+.+++.++..++.++..++..
T Consensus        75 ~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~  114 (173)
T PRK13453         75 NKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANG  114 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777777777777777776666666555544443

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=94.73  E-value=1.7  Score=34.60  Aligned_cols=45  Identities=13%  Similarity=0.054  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER   57 (212)
Q Consensus        13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~   57 (212)
                      -....+.+|+.++.+|+..|..+++..+..++.++..++....+.
T Consensus        61 e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~  105 (159)
T PRK13461         61 KNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIER  105 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446677788888888888888888877777777666655544433

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=94.68  E-value=1.9  Score=34.94  Aligned_cols=42  Identities=19%  Similarity=0.198  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQE   54 (212)
Q Consensus        13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e   54 (212)
                      -....+++|+.++.+|+..|..+++..+..++.++..++...
T Consensus        72 e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~  113 (173)
T PRK13460         72 DYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQ  113 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777788888888888888866666655555444433

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=94.67  E-value=1.8  Score=35.05  Aligned_cols=96  Identities=16%  Similarity=0.177  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN  102 (212)
Q Consensus        23 eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q  102 (212)
                      .++++....|+.++.    .|+.+++..+....+....++..    .....+..++..+-..++.++.++..++..--.+
T Consensus        71 ~e~e~~l~~a~~ea~----~ii~~A~~ea~~~~~~~~~~A~~----ea~~~~~~a~~~ie~e~~~a~~el~~ei~~lA~~  142 (173)
T PRK13460         71 KDYEARLNSAKDEAN----AIVAEAKSDALKLKNKLLEETNN----EVKAQKDQAVKEIELAKGKALSQLQNQIVEMTIT  142 (173)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666666    88888888777777766665543    2333444555566666666666665555543334


Q ss_pred             HHHhhcCCceEEEecccc-HHHHHHHHHH
Q 028203          103 SLLRLKEPAVLLRCRKDD-HHLVESVLES  130 (212)
Q Consensus       103 ~l~~l~e~~v~v~~~~~D-~~lv~~~l~~  130 (212)
                      ...++..+.+    ++.| ..++..++.+
T Consensus       143 ~a~kil~~~l----~~~~~~~lid~~i~~  167 (173)
T PRK13460        143 IASKVLEKQL----KKEDYKAFIETELAK  167 (173)
T ss_pred             HHHHHHHHHC----CHHHHHHHHHHHHHH
Confidence            4445444432    3343 3455665553

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=94.65  E-value=1.8  Score=34.60  Aligned_cols=33  Identities=18%  Similarity=-0.006  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVE   45 (212)
Q Consensus        13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~   45 (212)
                      -.+..+.+|+.++.+|+..|+++++..+..++.
T Consensus        64 e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~   96 (164)
T PRK14471         64 DNERLLKEARAERDAILKEAREIKEKMIADAKE   96 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556667777777777777777633333333

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=94.41  E-value=2.2  Score=34.41  Aligned_cols=95  Identities=14%  Similarity=0.161  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSL  104 (212)
Q Consensus        25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l  104 (212)
                      +++....|+.++.    .|+.++.......++....++..    .....+..++..+-..++.++.++...+.+--.+..
T Consensus        67 ~e~~L~~A~~ea~----~Ii~~A~~~a~~~~~~~~~~A~~----ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A  138 (167)
T PRK14475         67 VKAEREEAERQAA----AMLAAAKADARRMEAEAKEKLEE----QIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAA  138 (167)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555666    88888888888777776665543    233445566667777777777777766655444444


Q ss_pred             HhhcCCceEEEeccccHHHHHHHHHH
Q 028203          105 LRLKEPAVLLRCRKDDHHLVESVLES  130 (212)
Q Consensus       105 ~~l~e~~v~v~~~~~D~~lv~~~l~~  130 (212)
                      .++....+   ....+..+|.+++.+
T Consensus       139 ~kil~~~l---~~~~~~~lid~~i~~  161 (167)
T PRK14475        139 ETVLAARL---AGAKSDPLVDAAIGQ  161 (167)
T ss_pred             HHHHHhHc---CHHHHHHHHHHHHHH
Confidence            45544332   223344566666654

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=94.40  E-value=2.2  Score=34.38  Aligned_cols=48  Identities=13%  Similarity=0.192  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ   61 (212)
Q Consensus        10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~   61 (212)
                      +..-....+.+|+.+|.+|+..|.++++    ++.++...+++.+.++...+
T Consensus        57 l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~----~~~~ea~~eA~~ea~r~~~~  104 (154)
T PRK06568         57 LFEQTNAQIKKLETLRSQMIEESNEVTK----KIIQEKTKEIEEFLEHKKSD  104 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            3444566778888888888888888888    66666665555555444333

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=94.31  E-value=2.2  Score=34.11  Aligned_cols=47  Identities=13%  Similarity=0.191  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER   57 (212)
Q Consensus        11 ~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~   57 (212)
                      ..-....+.+|+.+|.+|+..|..+++..+..++.++..++....+.
T Consensus        62 ~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~  108 (164)
T PRK14473         62 KRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEE  108 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445667777777777777777777766666666665555444333

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=94.23  E-value=1.2  Score=35.47  Aligned_cols=52  Identities=13%  Similarity=0.028  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV   62 (212)
Q Consensus        11 ~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~   62 (212)
                      ..-....+++|+.+|.+|...|.++++.++..++.++..++....+.-..++
T Consensus        76 ~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i  127 (156)
T CHL00118         76 TKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQL  127 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345667788888888888888888886666666666555554444433333

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=94.20  E-value=2.5  Score=34.27  Aligned_cols=39  Identities=15%  Similarity=0.190  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (212)
Q Consensus        14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~   52 (212)
                      .+..+.+|+.+|.+|...|+++++..+..++.++..++.
T Consensus        75 ~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~  113 (175)
T PRK14472         75 NRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAK  113 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666777777777777777777555555554444333

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=94.18  E-value=2.6  Score=34.46  Aligned_cols=55  Identities=13%  Similarity=0.198  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEecccc-HHHHHHHHHHHH
Q 028203           74 LNASRIKVLQAQDDLVSNMMEAASKEVLNSLLRLKEPAVLLRCRKDD-HHLVESVLESAK  132 (212)
Q Consensus        74 l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l~~l~e~~v~v~~~~~D-~~lv~~~l~~~~  132 (212)
                      +..++..+-..++.++.++...+.+--.+...++.+..    .++.| ..+|...+.+..
T Consensus       125 ~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~kil~~~----l~~~~~~~lid~~i~~l~  180 (184)
T PRK13455        125 LAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADVIAKQ----MTAADANALIDEAIKEVE  180 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHh
Confidence            33444455555555555555444433333333443332    13333 356666666543

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=94.14  E-value=2.3  Score=35.68  Aligned_cols=32  Identities=19%  Similarity=0.046  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLV   44 (212)
Q Consensus        13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv   44 (212)
                      -.+..+.+|+.++.+|+..|+++++.++..++
T Consensus       109 ~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~  140 (204)
T PRK09174        109 AYEQELAQARAKAHSIAQAAREAAKAKAEAER  140 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666666666663333333

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=94.06  E-value=2.6  Score=34.54  Aligned_cols=37  Identities=14%  Similarity=0.108  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAE   47 (212)
Q Consensus        11 ~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~   47 (212)
                      ..-.+.++++|+.++.+|+..|.++++.++..++.+.
T Consensus        85 ~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A  121 (181)
T PRK13454         85 EKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKA  121 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666777777777777766664444444433

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=93.91  E-value=1.7  Score=33.69  Aligned_cols=45  Identities=13%  Similarity=0.108  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER   57 (212)
Q Consensus        13 m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~   57 (212)
                      -.+..+++|+.++.+|...|..+++.++..++.++..++....+.
T Consensus        61 ~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~  105 (140)
T PRK07353         61 QYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEK  105 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777777777777777777766666666665555444433

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=93.90  E-value=2.7  Score=33.61  Aligned_cols=97  Identities=13%  Similarity=0.137  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           22 EEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVL  101 (212)
Q Consensus        22 ~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~  101 (212)
                      ..+.+.....|+.++.    .|+.+++.++...++....++..    .....+..++..+-..++.++.++...+..--.
T Consensus        62 ~~e~e~~l~~A~~ea~----~ii~~A~~~a~~~~~~~l~~A~~----ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~la~  133 (164)
T PRK14473         62 KRDYEAELAKARQEAA----KIVAQAQERARAQEAEIIAQARR----EAEKIKEEARAQAEQERQRMLSELKSQIADLVT  133 (164)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666777777    99999988888887777766553    233445566666777777777777666555444


Q ss_pred             HHHHhhcCCceEEEeccccHHHHHHHHH
Q 028203          102 NSLLRLKEPAVLLRCRKDDHHLVESVLE  129 (212)
Q Consensus       102 q~l~~l~e~~v~v~~~~~D~~lv~~~l~  129 (212)
                      +...++.+..+   -...+..++..++.
T Consensus       134 ~~a~kil~~~l---~~~~~~~li~~~i~  158 (164)
T PRK14473        134 LTASRVLGAEL---QARGHDALIAESLA  158 (164)
T ss_pred             HHHHHHHHhHc---CHHHHHHHHHHHHH
Confidence            55555555443   22334556666665

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=93.86  E-value=2.9  Score=33.85  Aligned_cols=96  Identities=10%  Similarity=0.207  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           24 KANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNS  103 (212)
Q Consensus        24 ka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~  103 (212)
                      +++.....|+.++.    .|+.++...+....+....++..    .....+..++..+-..++.++.++...+-+--.+.
T Consensus        74 e~e~~L~~a~~ea~----~ii~~A~~~a~~~~~~~~~~A~~----ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA~~~  145 (175)
T PRK14472         74 KNRELLAKADAEAD----KIIREGKEYAEKLRAEITEKAHT----EAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKG  145 (175)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556666666    88888877777776666555543    23334445555666666666666666555443334


Q ss_pred             HHhhcCCceEEEeccc-cHHHHHHHHHHH
Q 028203          104 LLRLKEPAVLLRCRKD-DHHLVESVLESA  131 (212)
Q Consensus       104 l~~l~e~~v~v~~~~~-D~~lv~~~l~~~  131 (212)
                      ..++.+..+    ++. +..+|..++.+.
T Consensus       146 a~kil~~~l----~~~~~~~li~~~i~~l  170 (175)
T PRK14472        146 AEKIIRTSL----DADKQKKVVDSMIQDL  170 (175)
T ss_pred             HHHHHHHHC----CHHHHHHHHHHHHHHh
Confidence            444444332    223 334666666554

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=93.84  E-value=2.7  Score=36.20  Aligned_cols=38  Identities=21%  Similarity=0.297  Sum_probs=27.0

Q ss_pred             CCcEEEEec----CCcEEEcc---cHHHHHHHHHHhchHHHHHHh
Q 028203          169 SGGVVVASR----DGKIVCEN---TLDARLDVVFRKKLPEIRKQL  206 (212)
Q Consensus       169 ~GGvvl~s~----dG~I~~dN---TleaRL~~~~e~~~p~I~~~L  206 (212)
                      .|++.|...    .|+.+|..   ++++.|+.-++.+...+...|
T Consensus       204 ~~~i~i~~D~~l~~GgcvIEt~~G~iDasldtqLe~l~~~l~~~l  248 (255)
T TIGR03825       204 CEHLAVYPDEKLPDGGCYVETNFGRIDASVDTQLEQLKEKLLEAL  248 (255)
T ss_pred             CCceEEEeCCCCCCCCeEEEcCCceEEeeHHHHHHHHHHHHHHHH
Confidence            467666654    47777764   467888888888877777776

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=93.81  E-value=2.8  Score=33.39  Aligned_cols=76  Identities=16%  Similarity=0.147  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSL  104 (212)
Q Consensus        25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l  104 (212)
                      ++.....|+.++.    .|+.+++......++....++..    .....+..++..+-..+...+.++...+..--....
T Consensus        62 ~~~~l~~a~~ea~----~ii~~a~~~a~~~~~~i~~~A~~----ea~~~~~~a~~~i~~e~~~a~~~l~~ei~~lA~~~a  133 (159)
T PRK13461         62 NERELKNAKEEGK----KIVEEYKSKAENVYEEIVKEAHE----EADLIIERAKLEAQREKEKAEYEIKNQAVDLAVLLS  133 (159)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666    88887777777776666555543    233344455545555566665555555544333333


Q ss_pred             Hhhc
Q 028203          105 LRLK  108 (212)
Q Consensus       105 ~~l~  108 (212)
                      .++.
T Consensus       134 ~kil  137 (159)
T PRK13461        134 SKAL  137 (159)
T ss_pred             HHHH
Confidence            3433

>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

Probab=93.64  E-value=0.25  Score=40.66  Aligned_cols=31  Identities=23%  Similarity=0.479  Sum_probs=27.4

Q ss_pred             CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203          166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  198 (212)
Q Consensus       166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~  198 (212)
                      ++.+||++|..  |.-++|.|+.++|+.+...+
T Consensus       147 ~sliGG~iI~v--gd~viD~Svr~~L~~l~~~l  177 (178)
T COG0712         147 PSLIGGLIIKV--GDEVIDGSVRGKLKRLAKAL  177 (178)
T ss_pred             HHHhCceEEEE--CCEEEechHHHHHHHHHHhc
Confidence            48999999998  89999999999998876553

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=93.57  E-value=2.4  Score=34.27  Aligned_cols=73  Identities=18%  Similarity=0.118  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEV  100 (212)
Q Consensus        21 A~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L  100 (212)
                      ...+++++..+|+.++.    .|+.+++..++..++....++...    ....+..++..+-..++.++.++..++...+
T Consensus        75 ~~~e~e~~L~~Ar~eA~----~Ii~~A~~eAe~~~~~ii~~A~~e----a~~~~~~a~~~ie~Ek~~a~~elk~eii~~~  146 (167)
T PRK08475         75 KKEDALKKLEEAKEKAE----LIVETAKKEAYILTQKIEKQTKDD----IENLIKSFEELMEFEVRKMEREVVEEVLNEL  146 (167)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777788888888    999999998888888777766542    2233344444566666666666665555544


Q ss_pred             H
Q 028203          101 L  101 (212)
Q Consensus       101 ~  101 (212)
                      -
T Consensus       147 ~  147 (167)
T PRK08475        147 F  147 (167)
T ss_pred             H
Confidence            4

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=93.49  E-value=3  Score=32.83  Aligned_cols=47  Identities=15%  Similarity=-0.009  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER   57 (212)
Q Consensus        11 ~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~   57 (212)
                      ..-....+.+|+.++.+|+..|..+++.++..++.+...++....+.
T Consensus        58 ~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~  104 (156)
T PRK05759         58 QAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQ  104 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456677788888888888888888866666666555554444433

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=93.44  E-value=3.8  Score=35.13  Aligned_cols=96  Identities=11%  Similarity=0.095  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSL  104 (212)
Q Consensus        25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l  104 (212)
                      +++....|+.++.    .|+.+++..+....+....++..    .....+..+|..+-..++.++.++..++..-..+..
T Consensus        62 ~e~~l~~a~~ea~----~i~~~A~~eA~~~~~~i~~~A~~----ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~~A  133 (246)
T TIGR03321        62 YEEKNEELDQQRE----VLLTKAKEEAQAERQRLLDEARE----EADEIREKWQEALRREQAALSDELRRRTGAEVFAIA  133 (246)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666666    99998888888777776665543    233334455555555666666555555544443333


Q ss_pred             HhhcCCceEEEeccccHHHHHHHHHHH
Q 028203          105 LRLKEPAVLLRCRKDDHHLVESVLESA  131 (212)
Q Consensus       105 ~~l~e~~v~v~~~~~D~~lv~~~l~~~  131 (212)
                      .++.+..+   -......++..++.+.
T Consensus       134 ~kil~~~~---d~~~~~~lid~~i~~l  157 (246)
T TIGR03321       134 RKVLTDLA---DTDLEERMVDVFVQRL  157 (246)
T ss_pred             HHHHHHhc---ChHHHHHHHHHHHHHh
Confidence            34433322   1123345667766544

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=93.30  E-value=1.9  Score=32.02  Aligned_cols=49  Identities=20%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV   62 (212)
Q Consensus        10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~   62 (212)
                      .++....|..+|+.....++..|..+|+    ..+.....+.+.+|.......
T Consensus        12 AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~----~ei~~~r~~~e~~~~~~~~~~   60 (105)
T PF03179_consen   12 AEKEAQEIVEEARKEREQRLKQAKEEAE----KEIEEFRAEAEEEFKEKEAEA   60 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-S----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence            4556667777777777777777777777    666666666666665554443

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=93.25  E-value=8  Score=36.97  Aligned_cols=29  Identities=28%  Similarity=0.103  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           15 RFIRQEAEEKANEISVSAEEEFNIEKLQL   43 (212)
Q Consensus        15 ~~I~~EA~eka~eI~~~A~ee~~~ek~~i   43 (212)
                      ..++.+|+.+|+.|+..|+.+++.++..+
T Consensus        24 ~~~l~~Ae~eAe~i~keA~~eAke~~ke~   52 (514)
T TIGR03319        24 EKKLGSAEELAKRIIEEAKKEAETLKKEA   52 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555554333333

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=93.14  E-value=4  Score=34.23  Aligned_cols=95  Identities=15%  Similarity=0.206  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           24 KANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNS  103 (212)
Q Consensus        24 ka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~  103 (212)
                      .+++...+|+.++.    .|+..++.++...++....++..    .....+..++..+-..++.++.++..++.+--.+.
T Consensus       104 e~e~~L~~A~~eA~----~Ii~~A~~eAe~~~e~i~~~A~~----eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~i  175 (205)
T PRK06231        104 NAKQRHENALAQAK----EIIDQANYEALQLKSELEKEANR----QANLIIFQARQEIEKERRELKEQLQKESVELAMLA  175 (205)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666666    88888888887777666665443    34455566666666667766666666555433344


Q ss_pred             HHhhcCCceEEEeccccHHHHHHHHH
Q 028203          104 LLRLKEPAVLLRCRKDDHHLVESVLE  129 (212)
Q Consensus       104 l~~l~e~~v~v~~~~~D~~lv~~~l~  129 (212)
                      ..++....+   -...+..++.+++.
T Consensus       176 A~kiL~k~l---d~~~~~~lI~~~i~  198 (205)
T PRK06231        176 AEELIKKKV---DREDDDKLVDEFIR  198 (205)
T ss_pred             HHHHHHhhC---CHHHHHHHHHHHHH
Confidence            445544432   12223356665554

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=93.09  E-value=3.8  Score=32.77  Aligned_cols=94  Identities=9%  Similarity=0.198  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSL  104 (212)
Q Consensus        25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l  104 (212)
                      .++....|+.++.    .|+.+++......+.....++..    .....+..++..+-..++.++..+...+..--....
T Consensus        65 ~e~~l~~A~~ea~----~ii~~A~~~a~~~~~~~~~~A~~----ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~la~~~a  136 (164)
T PRK14471         65 NERLLKEARAERD----AILKEAREIKEKMIADAKEEAQV----EGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIA  136 (164)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666    88888888777776666555443    233445566666777777777776666655444444


Q ss_pred             HhhcCCceEEEec-cccHHHHHHHHH
Q 028203          105 LRLKEPAVLLRCR-KDDHHLVESVLE  129 (212)
Q Consensus       105 ~~l~e~~v~v~~~-~~D~~lv~~~l~  129 (212)
                      .++.+..+   -. ..+..++..++.
T Consensus       137 ~kil~~~l---~~~~~~~~lid~~i~  159 (164)
T PRK14471        137 EKVLRKEL---SNKEKQHKLVEKMLG  159 (164)
T ss_pred             HHHHHHHc---CcHhHHHHHHHHHHH
Confidence            55544431   12 234556666665

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=93.06  E-value=4.6  Score=34.89  Aligned_cols=161  Identities=14%  Similarity=0.118  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 028203            7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA--   84 (212)
Q Consensus         7 ~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~a--   84 (212)
                      .++...|++....+|+...++|..+|+++++    ++..+....++.+..+-..++..  ++ .+..+..++ ++|..  
T Consensus        70 ~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~----~~~~~a~~~ie~Ek~~a~~~L~~--~v-~~la~~~A~-kiL~~~~  141 (250)
T PRK14474         70 EQQRASFMAQAQEAADEQRQHLLNEAREDVA----TARDEWLEQLEREKQEFFKALQQ--QT-GQQMVKIIR-AALADLA  141 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHH-HHHHhhc
Confidence            3444445555555555555555666666666    77777777777666555554432  21 122222333 33322  


Q ss_pred             HHHHHHHHHHHHHHHHH-------HHHHhh--cCCceEEEe----ccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCC
Q 028203           85 QDDLVSNMMEAASKEVL-------NSLLRL--KEPAVLLRC----RKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHH  151 (212)
Q Consensus        85 r~e~i~~v~~~a~~~L~-------q~l~~l--~e~~v~v~~----~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~  151 (212)
                      -...-..+++...++|.       +.|...  .+..+.|+.    .|.+...+...+.+.      ..|. ++.+....+
T Consensus       142 d~~~~~~lid~~i~~l~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~~~~~~~~~~~l~~~------~~~~-~~~~~f~~~  214 (250)
T PRK14474        142 NATLEQQIVGIFIARLEHLSEAERQALANSNTTPEMLRIRTSFELSQDLRAQILESLHQT------HLIP-GTDIHFVTS  214 (250)
T ss_pred             CHHHHHHHHHHHHHHhcccCHHHHHHHHhhhcCCCCeEEEeCCCCCHHHHHHHHHHHHHH------hcCC-CCceeeecC
Confidence            11122233344444444       223211  122233332    233444554444420      2332 334433321


Q ss_pred             cCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203          152 IYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  198 (212)
Q Consensus       152 ~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~  198 (212)
                                    ++.++|+-|..  |+-.+.|||++.|+.+-+.+
T Consensus       215 --------------p~li~Giel~~--~~~~i~ws~~~yl~~l~~~~  245 (250)
T PRK14474        215 --------------PELICGIELKT--EGYKIAWTLAEYLDALESQL  245 (250)
T ss_pred             --------------cccccCeEEec--CCceEeccHHHHHHHHHHHH
Confidence                          47899999998  67889999999997765443

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=93.03  E-value=2.8  Score=31.09  Aligned_cols=42  Identities=31%  Similarity=0.323  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE   63 (212)
Q Consensus        18 ~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~   63 (212)
                      +-+|+..|.+|+.+|+....    .++.+++.++..+++.-..+.+
T Consensus         9 Ll~AE~eA~~iV~~Ar~~r~----~~lk~Ak~eA~~ei~~~r~~~e   50 (105)
T PF03179_consen    9 LLEAEKEAQEIVEEARKERE----QRLKQAKEEAEKEIEEFRAEAE   50 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999988    9999998888877666554444

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>PRK13441 F0F1 ATP synthase subunit delta; Provisional

Probab=92.97  E-value=0.31  Score=39.76  Aligned_cols=32  Identities=28%  Similarity=0.260  Sum_probs=28.6

Q ss_pred             CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhch
Q 028203          166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  199 (212)
Q Consensus       166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~  199 (212)
                      ++.+||+++..  |.-++|+|+.++|+.+...++
T Consensus       146 ~sliGG~~i~i--g~~~~D~Sik~~L~~l~~~l~  177 (180)
T PRK13441        146 ESLIAGAVVEF--EGKRLDVTVQGRLKKIAREVL  177 (180)
T ss_pred             hHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHh
Confidence            38999999998  789999999999999888774

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=92.87  E-value=4.2  Score=32.71  Aligned_cols=46  Identities=30%  Similarity=0.299  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ   61 (212)
Q Consensus        12 ~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~   61 (212)
                      .-.+.-+.+|+.++.+|+..|..+++    .+.++...+.+.+..+....
T Consensus        61 ~~~~~~l~~Ar~~a~~Ii~~A~~~a~----~~~~e~~~~a~~e~~r~~~~  106 (161)
T COG0711          61 AEYEQELEEAREQASEIIEQAKKEAE----QIAEEIKAEAEEELERIKEA  106 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            34455667778888888888888888    55555555555554444443

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=92.58  E-value=4.1  Score=31.81  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK   50 (212)
Q Consensus        12 ~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~k   50 (212)
                      .-....+++|+.+|.+|+..|..+++..+..++.+....
T Consensus        50 ~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e   88 (147)
T TIGR01144        50 KKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREE   88 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566777777777777777777775555555544433

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.51  E-value=1.8  Score=32.80  Aligned_cols=46  Identities=28%  Similarity=0.242  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER   57 (212)
Q Consensus        12 ~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~   57 (212)
                      .-.+..+.+|+..+.+|+..|.++++..+..++.+....+......
T Consensus        54 ~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~   99 (132)
T PF00430_consen   54 AEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQ   99 (132)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566677777777777777777755555555554444444333

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=92.47  E-value=4.3  Score=31.88  Aligned_cols=54  Identities=30%  Similarity=0.362  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE   63 (212)
Q Consensus        10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~   63 (212)
                      +..-...++++|+.+|..+...|..+++.+..++++++...++.+...-..+++
T Consensus        60 ~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~  113 (141)
T PRK08476         60 IEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLA  113 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445666777777777777777777766667777777777766665555544

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=92.47  E-value=5  Score=32.56  Aligned_cols=94  Identities=13%  Similarity=0.229  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSL  104 (212)
Q Consensus        25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l  104 (212)
                      .++....|+.++.    .|+.+++......++....++..    .....+..++..+-..++.++.++...+.+--.+..
T Consensus        75 ~e~~l~~a~~ea~----~ii~~a~~~a~~~~~~~~~~A~~----ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a  146 (173)
T PRK13453         75 NKQKLKETQEEVQ----KILEDAKVQARQQQEQIIHEANV----RANGMIETAQSEINSQKERAIADINNQVSELSVLIA  146 (173)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666    88888888887777776665543    233345566667777777777777766665444444


Q ss_pred             HhhcCCceEEEeccccHHHHHHHHH
Q 028203          105 LRLKEPAVLLRCRKDDHHLVESVLE  129 (212)
Q Consensus       105 ~~l~e~~v~v~~~~~D~~lv~~~l~  129 (212)
                      .++....+   -.+.+..++..++.
T Consensus       147 ~kll~~~l---~~~~~~~lI~~~i~  168 (173)
T PRK13453        147 SKVLRKEI---SEQDQKALVDKYLK  168 (173)
T ss_pred             HHHHHhHc---CHHHHHHHHHHHHH
Confidence            45444332   12333445555554

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=92.46  E-value=5.1  Score=32.70  Aligned_cols=41  Identities=20%  Similarity=0.205  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY   55 (212)
Q Consensus        15 ~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~   55 (212)
                      +.-+++|+.++.+|+..|..+++.++..++.+...++....
T Consensus        85 e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~  125 (184)
T PRK13455         85 ERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRL  125 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677788888888888888888555555555554444333

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=92.12  E-value=5.7  Score=32.47  Aligned_cols=95  Identities=13%  Similarity=0.045  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSL  104 (212)
Q Consensus        25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l  104 (212)
                      +++....|+.++.    .|+..++..+...++....++..    .....++.++..+-..++.++..+..++..-..+..
T Consensus        81 ~e~~L~~A~~ea~----~ii~~A~~~ae~~~~~il~~A~~----ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~lav~~A  152 (184)
T CHL00019         81 ARARLRQAELEAD----EIRVNGYSEIEREKENLINQAKE----DLERLENYKNETIRFEQQRAINQVRQQVFQLALQRA  152 (184)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666    88888888888777776665543    333445566656666666666666665555444444


Q ss_pred             HhhcCCceEEEeccccHHHHHHHHHH
Q 028203          105 LRLKEPAVLLRCRKDDHHLVESVLES  130 (212)
Q Consensus       105 ~~l~e~~v~v~~~~~D~~lv~~~l~~  130 (212)
                      .++.+..+   -...+..++..++.+
T Consensus       153 ~kil~~~l---d~~~~~~lid~~i~~  175 (184)
T CHL00019        153 LGTLNSCL---NNELHLRTINANIGL  175 (184)
T ss_pred             HHHHHhHc---CHHHHHHHHHHHHHH
Confidence            45444432   223344456666654

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=92.08  E-value=5.5  Score=32.21  Aligned_cols=74  Identities=12%  Similarity=0.122  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNSL  104 (212)
Q Consensus        25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q~l  104 (212)
                      +++.+..|+.++.    .|+.+++..+....+....++..    .....+..++..+-..++..+.++...+..-..+..
T Consensus        76 ~~~~L~~a~~ea~----~ii~~a~~~a~~~~~~~~~~A~~----e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la~~~A  147 (174)
T PRK07352         76 AQQKLAQAQQEAE----RIRADAKARAEAIRAEIEKQAIE----DMARLKQTAAADLSAEQERVIAQLRREAAELAIAKA  147 (174)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666666    88888888888777776665543    223334455555666666666666655555444333


Q ss_pred             Hh
Q 028203          105 LR  106 (212)
Q Consensus       105 ~~  106 (212)
                      .+
T Consensus       148 ~k  149 (174)
T PRK07352        148 ES  149 (174)
T ss_pred             HH
Confidence            33

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=91.62  E-value=6.6  Score=32.53  Aligned_cols=82  Identities=21%  Similarity=0.247  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEV  100 (212)
Q Consensus        21 A~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L  100 (212)
                      +...|.+|+..|+.+++    +|+..+..+.+...+.-..++..+-.-...+.+.    .....++.+...+.+.+..-+
T Consensus        28 ~~~~a~~IL~~A~~qA~----~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a~~ll~----~~~~~~e~l~~~l~~~~~~ll   99 (191)
T PF06188_consen   28 AQQQAREILEDARQQAE----QILQQAEEEAEALLEQAYEQAEAQFWQQANALLQ----EWQQQREQLLQQLEEQAEELL   99 (191)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            57789999999999999    9999999888876664333333221112223332    345667888888888888778


Q ss_pred             HHHHHhhcCC
Q 028203          101 LNSLLRLKEP  110 (212)
Q Consensus       101 ~q~l~~l~e~  110 (212)
                      .++|..+..+
T Consensus       100 ~~al~~lL~e  109 (191)
T PF06188_consen  100 SQALERLLDE  109 (191)
T ss_pred             HHHHHHHHHc
Confidence            7888887653

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK15322 invasion protein OrgB; Provisional

Probab=91.50  E-value=7.7  Score=32.70  Aligned_cols=45  Identities=24%  Similarity=0.197  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE   63 (212)
Q Consensus        12 ~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~   63 (212)
                      +-...+.+.|+.+|.+|...|+.|++    .|-..+..   .-|...+.++.
T Consensus        12 ~~a~~l~~qA~~kA~~ii~qA~~eaE----~ir~~A~~---~GYq~Gl~qa~   56 (210)
T PRK15322         12 FSAERLEQQARRRAKRILRQAEEEAE----TLRMYAYQ---EGYEQGMIDAL   56 (210)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHH
Confidence            34567899999999999999999999    88776654   45777666654

>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.37  E-value=0.054  Score=43.62  Aligned_cols=80  Identities=20%  Similarity=0.289  Sum_probs=31.5

Q ss_pred             EEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCC-----------------CCCCCCCCCcEEEEe
Q 028203          114 LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHH-----------------NAHGPSCSGGVVVAS  176 (212)
Q Consensus       114 v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~-----------------~~~~~~~~GGvvl~s  176 (212)
                      +.+...-..+++.++.+....|....|.  ..++|-....|+++....                 ...+++.+|||+|..
T Consensus        75 ~l~~~~r~~~l~~i~~~~~~~~~~~~~~--~~~~V~sA~~l~~~q~~~l~~~l~~~~~~~~v~~~~~vD~sLigG~~i~~  152 (172)
T PF00213_consen   75 LLIDNNRLSLLPEILEEFEELVNEHNGI--VEATVTSAFPLSEEQKKKLEKKLKKKYGKKKVELNYKVDPSLIGGFIIEV  152 (172)
T ss_dssp             HHCCTT-CCCHHHHHHHHHHHHHHHCCT--S-B-SSS-B----SSSTTTTTTCCCTTTT---------------------
T ss_pred             HHHhcCCcccHHHHHHHHHHHHHHHcCe--EEEEEEEecCCCHHHHHHHHHHHHHHHCCCeeeEEEEEccccCcEEEEEE
Confidence            3344555556777777666666655554  333333344555432111                 123468999999998


Q ss_pred             cCCcEEEcccHHHHHHHHHHh
Q 028203          177 RDGKIVCENTLDARLDVVFRK  197 (212)
Q Consensus       177 ~dG~I~~dNTleaRL~~~~e~  197 (212)
                        |..++|.|+.++|+.+...
T Consensus       153 --~~~~iD~Sv~~~L~~l~~~  171 (172)
T PF00213_consen  153 --GDKVIDASVKSRLEQLKKE  171 (172)
T ss_dssp             ------TTTTTTTTTTTT-TT
T ss_pred             --CCEEEehhHHHHHHHHHhc
Confidence              8899999999999876554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=91.09  E-value=2.9  Score=33.63  Aligned_cols=65  Identities=11%  Similarity=0.095  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS   97 (212)
Q Consensus        25 a~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~   97 (212)
                      .++.+.+|+.+++    .|+.+++.......+....++..    .....+..++..+-.+|+..+.++-.++.
T Consensus        61 ~e~~L~~Ar~EA~----~Ii~~A~~~a~~~~~ea~~eA~~----ea~r~~~~A~~~Ie~Ek~~Al~elr~eva  125 (154)
T PRK06568         61 TNAQIKKLETLRS----QMIEESNEVTKKIIQEKTKEIEE----FLEHKKSDAIQLIQNQKSTASKELQDEFC  125 (154)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666    78887777666665555444432    12222334444566666666665555444

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=90.89  E-value=6.2  Score=30.50  Aligned_cols=68  Identities=7%  Similarity=0.099  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASK   98 (212)
Q Consensus        23 eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~   98 (212)
                      ..+++....|+.++.    .|+.+++..+...++.....+..    .....+..++..+...++.++.++...+-+
T Consensus        60 ~~~e~~L~~a~~ea~----~i~~~a~~~a~~~~~~~~~~a~~----ea~~~~~~a~~~i~~e~~~a~~~l~~~v~~  127 (140)
T PRK07353         60 AQYEQQLASARKQAQ----AVIAEAEAEADKLAAEALAEAQA----EAQASKEKARREIEQQKQAALAQLEQQVDA  127 (140)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666777777    88888888888887777665543    233445566666677777776666665543

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=90.61  E-value=7.6  Score=31.80  Aligned_cols=77  Identities=16%  Similarity=0.216  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           22 EEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVL  101 (212)
Q Consensus        22 ~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~  101 (212)
                      ..+.++++.+|+.++.    .|+.+.+.++.+.++....++..    .....+..++..+-..|+..+..+...+.+ |.
T Consensus        85 ~~eye~~L~~Ar~EA~----~ii~~A~~ea~~~~~~~~~~A~~----e~~~~~aea~~~I~~~k~~a~~~l~~~a~~-lA  155 (181)
T PRK13454         85 EKAYNKALADARAEAQ----RIVAETRAEIQAELDVAIAKADA----EIAAKAAESEKRIAEIRAGALESVEEVAKD-TA  155 (181)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            3445666777777777    99998888888887777666643    233445555556677777776665554433 33


Q ss_pred             -HHHHhh
Q 028203          102 -NSLLRL  107 (212)
Q Consensus       102 -q~l~~l  107 (212)
                       ..+.+|
T Consensus       156 ~~i~~kL  162 (181)
T PRK13454        156 EALVAAL  162 (181)
T ss_pred             HHHHHHH
Confidence             334455

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=90.58  E-value=12  Score=35.88  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            8 KQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKL   41 (212)
Q Consensus         8 ~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~   41 (212)
                      ++.+++......+|++...+...+|++++...+.
T Consensus        32 ~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~   65 (514)
T TIGR03319        32 ELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRA   65 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444334444444444444444444443333

>PRK12704 phosphodiesterase; Provisional

Probab=90.52  E-value=17  Score=34.87  Aligned_cols=22  Identities=36%  Similarity=0.303  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 028203           16 FIRQEAEEKANEISVSAEEEFN   37 (212)
Q Consensus        16 ~I~~EA~eka~eI~~~A~ee~~   37 (212)
                      .+..+|+.+|+.|+.+|+.+++
T Consensus        31 ~~l~~Ae~eAe~I~keA~~eAk   52 (520)
T PRK12704         31 AKIKEAEEEAKRILEEAKKEAE   52 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555554

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=90.35  E-value=7.7  Score=32.54  Aligned_cols=79  Identities=9%  Similarity=0.145  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN  102 (212)
Q Consensus        23 eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q  102 (212)
                      ...++.+.+|+.++.    .|+.+.+.+...+++..+.+++.+    ....+..++..+-..|+..+.++-..+.+--.+
T Consensus       108 ~~ye~~L~~Ar~eA~----~Ii~~Ar~ea~~~~e~~~~~a~~e----a~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~~  179 (204)
T PRK09174        108 AAYEQELAQARAKAH----SIAQAAREAAKAKAEAERAAIEAS----LEKKLKEAEARIAAIKAKAMADVGSIAEETAAA  179 (204)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344666667777777    888888888888777776666532    223344555566666776666655544432223


Q ss_pred             HHHhhcC
Q 028203          103 SLLRLKE  109 (212)
Q Consensus       103 ~l~~l~e  109 (212)
                      ...++.+
T Consensus       180 I~~Kllg  186 (204)
T PRK09174        180 IVEQLIG  186 (204)
T ss_pred             HHHHHhC
Confidence            3344543

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=90.01  E-value=8.4  Score=30.63  Aligned_cols=66  Identities=14%  Similarity=0.139  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA   96 (212)
Q Consensus        23 eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a   96 (212)
                      +++++...+|+.++.    .|+++++.++++.++.....+..    .....+..++..+-..++.++.++...+
T Consensus        77 ~e~e~~L~~A~~ea~----~ii~~A~~~a~~~~~~~~~~A~~----ea~~~~~~a~~~i~~ek~~a~~~l~~~v  142 (156)
T CHL00118         77 KQYEQELSKARKEAQ----LEITQSQKEAKEIVENELKQAQK----YIDSLLNEATKQLEAQKEKALKSLEEQV  142 (156)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556666777776    88888887777776666555443    2223344444455555555555554443

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=89.68  E-value=12  Score=35.10  Aligned_cols=51  Identities=16%  Similarity=0.114  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI   64 (212)
Q Consensus        14 ~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~   64 (212)
                      -+.++++|+.++.+|+.+|+++++..+..++.++..++....+....+++.
T Consensus        58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~  108 (445)
T PRK13428         58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQL  108 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445778888888888888888888777777776666666555554444443

>PRK09098 type III secretion system protein HrpB; Validated

Probab=89.12  E-value=13  Score=31.73  Aligned_cols=36  Identities=8%  Similarity=0.151  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER   57 (212)
Q Consensus        18 ~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~   57 (212)
                      ........++|+++|+++++    .|+.+++.++.+-.+.
T Consensus        34 ~~~~~~~~~~ila~Ar~~A~----~Il~~A~~~A~~I~~~   69 (233)
T PRK09098         34 LAAVHAERDAVLAAARARAE----RIVAEARAQAEAILEA   69 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            45566778899999999999    9999888866644433

>PRK08474 F0F1 ATP synthase subunit delta; Validated

Probab=89.04  E-value=4.3  Score=32.97  Aligned_cols=30  Identities=17%  Similarity=0.130  Sum_probs=22.2

Q ss_pred             CCcEEEEecCCcEEEcccHHHHHHHHHHhchHHH
Q 028203          169 SGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI  202 (212)
Q Consensus       169 ~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I  202 (212)
                      +|||+|..  |..++|.|  ..|+.+...+..-|
T Consensus       143 IGG~ii~i--gd~v~D~s--~~l~~~~~~~~~~~  172 (176)
T PRK08474        143 YDGIKVEV--DDLGVEVS--FSKDRLKNQLIEYI  172 (176)
T ss_pred             CCCEEEEE--CCEEEEee--eeHHHHHHHHHHHH
Confidence            89999998  88999984  45666666555444

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=88.60  E-value=10  Score=29.73  Aligned_cols=39  Identities=28%  Similarity=0.309  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV   62 (212)
Q Consensus        20 EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~   62 (212)
                      ++....+++...|+.++.    .++++...++..++++...++
T Consensus        59 ~~~~e~e~~l~~Ar~eA~----~~~~~a~~~A~~ea~~~~~~A   97 (141)
T PRK08476         59 EIEHEIETILKNAREEAN----KIRQKAIAKAKEEAEKKIEAK   97 (141)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            445566777778888888    666666666666655555444

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=88.55  E-value=10  Score=29.74  Aligned_cols=80  Identities=14%  Similarity=0.134  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN  102 (212)
Q Consensus        23 eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q  102 (212)
                      .+++....+|+.++.    .|+.++...+...++....++..    .....+..++..+-..++.+..++...+.+--.+
T Consensus        59 ~e~~~~l~~a~~ea~----~i~~~a~~ea~~~~~~~~~~a~~----ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~  130 (156)
T PRK05759         59 AKYEAQLAEARAEAA----EIIEQAKKRAAQIIEEAKAEAEA----EAARIKAQAQAEIEQERKRAREELRKQVADLAVA  130 (156)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666666    88888888888887777666553    2223344555555566666666655555544443


Q ss_pred             HHHhhcCC
Q 028203          103 SLLRLKEP  110 (212)
Q Consensus       103 ~l~~l~e~  110 (212)
                      ...++++.
T Consensus       131 ~a~k~l~~  138 (156)
T PRK05759        131 GAEKILGR  138 (156)
T ss_pred             HHHHHHHh
Confidence            33444433

>PRK13429 F0F1 ATP synthase subunit delta; Provisional

Probab=87.89  E-value=1.7  Score=35.25  Aligned_cols=31  Identities=32%  Similarity=0.439  Sum_probs=27.3

Q ss_pred             CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203          166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  198 (212)
Q Consensus       166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~  198 (212)
                      ++.+||+++..  |.-.+|+|+.++|+.+...+
T Consensus       147 ~sligG~~i~~--~~~~iD~Si~~~L~~l~~~l  177 (181)
T PRK13429        147 PSLIGGVVVKI--GDKVLDASVRTQLRRLKETL  177 (181)
T ss_pred             hhhhCceEEEE--CCEEEehhHHHHHHHHHHHH
Confidence            37899999998  77999999999998887765

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=87.79  E-value=11  Score=29.26  Aligned_cols=95  Identities=14%  Similarity=0.206  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN  102 (212)
Q Consensus        23 eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L~q  102 (212)
                      ..++.....|+.++.    .|+..++......++....++..    .....+..++..+-..+..++..+...+..--..
T Consensus        50 ~e~~~~l~~A~~ea~----~i~~~a~~~a~~~~~~~~~~a~~----e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~  121 (147)
T TIGR01144        50 KKAQVILKEAKDEAQ----EIIENANKRGSEILEEAKAEARE----EREKIKAQARAEIEAEKEQAREELRKQVADLSVL  121 (147)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666777777    88888888888777776665543    2334455666566667777777666665554334


Q ss_pred             HHHhhcCCceEEEeccccH-HHHHHHHH
Q 028203          103 SLLRLKEPAVLLRCRKDDH-HLVESVLE  129 (212)
Q Consensus       103 ~l~~l~e~~v~v~~~~~D~-~lv~~~l~  129 (212)
                      ...++.+..+    ++.|. .++..++.
T Consensus       122 ~a~kll~~~l----~~~~~~~lid~~i~  145 (147)
T TIGR01144       122 GAEKIIERNI----DKQAQKDLIDKLVA  145 (147)
T ss_pred             HHHHHHHHHc----CHHHHHHHHHHHHh
Confidence            4444444332    33333 45565554

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=87.49  E-value=9  Score=28.92  Aligned_cols=66  Identities=15%  Similarity=0.181  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           22 EEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA   95 (212)
Q Consensus        22 ~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~   95 (212)
                      ...+++....|+.++.    .|+.+++..++..++....++...    ....+..++-.+-..++.++.++...
T Consensus        53 ~~e~~~~l~~a~~ea~----~i~~~a~~~a~~~~~~~~~ea~~~----~~~~~~~a~~~i~~e~~~a~~~l~~~  118 (132)
T PF00430_consen   53 LAEYEEKLAEAREEAQ----EIIEEAKEEAEKEKEEILAEAEKE----AERIIEQAEAEIEQEKEKAKKELRQE  118 (132)
T ss_dssp             HHHHHHHHHHHHHHHC----HHHHHHCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667777888888    888888888888877776665532    22223344445555555555554443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>CHL00119 atpD ATP synthase CF1 delta subunit; Validated

Probab=87.04  E-value=1.9  Score=35.33  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=27.3

Q ss_pred             CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhch
Q 028203          166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  199 (212)
Q Consensus       166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~  199 (212)
                      ++.+||+++..  |.-.+|+|+.++|+.....+.
T Consensus       149 ~~ligGi~i~~--g~~~~D~Si~~~L~~l~~~l~  180 (184)
T CHL00119        149 PSLIGGFLIKI--GSKVIDTSIKGQLKQLASHLD  180 (184)
T ss_pred             hHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence            37899999998  789999999999988776553

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=86.96  E-value=13  Score=29.20  Aligned_cols=112  Identities=16%  Similarity=0.099  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEV  100 (212)
Q Consensus        21 A~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~i~~v~~~a~~~L  100 (212)
                      +-.+|.+|+..|+++++    .|+..+..+.+....+...+--.+-+-...+.+    ...+..++.+...+-..+..-+
T Consensus        11 ~~~~A~~il~~A~~~a~----~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~----~~~~~~~~~~~~~~e~~l~~l~   82 (166)
T TIGR02499        11 ALAQAQAILAAARQRAE----AILADAEEEAEASRQLGYEQGLEQFWQEAAAQL----AEWQQEAEQLEASLEERLAELV   82 (166)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            45589999999999999    999998887766433322211111111111111    1344455555555544444433


Q ss_pred             HHHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecC
Q 028203          101 LNSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH  150 (212)
Q Consensus       101 ~q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~  150 (212)
                      .+.+.++....       .|-.++..++.++......   ...+.|.|++
T Consensus        83 ~~~~~kil~~~-------~~~e~l~~lv~~al~~~~~---~~~v~I~v~P  122 (166)
T TIGR02499        83 LQALEQILGEY-------DEPERLVRLLRQLLRAVAN---QGRLTLRVHP  122 (166)
T ss_pred             HHHHHHHhCCC-------CCHHHHHHHHHHHHHhCCC---CCceEEEECH
Confidence            35566665542       4445667777766554433   1245666653

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit

Probab=86.69  E-value=2  Score=34.59  Aligned_cols=30  Identities=23%  Similarity=0.443  Sum_probs=26.1

Q ss_pred             CCCCCcEEEEecCCcEEEcccHHHHHHHHHHh
Q 028203          166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRK  197 (212)
Q Consensus       166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~  197 (212)
                      ++.+||+++..  |...+|+|+.++|+.+...
T Consensus       142 ~~ligGi~i~~--~~~~iD~Si~~~L~~l~~~  171 (172)
T TIGR01145       142 KDLIGGVIIRI--GDRVIDGSVRGQLKRLSRQ  171 (172)
T ss_pred             HHHhCceEEEE--CCEEEehhHHHHHHHHHhh
Confidence            38899999998  7899999999999887654

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.

>PRK05758 F0F1 ATP synthase subunit delta; Validated

Probab=86.55  E-value=2  Score=34.66  Aligned_cols=31  Identities=26%  Similarity=0.480  Sum_probs=27.2

Q ss_pred             CCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203          166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  198 (212)
Q Consensus       166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~  198 (212)
                      ++.+||+++..  |...+|+|+.++|+.....+
T Consensus       145 ~~ligG~~i~~--~~~~~d~Si~~~L~~l~~~l  175 (177)
T PRK05758        145 PSLIGGVIIKV--GDRVIDGSVRGKLERLKDAL  175 (177)
T ss_pred             hHHhCceEEEE--CCEEeehhHHHHHHHHHHHh
Confidence            38899999998  77999999999998887765

>PRK12704 phosphodiesterase; Provisional

Probab=86.46  E-value=31  Score=33.02  Aligned_cols=25  Identities=28%  Similarity=0.209  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           13 MVRFIRQEAEEKANEISVSAEEEFN   37 (212)
Q Consensus        13 m~~~I~~EA~eka~eI~~~A~ee~~   37 (212)
                      -...|..+|..+|+++..++..+++
T Consensus        39 eAe~I~keA~~eAke~~ke~~leae   63 (520)
T PRK12704         39 EAKRILEEAKKEAEAIKKEALLEAK   63 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555444444444443

>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]

Probab=84.90  E-value=2.7  Score=35.25  Aligned_cols=29  Identities=28%  Similarity=0.526  Sum_probs=25.7

Q ss_pred             CCCCCcEEEEecCCcEEEcccHHHHHHHHHH
Q 028203          166 PSCSGGVVVASRDGKIVCENTLDARLDVVFR  196 (212)
Q Consensus       166 ~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e  196 (212)
                      +++.||+||+.  |.-.+|-+..+|++.+-.
T Consensus       176 PSI~GGliVei--GdK~vDmSI~tr~q~l~~  204 (210)
T KOG1662|consen  176 PSIIGGLIVEI--GDKYVDMSIKTRLQKLNK  204 (210)
T ss_pred             hhhhcceEEEE--cCeeEeeeHHHHHHHHHH
Confidence            48999999987  899999999999977655

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=83.65  E-value=24  Score=29.29  Aligned_cols=30  Identities=30%  Similarity=0.212  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLV   44 (212)
Q Consensus        15 ~~I~~EA~eka~eI~~~A~ee~~~ek~~iv   44 (212)
                      ..-+..|+.+|..|+..|+.+++..+....
T Consensus        26 ~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~   55 (201)
T PF12072_consen   26 RKKLEQAEKEAEQILEEAEREAEAIKKEAE   55 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566666666666666666664333333

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=82.19  E-value=24  Score=28.26  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           26 NEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE   63 (212)
Q Consensus        26 ~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~   63 (212)
                      +.-+.+|+.++.    .|+..++.+.+...+....+++
T Consensus        64 ~~~l~~Ar~~a~----~Ii~~A~~~a~~~~~e~~~~a~   97 (161)
T COG0711          64 EQELEEAREQAS----EIIEQAKKEAEQIAEEIKAEAE   97 (161)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444    6666655555555555444433

>PRK00106 hypothetical protein; Provisional

Probab=81.99  E-value=51  Score=31.84  Aligned_cols=9  Identities=22%  Similarity=0.121  Sum_probs=5.2

Q ss_pred             CCcEEEEec
Q 028203          169 SGGVVVASR  177 (212)
Q Consensus       169 ~GGvvl~s~  177 (212)
                      .+-|+|+|.
T Consensus       265 p~~v~lS~f  273 (535)
T PRK00106        265 PEVVVLSGF  273 (535)
T ss_pred             CCeEEEeCC
Confidence            355666663

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=81.42  E-value=30  Score=28.75  Aligned_cols=28  Identities=32%  Similarity=0.290  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           10 IQQMVRFIRQEAEEKANEISVSAEEEFN   37 (212)
Q Consensus        10 i~~m~~~I~~EA~eka~eI~~~A~ee~~   37 (212)
                      ...-...|+.+|+.+|+.+..++.-++.
T Consensus        32 A~~~A~~i~~~A~~eAe~~~ke~~~eak   59 (201)
T PF12072_consen   32 AEKEAEQILEEAEREAEAIKKEAELEAK   59 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566777777777777666666666

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
4dl0_J	233	Crystal Structure Of The Heterotrimeric Egchead Per		8e-20
2kz9_A	69	Structure Of E1-69 Of Yeast V-Atpase Length = 69		2e-04

>pdb|4DL0|J Chain J, Crystal Structure Of The Heterotrimeric Egchead Peripheral Stalk Complex Of The Yeast Vacuolar Atpase Length = 233

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 111/219 (50%), Gaps = 27/219 (12%)
Query: 6   VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR 65
           V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+  + 
Sbjct: 13  VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLS 72
Query: 66  KKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS-------------KEVLNS-----LLRL 107
           ++I  S   N  R+KVL A++  +  + E                K +L S     LL+L
Sbjct: 73  QQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKL 132
Query: 108 KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXS 167
            EP  +++  + D  L+ES+ +    EY +K Q  P E IV  + YL             
Sbjct: 133 LEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLNKDL--------- 183
Query: 168 CSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 206
            SGGVVV++   KI   NTL+ RL ++  + LP IR +L
Sbjct: 184 VSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLEL 222

>pdb|2KZ9|A Chain A, Structure Of E1-69 Of Yeast V-Atpase Length = 69

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 6  VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62
          V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+ 
Sbjct: 13 VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKA 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	3e-37
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	2e-27
2kz9_A	69	V-type proton ATPase subunit E; V-ATPase, proton t	7e-24
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	1e-08
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-05

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A Length = 198

 Score =  127 bits (321), Expect = 3e-37
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 36/214 (16%)

Query: 9   QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKI 68
             + +++ I +EAE K   I   A ++    K +     + K      R + Q E+ K+ 
Sbjct: 3   GAELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQR 62

Query: 69  EYSMQLNASRIKVLQAQDDLVSNMMEAASKE----------------VLNSLLRLKEPAV 112
             +      R K L  Q++++S+++E   +                 +  ++  L E  V
Sbjct: 63  IIANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSEDEYFESVKALLKEAIKELNEKKV 122

Query: 113 LLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGV 172
            +   +    L+ S +E  K E           +                       GGV
Sbjct: 123 RVMSNEKTLGLIASRIEEIKSELGDVSIELGETV--------------------DTMGGV 162

Query: 173 VVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 206
           +V + DG+I  +NT +AR++    +    I K L
Sbjct: 163 IVETEDGRIRIDNTFEARMERFEGEIRSTIAKVL 196

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J Length = 187

 Score =  102 bits (255), Expect = 2e-27
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 56/221 (25%)

Query: 3   DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62
           +A +S++++  ++ + QEAE KA  +   AEE+       L++A ++ +  +Y    ++ 
Sbjct: 4   EAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAK----ALLQARERALEAQYRAALRRA 59

Query: 63  EIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE-----------------VLNSLL 105
           E   ++              QA+ +++  +     +                   L +L 
Sbjct: 60  ESAGELL-------VATARTQARGEVLEEVRRRVREALEALPQKPEWPEVVRKLALEALE 112

Query: 106 RLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHG 165
            L     L+    +D   +E++      E   +                           
Sbjct: 113 ALPGAKALV-ANPEDLPHLEALARERGVELQAE--------------------------- 144

Query: 166 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 206
           P+   GV     +GK   EN+L ARLD  +     ++ + L
Sbjct: 145 PALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQAL 185

>2kz9_A V-type proton ATPase subunit E; V-ATPase, proton transport; NMR {Saccharomyces cerevisiae} Length = 69

 Score = 89.1 bits (221), Expect = 7e-24
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 1  MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
          +    V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K
Sbjct: 8  LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLK 67

Query: 61 Q 61
          +
Sbjct: 68 K 68

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii} Length = 106

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 16/108 (14%)

Query: 100 VLNSLLRLKEPAVLLRCRKDDHHLVE-SVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGP 158
           + +  + L    +++R  K D  L++ S L + ++E     +              P   
Sbjct: 13  IKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKKV-----TVLKKGEPV-- 65

Query: 159 GHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 206
                     +GG ++ + DG    +N+L+A  +         I ++L
Sbjct: 66  --------DIAGGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEKL 105

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 41.3 bits (96), Expect = 6e-05
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 8   KQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK 67
            ++ Q    IR+  EE+   +         + + +  E  KK + +  +R+ +QVE  K 
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAAS-KVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	100.0
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	99.98
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	99.95
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	99.89
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	97.57
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	97.38
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	97.11
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	94.76
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	94.19
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	93.43
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	90.4
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	88.96
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	84.41
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	82.39

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=100.00  E-value=2.4e-51  Score=348.15  Aligned_cols=203  Identities=34%  Similarity=0.522  Sum_probs=188.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK   80 (212)
Q Consensus         1 ~~~~~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~   80 (212)
                      |+|+||++||++|++||++||++||+||..+|++||+++|.+++++++.++...|+++.++++.++++..|+..+++|+.
T Consensus         8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~   87 (233)
T 4efa_E            8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK   87 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH------------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCC
Q 028203           81 VLQAQDDLVSNMMEAASKEVL------------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH  142 (212)
Q Consensus        81 iL~ar~e~i~~v~~~a~~~L~------------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~  142 (212)
                      +|.+|+++|+++|+.|+++|.                  +++..+.+|.++|+|+|.|..+|+++++++..+|+..+|..
T Consensus        88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~  167 (233)
T 4efa_E           88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRA  167 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999997                  67778889999999999999999999999999999988864


Q ss_pred             CCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcCCCCC
Q 028203          143 PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA  212 (212)
Q Consensus       143 ~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~~~~~  212 (212)
                      .....++...+|++         .+|.|||+|+|.||+|+|||||++||++++++++|+||+.|||.||+
T Consensus       168 ~~~~~~~~~~~l~~---------~~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~~LFG~~~~  228 (233)
T 4efa_E          168 PLEEIVISNDYLNK---------DLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKT  228 (233)
T ss_dssp             CCCEEEECSSCCCT---------TTCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred             CccccccccccCCc---------ccccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCcCCC
Confidence            44333444567765         48999999999999999999999999999999999999999999985

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=99.98  E-value=3e-30  Score=211.66  Aligned_cols=164  Identities=19%  Similarity=0.264  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 028203           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI-----RKKIEYSMQLNASRIKVLQAQD   86 (212)
Q Consensus        12 ~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~-----~~ri~~s~~l~~~Rl~iL~ar~   86 (212)
                      ++...|..+|+.+|++|+.+|+++++    .|+.+++.++...+....+.++.     .+|+.+++.+ ..|..+|.+|+
T Consensus         2 ~~~~~l~~eA~~~a~~I~~eA~~~a~----~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~l-e~r~~~L~ar~   76 (187)
T 3v6i_A            2 KLEAILSQEVEAEIQALLQEAEAKAE----AVKREAEEKAKALLQARERALEAQYRAALRRAESAGEL-LVATARTQARG   76 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            45677888888888888888888888    88888888777776666554443     2455666766 55669999999


Q ss_pred             HHHHHHHHHHHHHHH-----------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEec
Q 028203           87 DLVSNMMEAASKEVL-----------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD  149 (212)
Q Consensus        87 e~i~~v~~~a~~~L~-----------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd  149 (212)
                      ++|++||+.|+++|.                 +++..+.+|+++| |+|.|..+++.++++    |    |   +++..+
T Consensus        77 eli~~v~~~a~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~----~----~---~~~~~~  144 (187)
T 3v6i_A           77 EVLEEVRRRVREALEALPQKPEWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE----R----G---VELQAE  144 (187)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH----H----T---CEEEEC
T ss_pred             HHHHHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh----c----C---eeeCCC
Confidence            999999999999998                 5555677888866 999999999988764    2    2   333221


Q ss_pred             CCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcC
Q 028203          150 HHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  208 (212)
Q Consensus       150 ~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~  208 (212)
                                      .+|.|||+|++.||+|+|||||++||+.++++++|+|++.|||
T Consensus       145 ----------------~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~~~LFg  187 (187)
T 3v6i_A          145 ----------------PALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQALWG  187 (187)
T ss_dssp             ----------------TTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ----------------CcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHHHHhcC
Confidence                            4799999999999999999999999999999999999999998

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=99.95  E-value=1.7e-28  Score=200.41  Aligned_cols=172  Identities=22%  Similarity=0.326  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQ   85 (212)
Q Consensus         6 ~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar   85 (212)
                      +-++-+.+.++|+++|+++|++|..+|+++|+.++..+++++..++.           ...+...|...+..|..++.+|
T Consensus        11 il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~-----------~~~~~~~s~~~~~~r~~~l~~~   79 (198)
T 2dm9_A           11 INKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAE-----------LEKQRIIANARLEVRRKRLAIQ   79 (198)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence            34456667777777777777777777777777777777766644333           2333345555667777999999


Q ss_pred             HHHHHHHHHHHHHHHH----------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEec
Q 028203           86 DDLVSNMMEAASKEVL----------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD  149 (212)
Q Consensus        86 ~e~i~~v~~~a~~~L~----------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd  149 (212)
                      +++++.+|..|.+.|.                +++..+.++.+.|+|+|.|..+++.+++.+...|.      ++.++++
T Consensus        80 ~ev~~~~~~~a~~~l~~l~~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~------~~~l~i~  153 (198)
T 2dm9_A           80 EEIISSVLEEVKRRLETMSEDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG------DVSIELG  153 (198)
T ss_dssp             -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT------TCEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc------CceEEEC
Confidence            9999999999998887                44445667889999999999999999988777774      3567775


Q ss_pred             CCcCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcC
Q 028203          150 HHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  208 (212)
Q Consensus       150 ~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~  208 (212)
                      +              +..+.|||+|.+.+|+|.|||||++||+.+++.+.|.|++.|||
T Consensus       154 ~--------------~~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i~~~LF~  198 (198)
T 2dm9_A          154 E--------------TVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG  198 (198)
T ss_dssp             C--------------CCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             C--------------CCCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHHHHHhcC
Confidence            3              14789999999999999999999999999999999999999997

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=1.1e-25  Score=169.34  Aligned_cols=91  Identities=18%  Similarity=0.272  Sum_probs=84.0

Q ss_pred             HHHHhhcCCceEEEeccccHHHHHHH-HHHHHHHHHHHhCCCCCeEEecCCcCCCCCCCCCCCCCCCCCCcEEEEecCCc
Q 028203          102 NSLLRLKEPAVLLRCRKDDHHLVESV-LESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGK  180 (212)
Q Consensus       102 q~l~~l~e~~v~v~~~~~D~~lv~~~-l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dG~  180 (212)
                      |++..+.+|+++|+||++|.++|++. ++++.++|+.++|. ++++++++              +.+|.|||+|++.||+
T Consensus        15 q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~-~~~v~~~~--------------~~~~~GGvil~s~dg~   79 (106)
T 3lg8_A           15 DGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKK-VTVLKKGE--------------PVDIAGGCIIETADGL   79 (106)
T ss_dssp             HHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSS-CCCCCCCC--------------CCSSSCBCBCSSCSCB
T ss_pred             HHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCC-eEEEEeCC--------------CccccccEEEEeCCCC
Confidence            88999999999999999999999999 99999999999988 56666653              2589999999999999


Q ss_pred             EEEcccHHHHHHHHHHhchHHHHHHhc
Q 028203          181 IVCENTLDARLDVVFRKKLPEIRKQLV  207 (212)
Q Consensus       181 I~~dNTleaRL~~~~e~~~p~I~~~LF  207 (212)
                      |+|||||++||++++++++|+|++.||
T Consensus        80 I~vdNTle~rL~~l~~~~~~eI~~~LF  106 (106)
T 3lg8_A           80 KSLDNSLEAIFNRNLNVIRARITEKLF  106 (106)
T ss_dssp             CCCCSHHHHSHHHHHHHHHHHTTTSCC
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=97.57  E-value=0.00027  Score=45.80  Aligned_cols=40  Identities=25%  Similarity=0.366  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ   53 (212)
Q Consensus        10 i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~   53 (212)
                      |+++++.|+++|+.+|+.|+.+|+.+++    .|+.++..++++
T Consensus         8 le~i~~kI~~eA~~eA~~Il~eA~~eA~----~Ii~eA~~~Ae~   47 (52)
T 2kk7_A            8 VDKIKSKILDDAKAEANKIISEAEAEKA----KILEKAKEEAEK   47 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            7899999999999999999999999999    999988877654

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=97.38  E-value=0.00013  Score=58.38  Aligned_cols=175  Identities=14%  Similarity=0.197  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL   88 (212)
Q Consensus         9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri~~s~~l~~~Rl~iL~ar~e~   88 (212)
                      -++++++.|+++|+.++++|+.+|+++++    .|+.++..++..++.+...+...+-.......+.    .........
T Consensus         3 ~le~l~~~il~~A~~~a~~il~eA~~~a~----~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s----~~~~~~r~~   74 (198)
T 2dm9_A            3 GAELIIQEINKEAERKIEYILNEARQQAE----KIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIA----NARLEVRRK   74 (198)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            47889999999999999999999999999    9999999888877766666554322111111111    111112222


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCCc--CCCCCCCCCCCCCC
Q 028203           89 VSNMMEAASKEVLNSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHI--YLPPGPGHHNAHGP  166 (212)
Q Consensus        89 i~~v~~~a~~~L~q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~--~L~~~~~~~~~~~~  166 (212)
                      +..+-.+....+.....+.... +   +.+....++..++.++...+    +...+.|.+++..  .+..       .-.
T Consensus        75 ~l~~~~ev~~~~~~~a~~~l~~-l---~~~~y~~~l~~li~e~~~~~----~~~~v~i~v~~~D~~~v~~-------~~~  139 (198)
T 2dm9_A           75 RLAIQEEIISSVLEEVKRRLET-M---SEDEYFESVKALLKEAIKEL----NEKKVRVMSNEKTLGLIAS-------RIE  139 (198)
T ss_dssp             ------CHHHHHHHHHHHHHHH-C---CHHHHHHHHHHHHHHHHHHH----TCSEEEEECCHHHHHHHHH-------THH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-c---CHHHHHHHHHHHHHHHHHHc----CCCCEEEEECHhHHHHHHH-------HHH
Confidence            2222222222222222221111 1   23334567777777655433    2224555554221  0000       000


Q ss_pred             CC-----CCcEEEE---ecCCcEEEcc-----cHHHHHHHHHHhchHHHHHHh
Q 028203          167 SC-----SGGVVVA---SRDGKIVCEN-----TLDARLDVVFRKKLPEIRKQL  206 (212)
Q Consensus       167 ~~-----~GGvvl~---s~dG~I~~dN-----TleaRL~~~~e~~~p~I~~~L  206 (212)
                      ..     .+|+.+.   ...|++++..     .++.-|+..++.+...+...+
T Consensus       140 ~~~~~~~~~~l~i~~~~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i  192 (198)
T 2dm9_A          140 EIKSELGDVSIELGETVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTI  192 (198)
T ss_dssp             HHHHHCTTCEEEECCCCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHH
T ss_pred             HHHHHhcCceEEECCCCCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHH
Confidence            00     2466664   2357788744     689999999999888877654

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=97.11  E-value=0.02  Score=45.75  Aligned_cols=96  Identities=21%  Similarity=0.175  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Q 028203            6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKI--------EYSMQLNAS   77 (212)
Q Consensus         6 ~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k~~~~~~ri--------~~s~~l~~~   77 (212)
                      .+.+-+.-.+.|+.+|+.+|++|+.+|+++++..+..+..+...++...+++....+..+.|.        ..+...+.+
T Consensus         7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a   86 (187)
T 3v6i_A            7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRV   86 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556677899999999999999999999997777777666666666655554433332111        111222233


Q ss_pred             HHHH--H-H--HHHHHHHHHHHHHHHHHH
Q 028203           78 RIKV--L-Q--AQDDLVSNMMEAASKEVL  101 (212)
Q Consensus        78 Rl~i--L-~--ar~e~i~~v~~~a~~~L~  101 (212)
                      +..+  + .  ...++|..++.++...|.
T Consensus        87 ~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~  115 (187)
T 3v6i_A           87 REALEALPQKPEWPEVVRKLALEALEALP  115 (187)
T ss_dssp             HHHHHHGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHhhhCCccHHHHHHHHHHHHHHHcC
Confidence            3111  1 1  256788888888877765

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=94.76  E-value=0.4  Score=31.14  Aligned_cols=21  Identities=19%  Similarity=0.124  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 028203           17 IRQEAEEKANEISVSAEEEFN   37 (212)
Q Consensus        17 I~~EA~eka~eI~~~A~ee~~   37 (212)
                      .+.+|+.++.+|+..|..+++
T Consensus         3 ~L~~Ar~ea~~Ii~~A~~~a~   23 (61)
T 1l2p_A            3 QLKKAKAEAQVIIEQANKRRS   23 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666666

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=94.19  E-value=0.68  Score=29.97  Aligned_cols=52  Identities=19%  Similarity=0.302  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK   60 (212)
Q Consensus         9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~k   60 (212)
                      +...-...|+.+|+..+..|...+..++..+-.+|+..+...|..+..+-+.
T Consensus         6 ~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A~~   57 (61)
T 1l2p_A            6 KAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRARE   57 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566777777777777777777777777779999998888877655443

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=93.43  E-value=0.058  Score=34.60  Aligned_cols=34  Identities=24%  Similarity=0.188  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNI   38 (212)
Q Consensus         5 ~~~~~i~~m~~~I~~EA~eka~eI~~~A~ee~~~   38 (212)
                      ++..+-+.-...|+.+|+.+|++|+.+|+.+++.
T Consensus        14 kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~   47 (52)
T 2kk7_A           14 KILDDAKAEANKIISEAEAEKAKILEKAKEEAEK   47 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556667788999999999999999888873

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=90.40  E-value=0.6  Score=30.33  Aligned_cols=29  Identities=21%  Similarity=0.152  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (212)
Q Consensus        20 EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~   52 (212)
                      +|+.+|.+|+.+|.++++    .|+..+..+++
T Consensus        23 eAE~~A~~iVeeA~~ea~----~ii~eAreeAk   51 (56)
T 2k6i_A           23 LAEEQAVKEIEEAKNRAE----QIKAEAIEEAK   51 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            566667777777777666    66665555443

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=88.96  E-value=8.2  Score=31.38  Aligned_cols=37  Identities=16%  Similarity=0.109  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK   58 (212)
Q Consensus        18 ~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k   58 (212)
                      ..+.+.-..-|..+|++.++    .|..++..+.+.+..+.
T Consensus        14 ~~~i~~m~~fI~qEA~eKA~----EI~~kAeeE~~~ek~~~   50 (233)
T 4efa_E           14 NDELNKMQAFIRKEAEEKAK----EIQLKADQEYEIEKTNI   50 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            33444445667788888888    88887776665444443

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A

Probab=84.41  E-value=0.047  Score=43.82  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=15.3

Q ss_pred             CCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhc
Q 028203          165 GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  198 (212)
Q Consensus       165 ~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~  198 (212)
                      +++.+|||+|.-  |.-++|.|+.+||+.+...+
T Consensus       155 DpsLiGG~~v~v--gd~viD~Sv~~~L~~l~~~L  186 (190)
T 2wss_S          155 DPSIMGGMIVRI--GEKYVDMSAKTKIQKLSRAM  186 (190)
T ss_dssp             ----------------CCTTTTTTTTTTTTCTTT
T ss_pred             ChhHhCeEEEEE--CCEEEehhHHHHHHHHHHHH
Confidence            358999999998  88999999999998776554

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=82.39  E-value=1.8  Score=28.09  Aligned_cols=28  Identities=25%  Similarity=0.223  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           10 IQQMVRFIRQEAEEKANEISVSAEEEFN   37 (212)
Q Consensus        10 i~~m~~~I~~EA~eka~eI~~~A~ee~~   37 (212)
                      -++-...|..+|++++++|+..|++++.
T Consensus        24 AE~~A~~iVeeA~~ea~~ii~eAreeAk   51 (56)
T 2k6i_A           24 AEEQAVKEIEEAKNRAEQIKAEAIEEAK   51 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677889999999999999999988

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	212
d2dm9a1	118	d.81.4.1 (A:81-198) V-type ATP synthase subunit E	1e-16

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 70.6 bits (173), Expect = 1e-16
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 36/136 (26%)

Query: 87  DLVSNMMEAASKEVLN----------------SLLRLKEPAVLLRCRKDDHHLVESVLES 130
           +++S+++E   + +                  ++  L E  V +   +    L+ S +E 
Sbjct: 1   EIISSVLEEVKRRLETMSEDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEE 60

Query: 131 AKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDAR 190
            K E           I +                     GGV+V + DG+I  +NT +AR
Sbjct: 61  IKSELGDV------SIELGE--------------TVDTMGGVIVETEDGRIRIDNTFEAR 100

Query: 191 LDVVFRKKLPEIRKQL 206
           ++    +    I K L
Sbjct: 101 MERFEGEIRSTIAKVL 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d2dm9a1	118	V-type ATP synthase subunit E {Pyrococcus horikosh	99.91
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	96.2
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	95.87

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.91  E-value=4.9e-25  Score=166.43  Aligned_cols=101  Identities=25%  Similarity=0.377  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHH----------------HHHHhhcCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEEecCC
Q 028203           88 LVSNMMEAASKEVL----------------NSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHH  151 (212)
Q Consensus        88 ~i~~v~~~a~~~L~----------------q~l~~l~e~~v~v~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~  151 (212)
                      +|+++|++|.++|.                +++..+.+++++|+|+|+|..+++++++++..+|+      ++.++++. 
T Consensus         2 ~i~~v~~~a~~~l~~~~~~~Y~~~L~~Li~~a~~~l~~~ev~v~~~~~D~~~v~~~~~~~~~~~~------~~~~~~~~-   74 (118)
T d2dm9a1           2 IISSVLEEVKRRLETMSEDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG------DVSIELGE-   74 (118)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT------TCEEEECC-
T ss_pred             HHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHHHHHcC------CceeEeCC-
Confidence            45555555555555                67777889999999999999999999997766654      35666653 


Q ss_pred             cCCCCCCCCCCCCCCCCCCcEEEEecCCcEEEcccHHHHHHHHHHhchHHHHHHhcC
Q 028203          152 IYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  208 (212)
Q Consensus       152 ~~L~~~~~~~~~~~~~~~GGvvl~s~dG~I~~dNTleaRL~~~~e~~~p~I~~~LF~  208 (212)
                                   +++|.|||||+|.||+|.|||||++||+.+|++++|+|++.|||
T Consensus        75 -------------~~~~~GGvil~s~dG~I~vdnTle~rl~~~~e~~~~~i~~~LFG  118 (118)
T d2dm9a1          75 -------------TVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG  118 (118)
T ss_dssp             -------------CCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             -------------CCccCCCEEEEecCCCEEEECcHHHHHHHHHHHhHHHHHHHccC
Confidence                         25899999999999999999999999999999999999999998

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.029  Score=35.70  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203           18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER   57 (212)
Q Consensus        18 ~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~   57 (212)
                      +.+|+.+|.+|+..|+...+    .||++.+.+...+.++
T Consensus         4 L~eAK~eAa~Ii~qA~~ra~----qIveeak~~A~~Ea~r   39 (61)
T d1l2pa_           4 LKKAKAEAQVIIEQANKRRS----QILDEAKAEAEQERTK   39 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            34555555555555555555    5555555554444433

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.054  Score=34.37  Aligned_cols=51  Identities=20%  Similarity=0.300  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028203            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKE   59 (212)
Q Consensus         9 ~i~~m~~~I~~EA~eka~eI~~~A~ee~~~ek~~iv~~~~~ki~~e~~~k~   59 (212)
                      +-+.-...|+.+|+..+.+|+.+|..++..|..+|+..+...|+.+..+-.
T Consensus         6 eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~   56 (61)
T d1l2pa_           6 KAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAR   56 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445567789999999999999999999999999999999999988866543