Citrus Sinensis ID: 028222

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNRIQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccEEEEcccccccHHHHccccccccccEEcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHccccccccEEccccccHHHHHccHHHHHccEEEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccEEEcccc
Coil and Loop (DISEMBL)
mfrhiskggwtfsdkdhglpvsdcssesfvcclhlstmppeivgekmeperfydaANFMLYIQSKtggitgwepagapswiellnpieflDEVIIEHDYVECTASALKAMTLFQKlypkhkknevNNFITngvkftedsqkldgswygtwGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNiqcddggwgesylscpnklhmnriq
Flexible Loop (DISEMBL)
mfrhiskggwtfsdkdhgLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGEsylscpnklhmnriq
Low Complexity Region (SEG)
MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNRIQ
Disordered region (IsUnstruct)
*********WTF****HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPN********
Disordered Region (DISOPRED)
*FRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPP***GEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN***
Disordered Region (DISEMBL)
MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNRIQ
Disordered Region (DISPRO)
*****SKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNRIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q9MB42	765	Beta-amyrin synthase OS=G	N/A	no	0.981	0.271	0.634	6e-82
E2IUA6	779	Taraxerol synthase OS=Kal	N/A	no	0.981	0.267	0.629	1e-81
O82140	763	Beta-Amyrin Synthase 1 OS	N/A	no	0.981	0.272	0.629	1e-81
A8CDT2	759	Beta-amyrin synthase OS=B	N/A	no	0.981	0.274	0.639	2e-81
E2IUA8	767	Friedelin synthase OS=Kal	N/A	no	0.981	0.271	0.629	4e-81
A8CDT3	761	Lupeol synthase OS=Brugui	N/A	no	0.981	0.273	0.629	9e-81
E2IUA9	765	Lupeol synthase OS=Kalanc	N/A	no	0.966	0.267	0.629	5e-80
A8C980	759	Germanicol synthase OS=Rh	N/A	no	0.966	0.270	0.643	5e-80
E2IUA7	767	Glutinol synthase OS=Kala	N/A	no	0.966	0.267	0.624	6e-80
Q2XPU7	769	Lupeol synthase OS=Ricinu	N/A	no	0.981	0.270	0.620	3e-79

>sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase OS=Glycyrrhiza glabra GN=GgbAS1 PE=1 SV=1

 Score =  303 bits (776), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 165/208 (79%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WTFSD+DHG  VSDC++E   CCL LS +PPEIVGEKMEPER YD+ N +L
Sbjct: 463 MYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSMLPPEIVGEKMEPERLYDSVNVLL 522

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG++ WEPAGA  W+ELLNP EF  ++++EH+YVECT SA++A+ LF+KLYP H
Sbjct: 523 SLQSKKGGLSAWEPAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKLYPGH 582

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +K E+ NFI N V+F ED+Q  DGSWYG WGVCF Y +W+A+ GL AA KT++NC AIRK
Sbjct: 583 RKKEIENFIANAVRFLEDTQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTFANCAAIRK 642

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
           A  FLL  Q +DGGWGESYLS P K+++
Sbjct: 643 AVKFLLTTQREDGGWGESYLSSPKKIYV 670

Oxidosqualene cyclase converting oxidosqualene into beta-amyrin, generating five rings and eight asymmetric centers in a single transformation. Required for the production of soyasaponins and glycyrrhizin.
Glycyrrhiza glabra (taxid: 49827)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 3EC: 9

>sp|E2IUA6|TARS_KALDA Taraxerol synthase OS=Kalanchoe daigremontiana PE=1 SV=1

 Score =  302 bits (774), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 161/208 (77%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M RHISKG WTFSD+DHG  VSDC++E   CCL  S MPPE+VGEKMEPER YD+ N +L
Sbjct: 482 MHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFSLMPPELVGEKMEPERLYDSVNILL 541

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG+  WEPAGAP W+ELLNP EF  +++IEH+YVECTASA++A+ LF+KLYP H
Sbjct: 542 SLQSKNGGLAAWEPAGAPEWLELLNPTEFFADIVIEHEYVECTASAIQALVLFKKLYPGH 601

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +K ++  FI    ++ ED Q  DGSWYG+WGVCF Y TW+A+ GL AA K Y NC AIRK
Sbjct: 602 RKKDIETFIKGAAQYIEDRQMPDGSWYGSWGVCFTYGTWFALGGLAAAGKNYDNCAAIRK 661

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
            T+FLLN QC++GGWGESY SCP K ++
Sbjct: 662 GTEFLLNTQCENGGWGESYRSCPEKRYV 689

Oxidosqualene cyclase that generates taraxerol, a triterpenoid product. Taraxerol is probably required to coat the leaf exterior as a defense compound against pathogens or herbivores.

Kalanchoe daigremontiana (taxid: 23013)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 5

>sp|O82140|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1

 Score =  302 bits (773), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 167/208 (80%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WTFSD+DHG  VSDC++E   CCL  STMP EIVG+K++PER YD+ N +L
Sbjct: 464 MYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLIFSTMPEEIVGKKIKPERLYDSVNVLL 523

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +Q K GG++ WEPAGA  W+ELLNP EF  +++IEH+YVECT+SA++A+ LF+KLYP H
Sbjct: 524 SLQRKNGGLSAWEPAGAQEWLELLNPTEFFADIVIEHEYVECTSSAIQALVLFKKLYPGH 583

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +K E++NFITN V++ ED+Q  DGSWYG WGVCF Y +W+A+ GL AA KTY NC A+RK
Sbjct: 584 RKKEIDNFITNAVRYLEDTQMPDGSWYGNWGVCFTYGSWFALGGLAAAGKTYYNCAAVRK 643

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
           A +FLL  Q DDGGWGESYLSCP K+++
Sbjct: 644 AVEFLLKSQMDDGGWGESYLSCPKKVYV 671

Oxidosqualene cyclase converting oxidosqualene into beta-amyrin, generating five rings and eight asymmetric centers in a single transformation.

Panax ginseng (taxid: 4054)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 9

>sp|A8CDT2|BAS_BRUGY Beta-amyrin synthase OS=Bruguiera gymnorhiza GN=BAS PE=1 SV=1

 Score =  301 bits (772), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 133/208 (63%), Positives = 163/208 (78%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WTFSD+DHG  VSDC++E   CCL  S MPPEIVGE M PER YD+ N +L
Sbjct: 463 MYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFSMMPPEIVGEHMVPERLYDSVNVLL 522

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG++ WEPAGA  W+ELLNP EF  +++IEH+YVECT+SA+ A+ LF+KLYP H
Sbjct: 523 SLQSKNGGLSAWEPAGAQEWLELLNPTEFFADIVIEHEYVECTSSAIHALVLFKKLYPGH 582

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +K E++NFI N V++ E  Q  DG WYG WGVCF Y TW+A+ GL AA KTY+NCLA+RK
Sbjct: 583 RKKEIDNFIVNAVRYLESIQTSDGGWYGNWGVCFTYGTWFALGGLAAAGKTYNNCLAMRK 642

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
           A DFLL IQ D+GGWGESYLSCP K ++
Sbjct: 643 AVDFLLRIQRDNGGWGESYLSCPEKRYV 670

Oxidosqualene cyclase involved in the biosynthesis of beta-amyrin.

Bruguiera gymnorhiza (taxid: 39984)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 9

>sp|E2IUA8|FRIES_KALDA Friedelin synthase OS=Kalanchoe daigremontiana PE=1 SV=1

 Score =  300 bits (768), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 162/208 (77%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WTFSD+DHG  +SDC++E   CCL  S M PE+VGE M PER YD+ N +L
Sbjct: 463 MYRHISKGAWTFSDQDHGWQLSDCTAEGLKCCLLFSLMQPEVVGEAMPPERLYDSVNVLL 522

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
           Y+QSK GG+ GWEPAG   W+ELLNP EF + ++IEH+YVECT+SA++A+ LF+KLYP H
Sbjct: 523 YLQSKNGGMPGWEPAGESEWLELLNPTEFFENIVIEHEYVECTSSAVQALVLFKKLYPLH 582

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           ++ EV  FITNG K+ ED Q  DGSWYG WGVCF Y  W+A+ GL AA KTY+NC A+RK
Sbjct: 583 RRKEVERFITNGAKYLEDIQMPDGSWYGNWGVCFTYGAWFALEGLSAAGKTYNNCAAVRK 642

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
             DFLLNIQ +DGGWGESY SCP+K ++
Sbjct: 643 GVDFLLNIQLEDGGWGESYQSCPDKKYV 670

Oxidosqualene cyclase that generates friedelin, a triterpenoid product with the maximum number of rearrangements possible. Friedelin is probably required to coat the leaf exterior as defense compound against pathogens or herbivores.

Kalanchoe daigremontiana (taxid: 23013)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 5

EC: 0

>sp|A8CDT3|LUPS_BRUGY Lupeol synthase OS=Bruguiera gymnorhiza GN=LUS PE=1 SV=1

 Score =  299 bits (766), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 166/208 (79%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           MFRHISKG WTFSDKDHG  VSDC++ES  CCL  S MPPE+VGEKM P+R YDA N ++
Sbjct: 462 MFRHISKGSWTFSDKDHGWQVSDCTAESLKCCLLFSMMPPELVGEKMGPQRMYDAVNVII 521

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG + WEPAGA SW+E LNP+EFL +++IEH+YVECT+S+L+A+ LF+KLYP+H
Sbjct: 522 SLQSKNGGCSAWEPAGAGSWMEWLNPVEFLADLVIEHEYVECTSSSLQALVLFKKLYPEH 581

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           ++ E+  FI N V+FTE+ Q+ DGSWYG WG+CF+  TW+ + GL AA KTY NC A+RK
Sbjct: 582 RRKEIEIFILNAVRFTEEIQQPDGSWYGNWGICFLSGTWFGLKGLAAAGKTYYNCTAVRK 641

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
             +FLL  Q DDGGWGESYLSCP K+++
Sbjct: 642 GVEFLLQTQRDDGGWGESYLSCPKKIYV 669

Oxidosqualene cyclase involved in the biosynthesis of lupeol.

Bruguiera gymnorhiza (taxid: 39984)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 4

EC: 1

>sp|E2IUA9|LUPS_KALDA Lupeol synthase OS=Kalanchoe daigremontiana PE=1 SV=1

 Score =  296 bits (759), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 129/205 (62%), Positives = 159/205 (77%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WTFSD+DHG  VSDC++E   CCL  S M PE+VGE M PE  Y++ N +L
Sbjct: 463 MYRHISKGAWTFSDQDHGWQVSDCTAEGLKCCLLFSMMQPEVVGESMAPESLYNSVNVLL 522

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QS+ GG+  WEPAGAP W+ELLNP EF + ++IEH+YVECT+SA++A+ LF+KLYP H
Sbjct: 523 SLQSQNGGLPAWEPAGAPEWLELLNPTEFFENIVIEHEYVECTSSAVQALVLFKKLYPLH 582

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           ++ EV  FITNG K+ ED Q  DGSWYG WGVCF Y  W+A+ GL AA KTY+NC A+RK
Sbjct: 583 RRKEVERFITNGAKYLEDIQMPDGSWYGNWGVCFTYGAWFALEGLSAAGKTYNNCAAVRK 642

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNK 205
             DFLLNIQ +DGGWGESY SCP+K
Sbjct: 643 GVDFLLNIQLEDGGWGESYQSCPDK 667

Oxidosqualene cyclase that generates lupeol, a triterpenoid product. Lupeol is probably required to coat the leaf exterior as a defense compound against pathogens or herbivores.

Kalanchoe daigremontiana (taxid: 23013)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 4

EC: 1

>sp|A8C980|GERS_RHISY Germanicol synthase OS=Rhizophora stylosa GN=M1 PE=1 SV=1

 Score =  296 bits (759), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 132/205 (64%), Positives = 160/205 (78%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WTFSD+DHG  VSDC++E   CCL  S MPPEIVGE MEPER YD+ N +L
Sbjct: 463 MYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFSMMPPEIVGEHMEPERLYDSVNVLL 522

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG++ WEPAGA  W+ELLNP EF  +++IEH+YVE T+SA+ A+ LF+KLYP H
Sbjct: 523 SLQSKNGGLSAWEPAGAQDWLELLNPTEFFADIVIEHEYVERTSSAIHALVLFKKLYPGH 582

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +K E+ +FI   V+F E  Q  DG+WYG WGVCF Y TW+A+ GL AA KTY++CLA+RK
Sbjct: 583 RKKEIEDFIAKSVRFLESIQTSDGTWYGNWGVCFTYGTWFALGGLAAAGKTYNSCLAMRK 642

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNK 205
           A DFLL IQ DDGGWGESYLSCP K
Sbjct: 643 AVDFLLRIQKDDGGWGESYLSCPEK 667

Multifunctional triterpene synthase producing germanicol, beta-amyrin and lupeol in the ratio 63:33:4.

Rhizophora stylosa (taxid: 98588)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 4

>sp|E2IUA7|GLUTS_KALDA Glutinol synthase OS=Kalanchoe daigremontiana PE=1 SV=1

 Score =  296 bits (759), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 128/205 (62%), Positives = 160/205 (78%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WTFSD+DHG  +SDC++E   CCL  S M PE+VGE M PER +D+ N +L
Sbjct: 463 MYRHISKGSWTFSDQDHGWQLSDCTAEGLKCCLLFSLMQPEVVGEAMPPERLFDSVNILL 522

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
           Y+QSK GG+ GWEPAGA  W+ELLNP EF + ++IEH+YVECT+SA++A+ LF+KL+P H
Sbjct: 523 YLQSKNGGMPGWEPAGASEWLELLNPTEFFENIVIEHEYVECTSSAVQALVLFKKLHPGH 582

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           ++ EV  FITNG K+ ED Q  DG+WYG WGVCF Y  W+A+ GL AA KTY+NC A+RK
Sbjct: 583 RRKEVERFITNGAKYIEDIQMPDGAWYGNWGVCFTYGAWFALGGLAAAGKTYNNCAAVRK 642

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNK 205
             DFLL IQ +DGGWGESY SCP+K
Sbjct: 643 GVDFLLRIQLEDGGWGESYQSCPDK 667

Oxidosqualene cyclase that generates glutinol, a triterpenoid product. Glutinol is probably required to coat the leaf exterior as a defense compound against pathogens or herbivores.

Kalanchoe daigremontiana (taxid: 23013)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 4

EC: 9

>sp|Q2XPU7|LUPS_RICCO Lupeol synthase OS=Ricinus communis PE=1 SV=1

 Score =  294 bits (753), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 163/208 (78%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           MFRHISKG WTFSDKD G  VSDC++ES  CCL  S MPPEIVGEKMEPE+ YD+ N +L
Sbjct: 462 MFRHISKGAWTFSDKDQGWQVSDCTAESLKCCLLFSMMPPEIVGEKMEPEKVYDSVNVIL 521

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QS+ GG T WEPA A SW+E LNP+EF++++++EH+YVECT+SA++A+ LF+KLYP+H
Sbjct: 522 SLQSQNGGFTAWEPARAGSWMEWLNPVEFMEDLVVEHEYVECTSSAIQALVLFKKLYPRH 581

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +  E+ N I N  +F E+ Q+ DGSWYG WG+CF Y TW+A+ GL AA +TY NC AIRK
Sbjct: 582 RNKEIENCIINAAQFIENIQEPDGSWYGNWGICFSYGTWFALKGLAAAGRTYENCSAIRK 641

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
             DFLL  Q DDGGW ESYLSCP K+++
Sbjct: 642 GVDFLLKSQRDDGGWAESYLSCPKKVYV 669

Oxidosqualene cyclase involved in the biosynthesis of the cuticular lupeol of glaucous individuals, but not of the glossy phenotype.

Ricinus communis (taxid: 3988)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 4

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
224057567	759	predicted protein [Populus trichocarpa]	0.966	0.270	0.663	5e-82
300431227	763	beta-amyrin synthase [Aralia elata]	0.981	0.272	0.644	1e-80
294488497	762	beta-amyrin synthase [Glycyrrhiza uralen	0.981	0.272	0.634	3e-80
75264952	765	RecName: Full=Beta-amyrin synthase gi|67	0.981	0.271	0.634	3e-80
256750576	762	beta-amyrin synthase [Glycyrrhiza uralen	0.981	0.272	0.629	4e-80
403377890	779	RecName: Full=Taraxerol synthase; Short=	0.981	0.267	0.629	6e-80
75220214	763	RecName: Full=Beta-Amyrin Synthase 1 gi|	0.981	0.272	0.629	7e-80
353678016	759	RecName: Full=Beta-amyrin synthase; Shor	0.981	0.274	0.639	9e-80
357467675	670	Beta-amyrin synthase [Medicago truncatul	0.976	0.308	0.642	2e-79
297735720	846	unnamed protein product [Vitis vinifera]	0.966	0.242	0.648	2e-79

>gi|224057567|ref|XP_002299271.1| predicted protein [Populus trichocarpa] gi|222846529|gb|EEE84076.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 136/205 (66%), Positives = 167/205 (81%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           MFRHISKG WTFSDKDHG  VSDC++ES  CCL  STMPPEIVGEKMEP++ +D+ N +L
Sbjct: 460 MFRHISKGSWTFSDKDHGWQVSDCTAESMKCCLLFSTMPPEIVGEKMEPQKLFDSVNILL 519

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG++ WEPAG+  W+E LNP+EFL+++++EH+YVECT+S ++A+ LF+KLYP H
Sbjct: 520 SLQSKNGGVSAWEPAGSGLWLEWLNPVEFLEDLVVEHEYVECTSSTIQALVLFKKLYPGH 579

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +  E+ N I NGVKF E+ QK DGSWYG WG+CFIY TW+A+ GL AA KTYSNCLA+RK
Sbjct: 580 RTKEIQNSIINGVKFIEELQKPDGSWYGNWGICFIYGTWFALGGLAAAGKTYSNCLAVRK 639

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNK 205
             DFLL  Q DDGGWGESYLSCP K
Sbjct: 640 GVDFLLGSQRDDGGWGESYLSCPKK 664

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300431227|gb|ADK12003.1| beta-amyrin synthase [Aralia elata]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 134/208 (64%), Positives = 165/208 (79%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WTFSD+DHG  VSDC++E   CCL  STMP EIVG+KMEPER YD+ N +L
Sbjct: 464 MYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLIFSTMPEEIVGKKMEPERLYDSVNVLL 523

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG+  WEPAGA  W+ELLNP EF  +++IEH+YVECT+SA++A+ LF+KLYP H
Sbjct: 524 SLQSKNGGLAAWEPAGAQEWLELLNPTEFFADIVIEHEYVECTSSAIQALVLFKKLYPGH 583

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +K E++NFI N V++ ED Q  DGSWYG WGVCF Y +W+A+ GL AA KTY NC A+RK
Sbjct: 584 RKKEIDNFIMNAVRYLEDIQMPDGSWYGNWGVCFTYGSWFALGGLAAAGKTYYNCAAVRK 643

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
           A DFLL  Q DDGGWGESYLSCP K+++
Sbjct: 644 AVDFLLKSQMDDGGWGESYLSCPKKVYV 671

Source: Aralia elata

Species: Aralia elata

Genus: Aralia

Family: Araliaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294488497|gb|ADE88148.1| beta-amyrin synthase [Glycyrrhiza uralensis]

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 165/208 (79%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WTFSD+DHG  VSDC++E   CCL LS +PPEIVGEKMEPER YD+ N +L
Sbjct: 463 MYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSMLPPEIVGEKMEPERLYDSVNVLL 522

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG++ WEPAGA  W+ELLNP EF  ++++EH+YVECT SA++A+ LF+KLYP H
Sbjct: 523 SLQSKKGGLSAWEPAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKLYPGH 582

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +K E+ NFI N V+F ED+Q  DGSWYG WGVCF Y +W+A+ GL AA KT++NC AIRK
Sbjct: 583 RKKEIENFIANAVRFLEDTQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTFANCAAIRK 642

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
           A  FLL  Q +DGGWGESYLS P K+++
Sbjct: 643 AVKFLLTTQREDGGWGESYLSSPKKIYV 670

Source: Glycyrrhiza uralensis

Species: Glycyrrhiza uralensis

Genus: Glycyrrhiza

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75264952|sp|Q9MB42.1|BAMS_GLYGL RecName: Full=Beta-amyrin synthase gi|6730969|dbj|BAA89815.1| beta-amyrin synthase [Glycyrrhiza glabra]

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 165/208 (79%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WTFSD+DHG  VSDC++E   CCL LS +PPEIVGEKMEPER YD+ N +L
Sbjct: 463 MYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSMLPPEIVGEKMEPERLYDSVNVLL 522

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG++ WEPAGA  W+ELLNP EF  ++++EH+YVECT SA++A+ LF+KLYP H
Sbjct: 523 SLQSKKGGLSAWEPAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKLYPGH 582

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +K E+ NFI N V+F ED+Q  DGSWYG WGVCF Y +W+A+ GL AA KT++NC AIRK
Sbjct: 583 RKKEIENFIANAVRFLEDTQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTFANCAAIRK 642

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
           A  FLL  Q +DGGWGESYLS P K+++
Sbjct: 643 AVKFLLTTQREDGGWGESYLSSPKKIYV 670

Source: Glycyrrhiza glabra

Species: Glycyrrhiza glabra

Genus: Glycyrrhiza

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|256750576|gb|ACV21067.1| beta-amyrin synthase [Glycyrrhiza uralensis]

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 165/208 (79%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RH+SKG WTFSD+DHG  VSDC++E   CCL LS +PPEIVGEKMEPER YD+ N +L
Sbjct: 463 MYRHVSKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSMLPPEIVGEKMEPERLYDSVNVLL 522

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG++ WEPAGA  W+ELLNP EF  ++++EH+YVECT SA++A+ LF+KLYP H
Sbjct: 523 SLQSKKGGLSAWEPAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKLYPGH 582

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +K E+ NFI N V+F ED+Q  DGSWYG WGVCF Y +W+A+ GL AA KT++NC AIRK
Sbjct: 583 RKKEIENFIANAVRFLEDTQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTFANCAAIRK 642

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
           A  FLL  Q +DGGWGESYLS P K+++
Sbjct: 643 AVKFLLTTQREDGGWGESYLSSPKKIYV 670

Source: Glycyrrhiza uralensis

Species: Glycyrrhiza uralensis

Genus: Glycyrrhiza

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|403377890|sp|E2IUA6.1|TARS_KALDA RecName: Full=Taraxerol synthase; Short=KdTAS gi|300807974|gb|ADK35123.1| taraxerol synthase [Kalanchoe daigremontiana]

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 161/208 (77%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M RHISKG WTFSD+DHG  VSDC++E   CCL  S MPPE+VGEKMEPER YD+ N +L
Sbjct: 482 MHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFSLMPPELVGEKMEPERLYDSVNILL 541

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG+  WEPAGAP W+ELLNP EF  +++IEH+YVECTASA++A+ LF+KLYP H
Sbjct: 542 SLQSKNGGLAAWEPAGAPEWLELLNPTEFFADIVIEHEYVECTASAIQALVLFKKLYPGH 601

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +K ++  FI    ++ ED Q  DGSWYG+WGVCF Y TW+A+ GL AA K Y NC AIRK
Sbjct: 602 RKKDIETFIKGAAQYIEDRQMPDGSWYGSWGVCFTYGTWFALGGLAAAGKNYDNCAAIRK 661

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
            T+FLLN QC++GGWGESY SCP K ++
Sbjct: 662 GTEFLLNTQCENGGWGESYRSCPEKRYV 689

Source: Kalanchoe daigremontiana

Species: Kalanchoe daigremontiana

Genus: Kalanchoe

Family: Crassulaceae

Order: Saxifragales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75220214|sp|O82140.1|BAMS1_PANGI RecName: Full=Beta-Amyrin Synthase 1 gi|3688600|dbj|BAA33461.1| beta-Amyrin Synthase [Panax ginseng]

 Score =  302 bits (773), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 167/208 (80%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WTFSD+DHG  VSDC++E   CCL  STMP EIVG+K++PER YD+ N +L
Sbjct: 464 MYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLIFSTMPEEIVGKKIKPERLYDSVNVLL 523

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +Q K GG++ WEPAGA  W+ELLNP EF  +++IEH+YVECT+SA++A+ LF+KLYP H
Sbjct: 524 SLQRKNGGLSAWEPAGAQEWLELLNPTEFFADIVIEHEYVECTSSAIQALVLFKKLYPGH 583

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +K E++NFITN V++ ED+Q  DGSWYG WGVCF Y +W+A+ GL AA KTY NC A+RK
Sbjct: 584 RKKEIDNFITNAVRYLEDTQMPDGSWYGNWGVCFTYGSWFALGGLAAAGKTYYNCAAVRK 643

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
           A +FLL  Q DDGGWGESYLSCP K+++
Sbjct: 644 AVEFLLKSQMDDGGWGESYLSCPKKVYV 671

Source: Panax ginseng

Species: Panax ginseng

Genus: Panax

Family: Araliaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353678016|sp|A8CDT2.1|BAS_BRUGY RecName: Full=Beta-amyrin synthase; Short=BgbAS gi|157679391|dbj|BAF80443.1| beta amyrin synthase [Bruguiera gymnorhiza]

 Score =  301 bits (772), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 133/208 (63%), Positives = 163/208 (78%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WTFSD+DHG  VSDC++E   CCL  S MPPEIVGE M PER YD+ N +L
Sbjct: 463 MYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFSMMPPEIVGEHMVPERLYDSVNVLL 522

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG++ WEPAGA  W+ELLNP EF  +++IEH+YVECT+SA+ A+ LF+KLYP H
Sbjct: 523 SLQSKNGGLSAWEPAGAQEWLELLNPTEFFADIVIEHEYVECTSSAIHALVLFKKLYPGH 582

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +K E++NFI N V++ E  Q  DG WYG WGVCF Y TW+A+ GL AA KTY+NCLA+RK
Sbjct: 583 RKKEIDNFIVNAVRYLESIQTSDGGWYGNWGVCFTYGTWFALGGLAAAGKTYNNCLAMRK 642

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
           A DFLL IQ D+GGWGESYLSCP K ++
Sbjct: 643 AVDFLLRIQRDNGGWGESYLSCPEKRYV 670

Source: Bruguiera gymnorhiza

Species: Bruguiera gymnorhiza

Genus: Bruguiera

Family: Rhizophoraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467675|ref|XP_003604122.1| Beta-amyrin synthase [Medicago truncatula] gi|355505177|gb|AES86319.1| Beta-amyrin synthase [Medicago truncatula]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 133/207 (64%), Positives = 161/207 (77%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M RHISKG WTFSD+DHG  VSDC++E   CCL LS +PPEIVGEKMEPER YD+ N +L
Sbjct: 463 MHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSMLPPEIVGEKMEPERLYDSVNVLL 522

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG+  WEPAGA  W+ELLNP EF  ++++EH+YVECT SA++A+ LF+KLYP H
Sbjct: 523 SLQSKKGGLAAWEPAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKLYPGH 582

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +K E+ NFI+  V+F ED Q  DGSWYG WGVCF Y +W+A+ GL AA KTY+NC AIRK
Sbjct: 583 RKKEIENFISEAVRFIEDIQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTYTNCAAIRK 642

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLH 207
           A  FLL  Q +DGGWGESYLS P K+H
Sbjct: 643 AVKFLLTTQREDGGWGESYLSSPKKVH 669

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735720|emb|CBI18407.3| unnamed protein product [Vitis vinifera]

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 133/205 (64%), Positives = 162/205 (79%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WTFSD+DHG  VSDC++E   CCL  S MPPEIVG KMEPER +D+ N +L
Sbjct: 551 MYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFSMMPPEIVGVKMEPERLFDSVNILL 610

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG+  WEPAGA  W+ELLNP EF  +++IEH+YVECTASA++A+ LF+KLYP H
Sbjct: 611 SLQSKNGGLAAWEPAGASEWLELLNPTEFFADIVIEHEYVECTASAIQALVLFKKLYPGH 670

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +K E++NFIT   K+ ED Q  DGSWYG WGVCF Y +W+A+ GL AA KTY NC AIR+
Sbjct: 671 RKKEIDNFITYAAKYIEDIQMPDGSWYGNWGVCFTYGSWFALGGLAAAGKTYHNCHAIRR 730

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNK 205
           A +FLLN Q DDGGWGESY+SCP+K
Sbjct: 731 AVEFLLNSQRDDGGWGESYVSCPDK 755

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
UNIPROTKB|E2IUA6	779	E2IUA6 "Taraxerol synthase" [K	0.981	0.267	0.629	4.8e-78
UNIPROTKB|A8CDT2	759	BAS "Beta-amyrin synthase" [Br	0.981	0.274	0.639	6.2e-78
UNIPROTKB|E2IUA8	767	E2IUA8 "Friedelin synthase" [K	0.981	0.271	0.629	7.9e-78
UNIPROTKB|A8CDT3	761	LUS "Lupeol synthase" [Bruguie	0.981	0.273	0.629	1.6e-77
UNIPROTKB|E2IUA7	767	E2IUA7 "Glutinol synthase" [Ka	0.981	0.271	0.615	9e-77
UNIPROTKB|E2IUA9	765	E2IUA9 "Lupeol synthase" [Kala	0.981	0.271	0.620	1.5e-76
UNIPROTKB|Q2XPU7	769	Q2XPU7 "Lupeol synthase" [Rici	0.981	0.270	0.620	5e-76
UNIPROTKB|Q8W3Z1	779	OSCBPY "Beta-amyrin synthase"	0.966	0.263	0.629	1.3e-75
UNIPROTKB|Q9LRH7	764	OSCPSM "Mixed-amyrin synthase"	0.981	0.272	0.620	1.3e-75
UNIPROTKB|F8WQD0	761	SHS1 "Shionone synthase" [Aste	0.981	0.273	0.576	5.9e-73

UNIPROTKB|E2IUA6 E2IUA6 "Taraxerol synthase" [Kalanchoe daigremontiana (taxid:23013)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 131/208 (62%), Positives = 161/208 (77%)

Query:     1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
             M RHISKG WTFSD+DHG  VSDC++E   CCL  S MPPE+VGEKMEPER YD+ N +L
Sbjct:   482 MHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFSLMPPELVGEKMEPERLYDSVNILL 541

Query:    61 YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
              +QSK GG+  WEPAGAP W+ELLNP EF  +++IEH+YVECTASA++A+ LF+KLYP H
Sbjct:   542 SLQSKNGGLAAWEPAGAPEWLELLNPTEFFADIVIEHEYVECTASAIQALVLFKKLYPGH 601

Query:   121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
             +K ++  FI    ++ ED Q  DGSWYG+WGVCF Y TW+A+ GL AA K Y NC AIRK
Sbjct:   602 RKKDIETFIKGAAQYIEDRQMPDGSWYGSWGVCFTYGTWFALGGLAAAGKNYDNCAAIRK 661

Query:   181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
              T+FLLN QC++GGWGESY SCP K ++
Sbjct:   662 GTEFLLNTQCENGGWGESYRSCPEKRYV 689

GO:0016104 "triterpenoid biosynthetic process" evidence=IDA

GO:0016866 "intramolecular transferase activity" evidence=IDA

UNIPROTKB|A8CDT2 BAS "Beta-amyrin synthase" [Bruguiera gymnorhiza (taxid:39984)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 133/208 (63%), Positives = 163/208 (78%)

Query:     1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
             M+RHISKG WTFSD+DHG  VSDC++E   CCL  S MPPEIVGE M PER YD+ N +L
Sbjct:   463 MYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFSMMPPEIVGEHMVPERLYDSVNVLL 522

Query:    61 YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
              +QSK GG++ WEPAGA  W+ELLNP EF  +++IEH+YVECT+SA+ A+ LF+KLYP H
Sbjct:   523 SLQSKNGGLSAWEPAGAQEWLELLNPTEFFADIVIEHEYVECTSSAIHALVLFKKLYPGH 582

Query:   121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
             +K E++NFI N V++ E  Q  DG WYG WGVCF Y TW+A+ GL AA KTY+NCLA+RK
Sbjct:   583 RKKEIDNFIVNAVRYLESIQTSDGGWYGNWGVCFTYGTWFALGGLAAAGKTYNNCLAMRK 642

Query:   181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
             A DFLL IQ D+GGWGESYLSCP K ++
Sbjct:   643 AVDFLLRIQRDNGGWGESYLSCPEKRYV 670

GO:0016104 "triterpenoid biosynthetic process" evidence=IDA

GO:0042300 "beta-amyrin synthase activity" evidence=IDA

UNIPROTKB|E2IUA8 E2IUA8 "Friedelin synthase" [Kalanchoe daigremontiana (taxid:23013)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 131/208 (62%), Positives = 162/208 (77%)

Query:     1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
             M+RHISKG WTFSD+DHG  +SDC++E   CCL  S M PE+VGE M PER YD+ N +L
Sbjct:   463 MYRHISKGAWTFSDQDHGWQLSDCTAEGLKCCLLFSLMQPEVVGEAMPPERLYDSVNVLL 522

Query:    61 YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
             Y+QSK GG+ GWEPAG   W+ELLNP EF + ++IEH+YVECT+SA++A+ LF+KLYP H
Sbjct:   523 YLQSKNGGMPGWEPAGESEWLELLNPTEFFENIVIEHEYVECTSSAVQALVLFKKLYPLH 582

Query:   121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
             ++ EV  FITNG K+ ED Q  DGSWYG WGVCF Y  W+A+ GL AA KTY+NC A+RK
Sbjct:   583 RRKEVERFITNGAKYLEDIQMPDGSWYGNWGVCFTYGAWFALEGLSAAGKTYNNCAAVRK 642

Query:   181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
               DFLLNIQ +DGGWGESY SCP+K ++
Sbjct:   643 GVDFLLNIQLEDGGWGESYQSCPDKKYV 670

GO:0016104 "triterpenoid biosynthetic process" evidence=IDA

GO:0016866 "intramolecular transferase activity" evidence=IDA

UNIPROTKB|A8CDT3 LUS "Lupeol synthase" [Bruguiera gymnorhiza (taxid:39984)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 131/208 (62%), Positives = 166/208 (79%)

Query:     1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
             MFRHISKG WTFSDKDHG  VSDC++ES  CCL  S MPPE+VGEKM P+R YDA N ++
Sbjct:   462 MFRHISKGSWTFSDKDHGWQVSDCTAESLKCCLLFSMMPPELVGEKMGPQRMYDAVNVII 521

Query:    61 YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
              +QSK GG + WEPAGA SW+E LNP+EFL +++IEH+YVECT+S+L+A+ LF+KLYP+H
Sbjct:   522 SLQSKNGGCSAWEPAGAGSWMEWLNPVEFLADLVIEHEYVECTSSSLQALVLFKKLYPEH 581

Query:   121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
             ++ E+  FI N V+FTE+ Q+ DGSWYG WG+CF+  TW+ + GL AA KTY NC A+RK
Sbjct:   582 RRKEIEIFILNAVRFTEEIQQPDGSWYGNWGICFLSGTWFGLKGLAAAGKTYYNCTAVRK 641

Query:   181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
               +FLL  Q DDGGWGESYLSCP K+++
Sbjct:   642 GVEFLLQTQRDDGGWGESYLSCPKKIYV 669

GO:0016104 "triterpenoid biosynthetic process" evidence=IDA

GO:0042299 "lupeol synthase activity" evidence=IDA

UNIPROTKB|E2IUA7 E2IUA7 "Glutinol synthase" [Kalanchoe daigremontiana (taxid:23013)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 128/208 (61%), Positives = 162/208 (77%)

Query:     1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
             M+RHISKG WTFSD+DHG  +SDC++E   CCL  S M PE+VGE M PER +D+ N +L
Sbjct:   463 MYRHISKGSWTFSDQDHGWQLSDCTAEGLKCCLLFSLMQPEVVGEAMPPERLFDSVNILL 522

Query:    61 YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
             Y+QSK GG+ GWEPAGA  W+ELLNP EF + ++IEH+YVECT+SA++A+ LF+KL+P H
Sbjct:   523 YLQSKNGGMPGWEPAGASEWLELLNPTEFFENIVIEHEYVECTSSAVQALVLFKKLHPGH 582

Query:   121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
             ++ EV  FITNG K+ ED Q  DG+WYG WGVCF Y  W+A+ GL AA KTY+NC A+RK
Sbjct:   583 RRKEVERFITNGAKYIEDIQMPDGAWYGNWGVCFTYGAWFALGGLAAAGKTYNNCAAVRK 642

Query:   181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
               DFLL IQ +DGGWGESY SCP+K ++
Sbjct:   643 GVDFLLRIQLEDGGWGESYQSCPDKKYV 670

GO:0016104 "triterpenoid biosynthetic process" evidence=IDA

GO:0016866 "intramolecular transferase activity" evidence=IDA

UNIPROTKB|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 129/208 (62%), Positives = 161/208 (77%)

Query:     1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
             M+RHISKG WTFSD+DHG  VSDC++E   CCL  S M PE+VGE M PE  Y++ N +L
Sbjct:   463 MYRHISKGAWTFSDQDHGWQVSDCTAEGLKCCLLFSMMQPEVVGESMAPESLYNSVNVLL 522

Query:    61 YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
              +QS+ GG+  WEPAGAP W+ELLNP EF + ++IEH+YVECT+SA++A+ LF+KLYP H
Sbjct:   523 SLQSQNGGLPAWEPAGAPEWLELLNPTEFFENIVIEHEYVECTSSAVQALVLFKKLYPLH 582

Query:   121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
             ++ EV  FITNG K+ ED Q  DGSWYG WGVCF Y  W+A+ GL AA KTY+NC A+RK
Sbjct:   583 RRKEVERFITNGAKYLEDIQMPDGSWYGNWGVCFTYGAWFALEGLSAAGKTYNNCAAVRK 642

Query:   181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
               DFLLNIQ +DGGWGESY SCP+K ++
Sbjct:   643 GVDFLLNIQLEDGGWGESYQSCPDKKYV 670

GO:0016104 "triterpenoid biosynthetic process" evidence=IDA

GO:0016866 "intramolecular transferase activity" evidence=IDA

UNIPROTKB|Q2XPU7 Q2XPU7 "Lupeol synthase" [Ricinus communis (taxid:3988)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 129/208 (62%), Positives = 163/208 (78%)

Query:     1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
             MFRHISKG WTFSDKD G  VSDC++ES  CCL  S MPPEIVGEKMEPE+ YD+ N +L
Sbjct:   462 MFRHISKGAWTFSDKDQGWQVSDCTAESLKCCLLFSMMPPEIVGEKMEPEKVYDSVNVIL 521

Query:    61 YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
              +QS+ GG T WEPA A SW+E LNP+EF++++++EH+YVECT+SA++A+ LF+KLYP+H
Sbjct:   522 SLQSQNGGFTAWEPARAGSWMEWLNPVEFMEDLVVEHEYVECTSSAIQALVLFKKLYPRH 581

Query:   121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
             +  E+ N I N  +F E+ Q+ DGSWYG WG+CF Y TW+A+ GL AA +TY NC AIRK
Sbjct:   582 RNKEIENCIINAAQFIENIQEPDGSWYGNWGICFSYGTWFALKGLAAAGRTYENCSAIRK 641

Query:   181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
               DFLL  Q DDGGW ESYLSCP K+++
Sbjct:   642 GVDFLLKSQRDDGGWAESYLSCPKKVYV 669

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IDA

GO:0042299 "lupeol synthase activity" evidence=IDA

GO:0042335 "cuticle development" evidence=IDA

UNIPROTKB|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 129/205 (62%), Positives = 157/205 (76%)

Query:     1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
             M RHISKG WTFSD+DHG  VSDC++E   CCL  S MPPEIVGEKMEPE+ YD+ N +L
Sbjct:   463 MHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFSIMPPEIVGEKMEPEQLYDSVNVLL 522

Query:    61 YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
              +QSK GG+  WEPAGA  W+ELLN  EF  +++IEH+Y+ECTASA++ + LF+KLYP H
Sbjct:   523 SLQSKNGGLAAWEPAGAQEWLELLNSTEFFADIVIEHEYIECTASAMQTLVLFKKLYPGH 582

Query:   121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
             +K E+ NFI N  +F +  Q  DGSWYG WGVCF Y TW+A+ GL A  KTY+NCLA+R+
Sbjct:   583 RKKEIENFIKNAAQFLQVIQMPDGSWYGNWGVCFTYGTWFALGGLAAVGKTYNNCLAVRR 642

Query:   181 ATDFLLNIQCDDGGWGESYLSCPNK 205
             A DFLL  Q D+GGWGESYLSCP K
Sbjct:   643 AVDFLLRAQRDNGGWGESYLSCPKK 667

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IDA

GO:0042300 "beta-amyrin synthase activity" evidence=IDA

UNIPROTKB|Q9LRH7 OSCPSM "Mixed-amyrin synthase" [Pisum sativum (taxid:3888)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 129/208 (62%), Positives = 163/208 (78%)

Query:     1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
             M+RHISKG WTFSDKDHG  VSDC++ES  CCL LS +PPEIVGEKMEPE  YD+ N +L
Sbjct:   463 MYRHISKGSWTFSDKDHGWQVSDCTAESLKCCLLLSMLPPEIVGEKMEPEMLYDSVNILL 522

Query:    61 YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
              +Q K GG+  WEP+ A  W+EL NPIEFL+E+++E +YVECT+SA++A+ LF+KLYP+H
Sbjct:   523 SLQGKKGGLPAWEPSEAVEWLELFNPIEFLEEIVVEREYVECTSSAIQALVLFKKLYPEH 582

Query:   121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
             +K EV NFI N V+F E  Q  DGSWYG WG+CF Y +W+A++GLVAA KTY NC AIRK
Sbjct:   583 RKKEVENFIANAVRFLEYKQTSDGSWYGNWGICFTYGSWFALNGLVAAGKTYDNCAAIRK 642

Query:   181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
               +FLL  Q +DGGWGES+LS   K+++
Sbjct:   643 GVEFLLTTQREDGGWGESHLSSSKKIYV 670

GO:0005575 "cellular_component" evidence=ND

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IDA

GO:0042300 "beta-amyrin synthase activity" evidence=IDA

GO:0042561 "alpha-amyrin synthase activity" evidence=IDA

UNIPROTKB|F8WQD0 SHS1 "Shionone synthase" [Aster tataricus (taxid:588669)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 120/208 (57%), Positives = 163/208 (78%)

Query:     1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
             M+RHISKG WTFSD+DHG  +SDC++    CCL LSTMPPE VGEKM+PE+  DA N +L
Sbjct:   462 MYRHISKGSWTFSDQDHGWQLSDCTTIGLTCCLLLSTMPPETVGEKMDPEQLKDAVNVIL 521

Query:    61 YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
              +QS+ GG+  WEPAG+ +W+E+LNPIEF+++++IEH+YVECT + ++A+ LF+KLYPKH
Sbjct:   522 SLQSENGGLAAWEPAGSSNWLEMLNPIEFIEDIVIEHEYVECTGTGMEALVLFKKLYPKH 581

Query:   121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
             +  EV +F+TN  ++ +++Q  DGSWYG WG+CF Y T++A+ GL A EKTY NC +IRK
Sbjct:   582 RTKEVESFLTNAARYLDNTQMPDGSWYGEWGICFTYGTYYALGGLAAIEKTYENCQSIRK 641

Query:   181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
             A  FLL  Q +DGGWGESY SC  K+++
Sbjct:   642 AVRFLLKTQGEDGGWGESYRSCAEKIYI 669

GO:0016104 "triterpenoid biosynthetic process" evidence=IDA

GO:0031559 "oxidosqualene cyclase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.4.99	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
PLN02993	763	PLN02993, PLN02993, lupeol synthase	1e-100
PLN03012	759	PLN03012, PLN03012, Camelliol C synthase	1e-98
cd02892	634	cd02892, SQCY_1, Squalene cyclase (SQCY) domain su	2e-85
cd02889	348	cd02889, SQCY, Squalene cyclase (SQCY) domain; fou	5e-77
TIGR01787	621	TIGR01787, squalene_cyclas, squalene/oxidosqualene	1e-65
TIGR03463	634	TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase	3e-53
COG1657	517	COG1657, SqhC, Squalene cyclase [Lipid metabolism]	6e-29
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	2e-20
TIGR01507	635	TIGR01507, hopene_cyclase, squalene-hopene cyclase	4e-14
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	1e-09
pfam13243	109	pfam13243, Prenyltrans_1, Prenyltransferase-like	7e-08
TIGR04277	624	TIGR04277, squa_tetra_cyc, squalene--tetrahymanol	4e-07
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	8e-05
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	5e-04
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	0.003

>gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase

 Score =  304 bits (781), Expect = e-100
 Identities = 114/205 (55%), Positives = 154/205 (75%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WT SD+DHG  VSDC++E+  CC+ LS MP ++VG+K++PE+ YD+ N +L
Sbjct: 464 MYRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLL 523

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QS+ GG+T WEP  A  W+ELLNP +F    ++E +YVECT++ ++A+ LF++LYP H
Sbjct: 524 SLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDH 583

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +  E+   I   V+F E  Q  DGSWYG WG+CFIY+TW+A+ GL AA KTY++CLA+RK
Sbjct: 584 RTKEIIKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRK 643

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNK 205
              FLL IQ DDGGWGESYLSCP +
Sbjct: 644 GVHFLLTIQRDDGGWGESYLSCPEQ 668

Length = 763

>gnl|CDD|166653 PLN03012, PLN03012, Camelliol C synthase

 Score =  301 bits (773), Expect = 1e-98
 Identities = 121/208 (58%), Positives = 160/208 (76%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
           M+RHISKG WTFSD+DHG   SDC++E F CCL  S + P+IVG KM+PE+ +DA N +L
Sbjct: 464 MYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILL 523

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QSK GG+T WEPAGAP W+ELLNP E   +++IEH+Y ECT+SA++A+ LF++LYP H
Sbjct: 524 SLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDH 583

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           +  E+N FI    ++ E+ Q LDGSWYG WG+CF Y TW+A++GL AA KT+++C AIRK
Sbjct: 584 RTEEINAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRK 643

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHM 208
              FLL  Q D+GGWGESYLSCP K+++
Sbjct: 644 GVHFLLAAQKDNGGWGESYLSCPKKIYI 671

Length = 759

>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

 Score =  264 bits (678), Expect = 2e-85
 Identities = 98/205 (47%), Positives = 131/205 (63%), Gaps = 3/205 (1%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
            +RH+ KGGW FS  + G P SD ++E+    L L  +PP   GEK+  ER YDA +++L
Sbjct: 353 KYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPF--GEKVSRERLYDAVDWLL 410

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +Q+  GG   +EP     W+E LNP E   +++I+  YVECT S L+A+ LF KLYP H
Sbjct: 411 GMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGH 470

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           ++ E++  I   VK+    Q+ DGSWYG WGVC+IY TW+A+  L AA + Y N   IRK
Sbjct: 471 RR-EIDPAIRRAVKYLLREQEPDGSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRK 529

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNK 205
           A DFLL+ Q  DGGWGESYLS  +K
Sbjct: 530 ACDFLLSKQNPDGGWGESYLSYEDK 554

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. Length = 634

>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

 Score =  234 bits (600), Expect = 5e-77
 Identities = 91/205 (44%), Positives = 128/205 (62%), Gaps = 6/205 (2%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
            +RH+ KGGW FS  + G P SD ++E+    L L   PP+  G+K+  ER YDA +++L
Sbjct: 70  KYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPD--GKKVSRERLYDAVDWLL 127

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +Q+  GG   +EP     ++EL    E   +++I+  YVECT S L+A+ LF KLYP+H
Sbjct: 128 SMQNSNGGFAAFEPDNTYKYLEL--IPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEH 185

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
           ++ E++  I   VK+ E  Q+ DGSWYG WGVCFIY TW+A+  L AA +   N   +RK
Sbjct: 186 RR-EIDPAIRRAVKYLEREQEPDGSWYGRWGVCFIYGTWFALEALAAAGED-ENSPYVRK 243

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNK 205
           A D+LL+ Q  DGGWGESY S  + 
Sbjct: 244 ACDWLLSKQNPDGGWGESYESYEDP 268

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain. Length = 348

>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases

 Score =  212 bits (542), Expect = 1e-65
 Identities = 74/207 (35%), Positives = 114/207 (55%), Gaps = 13/207 (6%)

Query: 1   MFRHISK-GGWTFSDKDHGLP-VSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANF 58
           ++RH  K GGW FS  + G P V D +  +    L L         E ++ +R  DA N+
Sbjct: 343 VYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQED------EHVKRDRLRDAVNW 396

Query: 59  MLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYP 118
           +L +QS  GG   ++P     W+ELLNP E   +++I+  YV+ TA  ++A+  F     
Sbjct: 397 ILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAF----- 451

Query: 119 KHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAI 178
            H+ +E+ N +   +++    Q+ DGSW+G WGV + Y T + +S L AA +TY NC  +
Sbjct: 452 GHRADEIRNVLERALEYLRREQRADGSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEV 511

Query: 179 RKATDFLLNIQCDDGGWGESYLSCPNK 205
           +KA D+LL+ Q  DGGWGE   S  + 
Sbjct: 512 QKACDWLLSRQMPDGGWGEDCFSYEDP 538

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene , lanosterol , cycloartenol, amyrin, lupeol and isomultiflorenol. Length = 621

>gnl|CDD|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase

 Score =  180 bits (457), Expect = 3e-53
 Identities = 82/203 (40%), Positives = 117/203 (57%), Gaps = 6/203 (2%)

Query: 2   FRHISKGGWTFSDKDHGLPVSDCSSE--SFVCCLHLSTMPPEIVGEKMEPERFYDAANFM 59
           FR  +KGGW FSD DHG PVSDC++E  S    L    + PE   E++   R  DA  F+
Sbjct: 353 FRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPE---ERVPQARLQDAVEFI 409

Query: 60  LYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPK 119
           L  Q++ GG   +E    P  +ELLNP E     + +  YVECT+S L+A+  ++K +P 
Sbjct: 410 LSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPH 469

Query: 120 HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIR 179
                +   I+ GV+F    Q+ DGS+ G+WGVCF Y T+  + GL AA  +  + +A++
Sbjct: 470 VPDGRITRAISRGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGASPDD-MALQ 528

Query: 180 KATDFLLNIQCDDGGWGESYLSC 202
           +A  +L + Q  DGGWGE Y SC
Sbjct: 529 RAAAWLRSYQRADGGWGEVYESC 551

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol , and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol. Length = 634

>gnl|CDD|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism]

 Score =  112 bits (281), Expect = 6e-29
 Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 17/203 (8%)

Query: 3   RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYI 62
           R  S GGW FS+ + G P +D ++   V  L      P           F    +++LY+
Sbjct: 245 RKFSPGGWGFSNINTGYPDADDTAGV-VRALIGVQSLP----------NFELGLDWVLYM 293

Query: 63  QSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKK 122
           Q+K GG+  +E     +W+ LL P E   + +++    +CT   + A+         +  
Sbjct: 294 QNKLGGLAVYEDRNLHAWLRLLPPAEV--KAMVDPSTADCTHRVVLALAALNAYLEAYDG 351

Query: 123 NEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKAT 182
                 I   +++    Q+ DGSWYG WGVC+IY T  A+S L    +T  N + +RK  
Sbjct: 352 QP----IERALEWLLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLI 407

Query: 183 DFLLNIQCDDGGWGESYLSCPNK 205
            +L++ Q  DGGWGE+  +  + 
Sbjct: 408 SWLVSKQMPDGGWGEAKEAISDP 430

Length = 517

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score = 86.5 bits (214), Expect = 2e-20
 Identities = 43/200 (21%), Positives = 66/200 (33%), Gaps = 31/200 (15%)

Query: 6   SKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSK 65
           S GG++     +  P    ++ +    L             ++      A N++L +Q++
Sbjct: 67  SDGGFSGWGG-NDYPSLWLTAYALKALLLAGDY------IAVDRIDLARALNWLLSLQNE 119

Query: 66  TGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEV 125
            GG     P                     +   V  TA AL A+ L  KL P       
Sbjct: 120 DGGFREDGPGNHRI--------------GGDESDVRLTAYALIALALLGKLDPD------ 159

Query: 126 NNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFL 185
              I   + +    Q  DG + G  G    Y T  A + L        +    +KA  +L
Sbjct: 160 -PLIEKALDYLLSCQNYDGGF-GPGGESHGYGTACAAAALALLGDL--DSPDAKKALRWL 215

Query: 186 LNIQCDDGGWGESYLSCPNK 205
           L+ Q  DGGWGE        
Sbjct: 216 LSRQRPDGGWGEGRDRTNKL 235

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|233442 TIGR01507, hopene_cyclase, squalene-hopene cyclase

 Score = 69.9 bits (171), Expect = 4e-14
 Identities = 57/208 (27%), Positives = 86/208 (41%), Gaps = 27/208 (12%)

Query: 4   HISKGGWTFS-DKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD----AANF 58
           ++  GGW F  D  +   V D  +   V  L+   +P E         R  D    A  +
Sbjct: 362 NLEPGGWAFQFDNVYYPDVDD--TAVVVWALNGLRLPDE--------RRRRDAMTKAFRW 411

Query: 59  MLYIQSKTGGITGWEPAGAPSWIELLNPIEFLD-EVIIEHDYVECTASALKAMTLFQKLY 117
           +  +QS  GG   W      +  +LLN I F D   + +    + TA  L+ +  F    
Sbjct: 412 IAGMQSSNGG---WGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDD 468

Query: 118 PKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLA 177
                      I   V++ +  Q+ DGSW+G WGV ++Y T   +S L  A    +    
Sbjct: 469 AWPV-------IERAVEYLKREQEPDGSWFGRWGVNYLYGTGAVLSAL-KAVGIDTREPY 520

Query: 178 IRKATDFLLNIQCDDGGWGESYLSCPNK 205
           I+KA  +L + Q  DGGWGE   S  + 
Sbjct: 521 IQKALAWLESHQNPDGGWGEDCRSYEDP 548

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products [Fatty acid and phospholipid metabolism, Other]. Length = 635

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 103 TASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSW--YGTWGVCFIYSTWW 160
           TA AL A      L       +        + +    Q  DG +          + ST +
Sbjct: 27  TALALLA---LAALGETPDVKKA-------LAWLLSQQNPDGGFGYDPQSNSPDLSSTAY 76

Query: 161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGE 197
           A++ L        +  A+ KA D+LL+ Q  DGG+G 
Sbjct: 77  ALAALELLGGEPDD-EAVEKAVDYLLSCQNPDGGFGY 112

Length = 112

>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 129 ITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNI 188
           +   V++  ++Q  DGSW  + G   +  T      L  A        AI+KA ++LL+ 
Sbjct: 1   LERAVEYILNTQNPDGSWSYSSGGD-VSVTAALARALALAGDARVL-EAIKKAVEWLLDQ 58

Query: 189 QCDDGGWG 196
           Q +DGG+G
Sbjct: 59  QQEDGGFG 66

Length = 109

>gnl|CDD|212000 TIGR04277, squa_tetra_cyc, squalene--tetrahymanol cyclase

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 129 ITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNI 188
           I   +K+  D+Q+  GSW   WG+ +I +    +  L       +   A + A ++LLN 
Sbjct: 459 IQKMIKYFMDTQEKFGSWEARWGINYIMAAGAVLPALAKMNYDLNEGWA-KNAINWLLNK 517

Query: 189 QCDDGGWGESYLS 201
           Q  DGG+GE  LS
Sbjct: 518 QNADGGFGECTLS 530

This enzyme, also called squalene--tetrahymanol cyclase, occurs a small number of eukaryotes, some of them anaerobic. The pathway can occur under anaerobic conditions, and the product is thought to replace sterols, letting organisms with this compound build membrane suitable for performing phagocytosis. Length = 624

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 140 QKLDGSW-YGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES 198
           Q  DG W     G   +  T  A+  L A  +T      ++KA  +LL+ Q  DGG+G  
Sbjct: 8   QNPDGGWGAAVGGGSDVAMTALALLALAALGETPD----VKKALAWLLSQQNPDGGFGYD 63

Length = 112

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 122 KNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTW---WAISGLVAAEKT-YSNCLA 177
           +++ +  I  G++     Q  DG + G WG     S W   +A+  L+ A      + + 
Sbjct: 47  RDKADENIEKGIQRLLSYQLSDGGFSG-WGGNDYPSLWLTAYALKALLLAGDYIAVDRID 105

Query: 178 IRKATDFLLNIQCDDGGWGESY 199
           + +A ++LL++Q +DGG+ E  
Sbjct: 106 LARALNWLLSLQNEDGGFREDG 127

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 34.0 bits (79), Expect = 0.003
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 178 IRKATDFLLNIQCDDGGWGESYLSCP 203
             K  D+LL+ Q  DGG+G       
Sbjct: 3   KEKLVDYLLSCQNPDGGFGGRPGGES 28

Length = 44

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
PLN03012	759	Camelliol C synthase	100.0
PLN02993	763	lupeol synthase	100.0
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	100.0
KOG0497	760	consensus Oxidosqualene-lanosterol cyclase and rel	100.0
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	100.0
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	100.0
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	100.0
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.96
PLN03012	759	Camelliol C synthase	99.96
PLN02993	763	lupeol synthase	99.94
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.93
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.93
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	99.92
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.9
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.86
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.85
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.84
cd00688	300	ISOPREN_C2_like This group contains class II terpe	99.84
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.75
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	99.74
cd00688	300	ISOPREN_C2_like This group contains class II terpe	99.72
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	99.72
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	99.71
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	99.71
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	99.7
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	99.68
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.68
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.67
KOG0497	760	consensus Oxidosqualene-lanosterol cyclase and rel	99.65
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	99.65
KOG0366	329	consensus Protein geranylgeranyltransferase type I	99.6
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	99.59
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	99.57
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	99.56
PLN02710	439	farnesyltranstransferase subunit beta	99.56
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	99.56
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	99.54
PLN02710	439	farnesyltranstransferase subunit beta	99.49
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.47
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	99.42
PF07678	246	A2M_comp: A-macroglobulin complement component; In	99.4
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.4
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	99.37
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	99.31
KOG0365	423	consensus Beta subunit of farnesyltransferase [Pos	99.27
PF09492	289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	99.26
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	99.21
KOG0366	329	consensus Protein geranylgeranyltransferase type I	99.19
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	99.17
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	99.09
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	99.05
PF07678	246	A2M_comp: A-macroglobulin complement component; In	98.92
KOG0367	347	consensus Protein geranylgeranyltransferase Type I	98.89
KOG0367	347	consensus Protein geranylgeranyltransferase Type I	98.75
PF09492	289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	98.59
PF01122	326	Cobalamin_bind: Eukaryotic cobalamin-binding prote	98.58
COG1689	274	Uncharacterized protein conserved in archaea [Func	98.32
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	98.31
KOG0365	423	consensus Beta subunit of farnesyltransferase [Pos	98.21
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	98.09
PF01122	326	Cobalamin_bind: Eukaryotic cobalamin-binding prote	97.45
COG1689	274	Uncharacterized protein conserved in archaea [Func	97.31
PLN02592	800	ent-copalyl diphosphate synthase	96.42
TIGR01577	616	oligosac_amyl oligosaccharide amylase. The name of	96.32
TIGR01535	648	glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc	95.96
PLN02592	800	ent-copalyl diphosphate synthase	95.9
PF07470	336	Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte	95.83
PLN02279	784	ent-kaur-16-ene synthase	95.82
KOG1366	1436	consensus Alpha-macroglobulin [Posttranslational m	95.73
PF07470	336	Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte	95.49
COG2373	1621	Large extracellular alpha-helical protein [General	95.12
PLN02279	784	ent-kaur-16-ene synthase	94.32
cd00249	384	AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d	94.09
PF07944	520	DUF1680: Putative glycosyl hydrolase of unknown fu	93.37
COG4225	357	Predicted unsaturated glucuronyl hydrolase involve	93.33
cd00249	384	AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d	92.67
KOG1366	1436	consensus Alpha-macroglobulin [Posttranslational m	92.22
TIGR01535	648	glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc	92.19
TIGR01577	616	oligosac_amyl oligosaccharide amylase. The name of	85.21
PF07221	346	GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN	84.79
cd04794	343	euk_LANCL eukaryotic Lanthionine synthetase C-like	83.0
COG4225	357	Predicted unsaturated glucuronyl hydrolase involve	82.34
PF07944	520	DUF1680: Putative glycosyl hydrolase of unknown fu	81.71
COG2373	1621	Large extracellular alpha-helical protein [General	81.21

>PLN03012 Camelliol C synthase

Probab=100.00  E-value=6.8e-49  Score=363.32  Aligned_cols=210  Identities=58%  Similarity=1.190  Sum_probs=196.6

Q ss_pred             CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222            1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW   80 (212)
Q Consensus         1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~   80 (212)
                      +||+.++|||+||+.+++|||+||||++|+|++++...++..++.++.++++.+||+||+++||+||||+.|+..++..|
T Consensus       464 ~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~  543 (759)
T PLN03012        464 MYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEW  543 (759)
T ss_pred             hCCCCCCCcccccCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHH
Confidence            68999999999999999999999999999998887666655566778889999999999999999999999999999999


Q ss_pred             hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222           81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW  160 (212)
Q Consensus        81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~  160 (212)
                      ++.+||.|.|+++++|++++++|+.||.+|..+....+.++.+++.++|+||++||++.|++||||+|+|+++++|+|++
T Consensus       544 le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~  623 (759)
T PLN03012        544 LELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWF  623 (759)
T ss_pred             HHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHH
Confidence            99999999999999999999999999999999988777777777889999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCccccc
Q 028222          161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNR  210 (212)
Q Consensus       161 al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~~  210 (212)
                      ||.||.++|.+..+.+.|+||++||++.|++||||++++.++.+..|+.+
T Consensus       624 aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~  673 (759)
T PLN03012        624 ALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQ  673 (759)
T ss_pred             HHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCC
Confidence            99999999997655799999999999999999999999999999999874

>PLN02993 lupeol synthase

Probab=100.00  E-value=2e-48  Score=360.87  Aligned_cols=209  Identities=55%  Similarity=1.159  Sum_probs=195.4

Q ss_pred             CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222            1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW   80 (212)
Q Consensus         1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~   80 (212)
                      +||+.++|||+||+.+++|||+||||++|+|++++.+.++..+|.++.++++.+||+||+++||+||||+.|+.+++..|
T Consensus       464 ~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~  543 (763)
T PLN02993        464 MYRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKW  543 (763)
T ss_pred             hCCCCCCCcCcCccCCCCCCcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhH
Confidence            68999999999999999999999999999998888777655556677889999999999999999999999999999999


Q ss_pred             hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222           81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW  160 (212)
Q Consensus        81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~  160 (212)
                      ++.+|+.|.|+++++|++++++|+.||.+|..+....+.++.++++++|+||++||++.|++||||+|+|+.+++|+|++
T Consensus       544 le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~  623 (763)
T PLN02993        544 LELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWF  623 (763)
T ss_pred             HHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccccccccCcHHHH
Confidence            99999999999999999999999999999999977667777788889999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222          161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       161 al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~  209 (212)
                      ||.||.++|..+.+.+.|+||++||+++|++|||||+++.++.+..|+.
T Consensus       624 aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~  672 (763)
T PLN02993        624 ALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIP  672 (763)
T ss_pred             HHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCccccc
Confidence            9999999999864568999999999999999999999999999999985

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=100.00  E-value=2.1e-41  Score=312.93  Aligned_cols=206  Identities=39%  Similarity=0.734  Sum_probs=182.4

Q ss_pred             CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222            1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW   80 (212)
Q Consensus         1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~   80 (212)
                      +||+.++|||+|++.++.+||+||||++|+||..+...+.. ......++++.++++||+++||+||||+.|+..+...|
T Consensus       352 ~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~-~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~  430 (634)
T TIGR03463       352 FFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLN-PEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRV  430 (634)
T ss_pred             cCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCc-ccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHH
Confidence            58999999999999999999999999999999987543210 00124568999999999999999999999998888999


Q ss_pred             hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222           81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW  160 (212)
Q Consensus        81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~  160 (212)
                      ++.+|+.|.|++.++|++++++|+.||.+|..+....+..+.+++.++++||++||++.|++||+|++.|+.++.|+|++
T Consensus       431 l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~  510 (634)
T TIGR03463       431 LELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWGVCFTYGTFH  510 (634)
T ss_pred             HhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcHHHHH
Confidence            99999999999999999999999999999999876555445567888999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCccc
Q 028222          161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM  208 (212)
Q Consensus       161 al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~  208 (212)
                      ++.||.++|... ..+.++||++||+++|++||||+....++.+..|+
T Consensus       511 al~aL~~~G~~~-~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~  557 (634)
T TIGR03463       511 GVMGLRAAGASP-DDMALQRAAAWLRSYQRADGGWGEVYESCLQARYV  557 (634)
T ss_pred             HHHHHHHcCCCc-CcHHHHHHHHHHHHccCCCCCccCccCcccccccc
Confidence            999999999875 57899999999999999999999988887766665

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]

Probab=100.00  E-value=4.4e-42  Score=308.30  Aligned_cols=211  Identities=58%  Similarity=1.127  Sum_probs=204.4

Q ss_pred             CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222            1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW   80 (212)
Q Consensus         1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~   80 (212)
                      ||||.++|||+||+.+++||.+||||.+|.+++.+...|.+.++..++.+++-.+|+.|+.+|+.+||+..+++.+...|
T Consensus       463 ~yR~~~kG~wtfS~~d~gw~vsDctaEal~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~w  542 (760)
T KOG0497|consen  463 MYRHISKGGWTFSDRDQGWPVSDCTAEALKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEW  542 (760)
T ss_pred             heeccccccccccccccceeeccccHHHHHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHH
Confidence            69999999999999999999999999999999998888878889999999999999999999999999999999999999


Q ss_pred             hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222           81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW  160 (212)
Q Consensus        81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~  160 (212)
                      ++.++|.|.|++++++..++++|..+|.+|.++.+..|++++++|...|.+|+.||.+.|.+||+|+|.|++|++|+|.+
T Consensus       543 LE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgvCFtY~t~F  622 (760)
T KOG0497|consen  543 LELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGVCFTYGTWF  622 (760)
T ss_pred             HHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccccC
Q 028222          161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNRI  211 (212)
Q Consensus       161 al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~~~  211 (212)
                      ++.+|.++|....+.+.+++|++||++.|++|||||+++.++++..||++.
T Consensus       623 a~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~  673 (760)
T KOG0497|consen  623 ALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLE  673 (760)
T ss_pred             hcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccccccc
Confidence            999999999998789999999999999999999999999999999999864

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=100.00  E-value=2e-38  Score=293.06  Aligned_cols=191  Identities=24%  Similarity=0.391  Sum_probs=168.6

Q ss_pred             CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222            1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW   80 (212)
Q Consensus         1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~   80 (212)
                      +||+.++|||+|++.++.+||+||||.+|+||..+. .+    ..+.++++++++++||+++||+||||+.|+..++..+
T Consensus       359 ~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~-~~----~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~  433 (635)
T TIGR01507       359 KRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLR-LP----DERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDL  433 (635)
T ss_pred             cCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcC-CC----ccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhH
Confidence            478899999999999999999999999999998873 22    1245678999999999999999999999998888888


Q ss_pred             hhhcCcccccch--hhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHH
Q 028222           81 IELLNPIEFLDE--VIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYST  158 (212)
Q Consensus        81 ~~~l~~~e~~~~--~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T  158 (212)
                      ++.+|    |++  +++|++++++|+.+|++|..++..  .     ..++|+||++||++.|++||+|++.|+.+++|+|
T Consensus       434 l~~~~----f~d~~~~~D~~~~d~Ta~~l~al~~~g~~--~-----~~~~i~rav~~L~~~Q~~dG~W~g~wg~~~~Y~T  502 (635)
T TIGR01507       434 LNHIP----FCDFGAVTDPPTADVTARVLECLGSFGYD--D-----AWPVIERAVEYLKREQEPDGSWFGRWGVNYLYGT  502 (635)
T ss_pred             HhcCC----ccccccccCCCCccHHHHHHHHHHHhCCC--c-----hhHHHHHHHHHHHHccCCCCCCccCCCCccccHH
Confidence            89888    766  678999999999999999987521  1     1578999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCccc
Q 028222          159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM  208 (212)
Q Consensus       159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~  208 (212)
                      +.++.+|..+|... ..+.|+||++||+++|++||||++.+.++.+..|.
T Consensus       503 ~~al~aL~~~g~~~-~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~  551 (635)
T TIGR01507       503 GAVLSALKAVGIDT-REPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYA  551 (635)
T ss_pred             HHHHHHHHHcCCCc-ccHHHHHHHHHHHHhcCCCCCCCCCCccccccccc
Confidence            99999999999875 57899999999999999999999988888776664

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=100.00  E-value=3.3e-37  Score=284.72  Aligned_cols=198  Identities=36%  Similarity=0.721  Sum_probs=173.5

Q ss_pred             CCCCCC-CccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222            2 FRHISK-GGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW   80 (212)
Q Consensus         2 ~~~~~~-Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~   80 (212)
                      ||++.+ |||+|++.++++||+|||+.+++++..+...     +.+..+++++++++||+++||+||||+.|+.+++..+
T Consensus       344 ~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~-----~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~  418 (621)
T TIGR01787       344 YRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQE-----DEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEW  418 (621)
T ss_pred             hCCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcC-----cccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHH
Confidence            555554 9999999999999999999999887666442     1346789999999999999999999999998888899


Q ss_pred             hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222           81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW  160 (212)
Q Consensus        81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~  160 (212)
                      ++.++|.|.|++.++|++++++|+++|++|..++.     +.+++.++|+||++||++.|++||+|++.|+.+++|+|++
T Consensus       419 l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~-----r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~~y~YgT~~  493 (621)
T TIGR01787       419 LELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGH-----RADEIRNVLERALEYLRREQRADGSWFGRWGVNYTYGTGF  493 (621)
T ss_pred             HHHhcchhhhccccccCCCCchHHHHHHHHHHhcC-----ccHhHHHHHHHHHHHHHHhcCCCCCCcccCCCCCchhHHH
Confidence            99999999999988999999999999999988742     2234568999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222          161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       161 al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~  209 (212)
                      ++.+|..+|....+.+.+++|++||+++|++||||++.+.++.+..|..
T Consensus       494 al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~  542 (621)
T TIGR01787       494 VLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVG  542 (621)
T ss_pred             HHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCC
Confidence            9999999987643458999999999999999999999988888777754

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=100.00  E-value=2e-36  Score=280.96  Aligned_cols=204  Identities=48%  Similarity=0.923  Sum_probs=175.4

Q ss_pred             CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222            1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW   80 (212)
Q Consensus         1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~   80 (212)
                      ++|+.++|||+|++.++.+||+||||.+|+||+.+...++.  +.+++.+++.++++||+++||+||||..|+..+...|
T Consensus       353 ~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~--~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~  430 (634)
T cd02892         353 KYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPF--GEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHW  430 (634)
T ss_pred             hCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCc--chhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhh
Confidence            46778999999999999999999999999999998765421  3456789999999999999999999998887776665


Q ss_pred             hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222           81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW  160 (212)
Q Consensus        81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~  160 (212)
                      +..+.|.+.|++.++|++++++|+.+|.+|..++...+.++ .+++++++||++||++.|++||+|++.|+.++.|+|++
T Consensus       431 ~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r-~~i~~~i~rAv~~L~~~Q~~DGsW~g~wg~~~~Y~T~~  509 (634)
T cd02892         431 LENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHR-REIDPAIRRAVKYLLREQEPDGSWYGRWGVCYIYGTWF  509 (634)
T ss_pred             HhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchH-HHHHHHHHHHHHHHHHccCCCCCccccCCCccHHHHHH
Confidence            66666777788788899999999999999999876544333 36788999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcc
Q 028222          161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLH  207 (212)
Q Consensus       161 al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y  207 (212)
                      ++.||..+|......+.++++++||+++|++||||+..+.++.+..|
T Consensus       510 al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~  556 (634)
T cd02892         510 ALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSY  556 (634)
T ss_pred             HHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCccc
Confidence            99999999986225789999999999999999999988776665544

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.96  E-value=3.4e-28  Score=210.70  Aligned_cols=193  Identities=47%  Similarity=0.931  Sum_probs=154.8

Q ss_pred             CCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhh
Q 028222            2 FRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWI   81 (212)
Q Consensus         2 ~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~   81 (212)
                      |.+.++|||+|+.....++++|+|+.++.+|..+.+.++.  +.+..++.+.++++||+++|++||||..+.+.....+.
T Consensus        71 ~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~--~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~  148 (348)
T cd02889          71 YRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPD--GKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYL  148 (348)
T ss_pred             CCCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcc--cchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHH
Confidence            5678999999998777789999999999999998764321  34567899999999999999999999977655444333


Q ss_pred             hhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHH
Q 028222           82 ELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWA  161 (212)
Q Consensus        82 ~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~a  161 (212)
                      +. ++ +.+++...+++++.+|+++|.+|..++...+.. ++++.+.++|+++||++.|++||+|.+.|+.++.|.|+++
T Consensus       149 ~~-~~-~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~-~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~~~~~y~ta~a  225 (348)
T cd02889         149 EL-IP-EVDGDIMIDPPYVECTGSVLEALGLFGKLYPEH-RREIDPAIRRAVKYLEREQEPDGSWYGRWGVCFIYGTWFA  225 (348)
T ss_pred             hc-Cc-hhhcCCccCCCCcchHHHHHHHHHHhhhcCCch-HHHHHHHHHHHHHHHHHhCCCCCCccccCCCcchHHHHHH
Confidence            22 11 113334456678889999999999887543322 2356689999999999999999999888877788999999


Q ss_pred             HHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccC
Q 028222          162 ISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYL  200 (212)
Q Consensus       162 l~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~  200 (212)
                      +.+|..+|... ..+.++++++||+++|++||+|+..+.
T Consensus       226 ~~aL~~~g~~~-~~~~~~~~~~~L~~~Q~~dG~w~~~~~  263 (348)
T cd02889         226 LEALAAAGEDE-NSPYVRKACDWLLSKQNPDGGWGESYE  263 (348)
T ss_pred             HHHHHHcCCCc-CcHHHHHHHHHHHHccCCCCCcCCccc
Confidence            99999998764 578999999999999999999987543

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>PLN03012 Camelliol C synthase

Probab=99.96  E-value=2.2e-28  Score=227.10  Aligned_cols=168  Identities=21%  Similarity=0.313  Sum_probs=134.6

Q ss_pred             CCCCCCccc-ccc------------------CCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc
Q 028222            3 RHISKGGWT-FSD------------------KDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ   63 (212)
Q Consensus         3 ~~~~~Ggw~-~~~------------------~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q   63 (212)
                      -|++.|||. |+.                  .-..++.+|||+++|.+|..+.+.++.++..++ +..|++|++||++.|
T Consensus       525 mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i-~~~i~rAv~~L~~~Q  603 (759)
T PLN03012        525 LQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEI-NAFIKKAAEYIENIQ  603 (759)
T ss_pred             ccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhh-HHHHHHHHHHHHHhc
Confidence            488999995 443                  222467899999999999998876655433334 789999999999999


Q ss_pred             cCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222           64 SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD  143 (212)
Q Consensus        64 ~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d  143 (212)
                      ++||||..-..                    ++  ....|+.||.+|..++..+++      .++|+||++||++.|++|
T Consensus       604 ~~DGsW~G~Wg--------------------v~--y~YgT~~aL~aL~a~g~~~~~------~~~Irrav~fLls~Q~~D  655 (759)
T PLN03012        604 MLDGSWYGNWG--------------------IC--FTYGTWFALAGLAAAGKTFND------CEAIRKGVHFLLAAQKDN  655 (759)
T ss_pred             CCCCCCccccc--------------------cc--CCcHHHHHHHHHHHhCccCCC------cHHHHHHHHHHHHhcCCC
Confidence            99999973211                    11  123699999999998764432      368999999999999999


Q ss_pred             CCcCCCCcc-------------chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222          144 GSWYGTWGV-------------CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY  199 (212)
Q Consensus       144 G~w~g~~~~-------------~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~  199 (212)
                      |||++.|..             +..+.|++|++||.++|...++.+.|+||++||++.|.+||+|.+..
T Consensus       656 GGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~  724 (759)
T PLN03012        656 GGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQE  724 (759)
T ss_pred             CCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCce
Confidence            999887743             44589999999999999876556799999999999999999998754

>PLN02993 lupeol synthase

Probab=99.94  E-value=1.3e-26  Score=215.64  Aligned_cols=168  Identities=19%  Similarity=0.285  Sum_probs=131.7

Q ss_pred             CCCCCCccc-cccCC------------------CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc
Q 028222            3 RHISKGGWT-FSDKD------------------HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ   63 (212)
Q Consensus         3 ~~~~~Ggw~-~~~~~------------------~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q   63 (212)
                      -|++.|||. |+...                  ..+|.+|||++||.+|..+.+..+.++..++ +++++++++||++.|
T Consensus       525 mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei-~~~i~rAv~yL~~~Q  603 (763)
T PLN02993        525 LQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEI-IKSIEKAVQFIESKQ  603 (763)
T ss_pred             hccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhH-HHHHHHHHHHHHHhc
Confidence            388999999 76421                  1147899999999999998765444333333 689999999999999


Q ss_pred             cCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222           64 SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD  143 (212)
Q Consensus        64 ~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d  143 (212)
                      ++||||..-.+                      ...+..|+.||.+|..++..++.      .++|+||++||++.|++|
T Consensus       604 ~~DGSW~G~Wg----------------------v~y~YgT~~aL~aL~a~G~~~~~------~~~IrrAv~fLls~Q~~D  655 (763)
T PLN02993        604 TPDGSWYGNWG----------------------ICFIYATWFALGGLAAAGKTYND------CLAMRKGVHFLLTIQRDD  655 (763)
T ss_pred             CCCCCcccccc----------------------cccCcHHHHHHHHHHHcCCCCCC------cHHHHHHHHHHHHhcCCC
Confidence            99999963211                      11233699999999888654321      368999999999999999


Q ss_pred             CCcCCCCcc-------------chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222          144 GSWYGTWGV-------------CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY  199 (212)
Q Consensus       144 G~w~g~~~~-------------~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~  199 (212)
                      |+|++.+..             +..++|++|++||.++|...++.+.++||++||++.|++||+|.+..
T Consensus       656 GGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~  724 (763)
T PLN02993        656 GGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQE  724 (763)
T ss_pred             CCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcc
Confidence            999876532             44589999999999999865556899999999999999999998753

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=99.93  E-value=8.3e-26  Score=209.37  Aligned_cols=165  Identities=16%  Similarity=0.246  Sum_probs=128.8

Q ss_pred             CCCCCCccc-cccC------------------CCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc
Q 028222            3 RHISKGGWT-FSDK------------------DHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ   63 (212)
Q Consensus         3 ~~~~~Ggw~-~~~~------------------~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q   63 (212)
                      .|+++|||+ |...                  ....+.+|+|+++|.+|..+....+.... ...+++++++++||++.|
T Consensus       412 ~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~-~~i~~ai~rav~~L~~~Q  490 (634)
T TIGR03463       412 RQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPD-GRITRAISRGVRFLRSRQ  490 (634)
T ss_pred             hcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhh-hHHHHHHHHHHHHHHHhc
Confidence            488999999 6532                  22467899999999999998654332111 223678999999999999


Q ss_pred             cCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222           64 SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD  143 (212)
Q Consensus        64 ~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d  143 (212)
                      ++||||....+.                      .....|+.+|.+|..++....       .+.++||++||++.|++|
T Consensus       491 ~~dGsW~g~Wg~----------------------~~~Y~T~~al~aL~~~G~~~~-------~~~i~rA~~~Ll~~Q~~D  541 (634)
T TIGR03463       491 REDGSFPGSWGV----------------------CFTYGTFHGVMGLRAAGASPD-------DMALQRAAAWLRSYQRAD  541 (634)
T ss_pred             CCCCCccccCCC----------------------CCcHHHHHHHHHHHHcCCCcC-------cHHHHHHHHHHHHccCCC
Confidence            999999743221                      112259999999988753211       368999999999999999


Q ss_pred             CCcCCCCcc-----------chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222          144 GSWYGTWGV-----------CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY  199 (212)
Q Consensus       144 G~w~g~~~~-----------~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~  199 (212)
                      |||++.|+.           +..+.|++|++||..+|..  ..+.++|+++||+++|++||+|....
T Consensus       542 GgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~--~~~~i~rgi~~L~~~Q~~dG~W~~~~  606 (634)
T TIGR03463       542 GGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEG--GHDAVQRGVAWLRSRQQEDGRWPREP  606 (634)
T ss_pred             CCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCc--CCHHHHHHHHHHHHhCCCCCCCCCCc
Confidence            999776542           4568999999999999865  47899999999999999999999765

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=99.93  E-value=1.2e-25  Score=208.30  Aligned_cols=167  Identities=23%  Similarity=0.418  Sum_probs=128.3

Q ss_pred             CCCCCCccc-cccCCC----------------CCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccC
Q 028222            3 RHISKGGWT-FSDKDH----------------GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSK   65 (212)
Q Consensus         3 ~~~~~Ggw~-~~~~~~----------------~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~   65 (212)
                      +|++.|||+ |+..+.                ..|++|+|+++|++|...+.        ...+.+++++++||+++|++
T Consensus       415 ~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~--------~~~~~~i~rav~~L~~~Q~~  486 (635)
T TIGR01507       415 MQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGY--------DDAWPVIERAVEYLKREQEP  486 (635)
T ss_pred             hcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCC--------CchhHHHHHHHHHHHHccCC
Confidence            589999996 653221                24789999999999998743        12378999999999999999


Q ss_pred             CCce-eecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCC
Q 028222           66 TGGI-TGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDG  144 (212)
Q Consensus        66 dGgw-~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG  144 (212)
                      |||| +.+..                       .+...|+.||.+|...+...       ..++|+||++||++.|++||
T Consensus       487 dG~W~g~wg~-----------------------~~~Y~T~~al~aL~~~g~~~-------~~~~i~rAv~wL~~~Q~~DG  536 (635)
T TIGR01507       487 DGSWFGRWGV-----------------------NYLYGTGAVLSALKAVGIDT-------REPYIQKALAWLESHQNPDG  536 (635)
T ss_pred             CCCCccCCCC-----------------------ccccHHHHHHHHHHHcCCCc-------ccHHHHHHHHHHHHhcCCCC
Confidence            9999 32211                       12336999999998764321       14789999999999999999


Q ss_pred             CcCCC-----------CccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCC---CCcccc
Q 028222          145 SWYGT-----------WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCP---NKLHMN  209 (212)
Q Consensus       145 ~w~g~-----------~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~---~~~y~~  209 (212)
                      ||+..           .+.++.+.|++|+.||..++..  ..+.|+||++||+++|++||+|++...+..   ..+|+.
T Consensus       537 GWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~--~~~~I~rav~~L~~~Q~~dG~W~e~~~~g~gfp~~~yi~  613 (635)
T TIGR01507       537 GWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRA--ESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLG  613 (635)
T ss_pred             CCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHHhcCCCCCCCCcccccCcccceeeec
Confidence            99632           1345677899999999999875  468999999999999999999998754433   445543

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=99.92  E-value=5.8e-25  Score=195.84  Aligned_cols=190  Identities=29%  Similarity=0.584  Sum_probs=167.8

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      |+.++|||+|+..++.+||+|+|+.++++|....+           ....+++++|+..+||..|||..++..+...|+.
T Consensus       245 ~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~~-----------~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~  313 (517)
T COG1657         245 RKFSPGGWGFSNINTGYPDADDTAGVVRALIGVQS-----------LPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLR  313 (517)
T ss_pred             cccCCCccceeecccCCCCchhhhHHHHHHHhhcc-----------hhhHHhhhhHhhhcccccCceeeeccccccHHHh
Confidence            78899999999999999999999999999998754           2446679999999999999999999888899999


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHH
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAI  162 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al  162 (212)
                      .+++.+.+  .+++++.+++|+.++.+|+.+..-.+..+    ...++++++||++.|.++|+|++.|++|++|+|+.++
T Consensus       314 ~L~~~~~~--~~~~~s~adct~~~~~~l~a~~~yl~~~~----~~~i~~a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~  387 (517)
T COG1657         314 LLPPAEVK--AMVDPSTADCTHRVVLALAALNAYLEAYD----GQPIERALEWLLSDQEPDGSWYGRWGVCYIYGTSGAL  387 (517)
T ss_pred             hCCHhhcc--ccccCCcccCCCccHHHHhhhhhcccccc----CCcccHHHhhhhhhccccCceeeEEEEEEEEehhhhh
Confidence            99987654  67899999999999999988764322211    3469999999999999999999999999999999999


Q ss_pred             HHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222          163 SGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~  209 (212)
                      .+|...|....+...+++++.||.++|.+||||+....+++...|+-
T Consensus       388 ~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~  434 (517)
T COG1657         388 SALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTG  434 (517)
T ss_pred             hhhhccCccccchHHHHHHHHHhhhccccCCCccccccccccccccc
Confidence            99999998765678999999999999999999999999998888763

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=99.90  E-value=3.6e-23  Score=191.58  Aligned_cols=164  Identities=20%  Similarity=0.274  Sum_probs=125.4

Q ss_pred             CCCCCCccc-cccCC------------------CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc
Q 028222            3 RHISKGGWT-FSDKD------------------HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ   63 (212)
Q Consensus         3 ~~~~~Ggw~-~~~~~------------------~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q   63 (212)
                      .|++.|||+ |+...                  ...|.+|+|+++|++|..+...      .+..++.++++++||+++|
T Consensus       400 ~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r------~~~~~~~i~rAl~~L~~~Q  473 (621)
T TIGR01787       400 MQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHR------ADEIRNVLERALEYLRREQ  473 (621)
T ss_pred             HcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCc------cHhHHHHHHHHHHHHHHhc
Confidence            389999998 65321                  1346789999999999887421      1124588999999999999


Q ss_pred             cCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222           64 SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD  143 (212)
Q Consensus        64 ~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d  143 (212)
                      ++||+|..-.+.                      .+...|+.++.+|..++.....      .+.++||++||++.|++|
T Consensus       474 ~~DGsw~g~wg~----------------------~y~YgT~~al~aL~~~G~~~~~------~~~i~rA~~~L~~~Q~~D  525 (621)
T TIGR01787       474 RADGSWFGRWGV----------------------NYTYGTGFVLSALAAAGRTYRN------CPEVQKACDWLLSRQMPD  525 (621)
T ss_pred             CCCCCCcccCCC----------------------CCchhHHHHHHHHHHhCCcccC------CHHHHHHHHHHHhhcCCC
Confidence            999999632110                      1223488999999988643211      268999999999999999


Q ss_pred             CCcCCCCc-----------cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcC
Q 028222          144 GSWYGTWG-----------VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSC  202 (212)
Q Consensus       144 G~w~g~~~-----------~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~  202 (212)
                      |+|+..+.           .+....|++||+||.+++...  .+.++|+++||+++|++||+|...+.+.
T Consensus       526 GGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~~--~~ai~rgv~~L~~~Q~~dG~w~~~~~~g  593 (621)
T TIGR01787       526 GGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAGEAD--SEAIERGVKYLLETQRPDGDWPQEYITG  593 (621)
T ss_pred             CCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHhCCCCCCCCCccccC
Confidence            99965431           345678999999999998753  5689999999999999999999866544

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.86  E-value=6.3e-21  Score=177.53  Aligned_cols=165  Identities=24%  Similarity=0.377  Sum_probs=124.1

Q ss_pred             CCCCCCccc-cccCCC------------------CCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc
Q 028222            3 RHISKGGWT-FSDKDH------------------GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ   63 (212)
Q Consensus         3 ~~~~~Ggw~-~~~~~~------------------~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q   63 (212)
                      .|++.|||. |+....                  ..+.+|+|+++|.+|..+....+...  ...++.++++++||++.|
T Consensus       412 ~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r--~~i~~~i~rAv~~L~~~Q  489 (634)
T cd02892         412 MQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHR--REIDPAIRRAVKYLLREQ  489 (634)
T ss_pred             ccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchH--HHHHHHHHHHHHHHHHcc
Confidence            488999998 653221                  14788999999999999865322111  023478999999999999


Q ss_pred             cCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222           64 SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD  143 (212)
Q Consensus        64 ~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d  143 (212)
                      ++||||..-...                      ..+..|+.++.+|..++....      ..+.++|+++||++.|++|
T Consensus       490 ~~DGsW~g~wg~----------------------~~~Y~T~~al~AL~~~G~~~~------~~~~i~~a~~~L~s~Q~~D  541 (634)
T cd02892         490 EPDGSWYGRWGV----------------------CYIYGTWFALEALAAAGEDYE------NSPYIRKACDFLLSKQNPD  541 (634)
T ss_pred             CCCCCccccCCC----------------------ccHHHHHHHHHHHHHhCCccc------CcHHHHHHHHHHHhcCCCC
Confidence            999999531110                      122358889999988754211      1368999999999999999


Q ss_pred             CCcCCCC-----------ccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222          144 GSWYGTW-----------GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY  199 (212)
Q Consensus       144 G~w~g~~-----------~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~  199 (212)
                      |+|....           +.+....|++|+++|..+|..  +.+.++++++||+++|++||+|....
T Consensus       542 GgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~--~~~~i~r~i~wL~~~Q~~~G~w~~~~  606 (634)
T cd02892         542 GGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEP--DSEAVERGIKYLLNTQLPDGDWPQEE  606 (634)
T ss_pred             CCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHcCCCCCCCCCcc
Confidence            9996421           234567899999999999875  47899999999999999999998754

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=99.85  E-value=1.9e-21  Score=142.37  Aligned_cols=109  Identities=31%  Similarity=0.413  Sum_probs=83.2

Q ss_pred             HHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH--HH
Q 028222           56 ANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN--GV  133 (212)
Q Consensus        56 v~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r--a~  133 (212)
                      |+||+++||+||||+.+ .                     .++++..|+.+|.+|..++...+          .++  ++
T Consensus         1 v~~L~~~Q~~dGgw~~~-~---------------------~~~~~~~T~~al~aL~~~g~~~~----------~~~~~~~   48 (113)
T PF13249_consen    1 VDWLLSRQNPDGGWGGF-G---------------------GPSDVWDTAFALLALAALGEEPD----------RDRAAAV   48 (113)
T ss_dssp             HHHHHHHB-TTSSBBSS-T---------------------S-BEHHHHHHHHHHHHHHTSHHC----------HHHHHHH
T ss_pred             CHhhHHHcCCCCCCcCC-C---------------------CCCCHHHHHHHHHHHHHhCCccc----------HHHHHHH
Confidence            68999999999999953 1                     13456679999999998865321          333  59


Q ss_pred             HHHHhccccCCCcCCCC--ccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccc
Q 028222          134 KFTEDSQKLDGSWYGTW--GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGE  197 (212)
Q Consensus       134 ~~L~~~Q~~dG~w~g~~--~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~  197 (212)
                      +||++.|++||+|....  .....+.|.+++.+|..++... ..+.++++++||+++|++||||++
T Consensus        49 ~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~~-~~~~~~~a~~~l~~~Q~~dGg~~y  113 (113)
T PF13249_consen   49 EWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGRPD-DEEAVRKAVDWLLSCQNPDGGWGY  113 (113)
T ss_dssp             HHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-GG-CHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred             HHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHhcCCCCCCCc
Confidence            99999999999997654  2345788999999999988875 368999999999999999999984

...

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.84  E-value=2.6e-20  Score=161.41  Aligned_cols=163  Identities=21%  Similarity=0.196  Sum_probs=122.6

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc--------------cCCCc
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ--------------SKTGG   68 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q--------------~~dGg   68 (212)
                      +|+++|||++..     +++.+|+.++.+|......       +...+.++|+++||+++|              .++||
T Consensus        11 ~Q~~dG~W~~~~-----~~~~~Ta~~~~al~~~g~~-------~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Gg   78 (348)
T cd02889          11 LQAPDGHWPGEY-----SQVWDTALALQALLEAGLA-------PEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGG   78 (348)
T ss_pred             hccCCCCccccC-----CchHHHHHHHHHHHHcCCC-------CccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCc
Confidence            689999999753     7788999999999876431       246789999999999999              78999


Q ss_pred             eeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCC
Q 028222           69 ITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYG  148 (212)
Q Consensus        69 w~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g  148 (212)
                      |+ |.....                  ..++++.|+.++.+|..+....+. ......+.+.++++||++.|++||+|..
T Consensus        79 w~-y~~~~~------------------~~~~~~~Ta~~l~al~~~~~~~~~-~~~~~~~~i~~a~~~L~~~Q~~dG~f~~  138 (348)
T cd02889          79 WA-FSTANQ------------------GYPDSDDTAEALKALLRLQKKPPD-GKKVSRERLYDAVDWLLSMQNSNGGFAA  138 (348)
T ss_pred             Cc-ccCcCC------------------CCCCCCChHHHHHHHHHhhccCcc-cchhhHHHHHHHHHHHHHhccCCCCEee
Confidence            98 322100                  123456799999999987654221 1233457899999999999999999953


Q ss_pred             CCc--------------------cchhhHHHHHHHHHHHcCcCCCC-----hHHHHHHHHHHHhcccCCCcccc
Q 028222          149 TWG--------------------VCFIYSTWWAISGLVAAEKTYSN-----CLAIRKATDFLLNIQCDDGGWGE  197 (212)
Q Consensus       149 ~~~--------------------~~~~~~T~~al~aL~~~g~~~~~-----~~~i~~a~~~Ll~~Q~~dGgw~~  197 (212)
                      ...                    ......|++++.+|..++.....     .+.++++++||++.|++||+|..
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~  212 (348)
T cd02889         139 FEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYG  212 (348)
T ss_pred             ecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence            110                    11245699999999998875422     16899999999999999999964

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=99.84  E-value=1.1e-19  Score=151.52  Aligned_cols=166  Identities=26%  Similarity=0.352  Sum_probs=132.5

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      +|++.|||++..... .+++.+|+.++++|..+.+..      +...+.++++++||+++|++||||.........    
T Consensus        64 ~q~~dG~~~~~~~~~-~~~~~~T~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~----  132 (300)
T cd00688          64 YQLSDGGFSGWGGND-YPSLWLTAYALKALLLAGDYI------AVDRIDLARALNWLLSLQNEDGGFREDGPGNHR----  132 (300)
T ss_pred             ccCCCCCccCCCCCC-CcchHhHHHHHHHHHHcCCcc------ccCHHHHHHHHHHHHHccCCCCCeeeecCCCCc----
Confidence            478999999865322 789999999999999976521      356788999999999999999999854332100    


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHH
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAI  162 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al  162 (212)
                                ...+.+++..|+.++.+|..++....       ...++++++||.+.|++||+| ..+.....+.|++++
T Consensus       133 ----------~~~~~~~~~~t~~al~aL~~~~~~~~-------~~~~~~~~~~l~~~q~~~g~~-~~~~~~~~~~t~~~~  194 (300)
T cd00688         133 ----------IGGDESDVRLTAYALIALALLGKLDP-------DPLIEKALDYLLSCQNYDGGF-GPGGESHGYGTACAA  194 (300)
T ss_pred             ----------ccCCCCcccHHHHHHHHHHHcCCCCC-------cHHHHHHHHHHHHHhcCCCCc-CCCccccHHHHHHHH
Confidence                      01123466689999999998764311       357999999999999999999 777777889999999


Q ss_pred             HHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222          163 SGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY  199 (212)
Q Consensus       163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~  199 (212)
                      .+|..++..  ..+.++++++||+++|..+|||+...
T Consensus       195 ~aL~~~~~~--~~~~~~~~~~~L~~~q~~~g~~~~~~  229 (300)
T cd00688         195 AALALLGDL--DSPDAKKALRWLLSRQRPDGGWGEGR  229 (300)
T ss_pred             HHHHHcCCc--chHHHHHHHHHHHHhcCCCCCcCccc
Confidence            999999875  36789999999999999999998764

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.75  E-value=6.4e-17  Score=137.55  Aligned_cols=176  Identities=11%  Similarity=-0.009  Sum_probs=109.6

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      .|+++|||++-......+++=.||.|+++|..+.+      +.++.+..|+++++||+++|++||||..+.......+. 
T Consensus        61 ~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~------~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~-  133 (292)
T cd02897          61 YKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARP------FIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQ-  133 (292)
T ss_pred             ccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhc------cCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhc-
Confidence            47899999953222124556689999999999753      23467899999999999999999999854321100000 


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCC--------------------ccc------------hhHHHHHHH
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYP--------------------KHK------------KNEVNNFIT  130 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~--------------------~~~------------~~~i~~~i~  130 (212)
                              +   .+++.+..|+.|+.+|...+....                    .+.            .+. ...+-
T Consensus       134 --------~---~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~~~~~y~~al~a~AL~~~~~~~-~~~~~  201 (292)
T cd02897         134 --------G---GVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDSISDPYTLALAAYALTLAGSEK-RPEAL  201 (292)
T ss_pred             --------C---CCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCCcc-HHHHH
Confidence                    0   012334456666666655432100                    000            000 11222


Q ss_pred             HHHHHHHhccccCCCcCCC-----------Cc-cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccc
Q 028222          131 NGVKFTEDSQKLDGSWYGT-----------WG-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       131 ra~~~L~~~Q~~dG~w~g~-----------~~-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~  198 (212)
                      +.+.++...++.+|.|...           ++ ...+..|+++|++|..++. + ..+.+.++++||.++|+.+|||+..
T Consensus       202 ~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~-~-~~~~~~~~v~WL~~~q~~~Ggf~sT  279 (292)
T cd02897         202 KKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGG-E-DLAEALPIVKWLAKQRNSLGGFSST  279 (292)
T ss_pred             HHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCC-c-cHhHHHHHHHHHHHcCCCCCCcccH
Confidence            2334444445556777420           11 2245679999999999874 2 4578999999999999999999964


Q ss_pred             c
Q 028222          199 Y  199 (212)
Q Consensus       199 ~  199 (212)
                      -
T Consensus       280 Q  280 (292)
T cd02897         280 Q  280 (292)
T ss_pred             H
Confidence            3

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=99.74  E-value=5.4e-17  Score=137.52  Aligned_cols=165  Identities=14%  Similarity=0.084  Sum_probs=126.7

Q ss_pred             CCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhc
Q 028222            5 ISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELL   84 (212)
Q Consensus         5 ~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l   84 (212)
                      .+.|||++.  +...++...|..++.+|..++..       -......+++++||.++|++||||..-..          
T Consensus        62 ~~~Ggf~~~--~~~~~~~~~T~~al~~l~llg~~-------~~~~~~~~~~~~~l~~~q~~dGgf~~~~~----------  122 (286)
T cd02890          62 NEDGGFGGG--PGQDPHLASTYAAVLSLAILGDD-------ALSRIDREKIYKFLSSLQNPDGSFRGDLG----------  122 (286)
T ss_pred             CCCCCCCCC--CCCCccHHHHHHHHHHHHHcCcc-------ccchhhHHHHHHHHHHhcCCCCCcccCCC----------
Confidence            789999986  34577888999999999998541       01223467899999999999999974211          


Q ss_pred             CcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCC-ccchhhHHHHHHH
Q 028222           85 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAIS  163 (212)
Q Consensus        85 ~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~-~~~~~~~T~~al~  163 (212)
                                 ..+++..|..+|.+|..++...        ...+++.++||++.|++||+|...- +.++.-.|++|+.
T Consensus       123 -----------~~~d~~~ty~al~~l~ll~~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~  183 (286)
T cd02890         123 -----------GEVDTRFVYCALSILSLLNILT--------DIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVA  183 (286)
T ss_pred             -----------CCchHHHHHHHHHHHHHhCCch--------hhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHH
Confidence                       1123445788888888876421        2468999999999999999996543 2345566899999


Q ss_pred             HHHHcCcCCCChHHHHHHHHHHHhcccCCC-ccccccCcCCCCcccc
Q 028222          164 GLVAAEKTYSNCLAIRKATDFLLNIQCDDG-GWGESYLSCPNKLHMN  209 (212)
Q Consensus       164 aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dG-gw~~~~~s~~~~~y~~  209 (212)
                      +|..+|...  .+.+++.++||+++|+.+| ||...+..-++..|++
T Consensus       184 sL~~l~~~~--~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~  228 (286)
T cd02890         184 SLALLGRLD--LIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSF  228 (286)
T ss_pred             HHHHcCCCc--ccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhh
Confidence            999998863  6689999999999999988 8988887777777765

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=99.72  E-value=1.3e-16  Score=132.99  Aligned_cols=163  Identities=19%  Similarity=0.198  Sum_probs=123.2

Q ss_pred             CCCCCCccccccCC-----CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCC
Q 028222            3 RHISKGGWTFSDKD-----HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGA   77 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~-----~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~   77 (212)
                      +|+++|||.+....     ...++.+.|+.+|.+|..+....        ..+.++++++||.++|++||||. ..    
T Consensus       116 ~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~--------~~~~~~~~~~~l~~~q~~~g~~~-~~----  182 (300)
T cd00688         116 LQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLD--------PDPLIEKALDYLLSCQNYDGGFG-PG----  182 (300)
T ss_pred             ccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCC--------CcHHHHHHHHHHHHHhcCCCCcC-CC----
Confidence            47889999976543     23678999999999998875421        15789999999999999999992 11    


Q ss_pred             hhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCC----ccc
Q 028222           78 PSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW----GVC  153 (212)
Q Consensus        78 ~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~----~~~  153 (212)
                                        ..+++..|+.++.+|..++..        ....++++++||++.|.++|+|...+    ...
T Consensus       183 ------------------~~~~~~~t~~~~~aL~~~~~~--------~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~  236 (300)
T cd00688         183 ------------------GESHGYGTACAAAALALLGDL--------DSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLS  236 (300)
T ss_pred             ------------------ccccHHHHHHHHHHHHHcCCc--------chHHHHHHHHHHHHhcCCCCCcCccccCCCCcC
Confidence                              112344688999999887532        13578999999999999999996543    123


Q ss_pred             hhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCC
Q 028222          154 FIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNK  205 (212)
Q Consensus       154 ~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~  205 (212)
                      ....|.+++.+|...+.. ...+.++++++||++.|+++|+|...+.....+
T Consensus       237 ~~~~~~~~~~aL~~~~~~-~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~  287 (300)
T cd00688         237 DSCYTEWAAYALLALGKL-GDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDT  287 (300)
T ss_pred             chHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHhccCCCCCcCcCCCCCCcc
Confidence            455677888888888764 235689999999999999999999866644433

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=99.72  E-value=8.4e-17  Score=136.38  Aligned_cols=149  Identities=19%  Similarity=0.125  Sum_probs=115.0

Q ss_pred             cHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc-cCCCceeecCCCCChhhhhhcCcccccchhhcccCccch
Q 028222           24 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ-SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVEC  102 (212)
Q Consensus        24 ~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q-~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~  102 (212)
                      .|=-+|.+|..+..        +.....++++++||+++| ++||||+....                     +++++..
T Consensus        29 ~~y~~l~~l~ll~~--------~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~---------------------~~~~~~~   79 (286)
T cd02890          29 LLYWILSSLDLLGE--------DLDDENKDEIIDFIYSCQVNEDGGFGGGPG---------------------QDPHLAS   79 (286)
T ss_pred             HHHHHHHHHHHhCC--------CcchHHHHHHHHHHHHhhcCCCCCCCCCCC---------------------CCccHHH
Confidence            34456666666533        356788999999999999 99999984311                     2346667


Q ss_pred             HHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCC-CccchhhHHHHHHHHHHHcCcCCCChHHHHHH
Q 028222          103 TASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKA  181 (212)
Q Consensus       103 Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~-~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a  181 (212)
                      |+.++.+|..++..  ...    ...++++++||++.|++||+|.+. ++..+.+.|.+++.+|..+|...  .+.+++.
T Consensus        80 T~~al~~l~llg~~--~~~----~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~--~~~~~~~  151 (286)
T cd02890          80 TYAAVLSLAILGDD--ALS----RIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILT--DIDKEKL  151 (286)
T ss_pred             HHHHHHHHHHcCcc--ccc----hhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCch--hhhHHHH
Confidence            99999999988641  011    123678999999999999999654 45567788999999999998763  5789999


Q ss_pred             HHHHHhcccCCCccccccCcCCCCcccc
Q 028222          182 TDFLLNIQCDDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       182 ~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~  209 (212)
                      ++||+++|++||||+..+..-+...||+
T Consensus       152 ~~~l~~~Q~~dGGf~~~~~~es~~~~t~  179 (286)
T cd02890         152 IDYILSCQNYDGGFGGVPGAESHGGYTF  179 (286)
T ss_pred             HHHHHHhCCCCCCcCCCCCCCCCccHhH
Confidence            9999999999999998877666666664

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=99.71  E-value=2.2e-16  Score=132.49  Aligned_cols=159  Identities=9%  Similarity=0.086  Sum_probs=114.2

Q ss_pred             CCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCc
Q 028222           20 PVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDY   99 (212)
Q Consensus        20 ~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~   99 (212)
                      .|.+.|...|.-|+.+-+.    .+.+.+.+++.++++||+++|++||||+.|.+.+. .++..+|    |++       
T Consensus        41 iDN~aT~~e~~fLa~~y~~----t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~-~Y~~~IT----fND-------  104 (290)
T TIGR02474        41 IDNGATVTEIRYLAQVYQQ----EKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKG-GYSDAIT----YND-------  104 (290)
T ss_pred             ccCccHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcC-Ccccccc----cCc-------
Confidence            4677888899888886543    24578899999999999999999999999987554 4455565    543       


Q ss_pred             cchHHHHHHHHHHHHhhCC------ccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchh------------------
Q 028222          100 VECTASALKAMTLFQKLYP------KHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFI------------------  155 (212)
Q Consensus       100 ~~~Ta~al~aL~~~~~~~~------~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~------------------  155 (212)
                       +....||..|..+....+      ....+++..++.||++||++.|.++|+|.+.|+.++.                  
T Consensus       105 -~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls  183 (290)
T TIGR02474       105 -NAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLS  183 (290)
T ss_pred             -HHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccc
Confidence             234567888866543211      1123678899999999999999999999999975431                  


Q ss_pred             -hHHHHHHHHHHHcCcC-CCChHHHHHHHHHHHhcccCCCcc
Q 028222          156 -YSTWWAISGLVAAEKT-YSNCLAIRKATDFLLNIQCDDGGW  195 (212)
Q Consensus       156 -~~T~~al~aL~~~g~~-~~~~~~i~~a~~~Ll~~Q~~dGgw  195 (212)
                       ..|+-++.-|...-.+ ++.-.+|+.|++||.+...++=-|
T Consensus       184 ~~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~g~~~  225 (290)
T TIGR02474       184 SSESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIRGYAY  225 (290)
T ss_pred             cccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCCCcee
Confidence             2345556666655422 224568999999999987665433

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=99.71  E-value=2.8e-16  Score=135.04  Aligned_cols=142  Identities=19%  Similarity=0.294  Sum_probs=106.6

Q ss_pred             HHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHH
Q 028222           28 SFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASAL  107 (212)
Q Consensus        28 ~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al  107 (212)
                      +|.+|..+...         .....+++++||+++|++||||+.++..                     .++...|..++
T Consensus        43 ~l~~L~lL~~~---------~~~~~~~~i~~l~~cq~~~GGF~~~~~~---------------------~~h~~~Ty~al   92 (316)
T PLN03201         43 GLTALDLLGKL---------DDVDRDEVVSWVMRCQHESGGFGGNTGH---------------------DPHILYTLSAV   92 (316)
T ss_pred             HHHHHHHhCCC---------ccccHHHHHHHHHHhcCCCCCcCCCCCC---------------------cccHHHHHHHH
Confidence            66666666431         1233589999999999999999864321                     13455699999


Q ss_pred             HHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCC-CCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHH
Q 028222          108 KAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYG-TWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLL  186 (212)
Q Consensus       108 ~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g-~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll  186 (212)
                      .+|..++..      ..+  ..++.++||++.|++||||.+ .++..++..|.+|+.+|..++..  ....++++++||+
T Consensus        93 ~~L~ll~~~------~~i--d~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~--~~i~~~~~~~~i~  162 (316)
T PLN03201         93 QILALFDRL------DLL--DADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRL--DKINVEKAVDYIV  162 (316)
T ss_pred             HHHHHhhhh------hhh--hHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCcc--chhHHHHHHHHHH
Confidence            999887432      112  356799999999999999976 56666777788888888887754  2457899999999


Q ss_pred             hcccCCCccccccCcCCCCcccc
Q 028222          187 NIQCDDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       187 ~~Q~~dGgw~~~~~s~~~~~y~~  209 (212)
                      +||+.||||+..+..-+...||+
T Consensus       163 scq~~dGGF~~~p~~esh~g~T~  185 (316)
T PLN03201        163 SCKNFDGGFGCTPGGESHAGQIF  185 (316)
T ss_pred             HhcCCCCCcCCCCCCCCccceeh
Confidence            99999999999887766666654

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=99.70  E-value=3e-16  Score=133.26  Aligned_cols=166  Identities=14%  Similarity=0.060  Sum_probs=121.4

Q ss_pred             CCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhc
Q 028222            5 ISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELL   84 (212)
Q Consensus         5 ~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l   84 (212)
                      .+.|||+-..  ...|..-.|-.++.+|..+...       +..++..+++++||+++|++||||+....          
T Consensus        64 ~~~GgF~~~~--~~~~~~~~t~~a~~~L~ll~~~-------~~i~~~~~~~~~~i~~~q~~dGgf~~~~~----------  124 (287)
T cd02894          64 NEDGGFGGSP--GHDPHILSTLSAIQILALYDLL-------NKIDENKEKIAKFIKGLQNEDGSFSGDKW----------  124 (287)
T ss_pred             CCCCCCCCCC--CCcchHHHHHHHHHHHHHhhhh-------hhccHHHHHHHHHHHHHcCCCCCeecCCC----------
Confidence            5689988643  2235555566777777665321       12344689999999999999999984211          


Q ss_pred             CcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCC-ccchhhHHHHHHH
Q 028222           85 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAIS  163 (212)
Q Consensus        85 ~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~-~~~~~~~T~~al~  163 (212)
                                 ..+++..|..++.+|..++...        ...++++++||++.|++||||.++- +..+.-.|.+|+.
T Consensus       125 -----------~e~d~~~ty~a~~~l~ll~~~~--------~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cava  185 (287)
T cd02894         125 -----------GEVDTRFSYCAVLCLTLLGKLD--------LIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVG  185 (287)
T ss_pred             -----------CCchHHHHHHHHHHHHHhCCcc--------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHH
Confidence                       1133445888888887774321        1246999999999999999997643 3355667899999


Q ss_pred             HHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCccccc
Q 028222          164 GLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNR  210 (212)
Q Consensus       164 aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~~  210 (212)
                      +|..+|...  ...+++.++||+++|+.+|||...+..-++..|++.
T Consensus       186 sL~llg~~~--~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~  230 (287)
T cd02894         186 ALAILGSLD--LIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWW  230 (287)
T ss_pred             HHHHcCccc--ccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhH
Confidence            999998763  446899999999999999999988888888888753

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=99.68  E-value=2e-17  Score=120.55  Aligned_cols=108  Identities=23%  Similarity=0.259  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222           52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN  131 (212)
Q Consensus        52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r  131 (212)
                      |+++++||++.|++||||. +...                      +++..|+.++.+|..++..       .+.++|+|
T Consensus         1 i~~~~~~l~~~Q~~dG~W~-~~~~----------------------~~~~~t~~~~~al~~~~~~-------~~~~ai~k   50 (109)
T PF13243_consen    1 IKRAAEWLLSQQNPDGSWG-YNWG----------------------SDVFVTAALILALAAAGDA-------AVDEAIKK   50 (109)
T ss_dssp             ---------------------------------------------------------------TS--------SSBSSHH
T ss_pred             Ccccccccccccccccccc-cccc----------------------ccccccccccccccccCCC-------CcHHHHHH
Confidence            5789999999999999997 2110                      1234688888888877531       23578999


Q ss_pred             HHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccC
Q 028222          132 GVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD  191 (212)
Q Consensus       132 a~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~  191 (212)
                      +++||+++|++||+|... +..+.+.|+.++.+|...+..+ ..+.++|+++||+++|.+
T Consensus        51 a~~~l~~~Q~~dG~w~~~-~~~~~~~t~~~~~~l~~~~~~~-~~~~~~r~~~wi~~~~~~  108 (109)
T PF13243_consen   51 AIDWLLSHQNPDGGWGYS-GGEYVSMTAAAIAALALAGVYP-DDEAVERGLEWILSHQLD  108 (109)
T ss_dssp             HHHHHHH---TTS--S-T-S--HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH---
T ss_pred             HHHHHHHhcCCCCCCCCc-CCCCHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCC
Confidence            999999999999999644 4344566777777776666654 688999999999999753

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=99.68  E-value=5.2e-17  Score=118.70  Aligned_cols=103  Identities=22%  Similarity=0.256  Sum_probs=75.3

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHH--HHHHHhcccCCCceeecCCCCChhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDA--ANFMLYIQSKTGGITGWEPAGAPSW   80 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~a--v~~Ll~~Q~~dGgw~~~~~~~~~~~   80 (212)
                      +|++.|||++.   ...|++.+|+.+|.+|..+...+           ..+++  ++||+++|++||||...+..     
T Consensus         7 ~Q~~dGgw~~~---~~~~~~~~T~~al~aL~~~g~~~-----------~~~~~~~~~~L~~~q~~dGg~~~~~~~-----   67 (113)
T PF13249_consen    7 RQNPDGGWGGF---GGPSDVWDTAFALLALAALGEEP-----------DRDRAAAVEWLLSQQNPDGGWGSNPDG-----   67 (113)
T ss_dssp             HB-TTSSBBSS---TS-BEHHHHHHHHHHHHHHTSHH-----------CHHHHHHHHHHHHHB-TTSGBBSSTTT-----
T ss_pred             HcCCCCCCcCC---CCCCCHHHHHHHHHHHHHhCCcc-----------cHHHHHHHHHHHHhCCCCCCccCCCCC-----
Confidence            58999999985   45788999999999999985421           14455  99999999999999954311     


Q ss_pred             hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCc
Q 028222           81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSW  146 (212)
Q Consensus        81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w  146 (212)
                                     .++++..|+.++.+|..++....       .+.++|+++||++.|++||+|
T Consensus        68 ---------------~~~~~~~t~~~l~~l~~~~~~~~-------~~~~~~a~~~l~~~Q~~dGg~  111 (113)
T PF13249_consen   68 ---------------GPPDVYTTYVALAALELLGRPDD-------EEAVRKAVDWLLSCQNPDGGW  111 (113)
T ss_dssp             ---------------T-BSHHHHHHHHHHHHHHT-GGC-------HTTHCCHHHHHHHTB-TTSSB
T ss_pred             ---------------CCccHHHHHHHHHHHHHcCCCcc-------cHHHHHHHHHHHHhcCCCCCC
Confidence                           12345568888888877654211       357999999999999999999

...

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=99.67  E-value=2.3e-15  Score=128.45  Aligned_cols=165  Identities=13%  Similarity=0.061  Sum_probs=118.1

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL   83 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~   83 (212)
                      |+++|||++-.. + .+++=.||.|+++|..+.+.     + .++++.+.++++||+++|++||+|....+-.+..+   
T Consensus        65 q~~dGsf~~w~~-~-~~s~wlTA~v~~~l~~a~~~-----~-~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m---  133 (297)
T cd02896          65 RKPDGSYAAWKN-R-PSSTWLTAFVVKVFSLARKY-----I-PVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM---  133 (297)
T ss_pred             cCCCCCccCCCC-C-CcchhhHHHHHHHHHHHHHc-----C-CCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc---
Confidence            668999994322 2 33444799999999998652     1 46788999999999999999999985322111110   


Q ss_pred             cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHH
Q 028222           84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAIS  163 (212)
Q Consensus        84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~  163 (212)
                            .+....+++.+..||.|+.+|...+...+.. ..++..+|+||++||.+.|.+-         ...|+++++..
T Consensus       134 ------~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~-~~~~~~~i~rA~~yL~~~~~~~---------~~~Y~~Al~ay  197 (297)
T cd02896         134 ------TGGVEGSEGDVSLTAFVLIALQEARSICPPE-VQNLDQSIRKAISYLENQLPNL---------QRPYALAITAY  197 (297)
T ss_pred             ------cCCccccCCCccchHHHHHHHHhhhcccccc-chhhHHHHHHHHHHHHHhcccC---------CChHHHHHHHH
Confidence                  1111112356778999999999886432211 1234578999999999988751         34788999889


Q ss_pred             HHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccC
Q 028222          164 GLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYL  200 (212)
Q Consensus       164 aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~  200 (212)
                      ||..+|.+     ...++.++|++.|+.||+|+....
T Consensus       198 ALal~~~~-----~~~~a~~~L~~~~~~d~~~~~~~~  229 (297)
T cd02896         198 ALALADSP-----LSHAANRKLLSLAKRDGNGWYWWT  229 (297)
T ss_pred             HHHHcCCh-----hhHHHHHHHHHHhhhCCCcceecc
Confidence            99888754     678899999999999999986543

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]

Probab=99.65  E-value=3.5e-16  Score=141.93  Aligned_cols=151  Identities=20%  Similarity=0.281  Sum_probs=120.5

Q ss_pred             CCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccC
Q 028222           19 LPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHD   98 (212)
Q Consensus        19 ~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~   98 (212)
                      ++.++||..++.+|....+..|+++..++ ...|++|+.||.+.|.+||+|.+-.+       .    +.++        
T Consensus       559 ~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei-~~~i~~av~~ie~~Q~~DGSWyGsWg-------v----CFtY--------  618 (760)
T KOG0497|consen  559 YEYVECTSSAIQALVYFHKLFPGHRKKEI-EKSIEKAVEFIEKLQLPDGSWYGSWG-------V----CFTY--------  618 (760)
T ss_pred             ecccccHHHHHHHHHhhcccCccHHHHHH-HHHHHHHHHHHHHcCCCCCcccchhh-------H----HHHH--------
Confidence            46799999999999998887665544433 68899999999999999999974211       1    1112        


Q ss_pred             ccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-------------cchhhHHHHHHHHH
Q 028222           99 YVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-------------VCFIYSTWWAISGL  165 (212)
Q Consensus        99 ~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-------------~~~~~~T~~al~aL  165 (212)
                         .|-.++.+|+..+..+.+      ..+++||++||++.|++||+|+...-             .+.+.+|++|+++|
T Consensus       619 ---~t~Fa~~gl~aaGkty~n------c~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~L  689 (760)
T KOG0497|consen  619 ---GTWFALRGLAAAGKTYEN------CEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMAL  689 (760)
T ss_pred             ---HHHHhcchhhhcchhhhc------cHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHH
Confidence               377788888888765433      47899999999999999999964431             23467899999999


Q ss_pred             HHcCcCCCChHHHHHHHHHHHhcccCCCccccc
Q 028222          166 VAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       166 ~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~  198 (212)
                      ..+|...++.-.+.||++.|++.|.++|.|+..
T Consensus       690 i~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq  722 (760)
T KOG0497|consen  690 IMAGQAERDPLPLHRAAKVLINSQLENGDFPQQ  722 (760)
T ss_pred             HhcCCcccccchHHHHHHHHHhcccccCCcchh
Confidence            999998766668999999999999999999864

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=99.65  E-value=1.8e-15  Score=128.50  Aligned_cols=164  Identities=16%  Similarity=0.186  Sum_probs=117.7

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL   83 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~   83 (212)
                      |++.|||+.+.  ..-+|.--|=.++.+|..+...         ....++++++||+++|++||||+.-+..        
T Consensus       113 q~~dGgf~~~~--~~e~d~~~ty~a~~~l~ll~~~---------~~i~~~~~~~~l~~~q~~dGGF~~~~~~--------  173 (287)
T cd02894         113 QNEDGSFSGDK--WGEVDTRFSYCAVLCLTLLGKL---------DLIDVDKAVDYLLSCYNFDGGFGCRPGA--------  173 (287)
T ss_pred             cCCCCCeecCC--CCCchHHHHHHHHHHHHHhCCc---------chhhHHHHHHHHHHcCCCCCCcCCCCCC--------
Confidence            78899999863  2223332366666666665321         1234799999999999999999842211        


Q ss_pred             cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHHH
Q 028222           84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWAI  162 (212)
Q Consensus        84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~al  162 (212)
                                   .+++-.|+.++.+|..++....        ..+++.++||+++|.++|+|.++-+ .....-|.+++
T Consensus       174 -------------es~~~~t~cavasL~llg~~~~--------~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~  232 (287)
T cd02894         174 -------------ESHAGQIFCCVGALAILGSLDL--------IDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVL  232 (287)
T ss_pred             -------------CCchhHHHHHHHHHHHcCcccc--------cCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHH
Confidence                         1344458889999998864321        2378899999999999999976543 23456678888


Q ss_pred             HHHHHcCcCCCChHHHHHHHHHHHhccc-CCCccccccCcCCCCcccc
Q 028222          163 SGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~-~dGgw~~~~~s~~~~~y~~  209 (212)
                      .+|..+|...  ....++.++||+++|+ ++|||...+...++..|+.
T Consensus       233 a~l~~l~~~~--~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~  278 (287)
T cd02894         233 SSLKIIGRLH--WINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTF  278 (287)
T ss_pred             HHHHHhcccc--ccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHH
Confidence            8998887653  3447888999999995 7999998887777766654

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=9.7e-15  Score=119.29  Aligned_cols=122  Identities=24%  Similarity=0.329  Sum_probs=98.9

Q ss_pred             HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222           52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN  131 (212)
Q Consensus        52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r  131 (212)
                      -++.|.|+++||+.+|||+.+++..                     +++-.|-.|++.|+.+...+-        --+.|
T Consensus        68 ~eeiv~~v~~C~~~~GGfa~~~Ghd---------------------~hll~TlsAvQiL~~ydsi~~--------~d~d~  118 (329)
T KOG0366|consen   68 REEIVSFVLSCQHEDGGFAGCPGHD---------------------PHLLYTLSAVQILALYDSINV--------LDRDK  118 (329)
T ss_pred             HHHHHHHHHheecCCCCcCCCCCCC---------------------hHHHHHHHHHHHHHHHccccc--------ccHHH
Confidence            5788999999999999999765421                     234458889999998865421        12466


Q ss_pred             HHHHHHhccccCCCcCC-CCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCC
Q 028222          132 GVKFTEDSQKLDGSWYG-TWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPN  204 (212)
Q Consensus       132 a~~~L~~~Q~~dG~w~g-~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~  204 (212)
                      .+.|+...|++||+|.| .||...+..+.+|+.+|.-+|..  +...+++|++|+++|-|-|||||-.|..-+-
T Consensus       119 v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~l--d~~nve~aVd~~~~CyN~DGGFG~~pGaESH  190 (329)
T KOG0366|consen  119 VASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKL--DTINVEKAVDFVLSCYNFDGGFGCRPGAESH  190 (329)
T ss_pred             HHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhH--HHhhHHHHHHHHHhhcccCCCcCCCCCcccc
Confidence            79999999999999965 68887778888899999999887  3678999999999999999999988765443

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=99.59  E-value=2.5e-14  Score=122.15  Aligned_cols=149  Identities=17%  Similarity=0.085  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHH
Q 028222           25 SSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTA  104 (212)
Q Consensus        25 Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta  104 (212)
                      +--+|.+|..+..        +......++.++||+++|++||||+....                     +++++..|.
T Consensus        30 ~y~~l~~l~lL~~--------~~~~~~~~~~i~~i~~~q~~~GgF~~~~~---------------------~~~h~~~Ty   80 (299)
T cd02893          30 LYWILHSLELLGE--------ELDQSYADDVISFLRRCQNPSGGFGGGPG---------------------QLPHLATTY   80 (299)
T ss_pred             HHHHHHHHHHhCC--------cccHHHHHHHHHHHHHhcCCCCCCCCCCC---------------------CCccHHHHH
Confidence            3445666666643        23456689999999999999999984211                     234566799


Q ss_pred             HHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCC-CccchhhHHHHHHHHHHHcCcCCCChHHHHHHHH
Q 028222          105 SALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATD  183 (212)
Q Consensus       105 ~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~-~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~  183 (212)
                      .++.+|..++... ..  ..  ...++.++||++.|++||+|... .+..+...|.+|+..+..++..  ....++++++
T Consensus        81 ~A~~~L~ll~~~~-~~--~~--id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~--~~~~~~~~~~  153 (299)
T cd02893          81 AAVNALAIIGTEE-AY--DV--IDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNIL--TDELFEGVAE  153 (299)
T ss_pred             HHHHHHHHhCCch-hh--hH--hhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCC--chhhHHHHHH
Confidence            9999998885310 00  11  12456899999999999999643 3344556677777777767765  3567899999


Q ss_pred             HHHhcccCCCccccccCcCCCCcccc
Q 028222          184 FLLNIQCDDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       184 ~Ll~~Q~~dGgw~~~~~s~~~~~y~~  209 (212)
                      ||++||+.||||+..+..-+...||+
T Consensus       154 ~l~~cQ~~dGGF~~~p~~e~h~~yTf  179 (299)
T cd02893         154 YILSCQTYEGGFGGVPGNEAHGGYTF  179 (299)
T ss_pred             HHHHcCCCCCCcCCCCCCCCCccHHH
Confidence            99999999999998877667677664

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=99.57  E-value=2.8e-14  Score=122.71  Aligned_cols=164  Identities=14%  Similarity=0.114  Sum_probs=116.1

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL   83 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~   83 (212)
                      |.+.|||+-..  ...+..-.|-.++.+|..+.+.         ..-..+++++||.++|++||||..-..+        
T Consensus        69 q~~~GGF~~~~--~~~~h~~~Ty~al~~L~ll~~~---------~~id~~~~~~~l~s~Q~~dGgF~~~~~g--------  129 (316)
T PLN03201         69 QHESGGFGGNT--GHDPHILYTLSAVQILALFDRL---------DLLDADKVASYVAGLQNEDGSFSGDEWG--------  129 (316)
T ss_pred             cCCCCCcCCCC--CCcccHHHHHHHHHHHHHhhhh---------hhhhHHHHHHHHHHhcCCCCCccCCCCC--------
Confidence            67889998432  2345666677777777776321         1223578999999999999999842111        


Q ss_pred             cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCC-ccchhhHHHHHH
Q 028222           84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAI  162 (212)
Q Consensus        84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~-~~~~~~~T~~al  162 (212)
                                   ..++..|..++.+|..++...        ...++++++||++.|++||||.+.- +..+.-.|.+|+
T Consensus       130 -------------e~D~r~ty~a~a~l~LL~~~~--------~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~cai  188 (316)
T PLN03201        130 -------------EIDTRFSYCALCCLSLLKRLD--------KINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCV  188 (316)
T ss_pred             -------------CccHHHHHHHHHHHHHhCccc--------hhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHH
Confidence                         112223667777777664321        1247899999999999999997542 233444588999


Q ss_pred             HHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222          163 SGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~  209 (212)
                      .+|.-+|....  ...++.++||+++|..+|||...+..-++..|+.
T Consensus       189 aaL~llg~~~~--~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~  233 (316)
T PLN03201        189 GALAITGSLHH--VDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSW  233 (316)
T ss_pred             HHHHHcCcccc--CCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHH
Confidence            99998886531  2246678999999999999999998888888875

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=99.56  E-value=7e-14  Score=119.83  Aligned_cols=174  Identities=13%  Similarity=0.052  Sum_probs=117.9

Q ss_pred             CCCCccccccC-----CC---CCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCC
Q 028222            5 ISKGGWTFSDK-----DH---GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAG   76 (212)
Q Consensus         5 ~~~Ggw~~~~~-----~~---~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~   76 (212)
                      .+.|||+=+..     +.   ..++.-.|=.++.+|..+...        ......++.++||+++|++||||+..... 
T Consensus        67 ~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~--------~~~idr~~i~~~l~~~q~~dGgF~~~~~~-  137 (307)
T cd02895          67 LPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDD--------LSRVDRKAILNFLSKLQLPDGSFGSVLDS-  137 (307)
T ss_pred             CCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCc--------hhhhhHHHHHHHHHHhCCCCCCccCCcCC-
Confidence            77898874321     01   123333455555555555331        11223588999999999999999854200 


Q ss_pred             ChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCC-Cccchh
Q 028222           77 APSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGT-WGVCFI  155 (212)
Q Consensus        77 ~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~-~~~~~~  155 (212)
                                       ....++...|..+|.+|..++...+    +.  .-+++.++||++.|++||+|... .+..+.
T Consensus       138 -----------------~~~e~d~r~ty~Av~~l~lL~~~~~----~~--~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~  194 (307)
T cd02895         138 -----------------EGGENDMRFCYCAVAICYMLDDWSE----ED--IDKEKLIDYIKSSQSYDGGFGQGPGLESHG  194 (307)
T ss_pred             -----------------cCCCccHHHHHHHHHHHHHhCCCcc----cc--ccHHHHHHHHHHccCCCCCccCCCCCCccc
Confidence                             0012344458888888887764321    00  13688999999999999999643 233444


Q ss_pred             hHHHHHHHHHHHcCcCCC-ChHHHHHHHHHHHhcccCCCccccccCcCCCCccccc
Q 028222          156 YSTWWAISGLVAAEKTYS-NCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNR  210 (212)
Q Consensus       156 ~~T~~al~aL~~~g~~~~-~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~~  210 (212)
                      -.|.+|+.+|..++.... ....+++.++||+++|+.+|||+..+..-++..|++-
T Consensus       195 g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw  250 (307)
T cd02895         195 GSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFW  250 (307)
T ss_pred             cHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhH
Confidence            568899999998887520 1467899999999999999999999988888888763

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>PLN02710 farnesyltranstransferase subunit beta

Probab=99.56  E-value=3.8e-14  Score=125.68  Aligned_cols=135  Identities=16%  Similarity=0.096  Sum_probs=100.5

Q ss_pred             CcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHH
Q 028222           47 MEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVN  126 (212)
Q Consensus        47 ~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~  126 (212)
                      ..++..++.++||.++|++||||+..++                     +.+++..|..+|.+|..++.. ....  .+ 
T Consensus        89 l~~~~~~~ii~~l~~cQ~~dGGFgg~pg---------------------~~~hl~~TY~Av~~L~iLg~~-~~l~--~I-  143 (439)
T PLN02710         89 LDDELENDTIDFLSRCQDPNGGYGGGPG---------------------QLPHLATTYAAVNTLVTIGGE-RALS--SI-  143 (439)
T ss_pred             ccHHHHHHHHHHHHHhcCCCcCCCCCCC---------------------CCccHHHHHHHHHHHHHcCCc-hhhc--cc-
Confidence            4456678999999999999999985432                     124556799999999988632 0111  01 


Q ss_pred             HHHHHHHHHHHhccccCCCcCCC-CccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCC
Q 028222          127 NFITNGVKFTEDSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNK  205 (212)
Q Consensus       127 ~~i~ra~~~L~~~Q~~dG~w~g~-~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~  205 (212)
                       -.++.++||++.|++||+|.+. ++...+..|.+|+..|..++..  ....+++.++||++||+.||||+..+..-+..
T Consensus       144 -dr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l--~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~  220 (439)
T PLN02710        144 -NREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNIL--DDELVKGVGDYILSCQTYEGGIGGEPGAEAHG  220 (439)
T ss_pred             -CHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcC--chhhHHHHHHHHHHhCCCCCCCCCCCCCCCch
Confidence             2467899999999999999643 3444456677777777777764  35678999999999999999999988777777


Q ss_pred             cccc
Q 028222          206 LHMN  209 (212)
Q Consensus       206 ~y~~  209 (212)
                      .|++
T Consensus       221 gyTf  224 (439)
T PLN02710        221 GYTF  224 (439)
T ss_pred             HHHH
Confidence            6664

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=99.56  E-value=8e-14  Score=119.07  Aligned_cols=167  Identities=16%  Similarity=0.134  Sum_probs=117.1

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL   83 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~   83 (212)
                      |.+.||++-.  ....++.--|=.++.+|..+...+      -...-..+++++||+++|++||||..-...        
T Consensus        60 q~~~GgF~~~--~~~~~h~~~Ty~A~~~L~ll~~~~------~~~~id~~~~~~~l~~~q~~dGgf~~~~~~--------  123 (299)
T cd02893          60 QNPSGGFGGG--PGQLPHLATTYAAVNALAIIGTEE------AYDVIDREALYKFLLSLKQPDGSFRMHVGG--------  123 (299)
T ss_pred             cCCCCCCCCC--CCCCccHHHHHHHHHHHHHhCCch------hhhHhhHHHHHHHHHHhcCCCCCeeCCCCC--------
Confidence            6788988874  233566656777777777764311      011233567999999999999999843211        


Q ss_pred             cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHHH
Q 028222           84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWAI  162 (212)
Q Consensus        84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~al  162 (212)
                                   .++...|..++..+..++...        ...+++.++||++.|+.||||.++-+ ..+.-.|.+++
T Consensus       124 -------------e~D~r~tycava~~~lL~~~~--------~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcav  182 (299)
T cd02893         124 -------------EVDVRGTYCAISVASLLNILT--------DELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCAL  182 (299)
T ss_pred             -------------CchHhHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHH
Confidence                         123334666666666554321        13578999999999999999965432 23344588899


Q ss_pred             HHHHHcCcCCCChHHHHHHHHHHHhcccC-CCccccccCcCCCCcccc
Q 028222          163 SGLVAAEKTYSNCLAIRKATDFLLNIQCD-DGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~-dGgw~~~~~s~~~~~y~~  209 (212)
                      .+|..+|...  ...+++.++||+++|.+ +|||...+..-++..|+.
T Consensus       183 asL~llg~~~--~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~  228 (299)
T cd02893         183 AALAILGKPD--KLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSF  228 (299)
T ss_pred             HHHHHcCCcc--ccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHH
Confidence            9999888753  34689999999999988 999999888888887765

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=99.54  E-value=8.2e-14  Score=119.40  Aligned_cols=172  Identities=17%  Similarity=0.178  Sum_probs=118.6

Q ss_pred             CCCCCccccccC-CCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            4 HISKGGWTFSDK-DHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         4 ~~~~Ggw~~~~~-~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      |.+.|||+-... ...-+|.--|=.++.+|..+....+       .....++.++||+++|+.||||+..+.        
T Consensus       125 q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~-------~~~d~~~li~~l~s~Q~~dGGF~~~~~--------  189 (307)
T cd02895         125 QLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE-------EDIDKEKLIDYIKSSQSYDGGFGQGPG--------  189 (307)
T ss_pred             CCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc-------ccccHHHHHHHHHHccCCCCCccCCCC--------
Confidence            678899885431 1233454455555555555533210       112468999999999999999984321        


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHH
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWA  161 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~a  161 (212)
                                   ..++...|..++.+|..++.... ..    ...+++.++||+++|..+|||.++-+ .....-|.++
T Consensus       190 -------------~Esh~g~Tyca~asL~lL~~~~~-~~----~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~  251 (307)
T cd02895         190 -------------LESHGGSTFCAIASLSLLGKLEE-LS----EKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWV  251 (307)
T ss_pred             -------------CCccccHHHHHHHHHHHcCCccc-cc----cccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHH
Confidence                         12344468889999988865320 00    12478899999999999999977643 2344567788


Q ss_pred             HHHHHHcCcCCCChHHHHHHHHHHHhccc-CCCccccccCcCCCCccccc
Q 028222          162 ISGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESYLSCPNKLHMNR  210 (212)
Q Consensus       162 l~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~-~dGgw~~~~~s~~~~~y~~~  210 (212)
                      +.+|.-++..  ....+++..+||+++|+ .+|||...+...++..|++.
T Consensus       252 ~a~L~iL~~~--~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~  299 (307)
T cd02895         252 GASLKLLDAF--QLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYL  299 (307)
T ss_pred             HHHHHHcCcc--cccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHHH
Confidence            8888888764  24567889999999886 59999999998888877653

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>PLN02710 farnesyltranstransferase subunit beta

Probab=99.49  E-value=5.9e-13  Score=118.10  Aligned_cols=167  Identities=12%  Similarity=0.121  Sum_probs=116.4

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL   83 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~   83 (212)
                      |++.|||+=.  ....++.--|=.++.+|..+.... .     ...-..++.++||+++|++||||......        
T Consensus       105 Q~~dGGFgg~--pg~~~hl~~TY~Av~~L~iLg~~~-~-----l~~Idr~~l~~fl~s~q~~dGgF~~~~~g--------  168 (439)
T PLN02710        105 QDPNGGYGGG--PGQLPHLATTYAAVNTLVTIGGER-A-----LSSINREKLYTFLLRMKDPSGGFRMHDGG--------  168 (439)
T ss_pred             cCCCcCCCCC--CCCCccHHHHHHHHHHHHHcCCch-h-----hcccCHHHHHHHHHHcCCCCCCcccCCCC--------
Confidence            6678988742  223455555666777777664311 0     11112578899999999999999853221        


Q ss_pred             cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCC-ccchhhHHHHHH
Q 028222           84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAI  162 (212)
Q Consensus        84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~-~~~~~~~T~~al  162 (212)
                                   ..++..|..|+..|..++...+        .-+++.++||++.|+.||||.++- ...+.-.|.+++
T Consensus       169 -------------E~D~R~tYcAlail~LL~~l~~--------~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcav  227 (439)
T PLN02710        169 -------------EMDVRACYTAISVASLLNILDD--------ELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGL  227 (439)
T ss_pred             -------------CCCcCCcHHHHHHHHHhCcCch--------hhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHH
Confidence                         1234457777776666643211        246889999999999999997653 233445588899


Q ss_pred             HHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222          163 SGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~  209 (212)
                      .+|.-+|...  ...+++.++||+++|+.+|||...+.--.+.+|..
T Consensus       228 AsL~LLg~l~--~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSf  272 (439)
T PLN02710        228 AAMILINEVD--RLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSF  272 (439)
T ss_pred             HHHHHcCCcc--ccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhH
Confidence            9998888653  34578899999999999999999998888887754

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.47  E-value=5.2e-13  Score=113.57  Aligned_cols=114  Identities=15%  Similarity=0.105  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222           52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN  131 (212)
Q Consensus        52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r  131 (212)
                      |+.++..|+++|++||||+.|....                   +++++-.|+.|+.+|.......+. +    +.+++|
T Consensus        51 l~~g~~~~~~~q~~dGsf~~w~~~~-------------------~~~~~wlTa~v~~~L~~a~~~~~v-~----~~~i~r  106 (292)
T cd02897          51 LRTGYQRQLTYKHSDGSYSAFGESD-------------------KSGSTWLTAFVLKSFAQARPFIYI-D----ENVLQQ  106 (292)
T ss_pred             HHHHHHHHHhccCCCCCeecccCCC-------------------CCcchhhHHHHHHHHHHHhccCCC-C----HHHHHH
Confidence            6666666677999999998663210                   123444699999999987632221 1    468999


Q ss_pred             HHHHHHhccccCCCcCCCC---------c-cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhccc
Q 028222          132 GVKFTEDSQKLDGSWYGTW---------G-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC  190 (212)
Q Consensus       132 a~~~L~~~Q~~dG~w~g~~---------~-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~  190 (212)
                      +++||+++|++||+|....         + ......|++++.+|...|... ..+.++++++||.+.+.
T Consensus       107 a~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~-~~~~i~~a~~yL~~~~~  174 (292)
T cd02897         107 ALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPS-ERPVVEKALSCLEAALD  174 (292)
T ss_pred             HHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCcc-ccHHHHHHHHHHHHhcc
Confidence            9999999999999996311         0 122457999999999988754 56777888888877654

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=99.42  E-value=2.7e-14  Score=103.88  Aligned_cols=69  Identities=39%  Similarity=0.533  Sum_probs=19.4

Q ss_pred             HHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222          129 ITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY  199 (212)
Q Consensus       129 i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~  199 (212)
                      |+++++||++.|++||+|...++ ...+.|.+++.+|..++... ..+.|+|+++||+++|++||||+...
T Consensus         1 i~~~~~~l~~~Q~~dG~W~~~~~-~~~~~t~~~~~al~~~~~~~-~~~ai~ka~~~l~~~Q~~dG~w~~~~   69 (109)
T PF13243_consen    1 IKRAAEWLLSQQNPDGSWGYNWG-SDVFVTAALILALAAAGDAA-VDEAIKKAIDWLLSHQNPDGGWGYSG   69 (109)
T ss_dssp             -----------------------------------------TS--SSBSSHHHHHHHHH---TTS--S-TS
T ss_pred             Ccccccccccccccccccccccc-ccccccccccccccccCCCC-cHHHHHHHHHHHHHhcCCCCCCCCcC
Confidence            57899999999999999987776 34678889999999988653 68899999999999999999999763

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=99.40  E-value=7e-12  Score=104.33  Aligned_cols=172  Identities=16%  Similarity=0.156  Sum_probs=111.6

Q ss_pred             CCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhh
Q 028222            2 FRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWI   81 (212)
Q Consensus         2 ~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~   81 (212)
                      || +++|+|..-. ...-+++=.||.|++.|..+.+.      ..++++.|.++++||+++|++||.|....+-.+..+.
T Consensus         9 y~-~~DGsfs~f~-~~~~~s~WLTAfv~k~f~~a~~~------i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~   80 (246)
T PF07678_consen    9 YR-RSDGSFSAFS-SDSPSSTWLTAFVVKVFSQAKKY------IFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQ   80 (246)
T ss_dssp             TB--TTSSBBSST-TTSSBBHHHHHHHHHHHHHHTTT------S-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGS
T ss_pred             CC-CCCCCeeccc-cCCcccHHHHHHHHHHHHHHHHh------hcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccC
Confidence            44 6799999322 33345555899999999998653      3578899999999999999999999743221111110


Q ss_pred             hhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcC--------------
Q 028222           82 ELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWY--------------  147 (212)
Q Consensus        82 ~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~--------------  147 (212)
                      ..            -...+..||.|+.+|...+...+. ....+..+++||++||.+....--.-+              
T Consensus        81 g~------------~~~~~~lTA~VliAL~e~~~~~~~-~~~~~~~~i~kA~~~L~~~~~~~~~~Y~lAl~aYAL~la~~  147 (246)
T PF07678_consen   81 GG------------VEDDIALTAYVLIALLEAGSLCDS-EKPEYENAINKALNYLERHLDNIQDPYTLALVAYALALAGD  147 (246)
T ss_dssp             GG------------GTHHHHHHHHHHHHHHHCHCCHTT-THHCHHHHHHHHHHHHHHHHGCTSSHHHHHHHHHHHHHTTT
T ss_pred             CC------------CCCCeeehHHHHHHHHhhhhhccc-cchhhHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhhcc
Confidence            00            022455799999999987622111 123456778888888876522111100              


Q ss_pred             ---------------------CCCc----------------cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhccc
Q 028222          148 ---------------------GTWG----------------VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC  190 (212)
Q Consensus       148 ---------------------g~~~----------------~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~  190 (212)
                                           -.|.                ...+..|++||+++...+    +.+.+.+.++||.++|+
T Consensus       148 ~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~----~~~~~~~iv~WL~~qr~  223 (246)
T PF07678_consen  148 SPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRG----DLEEASPIVRWLISQRN  223 (246)
T ss_dssp             CHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHCTT
T ss_pred             cchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHhcC
Confidence                                 0011                112467899999998882    35688999999999999


Q ss_pred             CCCccccc
Q 028222          191 DDGGWGES  198 (212)
Q Consensus       191 ~dGgw~~~  198 (212)
                      ..|||+..
T Consensus       224 ~~Ggf~ST  231 (246)
T PF07678_consen  224 SGGGFGST  231 (246)
T ss_dssp             TTSSTSSH
T ss_pred             CCCccCcH
Confidence            99999864

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=99.40  E-value=3.6e-12  Score=108.81  Aligned_cols=117  Identities=23%  Similarity=0.224  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHH
Q 028222           49 PERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNF  128 (212)
Q Consensus        49 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~  128 (212)
                      .+.|++++..|+++|++||||+.|....                     +++-.|+.|+.+|.......+ -.    +..
T Consensus        51 ~~~i~~g~~r~l~~q~~dGsf~~w~~~~---------------------~s~wlTA~v~~~l~~a~~~~~-v~----~~~  104 (297)
T cd02896          51 LKYIRQGYQRQLSYRKPDGSYAAWKNRP---------------------SSTWLTAFVVKVFSLARKYIP-VD----QNV  104 (297)
T ss_pred             HHHHHHHHHHHHhccCCCCCccCCCCCC---------------------cchhhHHHHHHHHHHHHHcCC-CC----HHH
Confidence            4669999999999999999998764321                     223359999999998865321 11    468


Q ss_pred             HHHHHHHHHhccccCCCcCCCC--------c-----cchhhHHHHHHHHHHHcCcCC-----CChHHHHHHHHHHHhccc
Q 028222          129 ITNGVKFTEDSQKLDGSWYGTW--------G-----VCFIYSTWWAISGLVAAEKTY-----SNCLAIRKATDFLLNIQC  190 (212)
Q Consensus       129 i~ra~~~L~~~Q~~dG~w~g~~--------~-----~~~~~~T~~al~aL~~~g~~~-----~~~~~i~~a~~~Ll~~Q~  190 (212)
                      +.|+++||+++|++||+|....        +     .....-|++++.+|...+...     ...+.++||++||.++|.
T Consensus       105 l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~  184 (297)
T cd02896         105 ICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLP  184 (297)
T ss_pred             HHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhcc
Confidence            9999999999999999996432        1     023456999999999987642     135689999999999886


Q ss_pred             C
Q 028222          191 D  191 (212)
Q Consensus       191 ~  191 (212)
                      +
T Consensus       185 ~  185 (297)
T cd02896         185 N  185 (297)
T ss_pred             c
Confidence            4

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.37  E-value=8.9e-12  Score=104.89  Aligned_cols=116  Identities=21%  Similarity=0.169  Sum_probs=89.5

Q ss_pred             cHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHH
Q 028222           48 EPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNN  127 (212)
Q Consensus        48 ~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~  127 (212)
                      ..+.|++++.+|+++|++||||+.|....                    .+++-.|+.|+.+|.........     -.+
T Consensus        47 ~~~~i~~~~~~l~~~Q~~dGgf~~w~~~~--------------------~~~~~~Ta~~~~~L~~a~~~~~v-----~~~  101 (282)
T cd02891          47 ALEYIRKGYQRLLTYQRSDGSFSAWGNSD--------------------SGSTWLTAYVVKFLSQARKYIDV-----DEN  101 (282)
T ss_pred             HHHHHHHHHHHHHhhcCCCCCccccCCCC--------------------CCchHHHHHHHHHHHHHHHcCCC-----CHH
Confidence            46789999999999999999999664321                    23344699999999987653211     136


Q ss_pred             HHHHHHHHHHhccccCCCcCCCCcc----------chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhccc
Q 028222          128 FITNGVKFTEDSQKLDGSWYGTWGV----------CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC  190 (212)
Q Consensus       128 ~i~ra~~~L~~~Q~~dG~w~g~~~~----------~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~  190 (212)
                      .++|+++||++.|++||+|...+..          .....|++++.+|...|...  .+.+.++++||.+...
T Consensus       102 ~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~~~--~~~~~~a~~~L~~~~~  172 (282)
T cd02891         102 VLARALGWLVPQQKEDGSFRELGPVIHREMKGGVDDSVSLTAYVLIALAEAGKAC--DASIEKALAYLETQLD  172 (282)
T ss_pred             HHHHHHHHHHhccCCCCCcCCCCCccCHhhcCCcCCCcchHHHHHHHHHHhcccc--hHHHHHHHHHHHHhcc
Confidence            8999999999999999999654332          22357999999999998753  6788999999998764

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=2.4e-11  Score=101.87  Aligned_cols=155  Identities=21%  Similarity=0.314  Sum_probs=105.0

Q ss_pred             CCCCCccccccCCCCCCCCccH--HHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCS--SESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWI   81 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~T--a~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~   81 (212)
                      |.|.|++.-...  +-.|++.-  |..+.+|+.  .         .+.+-.+.+|+||++|||=||||+.-+.       
T Consensus       139 k~pdGsF~~~~~--gevDtr~~Y~al~ilsllg--~---------~~~~~~e~~vdyl~kCqnyeGGFg~~p~-------  198 (342)
T COG5029         139 KNPDGSFRSDLE--GEVDTRFLYIALSILSLLG--D---------LDKELFEGAVDYLKKCQNYEGGFGLCPY-------  198 (342)
T ss_pred             cCCCCceecccC--CcchHHHHHHHHHHHHHHh--h---------cchhhhHHHHHHHHHhhccCCcccCCCc-------
Confidence            678888875331  33344432  333333322  2         3456678999999999999999995322       


Q ss_pred             hhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc----cchhhH
Q 028222           82 ELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG----VCFIYS  157 (212)
Q Consensus        82 ~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~----~~~~~~  157 (212)
                           .|+         |...|..|+.+|+.++.+.+-       ..+++-+.||.++|.+.||+.|+-.    .|+   
T Consensus       199 -----aEa---------Hag~tFcalaalalL~~Ld~l-------s~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CY---  254 (342)
T COG5029         199 -----AEA---------HAGYTFCALAALALLGKLDKL-------SDVEKLIRWLAERQLSSGGLNGRSNKLVDTCY---  254 (342)
T ss_pred             -----hhh---------ccchHHHHHHHHHHHhccccc-------chHHHHHHHHHHcccccCCcCCCcccCccchh---
Confidence                 232         334688899999998876442       2378899999999999999987632    222   


Q ss_pred             HHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccC-CCccccccCcCCC
Q 028222          158 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD-DGGWGESYLSCPN  204 (212)
Q Consensus       158 T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~-dGgw~~~~~s~~~  204 (212)
                      ..|++..|.-++...  .-.-++-.+||+.||++ .|||.+.+...++
T Consensus       255 s~WvlsSl~il~~~~--~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D  300 (342)
T COG5029         255 SFWVLSSLAILGKLD--FINTEELTDYILDCQQETSGGFSDRPGEEPD  300 (342)
T ss_pred             hhhhcchHHhcchhh--hcCHHHHHHHHHhhcccCCCCCCCCCcccch
Confidence            446666666666432  33456677999999987 9999988765544

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=7.9e-11  Score=99.85  Aligned_cols=128  Identities=18%  Similarity=0.135  Sum_probs=95.6

Q ss_pred             CCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHH
Q 028222           46 KMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEV  125 (212)
Q Consensus        46 ~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i  125 (212)
                      .++++..+++|++|..+|.|.|||++-++.                     .++...|+.+|.+|...+... .+     
T Consensus       116 ~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQ---------------------l~HLA~TYAAVnaL~~~~~e~-A~-----  168 (423)
T KOG0365|consen  116 WLDDDVKENAIDFLFTCQGPEGGFGGGPGQ---------------------LPHLAPTYAAVNALCLCGSED-AY-----  168 (423)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCCCCCCCcc---------------------chhhhHHHHHHHHHHhcCcHH-HH-----
Confidence            577899999999999999999999854321                     235556999999999986431 11     


Q ss_pred             HHHH--HHHHHHHHhccccCCCcCCC-CccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcC
Q 028222          126 NNFI--TNGVKFTEDSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSC  202 (212)
Q Consensus       126 ~~~i--~ra~~~L~~~Q~~dG~w~g~-~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~  202 (212)
                       ..|  ++..+||.+..++||||.-- -|...+.+..+|+....-+|+..  ++.-+--.+||.+||+-+||+|..|.+-
T Consensus       169 -~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~--deL~eG~~~wi~~CQtyEGG~GG~P~~E  245 (423)
T KOG0365|consen  169 -SSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPM--DELFEGTLDWIASCQTYEGGFGGEPGVE  245 (423)
T ss_pred             -HHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHhcccccCCcCCCcccc
Confidence             233  45699999999999999421 13344555556666666677774  5777888899999999999999888763


Q ss_pred             C
Q 028222          203 P  203 (212)
Q Consensus       203 ~  203 (212)
                      .
T Consensus       246 A  246 (423)
T KOG0365|consen  246 A  246 (423)
T ss_pred             c
Confidence            3

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4

Probab=99.26  E-value=1.5e-11  Score=103.59  Aligned_cols=177  Identities=12%  Similarity=0.211  Sum_probs=104.3

Q ss_pred             CCCCCccccccCC-------------------CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhccc
Q 028222            4 HISKGGWTFSDKD-------------------HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQS   64 (212)
Q Consensus         4 ~~~~Ggw~~~~~~-------------------~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~   64 (212)
                      |.+.|||.....-                   ....|.+.|...|.-|+.+-..    .+++.+.+++.|+++||++.|-
T Consensus         1 Q~~~GGW~Kn~d~~~~~~~~~~~~~~~~~~~~~~TiDN~aT~~ei~fLa~~y~~----t~d~~y~~A~~kgl~ylL~aQy   76 (289)
T PF09492_consen    1 QRPSGGWPKNIDYAGELSAKEQYYILKEKQHYNSTIDNDATTTEIRFLARVYQA----TKDPRYREAFLKGLDYLLKAQY   76 (289)
T ss_dssp             --TTSS-SSS--TTT----TT-SSS-------SCE-GGGTTHHHHHHHHHHHHH----CG-HHHHHHHHHHHHHHHHHS-
T ss_pred             CCCCCCCCCccccccccChhHhhhhhcccccccCcccChhHHHHHHHHHHHHHH----hCChHHHHHHHHHHHHHHHhhC
Confidence            6789999954210                   1124677889999999886542    2456788999999999999999


Q ss_pred             CCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCcc------chhHHHHHHHHHHHHHHh
Q 028222           65 KTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH------KKNEVNNFITNGVKFTED  138 (212)
Q Consensus        65 ~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~------~~~~i~~~i~ra~~~L~~  138 (212)
                      ++|||+.+.+.... ++..++    |++        ++...+|..|.......+.+      .+.++..++.||+++|+.
T Consensus        77 pnGGWPQ~yP~~~~-Y~~~IT----fND--------dam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~  143 (289)
T PF09492_consen   77 PNGGWPQFYPLRGG-YHDHIT----FND--------DAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILK  143 (289)
T ss_dssp             TTS--BSECS--SG-GGGSEE-----GG--------GHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCccCCCCCC-CCCceE----Ecc--------HHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999988665433 333444    433        23445666666554432222      335678999999999999


Q ss_pred             ccccCC----CcCCC---------Cccc------hhhHHHHHHHHHHHcCcC-CCChHHHHHHHHHHHhcccCCCcccc
Q 028222          139 SQKLDG----SWYGT---------WGVC------FIYSTWWAISGLVAAEKT-YSNCLAIRKATDFLLNIQCDDGGWGE  197 (212)
Q Consensus       139 ~Q~~dG----~w~g~---------~~~~------~~~~T~~al~aL~~~g~~-~~~~~~i~~a~~~Ll~~Q~~dGgw~~  197 (212)
                      .|...+    .|...         |...      ....|+-++.-|...-.+ ++.-.+|+.|++||.++..++.-|-.
T Consensus       144 tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki~g~~~~~  222 (289)
T PF09492_consen  144 TQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKIPGKRWEK  222 (289)
T ss_dssp             HS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSEEEEEE-G
T ss_pred             HHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcCCCceeEe
Confidence            998433    44211         1110      112466677777766533 22356889999999998877766543

2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.21  E-value=6.8e-10  Score=93.43  Aligned_cols=165  Identities=15%  Similarity=0.100  Sum_probs=102.2

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      +|++.|||++-.... .+++-+|+.++++|..+.+.     + .+.++.++++++||++.|++||+|..........+  
T Consensus        61 ~Q~~dGgf~~w~~~~-~~~~~~Ta~~~~~L~~a~~~-----~-~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~--  131 (282)
T cd02891          61 YQRSDGSFSAWGNSD-SGSTWLTAYVVKFLSQARKY-----I-DVDENVLARALGWLVPQQKEDGSFRELGPVIHREM--  131 (282)
T ss_pred             hcCCCCCccccCCCC-CCchHHHHHHHHHHHHHHHc-----C-CCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhh--
Confidence            488999999654332 66777999999999988652     2 45678999999999999999999985432111000  


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcC---------------
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWY---------------  147 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~---------------  147 (212)
                             ++   .+.+.+..|+.++.+|...+...        ...+.++++||.+.+...-+-+               
T Consensus       132 -------~~---~~~~~~~~tA~al~~L~~~g~~~--------~~~~~~a~~~L~~~~~~~~~~~~~a~la~al~~~g~~  193 (282)
T cd02891         132 -------KG---GVDDSVSLTAYVLIALAEAGKAC--------DASIEKALAYLETQLDGLLDPYALAILAYALALAGDS  193 (282)
T ss_pred             -------cC---CcCCCcchHHHHHHHHHHhcccc--------hHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHcCcc
Confidence                   00   01233456888888888765310        1345566666665544211110               


Q ss_pred             ----------------------------CCCcc-chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccc
Q 028222          148 ----------------------------GTWGV-CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       148 ----------------------------g~~~~-~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~  198 (212)
                                                  ...+. .....|++++.+....+    ......+.+.||++.++..|+|...
T Consensus       194 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~~~~~~----~~~~~~~~~~~L~~~~~~~~~~~sT  269 (282)
T cd02891         194 TRADEALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLALLKLG----DLEEAGPIAKWLAQQRNSGGGFLST  269 (282)
T ss_pred             HHHHHHHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHhcC----ChhhHHHHHHHHHHcCCCCCCcccH
Confidence                                        00010 12234555555554433    2346778899999988889999854

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=2.8e-10  Score=93.41  Aligned_cols=160  Identities=18%  Similarity=0.162  Sum_probs=109.0

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL   83 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~   83 (212)
                      |.+.|++.=..  .+--|+--+-.++.+|..+...         ..-.+++||+|+++|-|-||||+.-++.        
T Consensus       127 q~edGsF~gD~--wGEvDTRfs~~av~~L~lLg~l---------d~~nve~aVd~~~~CyN~DGGFG~~pGa--------  187 (329)
T KOG0366|consen  127 QQEDGSFSGDI--WGEVDTRFSYCAVACLALLGKL---------DTINVEKAVDFVLSCYNFDGGFGCRPGA--------  187 (329)
T ss_pred             cCcCCcccCCc--ccccchhhhHHHHHHHHHHhhH---------HHhhHHHHHHHHHhhcccCCCcCCCCCc--------
Confidence            56777765211  1112333445555566665442         3456899999999999999999964332        


Q ss_pred             cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCcc-chhhHHHHHH
Q 028222           84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV-CFIYSTWWAI  162 (212)
Q Consensus        84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~-~~~~~T~~al  162 (212)
                          |         ++......++-+|+..++++.-        -.++--.||.++|.+.||-.|+-.. ..+--.++++
T Consensus       188 ----E---------SHagqifcCvgaLai~~~L~~v--------d~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvl  246 (329)
T KOG0366|consen  188 ----E---------SHAGQIFCCVGALAITGKLHLV--------DRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVL  246 (329)
T ss_pred             ----c---------cccceehhhHHHHHHccchhhc--------CHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHH
Confidence                2         2333455678888888765321        1255678999999999998776432 1222378999


Q ss_pred             HHHHHcCcCCCChHHHHHHHHHHHhccc-CCCccccccCcCCCC
Q 028222          163 SGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESYLSCPNK  205 (212)
Q Consensus       163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~-~dGgw~~~~~s~~~~  205 (212)
                      ..|.-.|+..  +..-++-++||++||. +.|||.+.+....+.
T Consensus       247 sSL~iigrl~--wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~  288 (329)
T KOG0366|consen  247 SSLAIIGRLH--WIDREKLTKFILACQDEETGGFSDRPGDEVDI  288 (329)
T ss_pred             hHHHHhhhhh--hccHHHHHHHHHhcCCCCCCCcCCCCCCcccH
Confidence            9999999874  5567788899999998 799999888655443

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=99.17  E-value=2.6e-11  Score=108.91  Aligned_cols=147  Identities=22%  Similarity=0.327  Sum_probs=109.5

Q ss_pred             CCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCc
Q 028222           20 PVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDY   99 (212)
Q Consensus        20 ~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~   99 (212)
                      +.+|||+.++.+|.....--.     ..+...++++++||++.|+++|.|-......                      .
T Consensus       327 s~adct~~~~~~l~a~~~yl~-----~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~v~----------------------~  379 (517)
T COG1657         327 STADCTHRVVLALAALNAYLE-----AYDGQPIERALEWLLSDQEPDGSWYGRWGVC----------------------Y  379 (517)
T ss_pred             CcccCCCccHHHHhhhhhccc-----cccCCcccHHHhhhhhhccccCceeeEEEEE----------------------E
Confidence            568999999999988754210     0014558999999999999999997543211                      1


Q ss_pred             cchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-----------cchhhHHHHHHHHHHHc
Q 028222          100 VECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-----------VCFIYSTWWAISGLVAA  168 (212)
Q Consensus       100 ~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-----------~~~~~~T~~al~aL~~~  168 (212)
                      +..|..++.+|..++..      +++...+++++.||...|.+||+|...+.           .+....|.+|+.++..+
T Consensus       380 iY~~s~a~~~l~~~g~~------~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a  453 (517)
T COG1657         380 IYGTSGALSALALVGET------DENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTA  453 (517)
T ss_pred             EEehhhhhhhhhccCcc------ccchHHHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHh
Confidence            22466677777776532      22356899999999999999999976542           22334678898888888


Q ss_pred             CcCCCChHHHHHHHHHHHhcccCCCccccccCc
Q 028222          169 EKTYSNCLAIRKATDFLLNIQCDDGGWGESYLS  201 (212)
Q Consensus       169 g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s  201 (212)
                      ..+  +.+.++++++.+.+.|.++|+|+....+
T Consensus       454 ~~~--~~~~i~~~~~~~~~~~~~~g~~~~~~~e  484 (517)
T COG1657         454 LEP--NQEAIKPGINLLVSDQEPDGSWREAERE  484 (517)
T ss_pred             ccc--chhhhcccccccccCcCCCCccccceec
Confidence            776  4677999999999999999999876544

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=3.4e-09  Score=89.12  Aligned_cols=165  Identities=14%  Similarity=0.078  Sum_probs=106.4

Q ss_pred             CCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcC
Q 028222            6 SKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLN   85 (212)
Q Consensus         6 ~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~   85 (212)
                      +.||++=..  ...+-.-.|-.++.+|..+.+..      -.+...-+...+||.++|+|||+|..-.            
T Consensus        90 ~~G~f~~~~--g~~~hL~sT~~Ai~~L~~~d~~~------~~~~idr~~l~~fi~~lk~pdGsF~~~~------------  149 (342)
T COG5029          90 PSGGFGGGP--GQDSHLASTVFAIQSLAMLDSLD------VLSRIDRDSLASFISGLKNPDGSFRSDL------------  149 (342)
T ss_pred             CCCCcCCCC--ccchhHHHHHHHHHHHHHhcccc------ccchhhHHHHHHHHHhccCCCCceeccc------------
Confidence            447777321  11233346778888888876531      0122233478999999999999997321            


Q ss_pred             cccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHHHHH
Q 028222           86 PIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWAISG  164 (212)
Q Consensus        86 ~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~al~a  164 (212)
                          ++.     .+.+.-..++..|+.++...        .+..+.+++||++.|+=||+|+.--+ ..+.-.|.+|+.+
T Consensus       150 ----~ge-----vDtr~~Y~al~ilsllg~~~--------~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaa  212 (342)
T COG5029         150 ----EGE-----VDTRFLYIALSILSLLGDLD--------KELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAA  212 (342)
T ss_pred             ----CCc-----chHHHHHHHHHHHHHHhhcc--------hhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHH
Confidence                110     11122334455555555332        24567789999999999999954322 2233457778888


Q ss_pred             HHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCccc
Q 028222          165 LVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM  208 (212)
Q Consensus       165 L~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~  208 (212)
                      |+-++.....+ .+++-+.||..+|.+.||+..++.--.+.+|-
T Consensus       213 lalL~~Ld~ls-~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs  255 (342)
T COG5029         213 LALLGKLDKLS-DVEKLIRWLAERQLSSGGLNGRSNKLVDTCYS  255 (342)
T ss_pred             HHHHhcccccc-hHHHHHHHHHHcccccCCcCCCcccCccchhh
Confidence            88777654222 28999999999999999998877777777663

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=99.05  E-value=9.8e-10  Score=92.57  Aligned_cols=92  Identities=13%  Similarity=0.179  Sum_probs=64.1

Q ss_pred             chHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCcc--------ch-hhHHHHHHHHHHHc--C
Q 028222          101 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV--------CF-IYSTWWAISGLVAA--E  169 (212)
Q Consensus       101 ~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~--------~~-~~~T~~al~aL~~~--g  169 (212)
                      ..|...|..|+++.....   .+.+.+++.||++||++.|.++|||+..+..        .+ ...+.-+|..|..+  +
T Consensus        44 ~aT~~e~~fLa~~y~~t~---d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~  120 (290)
T TIGR02474        44 GATVTEIRYLAQVYQQEK---NAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANG  120 (290)
T ss_pred             ccHHHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhc
Confidence            458888999998865432   3557899999999999999999999754321        01 11234555556432  2


Q ss_pred             cC----------CCChHHHHHHHHHHHhcccCCCcc
Q 028222          170 KT----------YSNCLAIRKATDFLLNIQCDDGGW  195 (212)
Q Consensus       170 ~~----------~~~~~~i~~a~~~Ll~~Q~~dGgw  195 (212)
                      ..          .+...+++||++||++.|-.+|||
T Consensus       121 ~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~  156 (290)
T TIGR02474       121 KDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGK  156 (290)
T ss_pred             cCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence            11          123679999999999999888754

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=98.92  E-value=6.3e-09  Score=86.59  Aligned_cols=108  Identities=21%  Similarity=0.137  Sum_probs=76.0

Q ss_pred             HHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHH
Q 028222           56 ANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKF  135 (212)
Q Consensus        56 v~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~  135 (212)
                      -.-+++.|++||||+.| ...                   .++++=.||.|+..|........- +    ...|.++++|
T Consensus         3 Yqr~L~y~~~DGsfs~f-~~~-------------------~~~s~WLTAfv~k~f~~a~~~i~v-d----~~~i~~a~~w   57 (246)
T PF07678_consen    3 YQRQLSYRRSDGSFSAF-SSD-------------------SPSSTWLTAFVVKVFSQAKKYIFV-D----ENVICRAVKW   57 (246)
T ss_dssp             HHHHHTTB-TTSSBBSS-TTT-------------------SSBBHHHHHHHHHHHHHHTTTS-C-E----HHHHHHHHHH
T ss_pred             hHHHhcCCCCCCCeecc-ccC-------------------CcccHHHHHHHHHHHHHHHHhhcC-C----HHHHHHHHHH
Confidence            34578899999999987 211                   123444699999999987654221 1    4689999999


Q ss_pred             HHhccccCCCcCCCCc----------cchhhHHHHHHHHHHHcCcC-----CCChHHHHHHHHHHHhc
Q 028222          136 TEDSQKLDGSWYGTWG----------VCFIYSTWWAISGLVAAEKT-----YSNCLAIRKATDFLLNI  188 (212)
Q Consensus       136 L~~~Q~~dG~w~g~~~----------~~~~~~T~~al~aL~~~g~~-----~~~~~~i~~a~~~Ll~~  188 (212)
                      |+++|++||+|...-.          .....-|++++.||...+..     +.....++||++||.+.
T Consensus        58 L~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~  125 (246)
T PF07678_consen   58 LISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERH  125 (246)
T ss_dssp             HHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHh
Confidence            9999999999954211          11345689999999998721     12467899999999776

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=5e-09  Score=87.44  Aligned_cols=131  Identities=20%  Similarity=0.201  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222           52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN  131 (212)
Q Consensus        52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r  131 (212)
                      -++++.||+++|+=||||+..+            .+|.         +-..|..+|.+|+..+.+.++.--  -...++|
T Consensus       176 ~ek~~~yI~~~q~YdgGfg~~p------------g~Es---------HgG~TfCAlAsL~L~~~l~~e~l~--~~~~~er  232 (347)
T KOG0367|consen  176 KEKLIGYIRSSQRYDGGFGQHP------------GGES---------HGGATFCALASLALMGKLIPEELS--NTSKVER  232 (347)
T ss_pred             HHHHHHHHHHhhccccccccCC------------CCCC---------CcchhHHHHHHHHHHhhhhhhhhc--cccCHHH
Confidence            4789999999999999999532            2333         334699999999988766332100  0123799


Q ss_pred             HHHHHHhccccCCCcCCCCccchhhHHHHHH---HHHHHcCcCCCChHHHHHHHHHHHhcccCC-CccccccCcCCCCcc
Q 028222          132 GVKFTEDSQKLDGSWYGTWGVCFIYSTWWAI---SGLVAAEKTYSNCLAIRKATDFLLNIQCDD-GGWGESYLSCPNKLH  207 (212)
Q Consensus       132 a~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al---~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~d-Ggw~~~~~s~~~~~y  207 (212)
                      -++|++.+|..+|||-|+-..  ...|.+|.   ..|.-++...  -..-.+-.+||+++|..- |||...|.+.++...
T Consensus       233 lirWli~RQ~~sgGfqGR~NK--p~DTCYaFWigasLklL~~~~--~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~H  308 (347)
T KOG0367|consen  233 LIRWLIQRQVSSGGFQGRTNK--PVDTCYAFWIGASLKLLDADW--LIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLH  308 (347)
T ss_pred             HHHHHHHHhhccCCcCCCCCC--CchhHHHHHHHHHHHHccchH--hhhHHHHHHHHHHhhhhhcCcccCCCccCchHHH
Confidence            999999999999999887432  23444444   4444444432  223345669999999875 999999988877654


Q ss_pred             cc
Q 028222          208 MN  209 (212)
Q Consensus       208 ~~  209 (212)
                      .|
T Consensus       309 sy  310 (347)
T KOG0367|consen  309 SY  310 (347)
T ss_pred             HH
Confidence            43

>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=1.7e-07  Score=78.35  Aligned_cols=80  Identities=19%  Similarity=0.195  Sum_probs=60.9

Q ss_pred             HHHHHHHHHhccccCCCcCCCC-ccchhhHHHHHHHHHHHcCcC--C--CChHHHHHHHHHHHhcccCCCccccccCcCC
Q 028222          129 ITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKT--Y--SNCLAIRKATDFLLNIQCDDGGWGESYLSCP  203 (212)
Q Consensus       129 i~ra~~~L~~~Q~~dG~w~g~~-~~~~~~~T~~al~aL~~~g~~--~--~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~  203 (212)
                      .++++.|+++.|+=||+|...- +.++.-.|.+|+.+|.-.|..  .  .+...+++-++|++..|..+|||...+.--.
T Consensus       176 ~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~  255 (347)
T KOG0367|consen  176 KEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPV  255 (347)
T ss_pred             HHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCc
Confidence            5788999999999999995432 233444577888888776654  1  1234589999999999999999998887777


Q ss_pred             CCccc
Q 028222          204 NKLHM  208 (212)
Q Consensus       204 ~~~y~  208 (212)
                      +++|-
T Consensus       256 DTCYa  260 (347)
T KOG0367|consen  256 DTCYA  260 (347)
T ss_pred             hhHHH
Confidence            77764

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4

Probab=98.59  E-value=3.1e-07  Score=77.58  Aligned_cols=97  Identities=16%  Similarity=0.243  Sum_probs=58.1

Q ss_pred             chHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc--------cchhhH-HHHHHHHHHH--cC
Q 028222          101 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG--------VCFIYS-TWWAISGLVA--AE  169 (212)
Q Consensus       101 ~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~--------~~~~~~-T~~al~aL~~--~g  169 (212)
                      +.|...|..|+++....   ..+++.+++.||++||++.|.++|||+..|-        ..+..+ ..-+|.-|..  .+
T Consensus        39 ~aT~~ei~fLa~~y~~t---~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~  115 (289)
T PF09492_consen   39 DATTTEIRFLARVYQAT---KDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEG  115 (289)
T ss_dssp             GTTHHHHHHHHHHHHHC---G-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhh
Confidence            46888999999987653   3467889999999999999999999986541        111111 2223333332  23


Q ss_pred             cCC----------CChHHHHHHHHHHHhcccC-CC---ccccccC
Q 028222          170 KTY----------SNCLAIRKATDFLLNIQCD-DG---GWGESYL  200 (212)
Q Consensus       170 ~~~----------~~~~~i~~a~~~Ll~~Q~~-dG---gw~~~~~  200 (212)
                      ..+          +...+++|++++||++|.. +|   +|.....
T Consensus       116 ~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD  160 (289)
T PF09492_consen  116 KGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHD  160 (289)
T ss_dssp             -TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-
T ss_pred             cCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccC
Confidence            221          2367899999999999973 44   6775443

2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.

>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals

Probab=98.58  E-value=7.7e-07  Score=76.34  Aligned_cols=92  Identities=26%  Similarity=0.253  Sum_probs=70.4

Q ss_pred             ccchHHHHHHHHHHHHhhCCc--cchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcCcCCCC-h
Q 028222           99 YVECTASALKAMTLFQKLYPK--HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSN-C  175 (212)
Q Consensus        99 ~~~~Ta~al~aL~~~~~~~~~--~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g~~~~~-~  175 (212)
                      +||++|+|++||.........  ....++..+|++.++.|++.|.+||.|+      ..|.|++|++||...+..+.. .
T Consensus       185 sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G------NiySTglAmQAL~~~~~~~~~~~  258 (326)
T PF01122_consen  185 SVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG------NIYSTGLAMQALSVSPSPPSESE  258 (326)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS------STTTHHHHHHHHTT-SS-SSHHH
T ss_pred             CccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc------chhhHHHHHHHHhcCCCCCcchh
Confidence            578899999999988654322  2336788899999999999999999983      378999999999999887522 3


Q ss_pred             HHHHHHHHHHHhcccCCCcccc
Q 028222          176 LAIRKATDFLLNIQCDDGGWGE  197 (212)
Q Consensus       176 ~~i~~a~~~Ll~~Q~~dGgw~~  197 (212)
                      ....+++++|++.. .+|.|..
T Consensus       259 w~C~k~~~~ll~~i-~~G~F~n  279 (326)
T PF01122_consen  259 WNCQKALDALLKEI-SQGAFQN  279 (326)
T ss_dssp             HHHHHHHHHHHHHH-TTTTT-S
T ss_pred             hHHHHHHHHHHHHh-hcCCCCC
Confidence            67899999999954 6999875

Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=98.32  E-value=2.2e-06  Score=69.00  Aligned_cols=55  Identities=20%  Similarity=0.280  Sum_probs=39.7

Q ss_pred             CCCCCCccccccCCCCCCCC-ccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHh-cccCCCcee
Q 028222            3 RHISKGGWTFSDKDHGLPVS-DCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGIT   70 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~-d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~   70 (212)
                      |+|++||++|-.   ..||+ .+|=-++..+..+..++          ...++.++||.+ +|.+-+|+.
T Consensus        18 RrhedGGy~f~~---~Lpdti~~TyYAi~i~s~lg~ev----------Pr~EktiefL~d~~qt~~~~~a   74 (274)
T COG1689          18 RRHEDGGYCFVS---QLPDTINDTYYAIKIYSLLGHEV----------PRKEKTIEFLYDQMQTAGVGVA   74 (274)
T ss_pred             hhcCCCCeEEec---cCcchhhhhhhhhhhhhhcCCcC----------chHHHHHHHHHHHHHHhhhHHH
Confidence            899999999843   36665 67766776666664433          336899999997 477777775

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=98.31  E-value=1.7e-06  Score=52.72  Aligned_cols=41  Identities=22%  Similarity=0.251  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhccccCCCcCCCCcc-chhhHHHHHHHHHHHcC
Q 028222          129 ITNGVKFTEDSQKLDGSWYGTWGV-CFIYSTWWAISGLVAAE  169 (212)
Q Consensus       129 i~ra~~~L~~~Q~~dG~w~g~~~~-~~~~~T~~al~aL~~~g  169 (212)
                      ++++++||++.|++||||.+.++. .+.+.|.+++.+|..+|
T Consensus         3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg   44 (44)
T PF00432_consen    3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG   44 (44)
T ss_dssp             HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence            688999999999999999887654 46788999999998764

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=1.7e-05  Score=67.94  Aligned_cols=156  Identities=15%  Similarity=0.189  Sum_probs=97.5

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL   83 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~   83 (212)
                      |.+.||++=  -+.-+|-.--|=.++.||..+.++.. +     +.-.-++..+||.++.++||||.-...+        
T Consensus       133 ~~PeGGfgG--GPGQl~HLA~TYAAVnaL~~~~~e~A-~-----~~InR~~l~~fL~slK~~dGgFrmh~~G--------  196 (423)
T KOG0365|consen  133 QGPEGGFGG--GPGQLPHLAPTYAAVNALCLCGSEDA-Y-----SSINREKLYQFLFSLKDPDGGFRMHVEG--------  196 (423)
T ss_pred             CCCCCCCCC--CCccchhhhHHHHHHHHHHhcCcHHH-H-----HHhhHHHHHHHHHHhcCCCCCeEeecCC--------
Confidence            457788653  33445555567777888888765421 1     1122467899999999999999843221        


Q ss_pred             cCcccccchhhcccCccch-HHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccc-hhhHHHHH
Q 028222           84 LNPIEFLDEVIIEHDYVEC-TASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVC-FIYSTWWA  161 (212)
Q Consensus        84 l~~~e~~~~~~~d~~~~~~-Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~-~~~~T~~a  161 (212)
                                     .+|+ .+.+..+.+.+-.. +.      .+-.+-..+||++.|.=+|||+|.-+.. +---|.++
T Consensus       197 ---------------E~DvRs~YcA~svasllni-~~------deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCa  254 (423)
T KOG0365|consen  197 ---------------EVDVRSAYCALSVASLLNI-PM------DELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCA  254 (423)
T ss_pred             ---------------cchHHHHHHHHHHHHHHCC-Cc------HHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHH
Confidence                           1111 22222222222111 21      1344556999999999999997754321 11126678


Q ss_pred             HHHHHHcCcCCCChHHHHHHHHHHHhccc-CCCcccccc
Q 028222          162 ISGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESY  199 (212)
Q Consensus       162 l~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~-~dGgw~~~~  199 (212)
                      +.+|.-++..  +.-.+++-++|..++|. ..|||....
T Consensus       255 lAalalLn~~--d~ln~~~Ll~W~~~RQm~~E~GFqGRt  291 (423)
T KOG0365|consen  255 LAALALLNEM--DQLNLEKLLEWAVRRQMRFEGGFQGRT  291 (423)
T ss_pred             HHHHHHHhhh--hhhCHHHHHHHHHHhhhhhhccccccc
Confidence            8888877665  35678899999999998 689986543

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=98.09  E-value=6.1e-06  Score=50.19  Aligned_cols=41  Identities=27%  Similarity=0.328  Sum_probs=30.7

Q ss_pred             HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHH
Q 028222           52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLF  113 (212)
Q Consensus        52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~  113 (212)
                      ++++++||+++|++||||+..+..                     ++++..|..++.+|..+
T Consensus         3 ~~~~~~~l~~~Q~~dGGf~~~~~~---------------------~~d~~~t~~~~~~L~ll   43 (44)
T PF00432_consen    3 VEKLIRFLLSCQNPDGGFGGRPGG---------------------ESDTCYTYCALAALSLL   43 (44)
T ss_dssp             HHHHHHHHHHTBBTTSSBBSSTTS---------------------SBBHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCC---------------------CCChHHHHHHHHHHHHc
Confidence            689999999999999999954321                     23444577788887754

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals

Probab=97.45  E-value=0.00045  Score=59.48  Aligned_cols=109  Identities=11%  Similarity=0.035  Sum_probs=71.8

Q ss_pred             CCCCccHHHHHHHHHHhhcCCCCC-cCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhccc
Q 028222           19 LPVSDCSSESFVCCLHLSTMPPEI-VGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEH   97 (212)
Q Consensus        19 ~~~~d~Ta~~l~al~~~~~~~~~~-~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~   97 (212)
                      ..++|+.|.+.+||.=+.+.-... .-......+|++.++.|++.|.+||.||.                          
T Consensus       183 ~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~GN--------------------------  236 (326)
T PF01122_consen  183 QFSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFGN--------------------------  236 (326)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BSS--------------------------
T ss_pred             CCCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCcccc--------------------------
Confidence            456899999999998876532110 00112346788888899999999999982                          


Q ss_pred             CccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHH
Q 028222           98 DYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVA  167 (212)
Q Consensus        98 ~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~  167 (212)
                        +..|+.|+++|...... +    .+-.-.+.|++++|+.. .++|.|.      ....++.++-+|.-
T Consensus       237 --iySTglAmQAL~~~~~~-~----~~~~w~C~k~~~~ll~~-i~~G~F~------nP~a~aQiLPaL~g  292 (326)
T PF01122_consen  237 --IYSTGLAMQALSVSPSP-P----SESEWNCQKALDALLKE-ISQGAFQ------NPMAIAQILPALNG  292 (326)
T ss_dssp             --TTTHHHHHHHHTT-SS--S----SHHHHHHHHHHHHHHHH-HTTTTT-------SHHHHHHHHHHHTT
T ss_pred             --hhhHHHHHHHHhcCCCC-C----cchhhHHHHHHHHHHHH-hhcCCCC------CHHHHHHHHHHHcC
Confidence              22599999999877532 1    11235789999999995 4699882      23466777766643

Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=97.31  E-value=0.00062  Score=55.11  Aligned_cols=75  Identities=20%  Similarity=0.177  Sum_probs=55.4

Q ss_pred             CCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceee-cCCCCChhhhhhc
Q 028222            6 SKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITG-WEPAGAPSWIELL   84 (212)
Q Consensus         6 ~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~-~~~~~~~~~~~~l   84 (212)
                      +.|||.+.+ ...-|..++|=.++..|-.+++.           -.+.+.++||.+.||+||||.. +..          
T Consensus       196 ~~Ggf~~~P-~syPPYiE~t~ya~r~lelL~~k-----------~~i~~~~rFI~slqN~nGGFRRS~~~----------  253 (274)
T COG1689         196 DWGGFTEVP-NSYPPYIEPTFYALRGLELLGGK-----------YCISDHIRFIRSLQNQNGGFRRSYEL----------  253 (274)
T ss_pred             cCCCcccCC-CCCCCccchHHHHHhHHHHHccC-----------cCchHHHHHHHHhhcCCCCeeeeEec----------
Confidence            458888875 55568899999999999888652           2357788999999999999973 211          


Q ss_pred             CcccccchhhcccCccchHHHHHHHHHHH
Q 028222           85 NPIEFLDEVIIEHDYVECTASALKAMTLF  113 (212)
Q Consensus        85 ~~~e~~~~~~~d~~~~~~Ta~al~aL~~~  113 (212)
                                 ..+..+.|..||..|..+
T Consensus       254 -----------GISt~e~tYrAl~~L~~l  271 (274)
T COG1689         254 -----------GISTFENTYRALASLASL  271 (274)
T ss_pred             -----------cccchHHHHHHHHHHHHH
Confidence                       124455688888887764

>PLN02592 ent-copalyl diphosphate synthase

Probab=96.42  E-value=0.0044  Score=59.48  Aligned_cols=61  Identities=15%  Similarity=0.159  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222           52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN  131 (212)
Q Consensus        52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r  131 (212)
                      --.+++||+..|.+||||+....               |.    ....+-.|..||.||...+..         ...|.|
T Consensus       117 FP~~~~wIl~nQ~~DGsWG~~~~---------------~~----~~D~ll~TLAcvlAL~~w~~~---------~~~i~r  168 (800)
T PLN02592        117 FPSSLQWIANNQLSDGSWGDAYL---------------FS----AHDRLINTLACVVALKSWNLH---------PEKCEK  168 (800)
T ss_pred             CHHHHHHHHHccCCCCCCCCCCC---------------cc----hHHHHHhHHHHHHHHHHhhcc---------HHHHHH
Confidence            45789999999999999984210               00    001223599999999887532         257899


Q ss_pred             HHHHHHhcc
Q 028222          132 GVKFTEDSQ  140 (212)
Q Consensus       132 a~~~L~~~Q  140 (212)
                      |+.||.+.-
T Consensus       169 Gl~fi~~nl  177 (800)
T PLN02592        169 GMSFFRENI  177 (800)
T ss_pred             HHHHHHHHH
Confidence            999998654

>TIGR01577 oligosac_amyl oligosaccharide amylase

Probab=96.32  E-value=0.057  Score=50.79  Aligned_cols=125  Identities=17%  Similarity=0.092  Sum_probs=76.1

Q ss_pred             CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeec-CCCCChhhhhhcCcccccchhhc
Q 028222           17 HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGW-EPAGAPSWIELLNPIEFLDEVII   95 (212)
Q Consensus        17 ~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~-~~~~~~~~~~~l~~~e~~~~~~~   95 (212)
                      +++.-+-|++.+++||++++.           .+..++.++||.+.|.+||+|... ..+....      |        .
T Consensus       292 Y~y~W~RD~~~~a~Al~~~G~-----------~~~a~~~l~~l~~~q~~~G~~~~~~~~dG~~~------~--------~  346 (616)
T TIGR01577       292 YAYCWGRDASYIATALDRAGY-----------HDRVDRFFRWAMQTQSRDGSWQQRYYLNGRLA------P--------L  346 (616)
T ss_pred             CceeccccHHHHHHHHHHCCC-----------HHHHHHHHHHHHHhhCcCCCcceEEecCCCCC------C--------C
Confidence            445556799999999999743           477899999999999999998532 1110000      0        0


Q ss_pred             c-cCccchHHHHHHHHHHHHhhCCc-cchhHHHHHHHHHHHHHHhcccc------CCCcCCCCccchhhHHHHHHHHHHH
Q 028222           96 E-HDYVECTASALKAMTLFQKLYPK-HKKNEVNNFITNGVKFTEDSQKL------DGSWYGTWGVCFIYSTWWAISGLVA  167 (212)
Q Consensus        96 d-~~~~~~Ta~al~aL~~~~~~~~~-~~~~~i~~~i~ra~~~L~~~Q~~------dG~w~g~~~~~~~~~T~~al~aL~~  167 (212)
                      + ..-.|.++.+|.++..+.....+ ...+++-+.++++++|+.+...+      .|-|..+.+ .+++..+++..||.+
T Consensus       347 ~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~~l~~~~~~lWEer~G-~~~~t~a~~~aAL~~  425 (616)
T TIGR01577       347 QWGLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDPETPLPCRDLWEEREG-VFTYTASAVYGGLDA  425 (616)
T ss_pred             CCCccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccceecCC-ccCccHHHHHHHHHH
Confidence            1 12234588888877655332111 11234557899999999996533      334533222 244555666666654

The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.

>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase

Probab=95.96  E-value=0.07  Score=50.46  Aligned_cols=119  Identities=14%  Similarity=0.111  Sum_probs=74.9

Q ss_pred             CCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeec-CCCCChhhhhhcCcccccchhhccc
Q 028222           19 LPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGW-EPAGAPSWIELLNPIEFLDEVIIEH   97 (212)
Q Consensus        19 ~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~-~~~~~~~~~~~l~~~e~~~~~~~d~   97 (212)
                      +.-+-|.+.++.||..++.           .+..++..+||.+.|.++|.|... ..+....|.               .
T Consensus       294 yvW~RD~a~~a~AL~~~G~-----------~~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~---------------~  347 (648)
T TIGR01535       294 LVWPRDLYQVANAFLAAGD-----------VDSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWT---------------G  347 (648)
T ss_pred             EEehhhHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHhccCCCcCceeccCCCCCCC---------------C
Confidence            4456699999999999853           467899999999999999998522 111111110               0


Q ss_pred             CccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc--CCCcCCCCccchhhHHHHHHHHHHHc
Q 028222           98 DYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL--DGSWYGTWGVCFIYSTWWAISGLVAA  168 (212)
Q Consensus        98 ~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~--dG~w~g~~~~~~~~~T~~al~aL~~~  168 (212)
                      --.|.|+.+|.++..+....    ...+...|+++++||.+.-..  .|-|..+.+. ..+..+.++.||.++
T Consensus       348 iQlD~~g~~i~~~~~l~~~~----~~~~~~~vk~aadfl~~~~p~p~~d~WEer~g~-~~~T~a~v~aaL~~A  415 (648)
T TIGR01535       348 IQLDETAFPILLAYRLHRYD----HAFYDKMLKPAADFIVKNGPKTGQERWEEIGGY-SPSTLAAEIAGLTAA  415 (648)
T ss_pred             ccccHHHHHHHHHHHHHHcC----cHHHHHHHHHHHHHHHHcCCCCCCCcccccCCc-CchhHHHHHHHHHHH
Confidence            12457999888776654321    133456799999999997422  2444322222 234455555666553

Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.

>PLN02592 ent-copalyl diphosphate synthase

Probab=95.90  E-value=0.016  Score=55.72  Aligned_cols=59  Identities=15%  Similarity=0.152  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhccccCCCcCCCCc---cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhc
Q 028222          127 NFITNGVKFTEDSQKLDGSWYGTWG---VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNI  188 (212)
Q Consensus       127 ~~i~ra~~~L~~~Q~~dG~w~g~~~---~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~  188 (212)
                      +..-..++||++.|.+||||+..-.   ....-.|..|+.||...++.   ...|+|++.||.+.
T Consensus       115 p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~i~rGl~fi~~n  176 (800)
T PLN02592        115 PQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH---PEKCEKGMSFFREN  176 (800)
T ss_pred             CCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc---HHHHHHHHHHHHHH
Confidence            3456789999999999999965311   12246789999999887664   46789999999763

>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases []

Probab=95.83  E-value=0.14  Score=44.37  Aligned_cols=101  Identities=15%  Similarity=0.023  Sum_probs=61.2

Q ss_pred             cHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHH--HHHHH-HHhhCCccchhH
Q 028222           48 EPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASAL--KAMTL-FQKLYPKHKKNE  124 (212)
Q Consensus        48 ~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al--~aL~~-~~~~~~~~~~~~  124 (212)
                      ..+.+++.++.|...|++||.|........                  ..+..++++.++  .+|.. +....  .+.++
T Consensus       213 ~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~------------------~~~~~etSatA~~a~~l~~gi~~g~--~d~~~  272 (336)
T PF07470_consen  213 LLEIAKKLADALARYQDEDGLWYQDLDDPD------------------PGNYRETSATAMFAYGLLRGIRLGL--LDPEE  272 (336)
T ss_dssp             HHHHHHHHHHHHHTTSTTTSBEBSBTTTTT------------------TTS-BEHHHHHHHHHHHHHHHHTTS--STHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcceecCCCC------------------CCCcccHHHHHHHHHHHHHHHHcCC--CccHH
Confidence            456788889999999999999974321100                  011234444444  44443 22211  12466


Q ss_pred             HHHHHHHHHHHHHhc-cccCCC--cCCCC---c----------cchhhHHHHHHHHHHHc
Q 028222          125 VNNFITNGVKFTEDS-QKLDGS--WYGTW---G----------VCFIYSTWWAISGLVAA  168 (212)
Q Consensus       125 i~~~i~ra~~~L~~~-Q~~dG~--w~g~~---~----------~~~~~~T~~al~aL~~~  168 (212)
                      +.++++|+++.|++. -++||.  +.+.-   .          ....++.++.|+|+.++
T Consensus       273 y~~~a~~a~~~l~~~~~~~dG~~~~~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~  332 (336)
T PF07470_consen  273 YRPAAEKALEALLSNAIDPDGKLGLKGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAEY  332 (336)
T ss_dssp             HHHHHHHHHHHHHHCEB-TTSSSBBTCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccCCCCCeEEeeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence            789999999999999 888887  43211   0          11247788888887764

; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....

>PLN02279 ent-kaur-16-ene synthase

Probab=95.82  E-value=0.011  Score=56.79  Aligned_cols=60  Identities=22%  Similarity=0.295  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222           52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN  131 (212)
Q Consensus        52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r  131 (212)
                      --.+++||+..|.+||+|+.....  .           |    ...+.+-.|..||.||.+.+.. +        ..++|
T Consensus        75 Fp~~~~wil~nQ~~dGsWg~~~~~--~-----------~----~~~D~ll~TlAcvlAL~~w~~~-~--------~~~~~  128 (784)
T PLN02279         75 FPECVKWLLENQLEDGSWGLPHDH--P-----------L----LVKDALSSTLASILALKKWGVG-E--------EQINK  128 (784)
T ss_pred             ChHHHHHHHhcCCCCCCCCCCCCC--c-----------c----hhHHhhHHHHHHHHHHHHHhcC-c--------ccchh
Confidence            457889999999999999842110  0           0    0011233599999999998653 2        23466


Q ss_pred             HHHHHH
Q 028222          132 GVKFTE  137 (212)
Q Consensus       132 a~~~L~  137 (212)
                      ++.|+.
T Consensus       129 gl~fi~  134 (784)
T PLN02279        129 GLQFIE  134 (784)
T ss_pred             hHHHHH
Confidence            666665

>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.088  Score=53.78  Aligned_cols=60  Identities=12%  Similarity=0.137  Sum_probs=46.3

Q ss_pred             CCCCccc-cccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceee
Q 028222            5 ISKGGWT-FSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITG   71 (212)
Q Consensus         5 ~~~Ggw~-~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~   71 (212)
                      +.+|.+- |-.. .....+..||.+|+.+....+ |     ..+++..+.++++||..+|.++|.|..
T Consensus       985 ~~DgSySaFg~~-~~~~stWLtafvlr~f~~a~~-~-----i~id~~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen  985 RADGSYSAFGSS-DRSGSTWLTAFVLRVFSQAKE-Y-----IFIDPNVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred             ccCCChhhhcCC-CCcccHHHHHHHHHHhhhccC-c-----eEecHHHHHHHHHHHHHhhccCceEec
Confidence            4556655 5432 236678899999999998743 2     357789999999999999999999963

>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases []

Probab=95.49  E-value=0.15  Score=44.03  Aligned_cols=180  Identities=17%  Similarity=0.100  Sum_probs=96.8

Q ss_pred             CCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCC-CcHHHHHHHHHHHHhcccC-CCceeecC-CCCChhhhh
Q 028222            6 SKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEK-MEPERFYDAANFMLYIQSK-TGGITGWE-PAGAPSWIE   82 (212)
Q Consensus         6 ~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~-~~~~~i~~av~~Ll~~Q~~-dGgw~~~~-~~~~~~~~~   82 (212)
                      +.|++-.........-+|..-.++..|..+.+..    |++ ..+.+++.+..+.....++ +|-|.... ......+  
T Consensus       107 ~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~t----gd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~--  180 (336)
T PF07470_consen  107 SDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLT----GDPKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADW--  180 (336)
T ss_dssp             CTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHH----TGHHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTT--
T ss_pred             CCCccccCCCCCCceeeccccccHHHHHHHHHHH----CCcHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCc--
Confidence            4676654333333444666656777777655422    222 2244455555555555555 56553111 0000000  


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCc--cchhHHHHHHHHHHHHHHhccccCCCcCCCCc------cch
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPK--HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG------VCF  154 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~--~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~------~~~  154 (212)
                              .+..+    .-..+-++.+|.......|+  ...+++...+++.++.|...|.+||.|+-...      ...
T Consensus       181 --------s~~~W----sRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~e  248 (336)
T PF07470_consen  181 --------SDSFW----SRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRE  248 (336)
T ss_dssp             --------ST--B----HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BE
T ss_pred             --------ccccC----cchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCccc
Confidence                    00000    01134456666654433222  12355677888999999999999999953221      123


Q ss_pred             hhHHHHHHHHHHH---cCcCC--CChHHHHHHHHHHHhc-ccCCCc--cccccCcCC
Q 028222          155 IYSTWWAISGLVA---AEKTY--SNCLAIRKATDFLLNI-QCDDGG--WGESYLSCP  203 (212)
Q Consensus       155 ~~~T~~al~aL~~---~g~~~--~~~~~i~~a~~~Ll~~-Q~~dGg--w~~~~~s~~  203 (212)
                      +.+|+++..+|..   .|...  ...+.++|+++.|++. -++||.  +...+...+
T Consensus       249 tSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~~~~~~~~~~~~  305 (336)
T PF07470_consen  249 TSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGKLGLKGVCGGTP  305 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSSSBBTCEBETTT
T ss_pred             HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCCeEEeeeEeecC
Confidence            4577777777743   45541  2367899999999999 778887  554443333

; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....

>COG2373 Large extracellular alpha-helical protein [General function prediction only]

Probab=95.12  E-value=0.21  Score=51.79  Aligned_cols=101  Identities=12%  Similarity=0.078  Sum_probs=66.6

Q ss_pred             CCCCccHHHHHHHHHHhhcCCCCC-cCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhccc
Q 028222           19 LPVSDCSSESFVCCLHLSTMPPEI-VGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEH   97 (212)
Q Consensus        19 ~~~~d~Ta~~l~al~~~~~~~~~~-~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~   97 (212)
                      |.+++=|+..++.|+.+.+..... ...+.....++.++.-|+++|..+|+|+.|.+...                    
T Consensus      1167 ygc~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F~~W~~~~~-------------------- 1226 (1621)
T COG2373        1167 YGCAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAFGLWGGNGS-------------------- 1226 (1621)
T ss_pred             ccchhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCceeecCCCCC--------------------
Confidence            557778888888888876654322 34455678999999999999999999997654211                    


Q ss_pred             CccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222           98 DYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD  143 (212)
Q Consensus        98 ~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d  143 (212)
                      +++-.|+.++.+|....+.  .+..+  .+.+.++++++++.-...
T Consensus      1227 ~d~~ltaYa~~Fl~~A~e~--g~~vp--~~~~~~~~~~~~~~l~n~ 1268 (1621)
T COG2373        1227 GDPWLTAYAVDFLLRAREQ--GYSVP--SDALNQMLERLLEYLQNP 1268 (1621)
T ss_pred             cchhhhHHHHHHHhhhhhc--CcCCC--HHHHHHHHHHHHHHHhCc
Confidence            1223588888888877433  11111  356777766555543333

>PLN02279 ent-kaur-16-ene synthase

Probab=94.32  E-value=0.066  Score=51.64  Aligned_cols=58  Identities=24%  Similarity=0.149  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhccccCCCcCCCCc-----cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHh
Q 028222          127 NFITNGVKFTEDSQKLDGSWYGTWG-----VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLN  187 (212)
Q Consensus       127 ~~i~ra~~~L~~~Q~~dG~w~g~~~-----~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~  187 (212)
                      +..-..++||++.|.+||+|+..-.     ....-+|..++.||...++.+   ..+++++.||.+
T Consensus        73 p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~~---~~~~~gl~fi~~  135 (784)
T PLN02279         73 PLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVGE---EQINKGLQFIEL  135 (784)
T ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcCc---ccchhhHHHHHH
Confidence            3456789999999999999953211     122457999999999887653   457888888864

>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid

Probab=94.09  E-value=3  Score=36.37  Aligned_cols=119  Identities=13%  Similarity=-0.010  Sum_probs=73.6

Q ss_pred             CCCccccccCCCCCC-----CCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhc-ccCC-CceeecCCCCCh
Q 028222            6 SKGGWTFSDKDHGLP-----VSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYI-QSKT-GGITGWEPAGAP   78 (212)
Q Consensus         6 ~~Ggw~~~~~~~~~~-----~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~-Q~~d-Ggw~~~~~~~~~   78 (212)
                      +.|||.+.-...+.|     .+-.+|..|.++..+...-    +++...+..+++++||.+. ..++ |||........ 
T Consensus        31 ~~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~----~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g-  105 (384)
T cd00249          31 EAGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLG----WRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDG-  105 (384)
T ss_pred             CCCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHhc----CChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCC-
Confidence            457777532222232     2446699999998865421    3455677889999999985 4456 99963211000 


Q ss_pred             hhhhhcCcccccchhhcc-cCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccc-cCCCc
Q 028222           79 SWIELLNPIEFLDEVIIE-HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQK-LDGSW  146 (212)
Q Consensus        79 ~~~~~l~~~e~~~~~~~d-~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~-~dG~w  146 (212)
                                    ...+ ..+...-+.+|.+|+.+....   ..++..+.+++.+++|.+... ++|++
T Consensus       106 --------------~~~~~~~~l~~~a~~l~ala~~~~at---~d~~~l~~A~~~~~~l~~~~~~~~g~~  158 (384)
T cd00249         106 --------------RPVDATKDLYSHAFALLAAAQAAKVG---GDPEARALAEETIDLLERRFWEDHPGA  158 (384)
T ss_pred             --------------CCcccccchHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHhccCCCcc
Confidence                          0001 113445677888988876543   235566788999999998885 45654

Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.

>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function

Probab=93.37  E-value=0.65  Score=42.85  Aligned_cols=120  Identities=9%  Similarity=0.063  Sum_probs=71.9

Q ss_pred             CCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcC
Q 028222            6 SKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLN   85 (212)
Q Consensus         6 ~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~   85 (212)
                      +.|||.=......+.+ .+..+-|.++..+...    .+++.-.+.+++.|+.|+++|.+||-.+.+.....      ..
T Consensus        44 ~~g~we~~~~~~~~~~-~~~g~wl~a~a~~~~~----~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~------~~  112 (520)
T PF07944_consen   44 AYGGWEGEFPGWWFRG-HDVGKWLEAAAYAYAY----TGDPELKAKADEIVDELAAAQQPDGYLGTYPEERN------FN  112 (520)
T ss_pred             cCCCCccCCCCCccCC-CcHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhccCCceecccccccc------cc
Confidence            5688872222333333 3778889888775331    23455578899999999999999998876643220      00


Q ss_pred             cccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHH---Hhcccc
Q 028222           86 PIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFT---EDSQKL  142 (212)
Q Consensus        86 ~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L---~~~Q~~  142 (212)
                      +...+.+   +.-...+-...+.+|..+....   ..+++.+.+.|..+|+   .+...+
T Consensus       113 ~~~~w~~---~~he~Y~~~~ll~gl~~~y~~t---G~~~~L~v~~k~ad~~~~~~~~~~~  166 (520)
T PF07944_consen  113 PDDRWAP---DMHELYCLGKLLEGLIDYYEAT---GNERALDVATKLADWVYRRLSRLGP  166 (520)
T ss_pred             cccCCCC---CccceehHhHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHHHhccCCH
Confidence            0000110   1111334556788887665432   2356778999999999   555444

One member of this family is annotated as a possible arabinosidase, but no references were found to back this.

>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]

Probab=93.33  E-value=2.9  Score=36.41  Aligned_cols=137  Identities=18%  Similarity=0.176  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHhcccCC-Ccee-ecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCc-c-chhH
Q 028222           49 PERFYDAANFMLYIQSKT-GGIT-GWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPK-H-KKNE  124 (212)
Q Consensus        49 ~~~i~~av~~Ll~~Q~~d-Ggw~-~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~-~-~~~~  124 (212)
                      ++.+..-..-..-.|.|+ |=|- .|....+.+|.+..+....|    +..    ..+-+.++|..+-+..|. + .+.+
T Consensus       158 d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~f----WaR----g~gW~~mal~d~le~lp~~~~~r~~  229 (357)
T COG4225         158 DEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAF----WAR----GNGWYAMALADLLELLPEDHPDRRE  229 (357)
T ss_pred             HHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccccCCCcee----eec----ccchHHHHHHHHHHhCCCCCchHHH
Confidence            444444444445556676 5443 23344444554432211111    111    133445555554444332 2 3456


Q ss_pred             HHHHHHHHHHHHHhccccCCCcCCCCcc--c----hhhHHHHHHHHHHH---cCcCC-CChHHHHHHHHHHHhcccCCC
Q 028222          125 VNNFITNGVKFTEDSQKLDGSWYGTWGV--C----FIYSTWWAISGLVA---AEKTY-SNCLAIRKATDFLLNIQCDDG  193 (212)
Q Consensus       125 i~~~i~ra~~~L~~~Q~~dG~w~g~~~~--~----~~~~T~~al~aL~~---~g~~~-~~~~~i~~a~~~Ll~~Q~~dG  193 (212)
                      +...++.-++=|++.|+++|-|......  .    .+.+|+.-..||..   .|... +..+.++||.+-|+.+-.++|
T Consensus       230 l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~~g  308 (357)
T COG4225         230 LLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDEEG  308 (357)
T ss_pred             HHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccccc
Confidence            7788899999999999999999643221  1    23456666667766   66643 346799999999999988766

>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid

Probab=92.67  E-value=1.7  Score=37.84  Aligned_cols=129  Identities=17%  Similarity=0.128  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHhc--ccCCCceeecCCCCChhhhhhcCcccccchhhcc-cCccchHHHHHHHHHHHHhhCCccchhHHH
Q 028222           50 ERFYDAANFMLYI--QSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIE-HDYVECTASALKAMTLFQKLYPKHKKNEVN  126 (212)
Q Consensus        50 ~~i~~av~~Ll~~--Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d-~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~  126 (212)
                      ..++.++.|....  ...+|||...-... .              .+.+ .-.+..++..|.+|+.+.....   .++..
T Consensus        14 ~~~~~~~~fw~~~~~d~~~gg~~~~l~~~-g--------------~~~~~~k~~~~~ar~i~~~a~a~~~~~---~~~~l   75 (384)
T cd00249          14 WLLEDLLPFWLEAGLDREAGGFFECLDRD-G--------------QPFDTDRRLWLQARQVYCFAVAYLLGW---RPEWL   75 (384)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCeEEEECCC-C--------------CCCCCCCeEEEecHHHHHHHHHHHhcC---ChhHH
Confidence            4467888888874  33479987421111 0              0011 2245678899999998765431   24456


Q ss_pred             HHHHHHHHHHHhccc-cC-CCcCCCCc--------cchhhHHHHHHHHHHHcCcC---CCChHHHHHHHHHHHhccc-CC
Q 028222          127 NFITNGVKFTEDSQK-LD-GSWYGTWG--------VCFIYSTWWAISGLVAAEKT---YSNCLAIRKATDFLLNIQC-DD  192 (212)
Q Consensus       127 ~~i~ra~~~L~~~Q~-~d-G~w~g~~~--------~~~~~~T~~al~aL~~~g~~---~~~~~~i~~a~~~Ll~~Q~-~d  192 (212)
                      +..+++++||.+... ++ |+|.-...        ....+.-++++.||+.+...   +.....+++.+++|.+... ++
T Consensus        76 ~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~  155 (384)
T cd00249          76 EAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDH  155 (384)
T ss_pred             HHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCC
Confidence            788999999999654 46 88853221        12367778888888775332   2234567778888888764 45


Q ss_pred             Cccc
Q 028222          193 GGWG  196 (212)
Q Consensus       193 Ggw~  196 (212)
                      |++.
T Consensus       156 g~~~  159 (384)
T cd00249         156 PGAF  159 (384)
T ss_pred             Cccc
Confidence            6653

Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.

>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]

Probab=92.22  E-value=0.58  Score=48.09  Aligned_cols=94  Identities=20%  Similarity=0.286  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCcc----chhhHHHHHHHHHHHcCcCCC-ChHH
Q 028222          103 TASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV----CFIYSTWWAISGLVAAEKTYS-NCLA  177 (212)
Q Consensus       103 Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~----~~~~~T~~al~aL~~~g~~~~-~~~~  177 (212)
                      +-.++..|-......+..+ .+...-+..+..-++.-+++||++ ..|+.    ..+--|++++..+..+..... +...
T Consensus       948 ni~v~~YL~~t~q~~~~~k-~ka~~~l~~GyqrqL~yk~~DgSy-SaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~ 1025 (1436)
T KOG1366|consen  948 NIYVLKYLPKTNQLTPELK-RKALKFLEQGYQRQLTYKRADGSY-SAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNV 1025 (1436)
T ss_pred             hhhHHHHHhhhhccChhHH-HHHHHHHHHHHHHHHhhhccCCCh-hhhcCCCCcccHHHHHHHHHHhhhccCceEecHHH
Confidence            4456666665554433322 334456777788888889999998 34433    234568899999988754322 3568


Q ss_pred             HHHHHHHHHhcccCCCccccc
Q 028222          178 IRKATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       178 i~~a~~~Ll~~Q~~dGgw~~~  198 (212)
                      +.++++||+++|.++|+|...
T Consensus      1026 i~~a~~wl~~~Qk~~GsF~e~ 1046 (1436)
T KOG1366|consen 1026 ITQALNWLSQQQKENGSFKEV 1046 (1436)
T ss_pred             HHHHHHHHHHhhccCceEecc
Confidence            899999999999999998753

>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase

Probab=92.19  E-value=1.4  Score=41.94  Aligned_cols=122  Identities=11%  Similarity=0.043  Sum_probs=73.9

Q ss_pred             cHHHHHHHHHHHHhcccC--CCceeecCCCCChhhhhhcCcccccch-hhcccCcc--chHHHHHHHHHHHHhhCCccch
Q 028222           48 EPERFYDAANFMLYIQSK--TGGITGWEPAGAPSWIELLNPIEFLDE-VIIEHDYV--ECTASALKAMTLFQKLYPKHKK  122 (212)
Q Consensus        48 ~~~~i~~av~~Ll~~Q~~--dGgw~~~~~~~~~~~~~~l~~~e~~~~-~~~d~~~~--~~Ta~al~aL~~~~~~~~~~~~  122 (212)
                      ..+.+.+.+--|+.++..  .|+.-.-....       ++  |..++ ...|+..+  -..+.++.||..++.       
T Consensus       249 ~~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts-------~p--e~~g~~~n~dYryvW~RD~a~~a~AL~~~G~-------  312 (648)
T TIGR01535       249 GNSLYYVSMMILKAHEDKTNPGAYIASLSIP-------WG--DGQADDNTGGYHLVWPRDLYQVANAFLAAGD-------  312 (648)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCcEEEecCCC-------CC--ccCCCCCCCceEEEehhhHHHHHHHHHHCCC-------
Confidence            356678888888888775  38875322100       10  11111 12233322  346778888888763       


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCcCCC--------CccchhhHHHHHHHHHHH---cCcCCCChHHHHHHHHHHHhcc
Q 028222          123 NEVNNFITNGVKFTEDSQKLDGSWYGT--------WGVCFIYSTWWAISGLVA---AEKTYSNCLAIRKATDFLLNIQ  189 (212)
Q Consensus       123 ~~i~~~i~ra~~~L~~~Q~~dG~w~g~--------~~~~~~~~T~~al~aL~~---~g~~~~~~~~i~~a~~~Ll~~Q  189 (212)
                         .+..++.++||.+.|.++|.|...        |..--...++..|.++..   .+.. ...+.|+++++||.+.-
T Consensus       313 ---~~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~~-~~~~~vk~aadfl~~~~  386 (648)
T TIGR01535       313 ---VDSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDHA-FYDKMLKPAADFIVKNG  386 (648)
T ss_pred             ---HHHHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHHHcC
Confidence               256899999999999999998532        211122345555554443   3432 24678999999999864

Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.

>TIGR01577 oligosac_amyl oligosaccharide amylase

Probab=85.21  E-value=2.2  Score=40.27  Aligned_cols=69  Identities=14%  Similarity=0.236  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHhccccC-CCcCCC----------C--ccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCC
Q 028222          127 NFITNGVKFTEDSQKLD-GSWYGT----------W--GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDG  193 (212)
Q Consensus       127 ~~i~ra~~~L~~~Q~~d-G~w~g~----------~--~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dG  193 (212)
                      ..+++.+-=|+.++.++ |+.-..          |  +-+-...++++++||..+|..    +.+++.++||.+.|.+||
T Consensus       256 ~~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~~----~~a~~~l~~l~~~q~~~G  331 (616)
T TIGR01577       256 SLYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGYH----DRVDRFFRWAMQTQSRDG  331 (616)
T ss_pred             HHHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCCH----HHHHHHHHHHHHhhCcCC
Confidence            56677766677777766 763111          1  112234578899999999975    588999999999999999


Q ss_pred             cccccc
Q 028222          194 GWGESY  199 (212)
Q Consensus       194 gw~~~~  199 (212)
                      +|-..+
T Consensus       332 ~~~~~~  337 (616)
T TIGR01577       332 SWQQRY  337 (616)
T ss_pred             CcceEE
Confidence            986543

The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.

>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5

Probab=84.79  E-value=7.4  Score=33.60  Aligned_cols=94  Identities=20%  Similarity=0.276  Sum_probs=62.1

Q ss_pred             cchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccc--cCCCcCCCC-------ccchhhHHHHHHHHHHHc--
Q 028222          100 VECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQK--LDGSWYGTW-------GVCFIYSTWWAISGLVAA--  168 (212)
Q Consensus       100 ~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~--~dG~w~g~~-------~~~~~~~T~~al~aL~~~--  168 (212)
                      +.+++..|-+++.+...  +  .++..+.++++++||.+...  ++|+|.-..       .....|..++++.||+.+  
T Consensus        20 ~~~q~R~~~~fa~a~~~--g--~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~   95 (346)
T PF07221_consen   20 LWVQARQLYTFARAYRL--G--RPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARA   95 (346)
T ss_dssp             HHHHHHHHHHHHHHHHT--T--SHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHC
T ss_pred             eeeeHHHHHHHHHHHhc--C--chhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHH
Confidence            34577788888776552  2  34567889999999999984  558885321       123468889999999874  


Q ss_pred             -CcCCCChHHHHHHHHHHHhcc-cCC-Cccccc
Q 028222          169 -EKTYSNCLAIRKATDFLLNIQ-CDD-GGWGES  198 (212)
Q Consensus       169 -g~~~~~~~~i~~a~~~Ll~~Q-~~d-Ggw~~~  198 (212)
                       |.+ ...+.+++++++|.+.- +++ |++...
T Consensus        96 tg~~-~~~~~A~~~~~~l~~~~~d~~~g~~~~~  127 (346)
T PF07221_consen   96 TGDP-EALELAEQTLEFLERRFWDPEGGGYRES  127 (346)
T ss_dssp             TT-T-THHHHHHHHHHHHHHHTEETTTTEE--E
T ss_pred             hCCh-hHHHHHHHHHHHHHHHhcccccCcceec
Confidence             332 23567788899998875 454 555543

3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.

>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein

Probab=83.00  E-value=29  Score=29.95  Aligned_cols=28  Identities=11%  Similarity=0.163  Sum_probs=23.7

Q ss_pred             CCCcHHHHHHHHHHHHhcccCCCceeec
Q 028222           45 EKMEPERFYDAANFMLYIQSKTGGITGW   72 (212)
Q Consensus        45 ~~~~~~~i~~av~~Ll~~Q~~dGgw~~~   72 (212)
                      ++...+.+.++++|+.+.+.++|.|+..
T Consensus       183 ~~~~~~~i~~~i~~~~~~~~~~g~w~~~  210 (343)
T cd04794         183 KPSLAPLIKRSLDYLLSLQFPSGNFPSS  210 (343)
T ss_pred             CccHHHHHHHHHHHHHHhhccCCCCCCc
Confidence            4566889999999999999899999754

This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.

>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]

Probab=82.34  E-value=7.6  Score=33.89  Aligned_cols=77  Identities=13%  Similarity=0.032  Sum_probs=49.4

Q ss_pred             cHHHHHHHHHHHHhcccCCCceeecCCC-CChhhhhhcCcccccchhhcccCccch--HHHHHHHHHHHHhhCCccchhH
Q 028222           48 EPERFYDAANFMLYIQSKTGGITGWEPA-GAPSWIELLNPIEFLDEVIIEHDYVEC--TASALKAMTLFQKLYPKHKKNE  124 (212)
Q Consensus        48 ~~~~i~~av~~Ll~~Q~~dGgw~~~~~~-~~~~~~~~l~~~e~~~~~~~d~~~~~~--Ta~al~aL~~~~~~~~~~~~~~  124 (212)
                      -.+.++..++-|+++|..+|=|-..--+ +.                   .+.+++  |+....+|..-...  +.-.++
T Consensus       230 l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~-------------------~sy~EsSaSa~faYallkgi~~--G~l~~~  288 (357)
T COG4225         230 LLNVLRDLVDALIRYQDESGLWHTILDDGRP-------------------GSYLESSASAGFAYALLKGINL--GILDPE  288 (357)
T ss_pred             HHHHHHHHHHHHHHhhccccchhhhhccCCC-------------------CCchhhhHHHHHHHHHHHHHhc--CCCCch
Confidence            3567889999999999999999754211 00                   123334  44445555542211  222234


Q ss_pred             HHHHHHHHHHHHHhccccCCC
Q 028222          125 VNNFITNGVKFTEDSQKLDGS  145 (212)
Q Consensus       125 i~~~i~ra~~~L~~~Q~~dG~  145 (212)
                      ..+.++||++-|+..-.++|-
T Consensus       289 ~~~~~~kA~~aLl~~i~~~g~  309 (357)
T COG4225         289 YAPVAEKALDALLGHIDEEGE  309 (357)
T ss_pred             hhHHHHHHHHHHHhhcccccc
Confidence            458999999999999988773

>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function

Probab=81.71  E-value=5.9  Score=36.61  Aligned_cols=79  Identities=16%  Similarity=0.120  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCC-----------CCcc--chhhHHHHHHHHHHHc-
Q 028222          103 TASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYG-----------TWGV--CFIYSTWWAISGLVAA-  168 (212)
Q Consensus       103 Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g-----------~~~~--~~~~~T~~al~aL~~~-  168 (212)
                      ++.-|.+++......   .++++.+.+++.|+.|++.|++||-...           .|..  ...|.....+.||.+. 
T Consensus        62 ~g~wl~a~a~~~~~~---~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y  138 (520)
T PF07944_consen   62 VGKWLEAAAYAYAYT---GDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYY  138 (520)
T ss_pred             HHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHH
Confidence            667777777665432   2367888999999999999999994421           2322  1145555566666643 


Q ss_pred             ---CcCCCChHHHHHHHHHH
Q 028222          169 ---EKTYSNCLAIRKATDFL  185 (212)
Q Consensus       169 ---g~~~~~~~~i~~a~~~L  185 (212)
                         |.. ..-+++.|..+|+
T Consensus       139 ~~tG~~-~~L~v~~k~ad~~  157 (520)
T PF07944_consen  139 EATGNE-RALDVATKLADWV  157 (520)
T ss_pred             HHHCcH-HHHHHHHHHHHHH
Confidence               433 2466788899999

One member of this family is annotated as a possible arabinosidase, but no references were found to back this.

>COG2373 Large extracellular alpha-helical protein [General function prediction only]

Probab=81.21  E-value=7.6  Score=40.80  Aligned_cols=88  Identities=23%  Similarity=0.232  Sum_probs=57.8

Q ss_pred             cchHHHHHHHHHHHHhhCCc--cchhHHHHHHHHHHHHHHhccccCCCcCCCCcc---chhhHHHHHHHHHHHcC---cC
Q 028222          100 VECTASALKAMTLFQKLYPK--HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV---CFIYSTWWAISGLVAAE---KT  171 (212)
Q Consensus       100 ~~~Ta~al~aL~~~~~~~~~--~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~---~~~~~T~~al~aL~~~g---~~  171 (212)
                      .+-|+..++.|........+  .....+...++.++.-|++.|..+|+| +-|+.   ....-|++++..|.++.   ..
T Consensus      1170 ~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F-~~W~~~~~~d~~ltaYa~~Fl~~A~e~g~~ 1248 (1621)
T COG2373        1170 AEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAF-GLWGGNGSGDPWLTAYAVDFLLRAREQGYS 1248 (1621)
T ss_pred             hhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCce-eecCCCCCcchhhhHHHHHHHhhhhhcCcC
Confidence            45566655555544332222  233556788999999999999999998 55643   34567888888888773   22


Q ss_pred             CCChHHHHHHHHHHHhcc
Q 028222          172 YSNCLAIRKATDFLLNIQ  189 (212)
Q Consensus       172 ~~~~~~i~~a~~~Ll~~Q  189 (212)
                      . -..++.++.+++++.-
T Consensus      1249 v-p~~~~~~~~~~~~~~l 1265 (1621)
T COG2373        1249 V-PSDALNQMLERLLEYL 1265 (1621)
T ss_pred             C-CHHHHHHHHHHHHHHH
Confidence            2 3678888877655533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
1w6j_A	732	Structure Of Human Osc In Complex With Ro 48-8071 L		9e-42
1w6k_A	732	Structure Of Human Osc In Complex With Lanosterol L		1e-41
3sqc_A	631	Squalene-Hopene Cyclase Length = 631		8e-08
2sqc_A	631	Squalene-Hopene Cyclase From Alicyclobacillus Acido		9e-08
1gsz_A	631	Crystal Structure Of A Squalene Cyclase In Complex		1e-07

>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732

Iteration: 1
 Score =  166 bits (420), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 123/214 (57%), Gaps = 4/214 (1%)
Query: 2   FRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY 61
           +R + KGG++FS  D G  VSDC++E+    L L    P +  E +  ER  DA   +L 
Sbjct: 434 YRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVT-EHIPRERLCDAVAVLLN 492
Query: 62  IQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHK 121
           +++  GG   +E       +ELLNP E   +++I++ YVECT++ ++A+  F K +P+H+
Sbjct: 493 MRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHR 552
Query: 122 KNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSN---CLAI 178
             E+   +T G++F    Q+ DGSW G+WGVCF Y TW+ +       +TY +   C  +
Sbjct: 553 AAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEV 612
Query: 179 RKATDFLLNIQCDDGGWGESYLSCPNKLHMNRIQ 212
            +A DFLL+ Q  DGGWGE + SC  + ++   Q
Sbjct: 613 SRACDFLLSRQMADGGWGEDFESCEERRYLQSAQ 646

>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732

Iteration: 1
 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 123/214 (57%), Gaps = 4/214 (1%)
Query: 2   FRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY 61
           +R + KGG++FS  D G  VSDC++E+    L L    P +  E +  ER  DA   +L 
Sbjct: 434 YRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVT-EHIPRERLCDAVAVLLN 492
Query: 62  IQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHK 121
           +++  GG   +E       +ELLNP E   +++I++ YVECT++ ++A+  F K +P+H+
Sbjct: 493 MRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHR 552
Query: 122 KNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSN---CLAI 178
             E+   +T G++F    Q+ DGSW G+WGVCF Y TW+ +       +TY +   C  +
Sbjct: 553 AAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEV 612
Query: 179 RKATDFLLNIQCDDGGWGESYLSCPNKLHMNRIQ 212
            +A DFLL+ Q  DGGWGE + SC  + ++   Q
Sbjct: 613 SRACDFLLSRQMADGGWGEDFESCEERRYVQSAQ 646

>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase Length = 631

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 17/195 (8%)
Query: 4   HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ 63
           ++  GG+ F   +   P   C +   V  L+   +P     E+   +       +++ +Q
Sbjct: 357 NLKPGGFAFQFDNVYYP-DVCDTAVVVWALNTLRLP----DERRRRDAMTKGFRWIVGMQ 411
Query: 64  SKTGGITGWEPAGAPSWIELLNPIEFLD-EVIIEHDYVECTASALKAMTLFQKLYPKHKK 122
           S  GG   W      +  +L N I F D   + +    + TA  L+    F         
Sbjct: 412 SSNGG---WGAYDVDNTSDLPNHIPFCDFGEVTDPPSEDVTAHVLECFGSF-------GY 461
Query: 123 NEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKAT 182
           ++    I   V++ +  QK DGSW+G WGV ++Y T   +S L A          I+KA 
Sbjct: 462 DDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPY-IQKAL 520
Query: 183 DFLLNIQCDDGGWGE 197
           D++   Q  DGGWGE
Sbjct: 521 DWVEQHQNPDGGWGE 535

>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus Acidocaldarius Length = 631

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 17/195 (8%)
Query: 4   HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ 63
           ++  GG+ F   +   P   C +   V  L+   +P     E+   +       +++ +Q
Sbjct: 357 NLKPGGFAFQFDNVYYP-DVCDTAVVVWALNTLRLP----DERRRRDAMTKGFRWIVGMQ 411
Query: 64  SKTGGITGWEPAGAPSWIELLNPIEFLD-EVIIEHDYVECTASALKAMTLFQKLYPKHKK 122
           S  GG   W      +  +L N I F D   + +    + TA  L+    F         
Sbjct: 412 SSNGG---WGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSF-------GY 461
Query: 123 NEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKAT 182
           ++    I   V++ +  QK DGSW+G WGV ++Y T   +S L A          I+KA 
Sbjct: 462 DDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPY-IQKAL 520
Query: 183 DFLLNIQCDDGGWGE 197
           D++   Q  DGGWGE
Sbjct: 521 DWVEQHQNPDGGWGE 535

>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With The Potential Anticholesteremic Drug Ro48-8071 Length = 631

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 17/195 (8%)
Query: 4   HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ 63
           ++  GG+ F   +   P  D   ++ V    L+T+   +  E+   +       +++ +Q
Sbjct: 357 NLKPGGFAFQFDNVYYPDVD---DTAVVVWALNTL--RLPDERRRRDAMTKGFRWIVGMQ 411
Query: 64  SKTGGITGWEPAGAPSWIELLNPIEFLD-EVIIEHDYVECTASALKAMTLFQKLYPKHKK 122
           S  GG   W      +  +L N I F D   + +    + TA  L+    F         
Sbjct: 412 SSNGG---WGAYDVDNTSDLPNHIPFCDFGEVTDPPSEDVTAHVLECFGSF-------GY 461
Query: 123 NEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKAT 182
           ++    I   V++ +  QK DGSW+G WGV ++Y T   +S L A          I+KA 
Sbjct: 462 DDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPY-IQKAL 520
Query: 183 DFLLNIQCDDGGWGE 197
           D++   Q  DGGWGE
Sbjct: 521 DWVEQHQNPDGGWGE 535

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	4e-57
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	4e-47
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	1e-05
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	3e-10
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	4e-06
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	1e-04
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	5e-04
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	7e-04

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732

 Score =  191 bits (485), Expect = 4e-57
 Identities = 77/208 (37%), Positives = 120/208 (57%), Gaps = 4/208 (1%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
            +R + KGG++FS  D G  VSDC++E+    L L    P +  E +  ER  DA   +L
Sbjct: 433 YYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHV-TEHIPRERLCDAVAVLL 491

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +++  GG   +E       +ELLNP E   +++I++ YVECT++ ++A+  F K +P+H
Sbjct: 492 NMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEH 551

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSN---CLA 177
           +  E+   +T G++F    Q+ DGSW G+WGVCF Y TW+ +       +TY +   C  
Sbjct: 552 RAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAE 611

Query: 178 IRKATDFLLNIQCDDGGWGESYLSCPNK 205
           + +A DFLL+ Q  DGGWGE + SC  +
Sbjct: 612 VSRACDFLLSRQMADGGWGEDFESCEER 639

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631

 Score =  163 bits (412), Expect = 4e-47
 Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 15/210 (7%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
              ++  GG+ F   +   P    ++   V  L+   +P E    +   +       +++
Sbjct: 354 KRPNLKPGGFAFQFDNVYYPDVCDTAVV-VWALNTLRLPDE----RRRRDAMTKGFRWIV 408

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QS  GG   ++          +   +F +  + +    + TA  L+        +   
Sbjct: 409 GMQSSNGGWGAYDVDNTSDLPNHIPFSDFGE--VTDPPSEDVTAHVLEC-------FGSF 459

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
             ++    I   V++ +  QK DGSW+G WGV ++Y T   +S L A          I+K
Sbjct: 460 GYDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREP-YIQK 518

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHMNR 210
           A D++   Q  DGGWGE   S  +  +  +
Sbjct: 519 ALDWVEQHQNPDGGWGEDCRSYEDPAYAGK 548

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 124 EVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATD 183
                +   V++    QK +G W+G           + +   +       +   + K   
Sbjct: 10  AYARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRV---DRDRMEKIRR 66

Query: 184 FLLNIQCDDGGWG 196
           +LL+ Q +DG W 
Sbjct: 67  YLLHEQREDGTWA 79

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Length = 408

 Score = 57.9 bits (139), Expect = 3e-10
 Identities = 24/191 (12%), Positives = 51/191 (26%), Gaps = 42/191 (21%)

Query: 54  DAANFMLYIQSKTGG------------ITGWEPAGAPSWIELLNPIEFLDEVIIEHDYV- 100
             A+ ++  Q+  GG            + G    G           +       +  YV 
Sbjct: 85  HVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVG 144

Query: 101 ----ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIY 156
               + T + ++ +          +     +    G+++   SQ  +G W   W +   Y
Sbjct: 145 TIDNDATVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGY 204

Query: 157 S------------TWWAISGLVAAEKTYSNC---------LAIRKATDFLLNIQCDDGG- 194
                            +S + A    +             A   A   ++  Q    G 
Sbjct: 205 HDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGK 264

Query: 195 ---WGESYLSC 202
              WG+ + + 
Sbjct: 265 RLGWGQQHDAL 275

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Length = 408

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 25/170 (14%), Positives = 47/170 (27%), Gaps = 33/170 (19%)

Query: 52  FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMT 111
                 ++L  Q   GG   W P   P      + I + D+ ++        A  L  + 
Sbjct: 177 ALKGIEYLLASQFPNGG---W-PQVWPLEGGYHDAITYNDDALVH------VAELLSDIA 226

Query: 112 LFQKLY---PKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGL--- 165
             +  +   P   +          +    ++Q +       WG      T    S     
Sbjct: 227 AGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFE 286

Query: 166 ---VAAEKTYSNCL--------------AIRKATDFLLNIQCDDGGWGES 198
              +++ ++    L              AIR    +L      D  W +S
Sbjct: 287 PAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWVKS 336

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 17/163 (10%), Positives = 47/163 (28%), Gaps = 22/163 (13%)

Query: 42  IVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVE 101
           ++G  ++        + +L+  S  GG  G         +                    
Sbjct: 101 LLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLL------------------- 141

Query: 102 CTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGT-WGVCFIYSTWW 160
            T +++ ++ +           ++     +  +F    ++ DG +     G   +  T+ 
Sbjct: 142 PTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYC 201

Query: 161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCP 203
            +      +        +     F+   Q  +GG+  +    P
Sbjct: 202 LLVVATLLDI--ITPELLHNVDKFVSACQTYEGGFACASFPFP 242

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Length = 414

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 83  LLNPIEFLDEVIIEHDYVECTASALKAMT-LFQKLYPKHKKNEVNNFITNGVKFTEDSQK 141
           LL  +E    ++ +H  V+  A A  A + L        ++N +N  +    +    +Q 
Sbjct: 161 LLYAVEHKPHLLQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQT 220

Query: 142 LDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWG 196
            +G  +G      +YST  A+  L+ + +               L        + 
Sbjct: 221 PEGY-FGN-----VYSTPLALQLLMGSLRPSVELGTACLKAKAALQASLQHKTFQ 269

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 11/101 (10%)

Query: 99  YVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGT-WGVCFIYS 157
           ++  T SA++ +TL+  ++  +    V         + +  QK DGS+ G  WG      
Sbjct: 94  HLLYTLSAVQILTLYDSIHVINVDKVVA--------YVQSLQKEDGSFAGDIWGEIDTRF 145

Query: 158 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES 198
           ++ A++ L    K   + + + KA +F+L+    DGG+G  
Sbjct: 146 SFCAVATLALLGKL--DAINVEKAIEFVLSCMNFDGGFGCR 184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	100.0
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.97
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	99.92
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	99.91
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.89
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	99.89
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	99.87
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	99.85
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	99.85
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	99.84
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	99.83
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	99.83
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	99.77
2wy7_A	310	Complement C3D fragment; immune system, immune res	99.74
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	99.71
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	99.7
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	99.65
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	99.62
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	99.61
2wy7_A	310	Complement C3D fragment; immune system, immune res	99.6
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	99.5
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	99.48
2hr0_B	915	Complement C3 alpha' chain; complement component C	99.46
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	99.34
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	99.33
2pmv_A	399	Gastric intrinsic factor; cobalamin transport prot	99.29
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	99.28
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	99.24
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	99.24
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	99.23
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	99.18
2hr0_B	915	Complement C3 alpha' chain; complement component C	99.15
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	98.98
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	98.8
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	98.66
2pmv_A	399	Gastric intrinsic factor; cobalamin transport prot	98.57
3prx_B	1642	Cobra venom factor; immune system, complement, imm	98.56
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	98.49
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	98.41
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	98.32
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	98.24
3prx_B	1642	Cobra venom factor; immune system, complement, imm	98.06
3k11_A	445	Putative glycosyl hydrolase; structural genomics,	96.95
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	96.72
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	96.57
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	96.56
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	96.55
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	96.48
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	96.47
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	96.46
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	96.43
3pmm_A	382	Putative cytoplasmic protein; structural genomics,	96.23
3k11_A	445	Putative glycosyl hydrolase; structural genomics,	95.46
2gz6_A	388	N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C	95.34
2gz6_A	388	N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C	94.78
1nc5_A	373	Hypothetical protein YTER; structural genomics, he	94.53
1nc5_A	373	Hypothetical protein YTER; structural genomics, he	94.17
3pmm_A	382	Putative cytoplasmic protein; structural genomics,	93.69
1ulv_A	1020	Glucodextranase; GH family 15, (alpha-alpha)6-barr	93.35
3gt5_A	402	N-acetylglucosamine 2-epimerase; structural genomi	93.03
2fba_A	492	Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hy	92.1
1fp3_A	402	N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr	91.59
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	91.45
1lf6_A	684	Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica	90.82
1lf6_A	684	Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica	90.56
3gt5_A	402	N-acetylglucosamine 2-epimerase; structural genomi	86.8
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	86.06
3h7l_A	586	Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru	85.37
2dna_A	67	Unnamed protein product; ubiquitin associated doma	84.9
1gai_A	472	Glucoamylase-471; hydrolase, glycosidase, polysacc	84.2
3k7x_A	349	LIN0763 protein; Q92DQ0, LKR23, NESG, structural g	82.7
3e6u_A	411	LANC-like protein 1; alpha barrel, cytoplasm, sign	82.69

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=100.00  E-value=1.3e-36  Score=284.69  Aligned_cols=207  Identities=37%  Similarity=0.793  Sum_probs=180.5

Q ss_pred             CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222            1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW   80 (212)
Q Consensus         1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~   80 (212)
                      +||+.++|||+|+..+..+|++|+||.+|+||..+.+.++. .+..+.++.++++++||+++||+||||+.|++.+...|
T Consensus       433 ~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~-~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~  511 (732)
T 1w6k_A          433 YYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPH-VTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHL  511 (732)
T ss_dssp             GTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTT-CCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGG
T ss_pred             cccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhccccc-ccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHH
Confidence            48999999999998888899999999999999998654321 13457789999999999999999999999999888999


Q ss_pred             hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222           81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW  160 (212)
Q Consensus        81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~  160 (212)
                      ++.+++.+.|++..++++++++|+.+|.+|..++...+.++.+++.++++||++||++.|++||+|.+.|+.+++|+|++
T Consensus       512 l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~~~~Y~T~~  591 (732)
T 1w6k_A          512 LELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWF  591 (732)
T ss_dssp             GGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHH
T ss_pred             HhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCCccchHHHH
Confidence            99999999999888899999999999999999987666666566778999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcCCCCh---HHHHHHHHHHHhcccCCCccccccCcCCCCccc
Q 028222          161 AISGLVAAEKTYSNC---LAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM  208 (212)
Q Consensus       161 al~aL~~~g~~~~~~---~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~  208 (212)
                      ++.||..+|......   +.++++++||+++|++||||+..+.++.+..|+
T Consensus       592 al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~  642 (732)
T 1w6k_A          592 GLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYV  642 (732)
T ss_dssp             HHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCC
T ss_pred             HHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccC
Confidence            999999999865333   799999999999999999999876554444443

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=99.97  E-value=1.1e-31  Score=248.22  Aligned_cols=190  Identities=23%  Similarity=0.363  Sum_probs=159.5

Q ss_pred             CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222            1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW   80 (212)
Q Consensus         1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~   80 (212)
                      ++++.++|||+|+..++.+|++|+||.+|+||..+.. +.    .+..++.+.++++||+++|++||||+.|+.++...+
T Consensus       354 ~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~-~~----~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~  428 (631)
T 2sqc_A          354 KRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRL-PD----ERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDL  428 (631)
T ss_dssp             TCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCC-SC----HHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSG
T ss_pred             hcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCC-Cc----cchhHHHHHHHHHHHHhhcCCCCCCCccCCCCcccc
Confidence            4678889999999999999999999999999988753 21    123567899999999999999999998877766666


Q ss_pred             hhhcCcccccch--hhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHH
Q 028222           81 IELLNPIEFLDE--VIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYST  158 (212)
Q Consensus        81 ~~~l~~~e~~~~--~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T  158 (212)
                      ++.++    |.+  ..+|++++++|+.+|.+|..++.  +.     ..+.++|+++||++.|++||+|++.|+.+++|.|
T Consensus       429 ~~~~~----F~~~~~~~d~~~vd~Ta~vl~aL~~~g~--~~-----~~~~i~rai~~L~~~Q~~DGsw~g~wg~~~~y~T  497 (631)
T 2sqc_A          429 PNHIP----FSDFGEVTDPPSEDVTAHVLECFGSFGY--DD-----AWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGT  497 (631)
T ss_dssp             GGGST----TCSSSCSSCCCBHHHHHHHHHHHHTTTC--CT-----TSHHHHHHHHHHHHHCCTTSCCCCSSBSSHHHHH
T ss_pred             ccccc----cccCCcccCCCCchHHHHHHHHHHhcCC--Cc-----cHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHH
Confidence            66665    543  35678899999999999998753  21     1368999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcc
Q 028222          159 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLH  207 (212)
Q Consensus       159 ~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y  207 (212)
                      ++++.+|..+|... ..+.++++++||+++|++||||+..+.++.+..|
T Consensus       498 a~~l~aL~~~g~~~-~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~  545 (631)
T 2sqc_A          498 GAVVSALKAVGIDT-REPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAY  545 (631)
T ss_dssp             HHHHHHHHHTTCCT-TSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGG
T ss_pred             HHHHHHHHHhCCcc-cHHHHHHHHHHHHHhCcCCCCcCCcccccccccc
Confidence            99999999999764 6789999999999999999999987766554433

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=99.92  E-value=1.2e-25  Score=195.03  Aligned_cols=163  Identities=14%  Similarity=0.152  Sum_probs=121.3

Q ss_pred             CCCCCccHHHHHHHHHHhhcC-CCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcc
Q 028222           18 GLPVSDCSSESFVCCLHLSTM-PPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIE   96 (212)
Q Consensus        18 ~~~~~d~Ta~~l~al~~~~~~-~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d   96 (212)
                      .++|.|+|+.+|++|..+... .+.  ..+.+.+++.|+++||+.+|++||||+.|.+++ ..++..||    |++    
T Consensus       144 ~T~DnddTa~vl~aL~rv~~~~t~~--~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn-~~y~~~Ip----FnD----  212 (408)
T 1r76_A          144 GTIDNDATVTEIRFLAQVVSQLAPE--EAAPYRDAALKGIEYLLASQFPNGGWPQVWPLE-GGYHDAIT----YND----  212 (408)
T ss_dssp             SBCGGGTTHHHHHHHHHHHHHSCGG--GCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCC-CGGGGSEE----CGG----
T ss_pred             CCCCCchHHHHHHHHHHHHhhcccc--ccHHHHHHHHHHHHHHHHccCCCCCCcCcCccc-cccccCCC----cCc----
Confidence            357899999999999996542 100  134678999999999999999999999999877 46777777    653    


Q ss_pred             cCccchHHHHHHHHHHHHhhCC------ccchhHHHHHHHHHHHHHHhcccc-CCCcCCCCccchhhHHHH---------
Q 028222           97 HDYVECTASALKAMTLFQKLYP------KHKKNEVNNFITNGVKFTEDSQKL-DGSWYGTWGVCFIYSTWW---------  160 (212)
Q Consensus        97 ~~~~~~Ta~al~aL~~~~~~~~------~~~~~~i~~~i~ra~~~L~~~Q~~-dG~w~g~~~~~~~~~T~~---------  160 (212)
                          ++|+.||..|..++....      ...+.+..++++||++||++.|.+ ||+|+ +|+..+.|+|..         
T Consensus       213 ----Dvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~  287 (408)
T 1r76_A          213 ----DALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEP  287 (408)
T ss_dssp             ----GHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCC
T ss_pred             ----HHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCC
Confidence                579999999988875211      111234668999999999999999 99998 998877776544         


Q ss_pred             ----------HHHHHHHcCcCC-CChHHHHHHHHHHHhcccCCCccc
Q 028222          161 ----------AISGLVAAEKTY-SNCLAIRKATDFLLNIQCDDGGWG  196 (212)
Q Consensus       161 ----------al~aL~~~g~~~-~~~~~i~~a~~~Ll~~Q~~dGgw~  196 (212)
                                +|..|.....+. ...++|++|++||.++|++||+|-
T Consensus       288 psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~w~  334 (408)
T 1r76_A          288 AALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWV  334 (408)
T ss_dssp             SCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC----
T ss_pred             ccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhcCCCcee
Confidence                      444455544321 124589999999999999999997

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=99.91  E-value=1.5e-25  Score=189.69  Aligned_cols=168  Identities=15%  Similarity=0.215  Sum_probs=131.9

Q ss_pred             CCCCCcccccc-C----------CCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeec
Q 028222            4 HISKGGWTFSD-K----------DHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGW   72 (212)
Q Consensus         4 ~~~~Ggw~~~~-~----------~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~   72 (212)
                      |++.|||.+.. +          ...++|.|+|+.+|++|..+....    ..+...++++|+++||+++|.+||||+.|
T Consensus        44 Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~----~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqF  119 (332)
T 1gxm_A           44 QQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSG----GNTKYRDAVRKAANFLVNSQYSTGALPQF  119 (332)
T ss_dssp             CCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHCCTTSCCBSE
T ss_pred             CcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccc----cchHHHHHHHHHHHHHHhccCCCCCcccc
Confidence            88999999521 1          233589999999999999865421    13467899999999999999999999999


Q ss_pred             CCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccc--------hhHHHHHHHHHHHHHHhccccCC
Q 028222           73 EPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHK--------KNEVNNFITNGVKFTEDSQKLDG  144 (212)
Q Consensus        73 ~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~--------~~~i~~~i~ra~~~L~~~Q~~dG  144 (212)
                      .+.+ ..++..||    |++        ++|+.||..|..++...+.+.        ..+..++++||++||++.|.+||
T Consensus       120 dpd~-~~Yl~~Ip----FnD--------DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dg  186 (332)
T 1gxm_A          120 YPLK-GGYSDHAT----FND--------NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQN  186 (332)
T ss_dssp             ESCC-SGGGGSEE----CGG--------GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEET
T ss_pred             CCCc-ccccccCC----cch--------HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccC
Confidence            8876 55667777    653        579999999999864322120        14456899999999999999999


Q ss_pred             CcCCCCccchhhHHHH----------HHHHHHHcCc-------CCCChH----HHHHHHHHHHhccc
Q 028222          145 SWYGTWGVCFIYSTWW----------AISGLVAAEK-------TYSNCL----AIRKATDFLLNIQC  190 (212)
Q Consensus       145 ~w~g~~~~~~~~~T~~----------al~aL~~~g~-------~~~~~~----~i~~a~~~Ll~~Q~  190 (212)
                      +|.+.|+..+.|+|..          +|.++..+|+       +.  ++    +|++|++||.++|+
T Consensus       187 gw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~--~~~v~~aI~~Av~WL~~~q~  251 (332)
T 1gxm_A          187 GVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQ--TAEIEQAVRAGVAWFNSPRT  251 (332)
T ss_dssp             TEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCC--CHHHHHHHHHHHHHHTCTTT
T ss_pred             CCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHhccc
Confidence            9999999999898877          6666666533       32  34    79999999999999

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=99.89  E-value=4.8e-23  Score=190.46  Aligned_cols=168  Identities=22%  Similarity=0.401  Sum_probs=127.9

Q ss_pred             CCCCCCccc-cccCCC----------------CCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccC
Q 028222            3 RHISKGGWT-FSDKDH----------------GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSK   65 (212)
Q Consensus         3 ~~~~~Ggw~-~~~~~~----------------~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~   65 (212)
                      .|++.|||+ |.....                ..|++|+|+.+|.+|..+..        +...+.++++++||+++|++
T Consensus       410 ~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~--------~~~~~~i~rai~~L~~~Q~~  481 (631)
T 2sqc_A          410 MQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGY--------DDAWKVIRRAVEYLKREQKP  481 (631)
T ss_dssp             TCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTC--------CTTSHHHHHHHHHHHHHCCT
T ss_pred             hcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHHhcCC
Confidence            478899996 432110                12788999999999988742        23467899999999999999


Q ss_pred             CCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCC
Q 028222           66 TGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGS  145 (212)
Q Consensus        66 dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~  145 (212)
                      ||||.....                      ..++..|+.++.+|..++.. .      ..+.++|+++||++.|++||+
T Consensus       482 DGsw~g~wg----------------------~~~~y~Ta~~l~aL~~~g~~-~------~~~~i~rav~~L~s~Q~~DGg  532 (631)
T 2sqc_A          482 DGSWFGRWG----------------------VNYLYGTGAVVSALKAVGID-T------REPYIQKALDWVEQHQNPDGG  532 (631)
T ss_dssp             TSCCCCSSB----------------------SSHHHHHHHHHHHHHHTTCC-T------TSHHHHHHHHHHHHTCCTTSC
T ss_pred             CCCCCCCCC----------------------CCchHHHHHHHHHHHHhCCc-c------cHHHHHHHHHHHHHhCcCCCC
Confidence            999942111                      11234699999999987532 1      136899999999999999999


Q ss_pred             cCCC-----------CccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCc---CCCCcccc
Q 028222          146 WYGT-----------WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLS---CPNKLHMN  209 (212)
Q Consensus       146 w~g~-----------~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s---~~~~~y~~  209 (212)
                      |...           ++.+..+.|++||.+|..+|..  ..+.++++++||+++|++||||++...+   -+..+|+.
T Consensus       533 Wg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~--~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~  608 (631)
T 2sqc_A          533 WGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRA--ESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLG  608 (631)
T ss_dssp             CCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCS--SSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEE
T ss_pred             cCCccccccccccCCCCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHhccCCCCCcCCCCcccccccccceee
Confidence            9432           2345667899999999999987  3688999999999999999999987765   34555553

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=99.89  E-value=8.8e-24  Score=187.09  Aligned_cols=165  Identities=15%  Similarity=0.039  Sum_probs=124.0

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL   83 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~   83 (212)
                      |+.+|||..-+.+..+    ..--+|.+|..+.        .+..++.++++++||+++|++||||+.+..         
T Consensus        87 q~~~gg~~a~D~~r~~----l~y~~l~aL~lLg--------~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~---------  145 (437)
T 2h6f_B           87 RQLTDAYECLDASRPW----LCYWILHSLELLD--------EPIPQIVATDVCQFLELCQSPEGGFGGGPG---------  145 (437)
T ss_dssp             TEECGGGGGGTTCHHH----HHHHHHHHHHHTT--------CCCCHHHHHHHHHHHHHHBCTTSSBBSSTT---------
T ss_pred             CCCCCCcccccCCCcc----HHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHhCCCCCCcCCccC---------
Confidence            5678999964432211    1222455665553        235577899999999999999999997543         


Q ss_pred             cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCC-CccchhhHHHHHH
Q 028222           84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGT-WGVCFIYSTWWAI  162 (212)
Q Consensus        84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~-~~~~~~~~T~~al  162 (212)
                                  +.+++..|+.||.+|..++.... .  .  ...++|+++||++.|++||||.+. |+..+++.|..|+
T Consensus       146 ------------~~~~i~~T~~Al~aL~~lg~~~~-~--~--~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~  208 (437)
T 2h6f_B          146 ------------QYPHLAPTYAAVNALCIIGTEEA-Y--D--IINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAA  208 (437)
T ss_dssp             ------------CCBCHHHHHHHHHHHHHHCCHHH-H--T--TSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHH
T ss_pred             ------------CCcchhHHHHHHHHHHHhCCccc-c--c--chHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHH
Confidence                        12456679999999999864210 0  0  124789999999999999999885 8888888999999


Q ss_pred             HHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCccc
Q 028222          163 SGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM  208 (212)
Q Consensus       163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~  208 (212)
                      .+|..+|..  ..+.++|+++||+++|+.||||+..+..-+...||
T Consensus       209 ~~L~llg~~--~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T  252 (437)
T 2h6f_B          209 SVASLTNII--TPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYT  252 (437)
T ss_dssp             HHHHHTTCC--CTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHH
T ss_pred             HHHHHhCCC--ChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHH
Confidence            999999875  46789999999999999999999987655544444

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=99.87  E-value=6.2e-22  Score=176.65  Aligned_cols=131  Identities=11%  Similarity=0.083  Sum_probs=112.3

Q ss_pred             CCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHH
Q 028222           46 KMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEV  125 (212)
Q Consensus        46 ~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i  125 (212)
                      +...+..+++++||+++|++||||+.++..                   .+.+++.+|..||++|..++..+++++.++|
T Consensus       105 ~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~-------------------~~~~hla~TysAV~aL~ilg~~~p~~~~~~I  165 (520)
T 3q7a_B          105 ALDQGTKDRVVSTLLHFLSPKGGFGGGPAN-------------------SQIPHLLPTYASVCSLAIAGNDSSTGGWKDL  165 (520)
T ss_dssp             CCCHHHHHHHHHHHHTTBCTTSSBCSSCTT-------------------TSCCCHHHHHHHHHHHHHHCBSSTTSBHHHH
T ss_pred             CCChHHHHHHHHHHHHHcCCCCCCCCCCCC-------------------CCCCcHHHHHHHHHHHHHhCccccchhhhhh
Confidence            355678899999999999999999965421                   1356788999999999999876555555556


Q ss_pred             HHHHHHHHHHHHhccccCCCcCC-CCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccc
Q 028222          126 NNFITNGVKFTEDSQKLDGSWYG-TWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGE  197 (212)
Q Consensus       126 ~~~i~ra~~~L~~~Q~~dG~w~g-~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~  197 (212)
                      +..++++++||++.|++||+|.+ .|+..+++.|.+|+.+|..+|..  ..+.++++++||++||+.||||+.
T Consensus       166 d~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~--~~~~v~kav~fI~scQn~DGGfGe  236 (520)
T 3q7a_B          166 AAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDII--TPELLHNVDKFVSACQTYEGGFAC  236 (520)
T ss_dssp             HHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCC--CHHHHTTHHHHHHTTBCTTSSBCS
T ss_pred             hhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccC
Confidence            55588999999999999999988 59999999999999999999984  578999999999999999999998

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=99.85  E-value=1.3e-21  Score=170.30  Aligned_cols=144  Identities=14%  Similarity=0.054  Sum_probs=112.6

Q ss_pred             HHHHHHHHHhccc---------CCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccch
Q 028222           52 FYDAANFMLYIQS---------KTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKK  122 (212)
Q Consensus        52 i~~av~~Ll~~Q~---------~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~  122 (212)
                      .+++++||+++|+         ++|||+.++..+.+. ....++.   .+..+|++++.+|..+|.+|..++...+.   
T Consensus        69 ~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~-~d~~~~~---~~~~~d~~~v~~T~~Al~~L~~lg~~~~~---  141 (377)
T 1n4q_B           69 KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPF-NPSKNPG---TAHPYDSGHIAMTYTGLSCLIILGDDLSR---  141 (377)
T ss_dssp             HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCC-CSSCSCC---CCCTTCCCCHHHHHHHHHHHHHTTCCSTT---
T ss_pred             HHHHHHHHHHhcCCccccccCCCCCccCCCcccCCCh-hhhcccc---ccccCCCCCHHHHHHHHHHHHHhCcccch---
Confidence            6899999999999         689999887542221 0111111   13566889999999999999998643221   


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCcCC--CCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccC
Q 028222          123 NEVNNFITNGVKFTEDSQKLDGSWYG--TWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYL  200 (212)
Q Consensus       123 ~~i~~~i~ra~~~L~~~Q~~dG~w~g--~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~  200 (212)
                        +  ..+|+++||++.|++||+|.+  .|+..+++.|.+|+.+|..+|..  ..+.++++++||++||+.||||+..+.
T Consensus       142 --i--d~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~--~~~~v~ka~~fL~scQn~DGGfGe~p~  215 (377)
T 1n4q_B          142 --V--DKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNW--SGMDMKKAISYIRRSMSYDNGLAQGAG  215 (377)
T ss_dssp             --S--CHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCG--GGSCHHHHHHHHHHTBCTTSSBBSSTT
T ss_pred             --h--hHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence              1  247899999999999999998  69988899999999999999874  467899999999999999999999886


Q ss_pred             cCCCCccc
Q 028222          201 SCPNKLHM  208 (212)
Q Consensus       201 s~~~~~y~  208 (212)
                      .-+...||
T Consensus       216 ~ESh~g~T  223 (377)
T 1n4q_B          216 LESHGGST  223 (377)
T ss_dssp             SCBCHHHH
T ss_pred             CCCchhHH
Confidence            54444343

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=99.85  E-value=2.2e-21  Score=166.43  Aligned_cols=165  Identities=13%  Similarity=0.041  Sum_probs=128.8

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      .|++.|||+.+.  ...+..-.|..+|.+|..+...         .+..++++++||+++|++||||......       
T Consensus        78 ~Q~~dGGF~g~~--g~~~~l~~Ty~Al~~L~~l~~~---------~~id~~k~~~fL~~~Q~~DGsf~~~~~g-------  139 (331)
T 3dss_B           78 CQHECGGVSASI--GHDPHLLYTLSAVQILTLYDSI---------HVINVDKVVAYVQSLQKEDGSFAGDIWG-------  139 (331)
T ss_dssp             TBCTTSCBBSST--TSCBCHHHHHHHHHHHHHTTCG---------GGSCHHHHHHHHHHTBCTTSCBBSSTTC-------
T ss_pred             hcCCCCCcCCCC--CCCccHHHHHHHHHHHHHcCCc---------cHHHHHHHHHHHhccCCCCCCEecccCC-------
Confidence            478999999754  3467888999999999887431         1233799999999999999999842111       


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHH
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWA  161 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~a  161 (212)
                                    .+++..|+.++.+|..++...        ...++|+++||++.|++||||.+.++ .++...|.+|
T Consensus       140 --------------e~d~~~ty~Al~~L~llg~~~--------~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~a  197 (331)
T 3dss_B          140 --------------EIDTRFSFCAVATLALLGKLD--------AINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC  197 (331)
T ss_dssp             --------------CBCHHHHHHHHHHHHHHTCGG--------GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHH
T ss_pred             --------------CCchHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHH
Confidence                          123445888888888876431        13589999999999999999987764 3456779999


Q ss_pred             HHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222          162 ISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       162 l~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~  209 (212)
                      +.+|..+|...  ...++++++||+++|++||||...+..-++..|++
T Consensus       198 l~aL~llg~~~--~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~  243 (331)
T 3dss_B          198 TGFLAITSQLH--QVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSW  243 (331)
T ss_dssp             HHHHHHTTCGG--GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHH
T ss_pred             HHHHHhccccc--hhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHH
Confidence            99999998763  34589999999999999999999988888877764

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=99.84  E-value=6.6e-21  Score=163.46  Aligned_cols=165  Identities=14%  Similarity=0.120  Sum_probs=124.9

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      .|.++|||.-..  ..-+++.-|-.++.+|..+...         ....++++++||+++|++||||+..+..       
T Consensus       126 ~Q~~DGsf~~~~--~ge~d~~~ty~Al~~L~llg~~---------~~~~~~k~v~~L~s~Q~~dGGfg~~pg~-------  187 (331)
T 3dss_B          126 LQKEDGSFAGDI--WGEIDTRFSFCAVATLALLGKL---------DAINVEKAIEFVLSCMNFDGGFGCRPGS-------  187 (331)
T ss_dssp             TBCTTSCBBSST--TCCBCHHHHHHHHHHHHHHTCG---------GGSCHHHHHHHHHTTBCTTSCBCSSTTC-------
T ss_pred             cCCCCCCEeccc--CCCCchHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHhCcCCCCcCCCCCC-------
Confidence            478999998532  2234555677788888777531         2345899999999999999999853221       


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHH
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWA  161 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~a  161 (212)
                                    .+++..|+.++.+|..++...+        ..++|+++||+++|.+||||.++++ ...+..|.++
T Consensus       188 --------------esh~~~T~~al~aL~llg~~~~--------~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~  245 (331)
T 3dss_B          188 --------------ESHAGQIYCCTGFLAITSQLHQ--------VNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV  245 (331)
T ss_dssp             --------------CCCHHHHHHHHHHHHHTTCGGG--------SCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHH
T ss_pred             --------------CCcHHHHHHHHHHHHhccccch--------hhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHH
Confidence                          2344568899999998764321        2378999999999999999988754 2345568899


Q ss_pred             HHHHHHcCcCCCChHHHHHHHHHHHhcccCC-CccccccCcCCCCcccc
Q 028222          162 ISGLVAAEKTYSNCLAIRKATDFLLNIQCDD-GGWGESYLSCPNKLHMN  209 (212)
Q Consensus       162 l~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~d-Ggw~~~~~s~~~~~y~~  209 (212)
                      +.+|..+|...  ...++++++||++||+.+ |||+..+...++..+|+
T Consensus       246 l~~L~llg~~~--~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~  292 (331)
T 3dss_B          246 LASLKIIGRLH--WIDREKLRSFILACQDEETGGFADRPGDMVDPFHTL  292 (331)
T ss_dssp             HHHHHHTTCGG--GSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHH
T ss_pred             HHHHHHcCCcc--hhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHH
Confidence            99999998753  457899999999999987 99999988777665554

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=99.83  E-value=2.2e-20  Score=174.94  Aligned_cols=170  Identities=20%  Similarity=0.285  Sum_probs=123.5

Q ss_pred             CCCCCCccc-cccCC------------------CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc
Q 028222            3 RHISKGGWT-FSDKD------------------HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ   63 (212)
Q Consensus         3 ~~~~~Ggw~-~~~~~------------------~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q   63 (212)
                      .|++.|||+ |....                  ...+.+++|+.+|.+|..+....+.+ ..+.....++++++||+++|
T Consensus       493 ~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~-~~~~~~~~i~rAv~yL~~~Q  571 (732)
T 1w6k_A          493 MRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEH-RAAEIRETLTQGLEFCRRQQ  571 (732)
T ss_dssp             TCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTS-SHHHHHHHHHHHHHHHHHHS
T ss_pred             hcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccc-cchhhHHHHHHHHHHHHhhc
Confidence            488999996 54311                  12245779999999999876522211 01123578999999999999


Q ss_pred             cCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222           64 SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD  143 (212)
Q Consensus        64 ~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d  143 (212)
                      ++||||....+.                      .++..|+.++.+|..++.....   ..+.+.++|+++||++.|++|
T Consensus       572 ~~DGsW~g~wg~----------------------~~~Y~T~~al~AL~~aG~~~~~---~~~~~~i~rav~~Lls~Q~~D  626 (732)
T 1w6k_A          572 RADGSWEGSWGV----------------------CFTYGTWFGLEAFACMGQTYRD---GTACAEVSRACDFLLSRQMAD  626 (732)
T ss_dssp             CTTSCCCCSSBS----------------------SHHHHHHHHHHHHHHTTCCCBT---TBCCHHHHHHHHHHHTTCCTT
T ss_pred             CCCCCccCcCCC----------------------ccchHHHHHHHHHHHhCCcccc---cchhHHHHHHHHHHHHhcccC
Confidence            999999742110                      0122488899999888643211   112368999999999999999


Q ss_pred             CCcCCCC-----------ccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccC
Q 028222          144 GSWYGTW-----------GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYL  200 (212)
Q Consensus       144 G~w~g~~-----------~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~  200 (212)
                      |+|....           ..+....|++|+++|..+|..  ..+.++++++||+++|++||+|.+...
T Consensus       627 GGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~--~~~~i~r~v~wL~~~Q~~~Ggf~~~~~  692 (732)
T 1w6k_A          627 GGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENI  692 (732)
T ss_dssp             SCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSC
T ss_pred             CCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCCcc
Confidence            9996431           123467899999999999865  578999999999999999999996553

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=99.83  E-value=1.1e-20  Score=167.15  Aligned_cols=167  Identities=11%  Similarity=0.094  Sum_probs=126.0

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL   83 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~   83 (212)
                      |++.|||+-.+  ...+....|..+|.+|..++....      .....++++++||+++|++||||+....+        
T Consensus       134 Q~~dGGf~g~~--~~~~~i~~T~~Al~aL~~lg~~~~------~~~i~i~kav~~L~s~Q~~DGsf~~~~~G--------  197 (437)
T 2h6f_B          134 QSPEGGFGGGP--GQYPHLAPTYAAVNALCIIGTEEA------YDIINREKLLQYLYSLKQPDGSFLMHVGG--------  197 (437)
T ss_dssp             BCTTSSBBSST--TCCBCHHHHHHHHHHHHHHCCHHH------HTTSCHHHHHHHHHTTBCTTSCBBSSTTC--------
T ss_pred             CCCCCCcCCcc--CCCcchhHHHHHHHHHHHhCCccc------ccchHHHHHHHHHHHhCCCCCCeeecCCC--------
Confidence            78999999643  234677899999999999854100      01123789999999999999999842111        


Q ss_pred             cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHHH
Q 028222           84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWAI  162 (212)
Q Consensus        84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~al  162 (212)
                                   .+++..|..++.+|..++...        .+.++|+++||++.|++||||.+.-+ .++...|++||
T Consensus       198 -------------e~d~~~ty~A~~~L~llg~~~--------~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al  256 (437)
T 2h6f_B          198 -------------EVDVRSAYCAASVASLTNIIT--------PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGL  256 (437)
T ss_dssp             -------------CBSHHHHHHHHHHHHHTTCCC--------TTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHH
T ss_pred             -------------CccchhHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHH
Confidence                         123445777888887765421        13578999999999999999976543 34556799999


Q ss_pred             HHHHHcCcCCCChHHHHHHHHHHHhccc-CCCccccccCcCCCCcccc
Q 028222          163 SGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       163 ~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~-~dGgw~~~~~s~~~~~y~~  209 (212)
                      .+|..+|...  ...++++++||+++|. ++|||...+.--.+.+|+.
T Consensus       257 ~aL~~lg~~~--~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSf  302 (437)
T 2h6f_B          257 AALVILKRER--SLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSF  302 (437)
T ss_dssp             HHHHHHTCGG--GSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHH
T ss_pred             HHHHHcCCCC--cccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHH
Confidence            9999999763  4578999999999998 7999998888777777754

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=99.77  E-value=1.1e-17  Score=139.87  Aligned_cols=173  Identities=13%  Similarity=0.112  Sum_probs=119.9

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHh-cccCCCceeecCCCCChhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      |++.|||+.-.  ...+++..|+.|+.+|..+.+.      ..++++.++++++||++ .|++||+|....+-.+..+  
T Consensus        51 q~~dGgf~~f~--~~~~s~wlTa~v~~~l~~a~~~------~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~--  120 (277)
T 1qqf_A           51 KQPISAYAAFN--NRPPSTWLTAYVSRVFSLAANL------IAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEM--  120 (277)
T ss_dssp             BCTTSCBCSST--TSCCCHHHHHHHHHHHHHHTTT------SCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGG--
T ss_pred             cCCCCCccccC--CCCccHHHHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhh--
Confidence            78999999432  3357888999999999998652      13667899999999996 9999999974332111111  


Q ss_pred             hcCcccccchhhcc-cCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-------------------
Q 028222           83 LLNPIEFLDEVIIE-HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL-------------------  142 (212)
Q Consensus        83 ~l~~~e~~~~~~~d-~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~-------------------  142 (212)
                             .+..... .+.+..|+.++.+|...+....+ ...+..+.|+||++||.+.|++                   
T Consensus       121 -------~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~-~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~  192 (277)
T 1qqf_A          121 -------IGGFRNTKEADVSLTAFVLIALQEARDICEG-QVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNK  192 (277)
T ss_dssp             -------GGGGGSCTTHHHHHHHHHHHHHHHHHHHHTT-TCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTC
T ss_pred             -------cCCCCCCccCccchHHHHHHHHHhhhhcccc-CCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCC
Confidence                   0110000 12345699999999877542000 0112357899999999998764                   


Q ss_pred             --------------CCCcCCCCccc--hhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccc
Q 028222          143 --------------DGSWYGTWGVC--FIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       143 --------------dG~w~g~~~~~--~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~  198 (212)
                                    +|.|....+..  .+..|+++|++|..++..    +.+.+.++||+++|+++|||...
T Consensus       193 ~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~~~~~~v~wL~~qq~~~Ggw~sT  260 (277)
T 1qqf_A          193 LEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF----DSVPPVVRWLNDERYYGGGYGST  260 (277)
T ss_dssp             CCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT----TSHHHHHHHHHHCCCCTTSTTCH
T ss_pred             hHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh----hhHHHHHHHHHHccCCCCCeecc
Confidence                          44332332222  567899999999998753    36899999999999999999864

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=99.74  E-value=7.7e-17  Score=136.89  Aligned_cols=173  Identities=13%  Similarity=0.114  Sum_probs=119.4

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHh-cccCCCceeecCCCCChhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      |++.|||+.-.  ...+++..||.|+.+|..+.+.      ..++++.++++++||++ .|++||+|....+.....+  
T Consensus        67 q~~dGgf~~f~--~~~~s~wlTa~v~~~l~~a~~~------~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~--  136 (310)
T 2wy7_A           67 RQPSSAFAAFV--KRAPSTWLTAYVVKVFSLAVNL------IAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEM--  136 (310)
T ss_dssp             BCTTSCBCSST--TSCCCHHHHHHHHHHHHHHTTT------SCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGG--
T ss_pred             cCCCCCcccCC--CCCccHHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhh--
Confidence            78999999432  2457888999999999998652      13667899999999996 9999999975332111111  


Q ss_pred             hcCcccccchhhcc-cCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-------------------
Q 028222           83 LLNPIEFLDEVIIE-HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL-------------------  142 (212)
Q Consensus        83 ~l~~~e~~~~~~~d-~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~-------------------  142 (212)
                             .+..... .+.+..|+.++.+|...+..... ...+..+.|+||++||.+.|++                   
T Consensus       137 -------~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~-~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~  208 (310)
T 2wy7_A          137 -------IGGLRNNNEKDMALTAFVLISLQEAKDICEE-QVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGR  208 (310)
T ss_dssp             -------GGGGTTCSCHHHHHHHHHHHHHHHHHHHHTT-TCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTC
T ss_pred             -------cCCcccccccccchHHHHHHHHHhccccccc-CCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCC
Confidence                   0110000 12345699999999877542000 0112357899999999998774                   


Q ss_pred             --------------CCCcCCCCccc--hhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccc
Q 028222          143 --------------DGSWYGTWGVC--FIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       143 --------------dG~w~g~~~~~--~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~  198 (212)
                                    +|.|....+..  .+..|++||++|.+++..    +.+.+.++||+++|+++|||...
T Consensus       209 ~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~~~~~~v~wL~~qq~~~Ggw~sT  276 (310)
T 2wy7_A          209 LKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF----DFVPPVVRWLNEQRYYGGGYGST  276 (310)
T ss_dssp             CCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT----TTHHHHHHHHHHTTCCCCSTTCH
T ss_pred             cHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCCh----hhHHHHHHHHHHccCCCCCeecc
Confidence                          33332222222  567899999999998753    46899999999999999999853

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=99.71  E-value=4.1e-17  Score=141.91  Aligned_cols=153  Identities=10%  Similarity=-0.014  Sum_probs=112.0

Q ss_pred             CCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccC
Q 028222           19 LPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHD   98 (212)
Q Consensus        19 ~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~   98 (212)
                      .|.+.+|..+|.+|..+.....      ..  ..+++++||.++|++||||.....                    +...
T Consensus       119 ~~~v~~T~~Al~~L~~lg~~~~------~i--d~~~~~~fL~~~Q~~DGSf~g~~~--------------------wGe~  170 (377)
T 1n4q_B          119 SGHIAMTYTGLSCLIILGDDLS------RV--DKEACLAGLRALQLEDGSFCAVPE--------------------GSEN  170 (377)
T ss_dssp             CCCHHHHHHHHHHHHHTTCCST------TS--CHHHHHHHHHHHBCTTSCBCSSTT--------------------CCCC
T ss_pred             CCCHHHHHHHHHHHHHhCcccc------hh--hHHHHHHHHHHhcCCCCCeeeccC--------------------CCcc
Confidence            3678899999999999864221      11  237999999999999999974210                    0112


Q ss_pred             ccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHHHHHHHHcCcCCCC--h
Q 028222           99 YVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWAISGLVAAEKTYSN--C  175 (212)
Q Consensus        99 ~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~al~aL~~~g~~~~~--~  175 (212)
                      ++.-|+.|+.+|..++...        ...++|+++||++.|+.||||+...+ .++.-.|.+|+.+|..++.....  .
T Consensus       171 DirftY~Al~~l~llg~~~--------~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~  242 (377)
T 1n4q_B          171 DMRFVYCASCICYMLNNWS--------GMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSE  242 (377)
T ss_dssp             BHHHHHHHHHHHHHTTCGG--------GSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCH
T ss_pred             hhHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccch
Confidence            3345777877777765421        23589999999999999999965432 34455688999999888865311  1


Q ss_pred             HHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222          176 LAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       176 ~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~  209 (212)
                      ..++++++||+++|  +|||...+.--.+.+|..
T Consensus       243 ~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSf  274 (377)
T 1n4q_B          243 KELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSF  274 (377)
T ss_dssp             HHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHH
T ss_pred             hhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHH
Confidence            27999999999999  899998888777887753

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=99.70  E-value=4.7e-16  Score=135.09  Aligned_cols=176  Identities=16%  Similarity=0.140  Sum_probs=117.7

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      .|++.|||++-...  .++...|+.|+++|..+.+.      ..+++..++++++||+++|++||+|..-.......+. 
T Consensus       103 ~Q~~dGgf~~~~~~--~~~~~lTa~v~~~l~~a~~~------~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~-  173 (367)
T 1hzf_A          103 FRKADGSYAAWLSR--DSSTWLTAFVLKVLSLAQEQ------VGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQ-  173 (367)
T ss_dssp             TBCTTSCBCSSTTS--CCCHHHHHHHHHHHHHHGGG------TCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGG-
T ss_pred             ccCCCCCeeccCCC--CCcHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHHHhhccCCCccccccccccccc-
Confidence            47899999943222  45778999999999998753      1356789999999999999999999743221111110 


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCc-cc---hhHHHHHHHHHHHHHHhc--cc---------------
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPK-HK---KNEVNNFITNGVKFTEDS--QK---------------  141 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~-~~---~~~i~~~i~ra~~~L~~~--Q~---------------  141 (212)
                              +....+++.+..|+.++.+|...+...+. ..   ..+....|+||++||.+.  ++               
T Consensus       174 --------gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~  245 (367)
T 1hzf_A          174 --------GGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALT  245 (367)
T ss_dssp             --------GGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred             --------CCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHH
Confidence                    10011234566799999999876532111 00   022456899999999776  21               


Q ss_pred             ---------------------cCCC---cCCC--------------------Cc--c-chhhHHHHHHHHHHHcCcCCCC
Q 028222          142 ---------------------LDGS---WYGT--------------------WG--V-CFIYSTWWAISGLVAAEKTYSN  174 (212)
Q Consensus       142 ---------------------~dG~---w~g~--------------------~~--~-~~~~~T~~al~aL~~~g~~~~~  174 (212)
                                           .+|+   |...                    |+  . ..+..|++||++|.+.+..   
T Consensus       246 l~~~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~~---  322 (367)
T 1hzf_A          246 LTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGK---  322 (367)
T ss_dssp             HTTCCHHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTCS---
T ss_pred             hcCCcHHHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccCc---
Confidence                                 1332   4210                    11  1 1467899999999987543   


Q ss_pred             hHHHHHHHHHHHhcccCCCccccc
Q 028222          175 CLAIRKATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       175 ~~~i~~a~~~Ll~~Q~~dGgw~~~  198 (212)
                      .+.+.+.++||+++|+.+|||+..
T Consensus       323 ~~~~~~iv~WL~~qrn~~Ggw~sT  346 (367)
T 1hzf_A          323 AEMADQASAWLTRQGSFQGGFRST  346 (367)
T ss_dssp             SHHHHHHHHHHHHHTTSTTCSCSH
T ss_pred             hhhhHHHHHHHHhCcCCCCCcccH
Confidence            468999999999999999999864

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=99.65  E-value=1.1e-15  Score=136.49  Aligned_cols=176  Identities=14%  Similarity=0.037  Sum_probs=125.0

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      .|++.|||+-.......+.+.+|..+|.+|..+...++.+. ....+..++++++||.++|++||||..-..+       
T Consensus       121 ~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~-~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wG-------  192 (520)
T 3q7a_B          121 FLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGG-WKDLAAARQSIYEFFMRCKRPDGGFVVCEGG-------  192 (520)
T ss_dssp             TBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSB-HHHHHHTHHHHHHHHHHHBCTTSCBBSSTTC-------
T ss_pred             HcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchh-hhhhhhHHHHHHHHHHHHhCCCCCEecCCCC-------
Confidence            48899999864423457889999999999999977543210 0011122779999999999999999742111       


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCC-------------
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGT-------------  149 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~-------------  149 (212)
                                    ..++..|..|+.+|..++...        ...++|+++||++.|+.||||+..             
T Consensus       193 --------------e~Dir~TY~Al~~L~lLg~~~--------~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~  250 (520)
T 3q7a_B          193 --------------EVDVRGTYCLLVVATLLDIIT--------PELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSA  250 (520)
T ss_dssp             --------------CBCHHHHHHHHHHHHHHTCCC--------HHHHTTHHHHHHTTBCTTSSBCSCEEEEC--------
T ss_pred             --------------CchHHHHHHHHHHHHHcCCCC--------hHHHHHHHHHHHHhcCCCCCccCcccccccccccccc
Confidence                          123445888888888776421        257899999999999999999651             


Q ss_pred             -----------CccchhhHHHHHHHHHHHcCcCCC----ChHHHHHHHHHHHhccc---CCCccccccCcCCCCccc
Q 028222          150 -----------WGVCFIYSTWWAISGLVAAEKTYS----NCLAIRKATDFLLNIQC---DDGGWGESYLSCPNKLHM  208 (212)
Q Consensus       150 -----------~~~~~~~~T~~al~aL~~~g~~~~----~~~~i~~a~~~Ll~~Q~---~dGgw~~~~~s~~~~~y~  208 (212)
                                 ....+.-.|.+|+.+|..++..+.    ....+++.++||..+|.   ++|||..++.--.+.+|.
T Consensus       251 ~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYS  327 (520)
T 3q7a_B          251 FPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYS  327 (520)
T ss_dssp             ----CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHH
T ss_pred             ccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhh
Confidence                       233344457888888888776320    12357899999999996   569999888777777764

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=99.62  E-value=2.4e-16  Score=136.92  Aligned_cols=151  Identities=17%  Similarity=0.105  Sum_probs=103.1

Q ss_pred             CCCccccccCCCCCCCCccHHHHHHHHHHhhc---CCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            6 SKGGWTFSDKDHGLPVSDCSSESFVCCLHLST---MPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         6 ~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~---~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      -++||.+.++...+|++    .++..|-....   ..+.  -.....+.|++++++|+++|++||||+.|...+      
T Consensus        50 ~P~Gc~EQ~~s~~~P~~----~v~~~l~~~~~w~~~~~~--~~~~~~~~i~~g~~~ll~~Q~~dGgf~~~~~~~------  117 (367)
T 1hzf_A           50 LPRGCGEQTMIYLAPTL----AASRYLDKTEQWSTLPPE--TKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRD------  117 (367)
T ss_dssp             CCCSSHHHHHHHHHHHH----HHHHHHHHTTCSTTSCTT--HHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSC------
T ss_pred             CCCCCHHHHHHHHHHHH----HHHHHHHHhhhcccCChh--HHHHHHHHHHHHHHHHHhccCCCCCeeccCCCC------
Confidence            36777776655545543    33444433211   1100  011234679999999999999999999775432      


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCcc----------
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV----------  152 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~----------  152 (212)
                                     ++...|++|+.+|..+...... .    ...++|+++||++.|++||+|.+.+..          
T Consensus       118 ---------------~~~~lTa~v~~~l~~a~~~~~v-~----~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~  177 (367)
T 1hzf_A          118 ---------------SSTWLTAFVLKVLSLAQEQVGG-S----PEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLV  177 (367)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHGGGTCC-C----HHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGS
T ss_pred             ---------------CcHHHHHHHHHHHHHHHHHhCC-C----HHHHHHHHHHHHHhhccCCCcccccccccccccCCCC
Confidence                           2233699999999998754321 1    468999999999999999999876532          


Q ss_pred             ---chhhHHHHHHHHHHHcCcCC----------CChHHHHHHHHHHHhc
Q 028222          153 ---CFIYSTWWAISGLVAAEKTY----------SNCLAIRKATDFLLNI  188 (212)
Q Consensus       153 ---~~~~~T~~al~aL~~~g~~~----------~~~~~i~~a~~~Ll~~  188 (212)
                         ...+.|++++.+|.+.|...          ...+.|+||++||+++
T Consensus       178 ~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~  226 (367)
T 1hzf_A          178 GNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK  226 (367)
T ss_dssp             STTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence               23567899999998876421          1246899999999776

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=99.61  E-value=3.7e-15  Score=124.49  Aligned_cols=116  Identities=17%  Similarity=0.083  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHH
Q 028222           49 PERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNF  128 (212)
Q Consensus        49 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~  128 (212)
                      .+.|++++.+|+++|++||||+.|...                     ++++..|+.|+.+|..+...... +    ...
T Consensus        37 ~~~i~~g~~~~l~~q~~dGgf~~f~~~---------------------~~s~wlTa~v~~~l~~a~~~~~v-~----~~~   90 (277)
T 1qqf_A           37 LELIKKGYTQQLAFKQPISAYAAFNNR---------------------PPSTWLTAYVSRVFSLAANLIAI-D----SQV   90 (277)
T ss_dssp             HHHHHHHHHHHHTTBCTTSCBCSSTTS---------------------CCCHHHHHHHHHHHHHHTTTSCC-C----HHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCccccCCC---------------------CccHHHHHHHHHHHHHHhhcCCC-C----HHH
Confidence            456889999999999999999977532                     23455799999999988653221 1    368


Q ss_pred             HHHHHHHHHh-ccccCCCcCCCCccc--------------hhhHHHHHHHHHHHcC------cCCCChHHHHHHHHHHHh
Q 028222          129 ITNGVKFTED-SQKLDGSWYGTWGVC--------------FIYSTWWAISGLVAAE------KTYSNCLAIRKATDFLLN  187 (212)
Q Consensus       129 i~ra~~~L~~-~Q~~dG~w~g~~~~~--------------~~~~T~~al~aL~~~g------~~~~~~~~i~~a~~~Ll~  187 (212)
                      +.|+++||++ .|++||+|.+.|...              ..+.|++++.+|...+      .+. ..+.|++|++||.+
T Consensus        91 i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~-~~~~i~~A~~~L~~  169 (277)
T 1qqf_A           91 LCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNS-LPGSINKAGEYLEA  169 (277)
T ss_dssp             HHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCc-hHHHHHHHHHHHHH
Confidence            9999999996 999999998776422              2456899999998884      332 47899999999999


Q ss_pred             cccC
Q 028222          188 IQCD  191 (212)
Q Consensus       188 ~Q~~  191 (212)
                      +|+.
T Consensus       170 ~~~~  173 (277)
T 1qqf_A          170 SYLN  173 (277)
T ss_dssp             HHTT
T ss_pred             Hhcc
Confidence            9874

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=99.60  E-value=5.5e-15  Score=125.43  Aligned_cols=115  Identities=20%  Similarity=0.113  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHH
Q 028222           50 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI  129 (212)
Q Consensus        50 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i  129 (212)
                      +.|++++.+|+++|++||||+.|...                     ++++..|+.|+.+|..+...... +    ...+
T Consensus        54 ~~i~~g~~~~l~~q~~dGgf~~f~~~---------------------~~s~wlTa~v~~~l~~a~~~~~v-~----~~~i  107 (310)
T 2wy7_A           54 ELIKKGYTQQLAFRQPSSAFAAFVKR---------------------APSTWLTAYVVKVFSLAVNLIAI-D----SQVL  107 (310)
T ss_dssp             HHHHHHHHHHHTTBCTTSCBCSSTTS---------------------CCCHHHHHHHHHHHHHHTTTSCC-C----HHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccCCCC---------------------CccHHHHHHHHHHHHHHHhcCCC-C----HHHH
Confidence            56889999999999999999977532                     23445799999999988653221 1    3689


Q ss_pred             HHHHHHHHh-ccccCCCcCCCCccc--------------hhhHHHHHHHHHHHcC------cCCCChHHHHHHHHHHHhc
Q 028222          130 TNGVKFTED-SQKLDGSWYGTWGVC--------------FIYSTWWAISGLVAAE------KTYSNCLAIRKATDFLLNI  188 (212)
Q Consensus       130 ~ra~~~L~~-~Q~~dG~w~g~~~~~--------------~~~~T~~al~aL~~~g------~~~~~~~~i~~a~~~Ll~~  188 (212)
                      .|+++||++ .|++||+|.+.|+..              ..+.|++++.+|..++      .+. ..+.|++|++||.++
T Consensus       108 ~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~-~~~~i~~A~~~L~~~  186 (310)
T 2wy7_A          108 CGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNS-LPGSITKAGDFLEAN  186 (310)
T ss_dssp             HHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcc-hHHHHHHHHHHHHHH
Confidence            999999996 999999998776432              2456999999999884      332 478999999999999


Q ss_pred             ccC
Q 028222          189 QCD  191 (212)
Q Consensus       189 Q~~  191 (212)
                      |++
T Consensus       187 ~~~  189 (310)
T 2wy7_A          187 YMN  189 (310)
T ss_dssp             GGG
T ss_pred             hhc
Confidence            874

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=99.50  E-value=5.7e-14  Score=118.92  Aligned_cols=131  Identities=17%  Similarity=0.073  Sum_probs=89.4

Q ss_pred             HHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHH
Q 028222           55 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK  134 (212)
Q Consensus        55 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~  134 (212)
                      .++.|+..|+++|||+-... -...   ....    +.....+.+.+.|+.+|++|++.....   +.+++.+++.||++
T Consensus        36 ~Ad~~l~~Q~~~GGW~kn~d-~~~~---~~~~----~~~~~~t~DnddTa~vl~~Larv~~~~---~~~~y~~Ai~Rgl~  104 (332)
T 1gxm_A           36 RADVVLSYQQNNGGWPKNLD-YNSV---GNGG----GGNESGTIDNGATITEMVFLAEVYKSG---GNTKYRDAVRKAAN  104 (332)
T ss_dssp             GHHHHHHTCCTTSCCCSCCC-TTTC---CCCC----CCCSCEECGGGTTHHHHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcCCCCCCccee-cccc---cccC----CCCCCCCccCccHHHHHHHHHHHhccc---cchHHHHHHHHHHH
Confidence            38899999999999983211 0000   0000    001112345678999999999876532   12567899999999


Q ss_pred             HHHhccccCCCcCCCCcc--------ch-hhHHHHHHHHHHHcCc-----C---------CCChHHHHHHHHHHHhcccC
Q 028222          135 FTEDSQKLDGSWYGTWGV--------CF-IYSTWWAISGLVAAEK-----T---------YSNCLAIRKATDFLLNIQCD  191 (212)
Q Consensus       135 ~L~~~Q~~dG~w~g~~~~--------~~-~~~T~~al~aL~~~g~-----~---------~~~~~~i~~a~~~Ll~~Q~~  191 (212)
                      ||+++|.++|||+.-+-.        .+ -..|+-+|..|..++.     .         .+..++++||++||++.|..
T Consensus       105 wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~  184 (332)
T 1gxm_A          105 FLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWK  184 (332)
T ss_dssp             HHHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCE
T ss_pred             HHHhccCCCCCccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCc
Confidence            999999999999643211        11 1357778888877642     1         22468999999999999999


Q ss_pred             CCccc
Q 028222          192 DGGWG  196 (212)
Q Consensus       192 dGgw~  196 (212)
                      +|||-
T Consensus       185 dggw~  189 (332)
T 1gxm_A          185 QNGVL  189 (332)
T ss_dssp             ETTEE
T ss_pred             cCCCc
Confidence            99864

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=99.48  E-value=1.7e-13  Score=119.12  Aligned_cols=146  Identities=12%  Similarity=0.125  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHhcccCCCceeecCCCCChh----hhhh---------cCcccc--cc--h-hhcccCccchHHHHHHHHH
Q 028222           50 ERFYDAANFMLYIQSKTGGITGWEPAGAPS----WIEL---------LNPIEF--LD--E-VIIEHDYVECTASALKAMT  111 (212)
Q Consensus        50 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~----~~~~---------l~~~e~--~~--~-~~~d~~~~~~Ta~al~aL~  111 (212)
                      +..+++++.|++.|+++|||+-... ....    -...         ..+...  ..  . ....+.+.+.|+.+|++|.
T Consensus        81 ~~A~~iAd~ll~~Q~~~GGW~kn~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~  159 (408)
T 1r76_A           81 KAARHVADVIVSFQTPAGGWGKNQP-RDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLA  159 (408)
T ss_dssp             HHHHHHHHHHHHHCCTTSCCCSSCC-SSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHccccCCCCCCccc-cccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHH
Confidence            4579999999999999999973211 0000    0000         000000  00  0 0112345678999999999


Q ss_pred             HHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccc--------h-hhHHHHHHHHHHHcCcC-----------
Q 028222          112 LFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVC--------F-IYSTWWAISGLVAAEKT-----------  171 (212)
Q Consensus       112 ~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~--------~-~~~T~~al~aL~~~g~~-----------  171 (212)
                      ++.........+.+.+++.||++||+++|.+||||+.-+-..        + ...|+-+|..|..++..           
T Consensus       160 rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~  239 (408)
T 1r76_A          160 QVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAI  239 (408)
T ss_dssp             HHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHH
T ss_pred             HHHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhh
Confidence            976531101235678999999999999999999996533111        1 13577777777666541           


Q ss_pred             -CCChHHHHHHHHHHHhcccC-CCccc
Q 028222          172 -YSNCLAIRKATDFLLNIQCD-DGGWG  196 (212)
Q Consensus       172 -~~~~~~i~~a~~~Ll~~Q~~-dGgw~  196 (212)
                       .+..++++||++||++.|.. ||.|-
T Consensus       240 ~~~~~~av~Rgi~~Ll~~Qe~~dGsw~  266 (408)
T 1r76_A          240 RTRALEATNAAIHCIVETQVVQDGKRL  266 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCEETTEEC
T ss_pred             hhhHHHHHHHHHHHHHHhhcccCCccc
Confidence             12468999999999999999 99875

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=99.46  E-value=9.5e-13  Score=126.23  Aligned_cols=172  Identities=13%  Similarity=0.114  Sum_probs=115.5

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHh-cccCCCceeecCCCCChhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      |++.|||++-.  ...++...||.|+.+|..+.+.      ..+++..+.++++||++ +|++||+|.....-.+..+. 
T Consensus       312 Q~~DGsfs~w~--~~~~s~wlTAyv~~~l~~a~~~------~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~-  382 (915)
T 2hr0_B          312 RQPSSAFAAFV--KRAPSTWLTAYVVKVFSLAVNL------IAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI-  382 (915)
T ss_dssp             CCTTTCCBSSS--SSCBCHHHHHHHHHHHHTTTTT------SCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCC-
T ss_pred             hcCCCCccccC--CCCCcceehHHHHHHHHHhhhc------CCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhc-
Confidence            78999999533  2356788999999999988642      14667999999999995 99999999743221100000 


Q ss_pred             hcCcccccchhhcc-cCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-------------------
Q 028222           83 LLNPIEFLDEVIIE-HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL-------------------  142 (212)
Q Consensus        83 ~l~~~e~~~~~~~d-~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~-------------------  142 (212)
                              +..... .+.+..|+.+|.+|...+..... ...+...+++||++||.+.+.+                   
T Consensus       383 --------gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~-~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~  453 (915)
T 2hr0_B          383 --------GGLRNNNEKDMALTAFVLISLQEAKDICEE-QVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGR  453 (915)
T ss_dssp             --------CSCCCCTTHHHHHHHHHHHHHHHHTTTSTT-TCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTC
T ss_pred             --------CCccCccccccccHHHHHHHHHhccccccc-CcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCC
Confidence                    000000 12344689999999877532000 0112457899999999887654                   


Q ss_pred             --------------CCCcCCCCccc--hhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccc
Q 028222          143 --------------DGSWYGTWGVC--FIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGE  197 (212)
Q Consensus       143 --------------dG~w~g~~~~~--~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~  197 (212)
                                    +|.|...++..  .+..|++||++|..++..    ..+.+.++||+++|+.+|||..
T Consensus       454 ~a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~----~~~~~~v~wL~~qq~~~Ggw~S  520 (915)
T 2hr0_B          454 LKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF----DFVPPVVRWLNEQRYYGGGYGS  520 (915)
T ss_dssp             CCHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT----TTHHHHHHHHHTCCCSSSSCCS
T ss_pred             hHHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh----hhHHHHHHHHHhcccCCCCccc
Confidence                          33321222222  456899999999998764    2588899999999999999985

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=99.34  E-value=4.4e-12  Score=126.42  Aligned_cols=171  Identities=10%  Similarity=0.062  Sum_probs=114.5

Q ss_pred             CCCCCCccc-cccCC-CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222            3 RHISKGGWT-FSDKD-HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW   80 (212)
Q Consensus         3 ~~~~~Ggw~-~~~~~-~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~   80 (212)
                      .|++.|||+ |...+ +..++...||.++++|..+.+.      ..+.+..+.++++||+++|++||+|.....--+..+
T Consensus       995 ~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~------~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m 1068 (1451)
T 4acq_A          995 YKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAY------IFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAI 1068 (1451)
T ss_dssp             GBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTT------SCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGG
T ss_pred             hcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhh------cccCHHHHHHHHHHHHhhcccCCcccccCcccchhh
Confidence            478999999 53221 1356788999999999998652      235678999999999999999999973321100000


Q ss_pred             hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcc--------------------
Q 028222           81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ--------------------  140 (212)
Q Consensus        81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q--------------------  140 (212)
                               -+.   ..+++..||.+|.+|...+..  .     ..++++||++||.+..                    
T Consensus      1069 ---------~gg---~~~~~~lTAyvl~aL~~~g~~--~-----~~~~i~~A~~~L~~~~~~~~~~~~~~~~y~~AllAy 1129 (1451)
T 4acq_A         1069 ---------KGG---VEDEVTLSAYITIALLEIPLT--V-----THPVVRNALFCLESAWKTAQEGDHGSHVYTKALLAY 1129 (1451)
T ss_dssp             ---------CCS---CSCHHHHHHHHHHHHHHTTCC--T-----TCHHHHHHHHHHHHHHHHHTSSCSSSTHHHHHHHHH
T ss_pred             ---------cCC---CCCCccchHHHHHHHHHcCCC--C-----CCHHHHHHHHHHHHhhhhcccccccCChHHHHHHHH
Confidence                     000   013455699999999887531  1     1356788888887551                    


Q ss_pred             ----------------------ccCCC---cCCC-----------C---ccchhhHHHHHHHHHHHcCcCC--CChHHHH
Q 028222          141 ----------------------KLDGS---WYGT-----------W---GVCFIYSTWWAISGLVAAEKTY--SNCLAIR  179 (212)
Q Consensus       141 ----------------------~~dG~---w~g~-----------~---~~~~~~~T~~al~aL~~~g~~~--~~~~~i~  179 (212)
                                            ..+|+   |...           |   ....+..|++||+||..++..+  .+.+.+.
T Consensus      1130 Alal~g~~~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~ 1209 (1451)
T 4acq_A         1130 AFALAGNQDKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSAT 1209 (1451)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHH
T ss_pred             HHHhcCChhHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccccchhhHH
Confidence                                  11333   5211           1   0123557999999999987421  1245788


Q ss_pred             HHHHHHHhcccCCCccccc
Q 028222          180 KATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       180 ~a~~~Ll~~Q~~dGgw~~~  198 (212)
                      +.++||.+.|+.+|||...
T Consensus      1210 ~iv~WL~~qr~~~Ggf~ST 1228 (1451)
T 4acq_A         1210 NIVKWITKQQNAQGGFSST 1228 (1451)
T ss_dssp             TTHHHHTTCCCTTSCCSSH
T ss_pred             HHHHHHHHcCCCCCCcccH
Confidence            8999999999999999863

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.33  E-value=3.2e-12  Score=111.21  Aligned_cols=142  Identities=11%  Similarity=0.059  Sum_probs=98.0

Q ss_pred             cHHHHHHHHHHHHhcccCC----CceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchh
Q 028222           48 EPERFYDAANFMLYIQSKT----GGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKN  123 (212)
Q Consensus        48 ~~~~i~~av~~Ll~~Q~~d----Ggw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~  123 (212)
                      ..+..++.++||.++|.++    |||+.....       .      ++....+.+++..|..||++|+.++..  ...  
T Consensus        51 ~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~-------~------~~g~~~~~~hl~~Ty~Al~~L~ilg~~--~~~--  113 (390)
T 3dra_B           51 TNQELIYYRNFIINQFMIENNQIISFRSTHYF-------Q------KTNQKYDCPNLSSTLFALYNLLILKSP--YHT--  113 (390)
T ss_dssp             CHHHHHHHHHHHHHHHEEECSSCEEECSSGGG-------G------GSCTTTSCCBHHHHHHHHHHHHHTTCC--GGG--
T ss_pred             chHHHHHHHHHHHHHhccccCCCCCcCCCccC-------C------CCCCccCcccHHHHHHHHHHHHHhCch--hhc--
Confidence            4566788999999997653    888743210       0      000012457788899999999988642  000  


Q ss_pred             HHHHHHHHHHHHHHhccc---c-CCCcC-----C-------CCccchhhHHHHHHHHHHHcCcCCC-----------ChH
Q 028222          124 EVNNFITNGVKFTEDSQK---L-DGSWY-----G-------TWGVCFIYSTWWAISGLVAAEKTYS-----------NCL  176 (212)
Q Consensus       124 ~i~~~i~ra~~~L~~~Q~---~-dG~w~-----g-------~~~~~~~~~T~~al~aL~~~g~~~~-----------~~~  176 (212)
                      .+  -.++.++||.+.|+   + ||+|.     +       .++...+..+.+|+..+..++....           ...
T Consensus       114 ~v--dr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~i  191 (390)
T 3dra_B          114 II--NRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDI  191 (390)
T ss_dssp             TC--CHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCC
T ss_pred             cc--cHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccc
Confidence            01  13567999999998   7 89996     2       2566677888888888888776530           034


Q ss_pred             HHHHHHHHHHhcccCCCccccccCcCCCCccc
Q 028222          177 AIRKATDFLLNIQCDDGGWGESYLSCPNKLHM  208 (212)
Q Consensus       177 ~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~  208 (212)
                      .++++++||++||+.||||+..+..-+-.-||
T Consensus       192 d~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~T  223 (390)
T 3dra_B          192 DLISLQQFILDRININGGFSSTIMDESHLGFT  223 (390)
T ss_dssp             CHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHH
T ss_pred             cHHHHHHHHHHhcCCCCCcCCCCCcccccchh
Confidence            58999999999999999999888754444343

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*

Probab=99.29  E-value=1.5e-11  Score=106.70  Aligned_cols=125  Identities=18%  Similarity=0.113  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHH
Q 028222           26 SESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTAS  105 (212)
Q Consensus        26 a~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~  105 (212)
                      +.+++||...+.            ..-.+.|.-|+..|+.||++-                            +||++|+
T Consensus       118 sL~vLALC~~~~------------~v~~~~v~kLl~~~~~~g~~~----------------------------sVDT~AM  157 (399)
T 2pmv_A          118 SLAILALCQKNS------------EATLPIAVRFAKTLLANSSPF----------------------------NVDTGAM  157 (399)
T ss_dssp             HHHHHHHHHHCH------------HHHHHHHHHHHHHHHHCCSCC----------------------------CHHHHHH
T ss_pred             HHHHHHHHhcCC------------CCCHHHHHHHHHHHHccCCcc----------------------------cchHHHH
Confidence            555666665532            335666777778888886432                            4778999


Q ss_pred             HHHHHHHHHh---hCCc-cchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcCcCCCChHHHHHH
Q 028222          106 ALKAMTLFQK---LYPK-HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKA  181 (212)
Q Consensus       106 al~aL~~~~~---~~~~-~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a  181 (212)
                      +++||..+..   .... ..+.++..++++++.+|++.|++||+|+      ..|.|++|++||...+..+...-...++
T Consensus       158 a~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG------n~yST~LA~QAL~~~~~~~~~~W~c~~a  231 (399)
T 2pmv_A          158 ATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG------DIYSTGLAMQALSVTPEPSKKEWNCKKT  231 (399)
T ss_dssp             HHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS------SHHHHHHHHHHHHHCSSCCSSCCCHHHH
T ss_pred             HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc------ccccHHHHHHHHHhcCCCccccccHHHH
Confidence            9999999876   2111 1234578999999999999999999993      4799999999999998753222278999


Q ss_pred             HHHHHhcccCCCcccc
Q 028222          182 TDFLLNIQCDDGGWGE  197 (212)
Q Consensus       182 ~~~Ll~~Q~~dGgw~~  197 (212)
                      ++||++ |..||+|+.
T Consensus       232 l~~l~~-q~~~G~F~n  246 (399)
T 2pmv_A          232 TDMILN-EIKQGKFHN  246 (399)
T ss_dssp             HHHHHH-HHTTTTTCS
T ss_pred             HHHHHH-HhhCCCcCC
Confidence            999999 999999984

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=99.28  E-value=1.5e-11  Score=121.87  Aligned_cols=166  Identities=13%  Similarity=0.077  Sum_probs=111.7

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL   83 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~   83 (212)
                      |++.|||++-.  ...++...||.++.+|..+.+.     +..++++.+.++++||.+.|++||.|..-....+..+   
T Consensus       885 q~~dGgf~~f~--~~~~s~~lTa~v~~~l~~a~~~-----~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~---  954 (1325)
T 2pn5_A          885 RQTDGSFGLWE--TTNGSVFLTAFVGTSMQTAVKY-----ISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEM---  954 (1325)
T ss_dssp             BCTTSCBCSSS--SSCCCHHHHHHHHHHHHHHTTT-----CSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHH---
T ss_pred             CCCCCCeeccC--CCCCCeeehHHHHHHHHHHHhh-----EEcCCHHHHHHHHHHHHhhhccCCCccccccccChhh---
Confidence            78999999533  2357888999999999998652     2246678999999999999999999963221111110   


Q ss_pred             cCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-CCCcCC--------------
Q 028222           84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL-DGSWYG--------------  148 (212)
Q Consensus        84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~-dG~w~g--------------  148 (212)
                            .+.  ++ .....|+.+|.+|...+...     .+....++||++||.+.|+. ++.|.-              
T Consensus       955 ------~g~--~~-~~~~~tayvl~aL~~~g~~~-----~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~ 1020 (1325)
T 2pn5_A          955 ------QGG--LR-NGVALTSYVLMALLENDIAK-----AKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTM 1020 (1325)
T ss_dssp             ------HCC--SS-TTHHHHHHHHHHHHTCHHHH-----HHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTT
T ss_pred             ------cCc--cc-CCccccHHHHHHHhhCcccc-----cccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCch
Confidence                  000  00 12234677777776543221     01135688899999888776 565520              


Q ss_pred             ---------------------CCc-cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccc
Q 028222          149 ---------------------TWG-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGE  197 (212)
Q Consensus       149 ---------------------~~~-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~  197 (212)
                                           .|. ......|++||++|...+.    .+.+.+.++||++.|+.+|+|..
T Consensus      1021 ~~~~l~~L~~~~~~~~~~~~~~w~~~s~ve~tA~aLlall~~~~----~~~~~~~v~wL~~q~~~~g~w~s 1087 (1325)
T 2pn5_A         1021 KEEALNKLIDMSFIDADKNERFWNTTNPIETTAYALLSFVMAEK----YTDGIPVMNWLVNQRYVTGSFPS 1087 (1325)
T ss_dssp             HHHHHHHHHHTCEEETTTTEEECCSSSHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCCTTSSCSS
T ss_pred             HHHHHHHHHhhhhhccCCCcccCCCCCchHHHHHHHHHHhhhcc----chhhHHHHHHHHhccCCCCCccc
Confidence                                 010 1234578999999998764    34778899999999999999984

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=99.24  E-value=3.6e-11  Score=119.90  Aligned_cols=116  Identities=14%  Similarity=0.034  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHH
Q 028222           50 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI  129 (212)
Q Consensus        50 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i  129 (212)
                      +.|++++++|+++|++||||+.|...+.                 -++++.-.||+|+..|+.+.....-.     ...+
T Consensus       983 ~~i~~g~~~ll~~q~~dGgf~~f~~~~~-----------------~~~~s~wlTAyv~~~l~~a~~~~~v~-----~~~l 1040 (1451)
T 4acq_A          983 GYLNTGYQRQLNYKHYDGSYSTFGERYG-----------------RNQGNTWLTAFVLKTFAQARAYIFID-----EAHI 1040 (1451)
T ss_dssp             HHHHHHHHHHGGGBCTTSCBCSSTTGGG-----------------CCCCCHHHHHHHHHHHHHHTTTSCCC-----THHH
T ss_pred             HHHHHHHHHHHhhcCCCCCeeeccCCCC-----------------CCCCchhHHHHHHHHHHHhhhhcccC-----HHHH
Confidence            3478999999999999999997743110                 01233446999999999876432211     3689


Q ss_pred             HHHHHHHHhccccCCCcCC--CCc--------cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhc
Q 028222          130 TNGVKFTEDSQKLDGSWYG--TWG--------VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNI  188 (212)
Q Consensus       130 ~ra~~~L~~~Q~~dG~w~g--~~~--------~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~  188 (212)
                      .+|++||+++|++||+|..  .|.        ....+.|++++.||.++|... ..+.+++|++||.++
T Consensus      1041 ~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~-~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A         1041 TQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTV-THPVVRNALFCLESA 1108 (1451)
T ss_dssp             HHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCCC-CCHHHHHHHHHHHHh
Confidence            9999999999999999973  331        134678999999999999865 578999999999875

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=99.24  E-value=1.2e-10  Score=101.58  Aligned_cols=92  Identities=18%  Similarity=0.108  Sum_probs=69.4

Q ss_pred             ccchHHHHHHHHHHHHhhCCc-cchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcCcCCCC-hH
Q 028222           99 YVECTASALKAMTLFQKLYPK-HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSN-CL  176 (212)
Q Consensus        99 ~~~~Ta~al~aL~~~~~~~~~-~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g~~~~~-~~  176 (212)
                      +||+||++++||..+...... .....+..++++.+.+|++.|++||+|+      ..|.|++|++||...+..+.. ..
T Consensus       177 sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG------N~~ST~lA~QAL~~~~~~~~~~~w  250 (414)
T 2bb6_A          177 SVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFG------NVYSTPLALQLLMGSLRPSVELGT  250 (414)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBS------STTTHHHHHHHHTTCSSCCHHHHH
T ss_pred             cccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCcc------chhhHHHHHHHHHhcCCCcccccc
Confidence            688999999999998764211 1122334444444488889999999993      368899999999999986521 13


Q ss_pred             HHHHHHHHHHhcccCCCcccc
Q 028222          177 AIRKATDFLLNIQCDDGGWGE  197 (212)
Q Consensus       177 ~i~~a~~~Ll~~Q~~dGgw~~  197 (212)
                      ...+++++|++ |.+||+|..
T Consensus       251 ~~~~a~~~Ll~-q~~dG~F~n  270 (414)
T 2bb6_A          251 ACLKAKAALQA-SLQHKTFQN  270 (414)
T ss_dssp             HHHHHHHHHHH-HHTTTCCCS
T ss_pred             hHHHHHHHHHH-hccCCCCCC
Confidence            78899999999 999999984

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=99.23  E-value=2.6e-11  Score=120.24  Aligned_cols=124  Identities=14%  Similarity=0.146  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHH
Q 028222           50 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI  129 (212)
Q Consensus        50 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i  129 (212)
                      +.+++++++|+++|++||||+.|...                     +++...|++|+.+|..+......-.    ...+
T Consensus       872 ~~i~~g~~rll~~q~~dGgf~~f~~~---------------------~~s~~lTa~v~~~l~~a~~~~~~v~----~~~l  926 (1325)
T 2pn5_A          872 NLLRQGYQNQMRYRQTDGSFGLWETT---------------------NGSVFLTAFVGTSMQTAVKYISDID----AAMV  926 (1325)
T ss_dssp             HHHHHHHHHHGGGBCTTSCBCSSSSS---------------------CCCHHHHHHHHHHHHHHTTTCSCSC----HHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCeeccCCC---------------------CCCeeehHHHHHHHHHHHhhEEcCC----HHHH
Confidence            45788888999999999999977542                     2344579999999998864321111    3679


Q ss_pred             HHHHHHHHhccccCCCcCCCCcc----------chhhHHHHHHHHHHHcCcCC-CChHHHHHHHHHHHhcccC-CCcccc
Q 028222          130 TNGVKFTEDSQKLDGSWYGTWGV----------CFIYSTWWAISGLVAAEKTY-SNCLAIRKATDFLLNIQCD-DGGWGE  197 (212)
Q Consensus       130 ~ra~~~L~~~Q~~dG~w~g~~~~----------~~~~~T~~al~aL~~~g~~~-~~~~~i~~a~~~Ll~~Q~~-dGgw~~  197 (212)
                      .|+++||.+.|++||+|.+.|..          ...+.|++++.+|...|... .....+++|++||.++|+. +++|+.
T Consensus       927 ~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~ 1006 (1325)
T 2pn5_A          927 EKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDL 1006 (1325)
T ss_dssp             HHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHH
T ss_pred             HHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHH
Confidence            99999999999999999775431          12345788888888776432 1346899999999998876 788865


Q ss_pred             c
Q 028222          198 S  198 (212)
Q Consensus       198 ~  198 (212)
                      .
T Consensus      1007 a 1007 (1325)
T 2pn5_A         1007 S 1007 (1325)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.18  E-value=5.7e-11  Score=103.39  Aligned_cols=129  Identities=20%  Similarity=0.296  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHH
Q 028222           51 RFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFIT  130 (212)
Q Consensus        51 ~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~  130 (212)
                      .++++++||+++|+.||||+..+.            .|         ++...|..+|.+|..++...         ..+.
T Consensus       192 d~~~~~~~I~~cq~ydGGfg~~p~------------~E---------sH~G~TfCalaaL~lL~~~~---------~d~~  241 (390)
T 3dra_B          192 DLISLQQFILDRININGGFSSTIM------------DE---------SHLGFTFCAIASLKLLNYPL---------EKLK  241 (390)
T ss_dssp             CHHHHHHHHHTTBCTTSCBCSSTT------------SC---------CCHHHHHHHHHHHHHTTCCG---------GGCH
T ss_pred             cHHHHHHHHHHhcCCCCCcCCCCC------------cc---------cccchhHHHHHHHHHhCccc---------ccHH
Confidence            378999999999999999995322            12         34446888999999886431         2367


Q ss_pred             HHHHHHHhccc----------------------------cCCCcCCCCcc-chhhHHHHHHHHHHHcCcCCCChHHHHHH
Q 028222          131 NGVKFTEDSQK----------------------------LDGSWYGTWGV-CFIYSTWWAISGLVAAEKTYSNCLAIRKA  181 (212)
Q Consensus       131 ra~~~L~~~Q~----------------------------~dG~w~g~~~~-~~~~~T~~al~aL~~~g~~~~~~~~i~~a  181 (212)
                      +.++||.++|.                            ++|||.|+... ..+=-+.+++.+|..++......-..++.
T Consensus       242 ~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l  321 (390)
T 3dra_B          242 STKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKA  321 (390)
T ss_dssp             HHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGGGGGSCHHHH
T ss_pred             HHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhccccccccCHHHH
Confidence            88999999997                            57999887532 11223667777787777411012235677


Q ss_pred             HHHHHhcc-cC-CCccccccCcCCCCcccc
Q 028222          182 TDFLLNIQ-CD-DGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       182 ~~~Ll~~Q-~~-dGgw~~~~~s~~~~~y~~  209 (212)
                      .+||++|| ++ .|||+..+...++..+|+
T Consensus       322 ~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~  351 (390)
T 3dra_B          322 EDYLLNKTQNQLFGGFGRDPDSTPDPMHSY  351 (390)
T ss_dssp             HHHHHHTTBCTTTCSBCSSTTSCCCHHHHH
T ss_pred             HHHHHHhccCCCCCCcCCCCCCCCchHHHH
Confidence            89999984 54 899999998777665554

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=99.15  E-value=1.2e-10  Score=111.66  Aligned_cols=116  Identities=21%  Similarity=0.118  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHH
Q 028222           50 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI  129 (212)
Q Consensus        50 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i  129 (212)
                      +.|++++.+|+.+|++||||+.|...                     +++.-.|++|+..|..+...... .    ...+
T Consensus       299 ~~i~~g~~rll~~Q~~DGsfs~w~~~---------------------~~s~wlTAyv~~~l~~a~~~~~v-~----~~~i  352 (915)
T 2hr0_B          299 ELIKKGYTQQLAFRQPSSAFAAFVKR---------------------APSTWLTAYVVKVFSLAVNLIAI-D----SQVL  352 (915)
T ss_dssp             HHHHHHHHHHGGGCCTTTCCBSSSSS---------------------CBCHHHHHHHHHHHHTTTTTSCC-C----HHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCccccCCC---------------------CCcceehHHHHHHHHHhhhcCCC-C----HHHH
Confidence            35777888999999999999977532                     22344699999999887543211 1    3689


Q ss_pred             HHHHHHHHh-ccccCCCcCCCCcc--------------chhhHHHHHHHHHHHcCcC-----CCChHHHHHHHHHHHhcc
Q 028222          130 TNGVKFTED-SQKLDGSWYGTWGV--------------CFIYSTWWAISGLVAAEKT-----YSNCLAIRKATDFLLNIQ  189 (212)
Q Consensus       130 ~ra~~~L~~-~Q~~dG~w~g~~~~--------------~~~~~T~~al~aL~~~g~~-----~~~~~~i~~a~~~Ll~~Q  189 (212)
                      .+|++||++ .|.+||+|.+.|..              ...+.|++++.+|..+|..     +...+.+++|++||.+.+
T Consensus       353 ~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~  432 (915)
T 2hr0_B          353 CGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANY  432 (915)
T ss_dssp             HHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhh
Confidence            999999995 99999999765431              2345689999999988652     124678999999999886


Q ss_pred             cC
Q 028222          190 CD  191 (212)
Q Consensus       190 ~~  191 (212)
                      ..
T Consensus       433 ~~  434 (915)
T 2hr0_B          433 MN  434 (915)
T ss_dssp             GG
T ss_pred             hc
Confidence            54

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=98.98  E-value=1.3e-08  Score=95.77  Aligned_cols=176  Identities=16%  Similarity=0.138  Sum_probs=109.4

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      .|+++|||++-.  ...++.=.||.|+..|..+.+.      ..++++.+.+++.||+++|.+||.|.....--+..+  
T Consensus       380 ~q~~DGsfs~w~--~~~~s~wLTAyV~~~l~~A~~~------i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~--  449 (767)
T 4fxk_B          380 FRKADGSYAAWL--SRDSSTWLTAFVLKVLSLAQEQ------VGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM--  449 (767)
T ss_dssp             TBCTTSCBBSSS--SSCBCHHHHHHHHHHHHHTCSS------SSCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCC--
T ss_pred             hhcCCCCcccCC--CCCCCchhHHHHHHHHHHHHhh------cCcchHHHHHHHHHHHHhhhhcccchhcchhcchhh--
Confidence            478999999432  2234555899999999998652      236788999999999999999999974321100000  


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCcc----chhHHHHHHHHHHHHHHhcccc----------------
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH----KKNEVNNFITNGVKFTEDSQKL----------------  142 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~----~~~~i~~~i~ra~~~L~~~Q~~----------------  142 (212)
                             -+........+..||+++.+|...+......    ....+...+.|+++||.+....                
T Consensus       450 -------~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~~~~~y~~Al~ayaL~  522 (767)
T 4fxk_B          450 -------QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAGLLGAHAAAITAYALS  522 (767)
T ss_dssp             -------CSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHH
T ss_pred             -------cCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence                   0000011123456899999998765432211    1133455677777777443211                


Q ss_pred             ------------------------CC-CcCCC--------------------C---ccchhhHHHHHHHHHHHcCcCCCC
Q 028222          143 ------------------------DG-SWYGT--------------------W---GVCFIYSTWWAISGLVAAEKTYSN  174 (212)
Q Consensus       143 ------------------------dG-~w~g~--------------------~---~~~~~~~T~~al~aL~~~g~~~~~  174 (212)
                                              ++ .|...                    |   ....+..|++||+++......   
T Consensus       523 l~~~~~~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla~l~~~~~---  599 (767)
T 4fxk_B          523 LTKAPVDLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGK---  599 (767)
T ss_dssp             HHTCTTHHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHHHHHHTSS---
T ss_pred             HcCCcHHHHHHHHHHHHhhcEEcCCeeEEeccCCCcccccccccccccccccccccchHHHHHHHHHHHHHHhcCCc---
Confidence                                    11 12100                    0   001244689999988876433   


Q ss_pred             hHHHHHHHHHHHhcccCCCccccc
Q 028222          175 CLAIRKATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       175 ~~~i~~a~~~Ll~~Q~~dGgw~~~  198 (212)
                      .+.+.+.++||+++|+..|||...
T Consensus       600 ~~~a~~iv~WL~~Qr~~~Ggf~ST  623 (767)
T 4fxk_B          600 AEMADQASAWLTRQGSFQGGFRST  623 (767)
T ss_dssp             CHHHHHHHHHHHHTCCTTSSCSSH
T ss_pred             hhHHHHHHHHHHHhhcCCCCCcCH
Confidence            456888899999999999999854

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=98.80  E-value=5.3e-09  Score=91.29  Aligned_cols=107  Identities=12%  Similarity=-0.059  Sum_probs=77.5

Q ss_pred             CCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHH----HHHHhcccCCCceeecCCCCChhhhhhcCcccccchhh
Q 028222           19 LPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAA----NFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVI   94 (212)
Q Consensus        19 ~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av----~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~   94 (212)
                      +.++|.||.+++||.-+.+.-    ..+.....+.+++    .+|++.|++||+|+.                       
T Consensus       175 ~~sVDT~AMA~lAL~C~~~~~----~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FGN-----------------------  227 (414)
T 2bb6_A          175 HVSVDTMAMAGMAFSCLELSN----LNPKQRNRINLALKRVQEKILKAQTPEGYFGN-----------------------  227 (414)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHT----SCGGGHHHHHHHHHHHHHHHHHTBCTTSCBSS-----------------------
T ss_pred             cccccHHHHHHHHHHHHhhcC----CCcchHHHHHHHHHHHHHHHHHhhcCCCCccc-----------------------
Confidence            458999999999999986521    0122345566666    888899999999972                       


Q ss_pred             cccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcC
Q 028222           95 IEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAE  169 (212)
Q Consensus        95 ~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g  169 (212)
                           +..|+.|+++|...+.. +    .+-.-.+.+++++|++ |.+||+|.      ....|+.+|.||...+
T Consensus       228 -----~~ST~lA~QAL~~~~~~-~----~~~~w~~~~a~~~Ll~-q~~dG~F~------np~ataQ~lpaL~gkt  285 (414)
T 2bb6_A          228 -----VYSTPLALQLLMGSLRP-S----VELGTACLKAKAALQA-SLQHKTFQ------NPLMISQLLPVLNQKS  285 (414)
T ss_dssp             -----TTTHHHHHHHHTTCSSC-C----HHHHHHHHHHHHHHHH-HHTTTCCC------SHHHHHHHHHHTTTCC
T ss_pred             -----hhhHHHHHHHHHhcCCC-c----ccccchHHHHHHHHHH-hccCCCCC------ChHHHHHHHHHhcCCC
Confidence                 22599999999876431 1    1111368899999999 99999993      2457888888887543

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=98.66  E-value=4.2e-07  Score=91.96  Aligned_cols=174  Identities=13%  Similarity=0.139  Sum_probs=104.6

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHh-cccCCCceeecCCCCChhhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGITGWEPAGAPSWI   81 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~~~~~~~~~~~~   81 (212)
                      .|++.|||++-..  ..++.=.||.++..|..+.+.      ..++++.+.++++||.+ +|++||.|.....-.+..+ 
T Consensus      1058 ~q~~dGsfs~w~~--~~~s~wLTAyv~~~l~~A~~~------~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~- 1128 (1661)
T 2b39_A         1058 FRQKSSAYAAFQY--RPPSTWLTAYVVKVFALAANL------IAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEM- 1128 (1661)
T ss_dssp             TBCTTSCBCSSTT--SCCCHHHHHHHHHHHHHHTTT------SCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTS-
T ss_pred             hhcCCCCccccCC--CCCchhhhHHHHHHHHhhhhc------ccCCHHHHHHHHHHhhHhhCCCCCccccccceechhh-
Confidence            3689999995332  245566899999999998652      14678999999999995 9999999963211000000 


Q ss_pred             hhcCcccccchhhc-ccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhc---------------------
Q 028222           82 ELLNPIEFLDEVII-EHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDS---------------------  139 (212)
Q Consensus        82 ~~l~~~e~~~~~~~-d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~---------------------  139 (212)
                              -+.... ..+.+..||.++.+|...+.... ....++...+.++++||.+.                     
T Consensus      1129 --------~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~-~~~~~~~~~i~~a~~yL~~~~~~~~~~y~~A~layAL~l~g 1199 (1661)
T 2b39_A         1129 --------IGGFRDTREKDVSLTAFVLIALHEAKDICE-AQVNSLGRSIAKAGDFLENHYRELRRPYTVAIAAYALALLG 1199 (1661)
T ss_dssp             --------CCCTTCCTTSSHHHHHHHHHHHHHTTTTTT-TTCSSHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTT
T ss_pred             --------cCCccccccCccccHHHHHHHHHhcccccc-ccCcchhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcC
Confidence                    000000 01134458888888876532100 00011234556666666543                     


Q ss_pred             -------------cccCCCcCCCCc-cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccc
Q 028222          140 -------------QKLDGSWYGTWG-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       140 -------------Q~~dG~w~g~~~-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~  198 (212)
                                   ......|....+ ...+..|++||++|...+...    .+.+.++||++.|+.+|||...
T Consensus      1200 ~~a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~tayaLlall~~~~~~----~~~~iv~wL~~qr~~~gg~~ST 1268 (1661)
T 2b39_A         1200 KLEGDRLTKFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARKDYD----TTPPVVRWLNEQRYYGGGYGST 1268 (1661)
T ss_dssp             CCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCTT----TSHHHHHHHHHCCTBTTBBCSH
T ss_pred             CcHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHhcCChh----hHHHHHHHHHhcccCCCCcccc
Confidence                         221223421111 113457889999999876542    3567789999999999999854

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*

Probab=98.57  E-value=4.7e-08  Score=84.88  Aligned_cols=110  Identities=12%  Similarity=0.047  Sum_probs=80.5

Q ss_pred             CCCCccHHHHHHHHHHhhcC-CCCCc-C-CCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhc
Q 028222           19 LPVSDCSSESFVCCLHLSTM-PPEIV-G-EKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVII   95 (212)
Q Consensus        19 ~~~~d~Ta~~l~al~~~~~~-~~~~~-~-~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~   95 (212)
                      ..++|.+|.+++||.-+.+. +.++. + +.....++++++.+|++.|++||+|+.                        
T Consensus       149 ~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fGn------------------------  204 (399)
T 2pmv_A          149 PFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIGD------------------------  204 (399)
T ss_dssp             CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBSS------------------------
T ss_pred             cccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCcccc------------------------
Confidence            44899999999999988651 11100 0 111256789999999999999999982                        


Q ss_pred             ccCccchHHHHHHHHHHHHhhCCccchhHHHH-HHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcCc
Q 028222           96 EHDYVECTASALKAMTLFQKLYPKHKKNEVNN-FITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEK  170 (212)
Q Consensus        96 d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~-~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g~  170 (212)
                          +..|+.|++||...+.. +.      .. .+.++++||++ |.+||+|.      ....|+.+|.+|...+.
T Consensus       205 ----~yST~LA~QAL~~~~~~-~~------~~W~c~~al~~l~~-q~~~G~F~------np~~taQilPaL~~kty  262 (399)
T 2pmv_A          205 ----IYSTGLAMQALSVTPEP-SK------KEWNCKKTTDMILN-EIKQGKFH------NPMSIAQILPSLKGKTY  262 (399)
T ss_dssp             ----HHHHHHHHHHHHHCSSC-CS------SCCCHHHHHHHHHH-HHTTTTTC------SHHHHHHHHHHHTTCCG
T ss_pred             ----cccHHHHHHHHHhcCCC-cc------ccccHHHHHHHHHH-HhhCCCcC------CHHHHHHHHHHhcCCCc
Confidence                22699999999887532 11      12 58899999999 99999993      35688999999876543

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=98.56  E-value=7.3e-09  Score=104.22  Aligned_cols=175  Identities=12%  Similarity=0.087  Sum_probs=0.0

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHh-cccCCCceeecCCCCChhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      |+++|||.+-..  ..+++=.||.|++.|..+.+.     +-.++++.+.++++||++ +|++||.|.....--+..+. 
T Consensus      1043 q~~DGsfs~w~~--~~~stWLTAyV~k~f~~A~~~-----i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~- 1114 (1642)
T 3prx_B         1043 KKADHSYAAFTN--RASSSWLTAYVVKVFAMAAKM-----VAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQ- 1114 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCCCeecCCC--CCCccccHHHHHHHHHHHHhh-----ccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhcc-
Confidence            678999994321  123333899999999997652     112667899999999998 89999999743211111110 


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-CCCcC--------------
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL-DGSWY--------------  147 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~-dG~w~--------------  147 (212)
                              |......+.+..||.++.||...+...+. ....+..++.||++||.+.... ...+.              
T Consensus      1115 --------Gg~~~~~~~~~lTA~vliaL~e~~~~~~~-~~~~~~~~i~~a~~~L~~~~~~~~~~Y~~Ai~aYAl~l~~~~ 1185 (1642)
T 3prx_B         1115 --------GGIQGAEEEVYLTAFILVALLESKTICND-YVNSLDSSIKKATNYLLKKYEKLQRPYTTALTAYALAAADQL 1185 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------CCccCCCCcccchHHHHHHHHhccccccc-ccccchHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCc
Confidence                    11000112456799999999876532110 0112346788888888755221 00000              


Q ss_pred             -------------CCCcc-----chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCcccccc
Q 028222          148 -------------GTWGV-----CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY  199 (212)
Q Consensus       148 -------------g~~~~-----~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~  199 (212)
                                   ..|..     ..+..|++||+||...+..    ......++||.++|+..|||+..-
T Consensus      1186 ~~~~l~~l~~~~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~~----~~a~~iv~WL~~qr~~~Ggf~STQ 1251 (1642)
T 3prx_B         1186 NDDRVLMAASTGRDHWEEYNAHTHNIEGTSYALLALLKMKKF----DQTGPIVRWLTDQNFYGETYGQTQ 1251 (1642)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             hHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCch----hhHHHHHHHHHHhccCCCcccCcH
Confidence                         01221     1345789999999887542    356778899999999999998643

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=98.49  E-value=2.2e-06  Score=86.84  Aligned_cols=171  Identities=9%  Similarity=0.053  Sum_probs=100.9

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHh-cccCCCceeecCCCCChhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      |++.|||++-.  ...++.=.||.++..|..+.+.     + .++++.+.++++||.+ +|++||.|.....-.+..+. 
T Consensus      1060 q~~dGsfs~w~--~~~~s~wLTAyv~~~l~~A~~~-----~-~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~- 1130 (1676)
T 3cu7_A         1060 RNADYSYSVWK--GGSASTWLTAFALRVLGQVNKY-----V-EQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQ- 1130 (1676)
T ss_dssp             BCTTSCBCSSS--SSCCCHHHHHHHHHHHHHHHTT-----S-CCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCC-
T ss_pred             cCCCCCccccC--CCCCcEEEeHHHHHHHHHHHhc-----c-cCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhc-
Confidence            68999999532  2344566899999999998752     1 4678999999999999 99999998632110000000 


Q ss_pred             hcCcccccchhh--cccCccchHHHHHHHHHHHHhhCCccchhHHHHH--------------------------------
Q 028222           83 LLNPIEFLDEVI--IEHDYVECTASALKAMTLFQKLYPKHKKNEVNNF--------------------------------  128 (212)
Q Consensus        83 ~l~~~e~~~~~~--~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~--------------------------------  128 (212)
                              +...  ...+.+..||.++.+|...+...+   ..++..+                                
T Consensus      1131 --------gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~---~~~~~~~i~~a~~yL~~~~~~~~~~y~~A~lA~Al~l~g 1199 (1676)
T 3cu7_A         1131 --------GTLPVEARENSLYLTAFTVIGIRKAFDICP---LVKIDTALIKADNFLLENTLPAQSTFTLAISAYALSLGD 1199 (1676)
T ss_dssp             --------SCHHHHHHHHHHHHHHHHHHHHHHTGGGSC---CHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTSC
T ss_pred             --------CCcccccccCccccHHHHHHHHHhcccccC---CcccHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcC
Confidence                    0000  000122345666666654321000   0000011                                


Q ss_pred             -----HHHHHHHHHhccc-cCC-----CcCCC----------Ccc-chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHH
Q 028222          129 -----ITNGVKFTEDSQK-LDG-----SWYGT----------WGV-CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLL  186 (212)
Q Consensus       129 -----i~ra~~~L~~~Q~-~dG-----~w~g~----------~~~-~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll  186 (212)
                           .++.++.|++... .++     .|...          |+. ..+..|+++|++|...+.    ...+.+.++||+
T Consensus      1200 ~~~~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~~----~~~~~~iv~wL~ 1275 (1676)
T 3cu7_A         1200 KTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKD----INYVNPVIKWLS 1275 (1676)
T ss_dssp             TTCHHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcCC----hhHHHHHHHHHH
Confidence                 3444555655544 232     44221          121 134578999999998762    346788889999


Q ss_pred             hcccCCCccccc
Q 028222          187 NIQCDDGGWGES  198 (212)
Q Consensus       187 ~~Q~~dGgw~~~  198 (212)
                      +.|+.+|||...
T Consensus      1276 ~qr~~~Gg~~ST 1287 (1676)
T 3cu7_A         1276 EEQRYGGGFYST 1287 (1676)
T ss_dssp             HHSCSSSCCSTT
T ss_pred             hccCCCCCcccc
Confidence            999999999854

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=98.41  E-value=1.6e-06  Score=81.61  Aligned_cols=112  Identities=18%  Similarity=0.143  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHH
Q 028222           51 RFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFIT  130 (212)
Q Consensus        51 ~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~  130 (212)
                      .++.++.-|++.|++||||+.|.....                     +.-.|+.|+..|..+...... +    ...+.
T Consensus       369 ~l~~gyqrll~~q~~DGsfs~w~~~~~---------------------s~wLTAyV~~~l~~A~~~i~i-d----~~~i~  422 (767)
T 4fxk_B          369 LIQKGYMRIQQFRKADGSYAAWLSRDS---------------------STWLTAFVLKVLSLAQEQVGG-S----PEKLQ  422 (767)
T ss_dssp             HHHHHHHHHTTTBCTTSCBBSSSSSCB---------------------CHHHHHHHHHHHHHTCSSSSC-C----HHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCcccCCCCCC---------------------CchhHHHHHHHHHHHHhhcCc-c----hHHHH
Confidence            477888889999999999997743222                     233699999999987543211 1    35789


Q ss_pred             HHHHHHHhccccCCCcCCCC--------c-----cchhhHHHHHHHHHHHcCcCCC----------ChHHHHHHHHHHHh
Q 028222          131 NGVKFTEDSQKLDGSWYGTW--------G-----VCFIYSTWWAISGLVAAEKTYS----------NCLAIRKATDFLLN  187 (212)
Q Consensus       131 ra~~~L~~~Q~~dG~w~g~~--------~-----~~~~~~T~~al~aL~~~g~~~~----------~~~~i~~a~~~Ll~  187 (212)
                      +++.||++.|.+||.|...-        +     .....-|++++.+|...+....          ....+.+|++||.+
T Consensus       423 ~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~  502 (767)
T 4fxk_B          423 ETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGE  502 (767)
T ss_dssp             HHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHH
Confidence            99999999999999995310        1     1124568899999987644211          13457777777754


Q ss_pred             c
Q 028222          188 I  188 (212)
Q Consensus       188 ~  188 (212)
                      .
T Consensus       503 ~  503 (767)
T 4fxk_B          503 K  503 (767)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=98.32  E-value=3.7e-06  Score=85.14  Aligned_cols=112  Identities=22%  Similarity=0.139  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHH
Q 028222           51 RFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFIT  130 (212)
Q Consensus        51 ~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~  130 (212)
                      .|+.++.-++..|++||||+.|....                     ++.-.|+.|+..|..+.....- .    ...+.
T Consensus      1047 ~i~~g~~r~l~~q~~dGsfs~w~~~~---------------------~s~wLTAyv~~~l~~A~~~~~v-~----~~~l~ 1100 (1661)
T 2b39_A         1047 LIRKGYTQQLAFRQKSSAYAAFQYRP---------------------PSTWLTAYVVKVFALAANLIAI-D----SKDLC 1100 (1661)
T ss_dssp             HHHHHHHHHHTTBCTTSCBCSSTTSC---------------------CCHHHHHHHHHHHHHHTTTSCC-C----HHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCccccCCCC---------------------CchhhhHHHHHHHHhhhhcccC-C----HHHHH
Confidence            56677788889999999999764322                     2233699999999988654211 1    46899


Q ss_pred             HHHHHHHh-ccccCCCcCCCC--------c-c-c----hhhHHHHHHHHHHHcCcC-----CCChHHHHHHHHHHHhc
Q 028222          131 NGVKFTED-SQKLDGSWYGTW--------G-V-C----FIYSTWWAISGLVAAEKT-----YSNCLAIRKATDFLLNI  188 (212)
Q Consensus       131 ra~~~L~~-~Q~~dG~w~g~~--------~-~-~----~~~~T~~al~aL~~~g~~-----~~~~~~i~~a~~~Ll~~  188 (212)
                      ++++||.+ .|++||+|....        + . .    ...-|++++.+|...|..     +.....+++|++||.+.
T Consensus      1101 ~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~ 1178 (1661)
T 2b39_A         1101 ETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENH 1178 (1661)
T ss_dssp             HHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHh
Confidence            99999995 999999984210        1 0 1    234589999999988642     12356889999999775

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=98.24  E-value=4.4e-06  Score=84.66  Aligned_cols=112  Identities=21%  Similarity=0.217  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHH
Q 028222           51 RFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFIT  130 (212)
Q Consensus        51 ~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~  130 (212)
                      .++.+..-+++.|++||||+.|....                     ++.-.|+.|+..|..+.....- .    ...+.
T Consensus      1048 ~i~~g~~r~l~~q~~dGsfs~w~~~~---------------------~s~wLTAyv~~~l~~A~~~~~v-~----~~~l~ 1101 (1676)
T 3cu7_A         1048 KLKEGMLSIMSYRNADYSYSVWKGGS---------------------ASTWLTAFALRVLGQVNKYVEQ-N----QNSIC 1101 (1676)
T ss_dssp             HHHHHHHHGGGGBCTTSCBCSSSSSC---------------------CCHHHHHHHHHHHHHHHTTSCC-C----HHHHH
T ss_pred             HHHHHHHHHhhccCCCCCccccCCCC---------------------CcEEEeHHHHHHHHHHHhcccC-C----HHHHH
Confidence            35555666778999999999773221                     2233699999999988754211 1    46789


Q ss_pred             HHHHHHHh-ccccCCCcCCCC--------cc-------chhhHHHHHHHHHHHcCcC---CCChHHHHHHHHHHHhc
Q 028222          131 NGVKFTED-SQKLDGSWYGTW--------GV-------CFIYSTWWAISGLVAAEKT---YSNCLAIRKATDFLLNI  188 (212)
Q Consensus       131 ra~~~L~~-~Q~~dG~w~g~~--------~~-------~~~~~T~~al~aL~~~g~~---~~~~~~i~~a~~~Ll~~  188 (212)
                      ++++||.+ .|++||+|....        +.       ....-|++++.+|..++..   ....+.+++|++||.+.
T Consensus      1102 ~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~ 1178 (1676)
T 3cu7_A         1102 NSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLEN 1178 (1676)
T ss_dssp             HHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCCcccCCccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHh
Confidence            99999999 999999984211        10       1234578999999887542   11245677777777654

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=98.06  E-value=5.2e-07  Score=90.94  Aligned_cols=114  Identities=18%  Similarity=0.226  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHH
Q 028222           50 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI  129 (212)
Q Consensus        50 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i  129 (212)
                      ..|+.+..-++++|++||||+.|......                     .=.||.|+..|..+......-+    ...+
T Consensus      1030 ~~i~~Gyqr~l~yq~~DGsfs~w~~~~~s---------------------tWLTAyV~k~f~~A~~~i~~Vd----~~~l 1084 (1642)
T 3prx_B         1030 NQIVTGYAQQMVYKKADHSYAAFTNRASS---------------------SWLTAYVVKVFAMAAKMVAGIS----HEII 1084 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhcCCCCCeecCCCCCCc---------------------cccHHHHHHHHHHHHhhccCCC----HHHH
Confidence            45667778888999999999977432222                     2258999999887654311001    3579


Q ss_pred             HHHHHHHHh-ccccCCCcCCCC--------c-----cchhhHHHHHHHHHHHcCcCC-----CChHHHHHHHHHHHhc
Q 028222          130 TNGVKFTED-SQKLDGSWYGTW--------G-----VCFIYSTWWAISGLVAAEKTY-----SNCLAIRKATDFLLNI  188 (212)
Q Consensus       130 ~ra~~~L~~-~Q~~dG~w~g~~--------~-----~~~~~~T~~al~aL~~~g~~~-----~~~~~i~~a~~~Ll~~  188 (212)
                      .++++||++ +|++||+|....        |     .....-|++++.||...+...     .....+++|++||.+.
T Consensus      1085 ~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B         1085 CGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhhccCCCCcccccccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence            999999998 899999995321        1     113456899999999886421     1356899999999765

>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.95  E-value=0.015  Score=51.26  Aligned_cols=156  Identities=11%  Similarity=0.137  Sum_probs=94.5

Q ss_pred             CCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc--cCCCceeecCCCCChhhhhhcCcccccchhhcccC
Q 028222           21 VSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ--SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHD   98 (212)
Q Consensus        21 ~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q--~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~   98 (212)
                      ..||.+..+.+|+.+-+.    .+.+...+.+.+..+||+..+  .++|||-........-                   
T Consensus       143 ~LDD~g~~~~~Li~lY~~----T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~-------------------  199 (445)
T 3k11_A          143 ALDDAGAVCTAMIKLRLK----DESLPVDGLIQNYFDFIINKEYRLADGTFARNRPQRNTL-------------------  199 (445)
T ss_dssp             SGGGTHHHHHHHHHHHHH----CTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBCSSSTTEE-------------------
T ss_pred             cchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHcCCCCCCCceeecCCCCCce-------------------
Confidence            367788777777775432    245678899999999999988  5689987421110000                   


Q ss_pred             ccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-CCCcCCCCcc--------chhhHHHHHHHHHHHcC
Q 028222           99 YVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL-DGSWYGTWGV--------CFIYSTWWAISGLVAAE  169 (212)
Q Consensus        99 ~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~-dG~w~g~~~~--------~~~~~T~~al~aL~~~g  169 (212)
                      -+|+-.+++..|+.++....+.+..-++.+++....+....+++ .|-|.-.|..        .=..+.++++.||...-
T Consensus       200 WiD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l  279 (445)
T 3k11_A          200 WLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFCWARANGWALLTACELL  279 (445)
T ss_dssp             ETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCCBHHHHHHHHHHHHHHH
T ss_pred             EecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcceecccchHHHHHHHHHH
Confidence            12344577888888876532211002344444444444455544 5666422211        11357788888887642


Q ss_pred             c--CC--C----ChHHHHHHHHHHHhcccCCCcccccc
Q 028222          170 K--TY--S----NCLAIRKATDFLLNIQCDDGGWGESY  199 (212)
Q Consensus       170 ~--~~--~----~~~~i~~a~~~Ll~~Q~~dGgw~~~~  199 (212)
                      .  +.  .    .....++.++.|+++|.+||-|....
T Consensus       280 ~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vl  317 (445)
T 3k11_A          280 DVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLL  317 (445)
T ss_dssp             HHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBT
T ss_pred             HhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhcc
Confidence            1  11  0    13567888999999999999998644

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=96.72  E-value=0.0017  Score=60.58  Aligned_cols=82  Identities=12%  Similarity=0.066  Sum_probs=52.1

Q ss_pred             CCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccC
Q 028222           19 LPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHD   98 (212)
Q Consensus        19 ~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~   98 (212)
                      -|.+-|||-|  |+.-.   +   .+.|.    -.++++||+..|.+||+|+....               |..    ..
T Consensus        31 S~S~YDTAWV--Amvp~---~---~~~p~----Fp~~~~wil~nQ~~DGsWG~~~~---------------~~~----~D   79 (727)
T 3pya_A           31 TISAYDTAWV--ALIDA---G---DKTPA----FPSAVKWIAENQLSDGSWGDAYL---------------FSY----HD   79 (727)
T ss_dssp             CCCHHHHHHH--HTCBC---S---SSSBS----CHHHHHHHHHTCCTTSCCSCSSS---------------CCH----HH
T ss_pred             cCcHHHhHHH--hhccC---C---CCCCC----CHHHHHHHHhcCCCCCCCCCCCC---------------cch----hh
Confidence            3455688873  33221   1   13344    46788999999999999984211               000    01


Q ss_pred             ccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcc
Q 028222           99 YVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ  140 (212)
Q Consensus        99 ~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q  140 (212)
                      .+-.|..||.||...+..         ..+|.||+.||.+.-
T Consensus        80 ~ll~TLAcvlAL~~w~~~---------~~~i~rGl~fl~~nl  112 (727)
T 3pya_A           80 RLINTLACVVALRSWNLF---------PHQCNKGITFFRENI  112 (727)
T ss_dssp             HHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHH
Confidence            123588899999886421         258999999998764

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=96.57  E-value=0.0024  Score=60.10  Aligned_cols=60  Identities=17%  Similarity=0.199  Sum_probs=42.2

Q ss_pred             HHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHH
Q 028222           53 YDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNG  132 (212)
Q Consensus        53 ~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra  132 (212)
                      .++++||+..|.+||+|+....               |..    ...+-.|..||.||...+..         .++|.||
T Consensus        77 p~~~~wil~nQ~~DGsWg~~~~---------------~~~----~d~l~~TlAcvlAL~~w~~~---------~~~i~~G  128 (785)
T 3s9v_A           77 PETVEWILQNQLKDGSWGEGFY---------------FLA----YDRILATLACIITLTLWRTG---------ETQVQKG  128 (785)
T ss_dssp             HHHHHHHHHCCCTTSCCSCSSS---------------CCH----HHHHHHHHHHHHHHHHTTCC---------HHHHHHH
T ss_pred             hHHHHHHHHccCCCCCCCCCCC---------------Cch----HHHHHHHHHHHHHHHHcccC---------HHHHHHH
Confidence            5789999999999999984211               000    01123588899999886421         2589999


Q ss_pred             HHHHHhcc
Q 028222          133 VKFTEDSQ  140 (212)
Q Consensus       133 ~~~L~~~Q  140 (212)
                      +.||.+.-
T Consensus       129 l~fl~~nl  136 (785)
T 3s9v_A          129 IEFFRTQA  136 (785)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=96.56  E-value=0.0025  Score=59.88  Aligned_cols=61  Identities=16%  Similarity=0.229  Sum_probs=43.0

Q ss_pred             HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222           52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN  131 (212)
Q Consensus        52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r  131 (212)
                      -.++++||+..|.+||||+....               |.    ..+.+-.|..||.||...+..         .++|.|
T Consensus        55 Fp~~~~wil~nQ~~DGsWg~~~~---------------~~----~~d~ll~TlAcvlAL~~w~~~---------~~~i~~  106 (764)
T 3p5p_A           55 FPQALNWVFNNQLQDGSWGIESH---------------FS----LCDRLLNTTNSVIALSVWKTG---------HSQVQQ  106 (764)
T ss_dssp             CHHHHHHHHHCCCTTSCCSCTTS---------------CC----HHHHHHHHHHHHHHHHHTTCC---------HHHHHH
T ss_pred             ChHHHHHHHHccCCCCCCCCCCC---------------cc----hHHHHHHHHHHHHHHHHccCC---------HHHHHH
Confidence            46788999999999999984211               00    001223588899999886421         258999


Q ss_pred             HHHHHHhcc
Q 028222          132 GVKFTEDSQ  140 (212)
Q Consensus       132 a~~~L~~~Q  140 (212)
                      |+.||.+.-
T Consensus       107 Gl~fl~~nl  115 (764)
T 3p5p_A          107 GAEFIAENL  115 (764)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998775

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=96.55  E-value=0.0025  Score=60.24  Aligned_cols=61  Identities=16%  Similarity=0.152  Sum_probs=43.0

Q ss_pred             HHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHH
Q 028222           52 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN  131 (212)
Q Consensus        52 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~r  131 (212)
                      -.++++||+..|.+||||+....  ..                 ....+-.|..||.||...+..         .++|.|
T Consensus       103 Fp~~~~wil~nQ~~DGsWg~~~~--~~-----------------~~d~ll~TlAcvlAL~~w~~~---------~~~i~~  154 (817)
T 3sdr_A          103 FPQTVDWILKNQLKDGSWGIQSH--FL-----------------LSDRLLATLSCVLVLLKWNVG---------DLQVEQ  154 (817)
T ss_dssp             SHHHHHHHHHCCCTTSCCSCTTC--CC-----------------HHHHHHHHHHHHHHHHHTTCC---------HHHHHH
T ss_pred             chHHHHHHHHccCCCCCCCCCCC--cc-----------------hHHHHHHHHHHHHHHHHccCC---------HHHHHH
Confidence            36788999999999999984211  00                 001123588999999887421         258999


Q ss_pred             HHHHHHhcc
Q 028222          132 GVKFTEDSQ  140 (212)
Q Consensus       132 a~~~L~~~Q  140 (212)
                      |+.||.+.-
T Consensus       155 Gl~fl~~nl  163 (817)
T 3sdr_A          155 GIEFIKSNL  163 (817)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998774

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=96.48  E-value=0.0047  Score=57.59  Aligned_cols=57  Identities=19%  Similarity=0.203  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhccccCCCcCCCCcc---chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhc
Q 028222          129 ITNGVKFTEDSQKLDGSWYGTWGV---CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNI  188 (212)
Q Consensus       129 i~ra~~~L~~~Q~~dG~w~g~~~~---~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~  188 (212)
                      ....++||++.|.+||+|+..-+.   -..-.|..|+.||...+..   ...|+||+.||.+.
T Consensus        52 Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~i~rGl~fl~~n  111 (727)
T 3pya_A           52 FPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLF---PHQCNKGITFFREN  111 (727)
T ss_dssp             CHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHH
Confidence            566799999999999999643211   1246799999999987654   46899999999764

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=96.47  E-value=0.0039  Score=58.68  Aligned_cols=59  Identities=20%  Similarity=0.213  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhccccCCCcCCCCc-c--chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcc
Q 028222          128 FITNGVKFTEDSQKLDGSWYGTWG-V--CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQ  189 (212)
Q Consensus       128 ~i~ra~~~L~~~Q~~dG~w~g~~~-~--~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q  189 (212)
                      .....++||++.|.+||+|+..-. .  ...-.|..|+.||...+..   ...|+||+.||.+.-
T Consensus        75 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl  136 (785)
T 3s9v_A           75 HFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTG---ETQVQKGIEFFRTQA  136 (785)
T ss_dssp             SSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccC---HHHHHHHHHHHHHHH
Confidence            456779999999999999964311 1  1256799999999997754   479999999997653

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=96.46  E-value=0.0045  Score=58.11  Aligned_cols=59  Identities=14%  Similarity=0.141  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhccccCCCcCCCCc---cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcc
Q 028222          128 FITNGVKFTEDSQKLDGSWYGTWG---VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQ  189 (212)
Q Consensus       128 ~i~ra~~~L~~~Q~~dG~w~g~~~---~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q  189 (212)
                      .....++||++.|.+||+|+..-+   ....-.|..|+.||...+..   ...|+||+.||.+.-
T Consensus        54 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl  115 (764)
T 3p5p_A           54 RFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTG---HSQVQQGAEFIAENL  115 (764)
T ss_dssp             SCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence            356679999999999999964321   11245799999999997754   479999999997653

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=96.43  E-value=0.0047  Score=58.39  Aligned_cols=59  Identities=17%  Similarity=0.133  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhccccCCCcCCCCcc---chhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcc
Q 028222          128 FITNGVKFTEDSQKLDGSWYGTWGV---CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQ  189 (212)
Q Consensus       128 ~i~ra~~~L~~~Q~~dG~w~g~~~~---~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q  189 (212)
                      .....++||++.|.+||+|+..-..   ...-.|..|+.||...+..   ...|+||+.||.+.-
T Consensus       102 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl  163 (817)
T 3sdr_A          102 QFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVG---DLQVEQGIEFIKSNL  163 (817)
T ss_dssp             SSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence            3467799999999999999643221   1245799999999997754   479999999998753

>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A

Probab=96.23  E-value=0.036  Score=47.83  Aligned_cols=122  Identities=13%  Similarity=0.034  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhhc---CCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccc
Q 028222           25 SSESFVCCLHLST---MPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVE  101 (212)
Q Consensus        25 Ta~~l~al~~~~~---~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~  101 (212)
                      .+=++.+|...-+   .|..+...+...+.+++.++.|++.|.+||.|.....+.                    .+..+
T Consensus       235 ~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~--------------------~~y~E  294 (382)
T 3pmm_A          235 NSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDP--------------------HSYLE  294 (382)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCT--------------------TSCEE
T ss_pred             ccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCCC--------------------CCCcc
Confidence            3445555555332   343222223345678999999999999999998432110                    01233


Q ss_pred             h--HHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCC-----c-----------cchhhHHHHHHH
Q 028222          102 C--TASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW-----G-----------VCFIYSTWWAIS  163 (212)
Q Consensus       102 ~--Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~-----~-----------~~~~~~T~~al~  163 (212)
                      +  ||....+|......  +.-.+++.++++|+++-|++..++||...+.-     +           ....++.+.+|+
T Consensus       295 sSatA~~ay~ll~~~~~--g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~v~~gt~~g~~~~~Y~~~p~~~~~~G~~~~ll  372 (382)
T 3pmm_A          295 ASATAGFAYGILKAVRK--RYVGQHYAGVAEKAIRGIVQNISPQGELLQTSFGTGMGSDLDFYRQIPLTSMPYGQAMAIL  372 (382)
T ss_dssp             HHHHHHHHHHHHHHHHT--TSSCGGGHHHHHHHHHHHHHTBCTTSCBCSCBCCCCCCSSHHHHHTCCBCCCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHhhCCCCCCEeCeecCCCCCCChhhhhcccCCCCCccHHHHHH
Confidence            4  44444455443331  11124567899999999999999999663211     1           012467777777


Q ss_pred             HHHHc
Q 028222          164 GLVAA  168 (212)
Q Consensus       164 aL~~~  168 (212)
                      |+.+.
T Consensus       373 a~~e~  377 (382)
T 3pmm_A          373 CLTEY  377 (382)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}

Probab=95.46  E-value=0.18  Score=44.41  Aligned_cols=94  Identities=12%  Similarity=0.031  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHhhCCc--cchhHHHHHHHHHHHHHHhccccCCCcCCCCcc----chhhHHHHHHHHHHH---cCcCC-
Q 028222          103 TASALKAMTLFQKLYPK--HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV----CFIYSTWWAISGLVA---AEKTY-  172 (212)
Q Consensus       103 Ta~al~aL~~~~~~~~~--~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~----~~~~~T~~al~aL~~---~g~~~-  172 (212)
                      .+-++.+|.......|.  -.++++.+.+++.++.|++.|.+||.|......    ..+.+|++...+|..   .|... 
T Consensus       268 nGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~  347 (445)
T 3k11_A          268 NGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDA  347 (445)
T ss_dssp             HHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCH
T ss_pred             chHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCH
Confidence            44566777665544332  134667888999999999999999999642211    123456665555643   45432 


Q ss_pred             -CChHHHHHHHHHHHhcccCCCccc
Q 028222          173 -SNCLAIRKATDFLLNIQCDDGGWG  196 (212)
Q Consensus       173 -~~~~~i~~a~~~Ll~~Q~~dGgw~  196 (212)
                       ...++++|+++.|+++-++||--+
T Consensus       348 ~~Y~~~A~ka~~~L~~~i~~dG~l~  372 (445)
T 3k11_A          348 IAYGPVAQLGWHAVAGKINEEGQVE  372 (445)
T ss_dssp             HHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCEe
Confidence             135789999999999988998543

>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}

Probab=95.34  E-value=0.11  Score=44.28  Aligned_cols=127  Identities=16%  Similarity=0.212  Sum_probs=74.3

Q ss_pred             HHHHHHHH-HhcccCCCce-eecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHH
Q 028222           52 FYDAANFM-LYIQSKTGGI-TGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI  129 (212)
Q Consensus        52 i~~av~~L-l~~Q~~dGgw-~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i  129 (212)
                      +++.+.|. ...++.+||| ..+..+...     . |.|         -.+...+..|.+++......  .+++++.+.+
T Consensus        17 ~~~~l~fw~~~~~D~~GGf~~~~~~d~~~-----~-~~e---------K~l~~nar~i~~~a~a~~~~--~~~~~~~~~A   79 (388)
T 2gz6_A           17 LNDVLPFWENHSLDSEGGYFTCLDRQGKV-----Y-DTD---------KFIWLQNRQVWTFSMLCNQL--EKRENWLKIA   79 (388)
T ss_dssp             HHTHHHHHHHHCBCTTSSBCCEEBTTSCE-----E-ECC---------EEHHHHHHHHHHHHHHHHHT--CCCHHHHHHH
T ss_pred             HHhHHHHHHhcCCCCCCCEEeEECCCCCc-----C-Ccc---------hhHHHHHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence            45677777 4466668885 555433210     1 011         12335778888888765531  1235567889


Q ss_pred             HHHHHHHHhc-cccCCCcCCCC--------ccchhhHHHHHHHHHHHcCcC---CCChHHHHHHHHHHHhcccC-CCcc
Q 028222          130 TNGVKFTEDS-QKLDGSWYGTW--------GVCFIYSTWWAISGLVAAEKT---YSNCLAIRKATDFLLNIQCD-DGGW  195 (212)
Q Consensus       130 ~ra~~~L~~~-Q~~dG~w~g~~--------~~~~~~~T~~al~aL~~~g~~---~~~~~~i~~a~~~Ll~~Q~~-dGgw  195 (212)
                      +++++||++. +.++|+|+...        .....+..++++.||+.+...   +...+..++..++|++...+ +|.|
T Consensus        80 ~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~~d~~g~~  158 (388)
T 2gz6_A           80 RNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRKDNPKGKY  158 (388)
T ss_dssp             HHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            9999999998 67789986332        123457888899998764321   11234566677888877643 3443

>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}

Probab=94.78  E-value=0.21  Score=42.38  Aligned_cols=162  Identities=8%  Similarity=-0.030  Sum_probs=84.5

Q ss_pred             CCcc-c-cccCCCCCC---CCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhc-ccCCCceeecCCCCChhh
Q 028222            7 KGGW-T-FSDKDHGLP---VSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYI-QSKTGGITGWEPAGAPSW   80 (212)
Q Consensus         7 ~Ggw-~-~~~~~~~~~---~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~-Q~~dGgw~~~~~~~~~~~   80 (212)
                      .||| + |++.....|   ...++|..+.++..+.+.-   .+.+...+.++++++||++. ++++|||....... .. 
T Consensus        32 ~GGf~~~~~~d~~~~~~eK~l~~nar~i~~~a~a~~~~---~~~~~~~~~A~~~~~~l~~~~~~~~Gg~~~~~d~d-g~-  106 (388)
T 2gz6_A           32 EGGYFTCLDRQGKVYDTDKFIWLQNRQVWTFSMLCNQL---EKRENWLKIARNGAKFLAQHGRDDEGNWYFALTRG-GE-  106 (388)
T ss_dssp             TSSBCCEEBTTSCEEECCEEHHHHHHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHHHHSBCTTSCBCSEECTT-SC-
T ss_pred             CCCEEeEECCCCCcCCcchhHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC-CC-
Confidence            7785 4 655322111   1447888888888754410   13455678899999999987 77899986321100 00 


Q ss_pred             hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccc-cCCCcCCCCcc----chh
Q 028222           81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQK-LDGSWYGTWGV----CFI  155 (212)
Q Consensus        81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~-~dG~w~g~~~~----~~~  155 (212)
                                  ...+.......+.++.+|+.+.....   .+++.+...+.++++++... ++|.|...+..    ...
T Consensus       107 ------------~~~~~~~~~~~af~i~al~~~y~~tg---~~~~l~~A~~~~~~i~~~~~d~~g~~~~~~~~~~~~~~~  171 (388)
T 2gz6_A          107 ------------PLVQPYNIFSDCFAAMAFSQYALASG---EEWAKDVAMQAYNNVLRRKDNPKGKYTKTYPGTRPMKAL  171 (388)
T ss_dssp             ------------BCCCCCCHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHTC--------------CCCCEET
T ss_pred             ------------cccCCcchHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCcccCcccCCCCCCCCC
Confidence                        00012233456778888877654322   24456778888999998874 34544221110    001


Q ss_pred             hHHHHHHHHHHHcCcCC---CChHHHHHHHHHHHhc
Q 028222          156 YSTWWAISGLVAAEKTY---SNCLAIRKATDFLLNI  188 (212)
Q Consensus       156 ~~T~~al~aL~~~g~~~---~~~~~i~~a~~~Ll~~  188 (212)
                      ...+..+.+|.++....   ...+.+++.++.+.+.
T Consensus       172 ~~~~~~~~all~l~~~t~d~~~~~~A~~~~~~~~~~  207 (388)
T 2gz6_A          172 AVPMILANLTLEMEWLLPQETLENVLAATVQEVMGD  207 (388)
T ss_dssp             HHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            23345555666554321   1233455556666554

>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*

Probab=94.53  E-value=0.098  Score=44.76  Aligned_cols=101  Identities=13%  Similarity=0.050  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhhc-CCCCCcCCCCcHHHHHHHHHHHHhcccC-CCceeecCCCCChhhhhhcCcccccchhhcccCccchH
Q 028222           26 SESFVCCLHLST-MPPEIVGEKMEPERFYDAANFMLYIQSK-TGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECT  103 (212)
Q Consensus        26 a~~l~al~~~~~-~~~~~~~~~~~~~~i~~av~~Ll~~Q~~-dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~T  103 (212)
                      +=++.+|..+.+ .|.....++...+..++.+++|+..|++ ||-|...-...          .  +     ..+..+++
T Consensus       216 gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld~~----------~--~-----~~~~~EsS  278 (373)
T 1nc5_A          216 GWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKG----------D--R-----SDNWLESS  278 (373)
T ss_dssp             HHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCT----------T--S-----TTCCBCHH
T ss_pred             hHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceeeecCCC----------C--C-----CCCCcccc
Confidence            446677766444 3432222233456788999999999997 99987321100          0  0     01223444


Q ss_pred             HHHHH--HHHHHHhhCCccchhHHHHHHHHHHHHHHhc---cccCCC
Q 028222          104 ASALK--AMTLFQKLYPKHKKNEVNNFITNGVKFTEDS---QKLDGS  145 (212)
Q Consensus       104 a~al~--aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~---Q~~dG~  145 (212)
                      +.++.  +|......  ++-.+++.+++.|+++.|.+.   .++||.
T Consensus       279 atA~~ay~l~~g~~~--g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~  323 (373)
T 1nc5_A          279 GSCLYMYAIAKGINK--GYLDRAYETTLLKAYQGLIQHKTETSEDGA  323 (373)
T ss_dssp             HHHHHHHHHHHHHHH--TSSCGGGHHHHHHHHHHHHHHHEEECTTSC
T ss_pred             HHHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHHHHHhceeECCCCC
Confidence            44443  44432211  111145778999999999884   578884

>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*

Probab=94.17  E-value=1.7  Score=36.94  Aligned_cols=92  Identities=14%  Similarity=0.111  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhhCCcc--chhHHHHHHHHHHHHHHhcccc-CCCcCCCCc-----c--chhhHHHHHHHHHHHc---C
Q 028222          103 TASALKAMTLFQKLYPKH--KKNEVNNFITNGVKFTEDSQKL-DGSWYGTWG-----V--CFIYSTWWAISGLVAA---E  169 (212)
Q Consensus       103 Ta~al~aL~~~~~~~~~~--~~~~i~~~i~ra~~~L~~~Q~~-dG~w~g~~~-----~--~~~~~T~~al~aL~~~---g  169 (212)
                      .+-++.+|..+....|..  .++++.+..++.+++|++.|.+ ||.|.....     .  ..+.+|++...+|...   |
T Consensus       215 ~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g  294 (373)
T 1nc5_A          215 IGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKG  294 (373)
T ss_dssp             HHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCC
Confidence            444777777765543321  3456778889999999999997 999863211     1  1234566666666542   4


Q ss_pred             cC-CCChHHHHHHHHHHHhc---ccCCCc
Q 028222          170 KT-YSNCLAIRKATDFLLNI---QCDDGG  194 (212)
Q Consensus       170 ~~-~~~~~~i~~a~~~Ll~~---Q~~dGg  194 (212)
                      .. ....++++|+++.|++.   .++||-
T Consensus       295 ~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~  323 (373)
T 1nc5_A          295 YLDRAYETTLLKAYQGLIQHKTETSEDGA  323 (373)
T ss_dssp             SSCGGGHHHHHHHHHHHHHHHEEECTTSC
T ss_pred             CCcHHHHHHHHHHHHHHHHhceeECCCCC
Confidence            32 23578999999999884   477883

>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A

Probab=93.69  E-value=0.35  Score=41.55  Aligned_cols=96  Identities=11%  Similarity=0.051  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHhh--CCc-c-chhHHHHHHHHHHHHHHhccccCCCcCCCCcc----chhhHHHHHHHHHHH---cCcC
Q 028222          103 TASALKAMTLFQKL--YPK-H-KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV----CFIYSTWWAISGLVA---AEKT  171 (212)
Q Consensus       103 Ta~al~aL~~~~~~--~~~-~-~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~----~~~~~T~~al~aL~~---~g~~  171 (212)
                      .+-++.+|....+.  .|. + .++++.+.+++.+++|++.|.+||.|......    ..+.+|++...+|..   .|..
T Consensus       235 ~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l  314 (382)
T 3pmm_A          235 NSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYV  314 (382)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSS
T ss_pred             ccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCC
Confidence            34467777665543  222 1 34567788999999999999999999632211    123456666666544   3432


Q ss_pred             -CCChHHHHHHHHHHHhcccCCCccccc
Q 028222          172 -YSNCLAIRKATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       172 -~~~~~~i~~a~~~Ll~~Q~~dGgw~~~  198 (212)
                       ....++++|+++.|+++.++||.-+..
T Consensus       315 ~~~Y~~~a~ka~~~l~~~i~~dG~l~~v  342 (382)
T 3pmm_A          315 GQHYAGVAEKAIRGIVQNISPQGELLQT  342 (382)
T ss_dssp             CGGGHHHHHHHHHHHHHTBCTTSCBCSC
T ss_pred             cHHHHHHHHHHHHHHHhhCCCCCCEeCe
Confidence             224789999999999999999976544

>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*

Probab=93.35  E-value=0.68  Score=44.88  Aligned_cols=119  Identities=12%  Similarity=0.029  Sum_probs=75.5

Q ss_pred             CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc-cCCCceeecC-CCCChhhhhhcCcccccchhh
Q 028222           17 HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ-SKTGGITGWE-PAGAPSWIELLNPIEFLDEVI   94 (212)
Q Consensus        17 ~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q-~~dGgw~~~~-~~~~~~~~~~l~~~e~~~~~~   94 (212)
                      +++.-.-|++.++++|+.++.           .+..++.++||.+.| +++|.|..-. .+....          +    
T Consensus       326 Yry~W~RDaa~t~~all~~G~-----------~e~A~~~l~~L~~~Q~~~~G~~~~~y~i~G~~~----------w----  380 (1020)
T 1ulv_A          326 YHAVWARDMYQSVTALLAAGD-----------EEAAARGVEWLFTYQQQPDGHFPQTSRVDGTIG----------Q----  380 (1020)
T ss_dssp             TCSBCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHTCCTTSCCCSCBCTTSCBC----------C----
T ss_pred             CceEccchHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHhcCCCCCeeeEEecCCCcC----------C----
Confidence            555667799999999988742           466789999999999 8999886321 111000          1    


Q ss_pred             cccCccchHHHHHHHHHHHHhhCCccchhHHHH-HHHHHHHHHHhccc--cCCCcCCCCccchhhHHHHHHHHHHH
Q 028222           95 IEHDYVECTASALKAMTLFQKLYPKHKKNEVNN-FITNGVKFTEDSQK--LDGSWYGTWGVCFIYSTWWAISGLVA  167 (212)
Q Consensus        95 ~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~-~i~ra~~~L~~~Q~--~dG~w~g~~~~~~~~~T~~al~aL~~  167 (212)
                       .....|.++..|.++..+.+.    + .++-+ .++++++|+.+.-.  ..+-|..+.+ .+.+..+++..||.+
T Consensus       381 -~~~Q~D~~g~~l~~~~~~~~~----d-~~~w~~~v~~al~~i~~~g~~~~~~~WEe~~g-~~~~t~~~~~~AL~~  449 (1020)
T 1ulv_A          381 -NGIQLDETAFPILLANQIGRT----D-AGFYRNELKPAADYLVAAGPKTPQERWEETGG-YSTSTLASQIAALAA  449 (1020)
T ss_dssp             -CCCBTHHHHHHHHHHHHHTCC----C-HHHHHHTHHHHHHHHHHHCSCBSBCTTSSCCB-EEHHHHHHHHHHHHH
T ss_pred             -CCccCccchHHHHHHHHHHhc----C-HHHHHHHHHHHHHHHHHhCCCCChhhhcccCC-cCHHHHHHHHHHHHH
Confidence             112347789888888876432    2 34445 89999999998742  2244433322 234555555566644

>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}

Probab=93.03  E-value=0.86  Score=39.11  Aligned_cols=132  Identities=11%  Similarity=0.080  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHH-hcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHH
Q 028222           49 PERFYDAANFML-YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNN  127 (212)
Q Consensus        49 ~~~i~~av~~Ll-~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~  127 (212)
                      ...+++.+.|-+ ..+.++|||..+-..... .   .+   .+      .-.+..++..|-+++......   ..++..+
T Consensus        12 ~~~~~~~l~fw~~~~~D~~GGf~~~l~~dg~-~---~~---~~------~k~l~~n~r~i~~~a~a~~~~---g~~~~l~   75 (402)
T 3gt5_A           12 RTHISDTMAFYHPRCIDSAGGFFHYFRDDGS-I---YN---AT------HRHLVSSTRFVFNYAMAYLQF---GTAEYLD   75 (402)
T ss_dssp             HHHHHHHHHHHTTTTBCTTSSBCCEECTTSC-E---EE---SS------EEEHHHHHHHHHHHHHHHHHH---CCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcCeeeEECCCCC-C---CC---CC------chhHHHHHHHHHHHHHHHHhh---CChHHHH
Confidence            355678888754 556688999643211100 0   00   00      011234777888887765432   2355678


Q ss_pred             HHHHHHHHHHhc-cccC-CCcCCCC-------ccchhhHHHHHHHHHHHcCcC--CCChHHHHHHHHHHHhcc-cC-CCc
Q 028222          128 FITNGVKFTEDS-QKLD-GSWYGTW-------GVCFIYSTWWAISGLVAAEKT--YSNCLAIRKATDFLLNIQ-CD-DGG  194 (212)
Q Consensus       128 ~i~ra~~~L~~~-Q~~d-G~w~g~~-------~~~~~~~T~~al~aL~~~g~~--~~~~~~i~~a~~~Ll~~Q-~~-dGg  194 (212)
                      .++++++||++. .+++ |+|.-..       .....|..++++.||+.+...  +.....+++..++|++.- .+ .|+
T Consensus        76 ~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~Af~i~al~~~~~tgd~~~l~~A~~l~~~i~~~f~d~~~G~  155 (402)
T 3gt5_A           76 AVHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSCGLKVGIKQAREWMDETWCLLERHFWDAEYGL  155 (402)
T ss_dssp             HHHHHHHHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTEETTTTE
T ss_pred             HHHHHHHHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcCCcCCC
Confidence            899999999886 4456 8885332       113467888998888864222  113456666777887763 33 455


Q ss_pred             cc
Q 028222          195 WG  196 (212)
Q Consensus       195 w~  196 (212)
                      +.
T Consensus       156 ~~  157 (402)
T 3gt5_A          156 YK  157 (402)
T ss_dssp             EC
T ss_pred             ch
Confidence            54

>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A

Probab=92.10  E-value=0.89  Score=40.46  Aligned_cols=139  Identities=12%  Similarity=0.092  Sum_probs=77.7

Q ss_pred             cccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCC--CcHHHHHHHHHH---HHhcccCCCceee----------cCCCC
Q 028222           12 FSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEK--MEPERFYDAANF---MLYIQSKTGGITG----------WEPAG   76 (212)
Q Consensus        12 ~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~--~~~~~i~~av~~---Ll~~Q~~dGgw~~----------~~~~~   76 (212)
                      ++..++++..+-|.+.++.+|+.+...     +..  ...+.+++-++|   |....+++|.|..          |..+.
T Consensus        58 tsnpDYrY~W~RDaa~t~~aL~~~g~~-----~~~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~~~~~~glgep~y~vdG  132 (492)
T 2fba_A           58 TSNPDYYYQWTRDSAITFLTVLSELED-----NNFNTTLAKAVEYYINTSYNLQRTSNPSGSFDDENHKGLGEPKFNTDG  132 (492)
T ss_dssp             BSSSBCCSEEHHHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHHHHHHHHHHTSCBTTBCTTSGGGGGGGCCEECTTS
T ss_pred             CCCCCCeEEccchHHHHHHHHHHhCcc-----cccccchHHHHHHHHHHHHHHhcccCCCCCcCcccccccCceeeccCC
Confidence            344567777788999999999887531     000  014556777775   4444588998862          21111


Q ss_pred             ChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCC--ccc--------------hhHH-HHHHHHHHHHHHhc
Q 028222           77 APSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYP--KHK--------------KNEV-NNFITNGVKFTEDS  139 (212)
Q Consensus        77 ~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~--~~~--------------~~~i-~~~i~ra~~~L~~~  139 (212)
                      ..           |.. .+...-.|.++..+.+|..+.....  +..              ...+ .+.|++.++||.+.
T Consensus       133 ~~-----------~~~-~w~~~Q~D~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~  200 (492)
T 2fba_A          133 SA-----------YTG-AWGRPQNDGPALRAYAISRYLNDVNSLNEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGY  200 (492)
T ss_dssp             CB-----------CCS-CCSCCBTTHHHHHHHHHHHHHHHHHHHSTTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHH
T ss_pred             Cc-----------CCc-ccCCccccchhHHHHHHHHHHHHhhccccchhhhhhhccccccccHHHHHHHHHHHHHHHHHh
Confidence            00           000 0122334678888877765432110  100              0233 36899999999988


Q ss_pred             cccC--CCcCCCCccchhhHHHHHHHHHHHc
Q 028222          140 QKLD--GSWYGTWGVCFIYSTWWAISGLVAA  168 (212)
Q Consensus       140 Q~~d--G~w~g~~~~~~~~~T~~al~aL~~~  168 (212)
                      -++.  |-|..+.+ .+.+..+.+..||.++
T Consensus       201 w~~pd~dlWEer~g-~~~~T~~~~~~AL~~a  230 (492)
T 2fba_A          201 WDSTGFDLWEENQG-RHFFTSLVQQKALAYA  230 (492)
T ss_dssp             TTSCEECTTSCCEE-CCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCcCccCC-CChHHHHHHHHHHHHH
Confidence            6543  55533322 3566666677777543

>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3

Probab=91.59  E-value=1.6  Score=37.20  Aligned_cols=131  Identities=11%  Similarity=0.036  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHH-hccc-CCCceeec-CCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHH
Q 028222           50 ERFYDAANFML-YIQS-KTGGITGW-EPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVN  126 (212)
Q Consensus        50 ~~i~~av~~Ll-~~Q~-~dGgw~~~-~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~  126 (212)
                      ..+++++.+.. .... ..|||..+ ..+...     .|          .+-.+...+..|.+++......+....+++.
T Consensus        17 ~~~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~-----~~----------~~k~l~~nar~l~~~a~a~~~~~~~~~~~~l   81 (402)
T 1fp3_A           17 QELDRVMAFWLEHSHDREHGGFFTCLGRDGRV-----YD----------DLKYVWLQGRQVWMYCRLYRKLERFHRPELL   81 (402)
T ss_dssp             HHHHHHHHHHHHHSBCTTTSSBCCCBCTTSCB-----SC----------CCEEHHHHHHHHHHHHHHHHHCGGGCCHHHH
T ss_pred             HHHHHHHHHhhccCCCCCCCCEeeEECCCCCC-----CC----------CccchhhhHHHHHHHHHHHHHhcccCCHHHH
Confidence            34678888888 4554 47888532 221110     00          0112334667777777655432001235567


Q ss_pred             HHHHHHHHHHHhc-cccCC--CcCCCC----c----cchhhHHHHHHHHHHHcCc---CCCChHHHHHHHHHHHhcc--c
Q 028222          127 NFITNGVKFTEDS-QKLDG--SWYGTW----G----VCFIYSTWWAISGLVAAEK---TYSNCLAIRKATDFLLNIQ--C  190 (212)
Q Consensus       127 ~~i~ra~~~L~~~-Q~~dG--~w~g~~----~----~~~~~~T~~al~aL~~~g~---~~~~~~~i~~a~~~Ll~~Q--~  190 (212)
                      +.++++++||++. ++++|  +|.-..    .    ....|.-++.+.++..+-.   .....+.+++.++++++.-  .
T Consensus        82 ~~A~~~~~fl~~~~~d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d~  161 (402)
T 1fp3_A           82 DAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVRED  161 (402)
T ss_dssp             HHHHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhccCcCCCCceEEEECCCCCccccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccC
Confidence            8999999999998 56565  675321    1    1234566777777765422   1112345556666776654  3


Q ss_pred             CCCcc
Q 028222          191 DDGGW  195 (212)
Q Consensus       191 ~dGgw  195 (212)
                      +.|.|
T Consensus       162 ~~G~f  166 (402)
T 1fp3_A          162 PSGLG  166 (402)
T ss_dssp             GGGGC
T ss_pred             CCccc
Confidence            45665

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=91.45  E-value=0.47  Score=43.33  Aligned_cols=138  Identities=11%  Similarity=-0.008  Sum_probs=72.4

Q ss_pred             cccCCCCCCCCccHHHHHHHHHHhh-cCCCCCcCCCCcHHHHHHHHHHHHh---cc---cCCCceee----cCCCCChhh
Q 028222           12 FSDKDHGLPVSDCSSESFVCCLHLS-TMPPEIVGEKMEPERFYDAANFMLY---IQ---SKTGGITG----WEPAGAPSW   80 (212)
Q Consensus        12 ~~~~~~~~~~~d~Ta~~l~al~~~~-~~~~~~~~~~~~~~~i~~av~~Ll~---~Q---~~dGgw~~----~~~~~~~~~   80 (212)
                      ++.+++++.-+-|.+.+++||+... ..     |   ..+..++..+||..   .|   ++||.|..    .++.-   .
T Consensus        42 ts~pDYrY~W~RDaa~t~~aL~~~~~~~-----G---~~~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~~~l~E~~~---~  110 (599)
T 2vn4_A           42 TIDPDYYYMWTRDSALVFKNLIDRFTET-----Y---DAGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKF---E  110 (599)
T ss_dssp             CSSSCCCSEEHHHHHHHHHHHHHHHHHS-----B---CHHHHHHHHHHHHHHHHHHHCCBTTBCSTTSGGGGCCEE---C
T ss_pred             CCCCCCeEEchhhHHHHHHHHHHHHHhC-----C---CHHHHHHHHHHHhcccceeeeeCCCCCcccccCcCceEE---e
Confidence            3445777778889999999998321 10     1   24667788999974   67   89999841    11100   0


Q ss_pred             hhhcCcccccchhhcccCccch-----HHHHHHHHHHHHhhCCc-cchhHHHHHHHHHHHHHHhccccC--CCcCCCCcc
Q 028222           81 IELLNPIEFLDEVIIEHDYVEC-----TASALKAMTLFQKLYPK-HKKNEVNNFITNGVKFTEDSQKLD--GSWYGTWGV  152 (212)
Q Consensus        81 ~~~l~~~e~~~~~~~d~~~~~~-----Ta~al~aL~~~~~~~~~-~~~~~i~~~i~ra~~~L~~~Q~~d--G~w~g~~~~  152 (212)
                      +..    ..|.. .+...-.|.     ++.++.++. +...... .-...+-+.|+++++||.+..++.  |-|..+. .
T Consensus       111 ldG----~~~~~-~w~~~Q~D~~glr~~~~~~~~~~-~~~~g~~~~~~~~~w~~v~~~l~~v~~~w~~~d~dlWEer~-g  183 (599)
T 2vn4_A          111 LTL----KPFTG-NWGRPQRDGPALRAIALIGYSKW-LINNNYQSTVSNVIWPIVRNDLNYVAQYWNQTGFDLWEEVN-G  183 (599)
T ss_dssp             TTS----CBCCS-CCSCCCTHHHHHHHHHHHHHHHH-HHHTTCHHHHHHHTHHHHHHHHHHHHHHTTSCEECTTSCCE-E
T ss_pred             cCC----ccccC-cCCCeeccccchhHHHHHHHHHH-HHHhCCcccccHHHHHHHHHHHHHHHHhCCCCCCCeeeecC-C
Confidence            000    00100 001112223     444443333 2111110 011124478999999999997654  5553332 2


Q ss_pred             chhhHHHHHHHHHHH
Q 028222          153 CFIYSTWWAISGLVA  167 (212)
Q Consensus       153 ~~~~~T~~al~aL~~  167 (212)
                      .+.+..+.+..||.+
T Consensus       184 ~~~~T~~~~~~aL~~  198 (599)
T 2vn4_A          184 SSFFTVANQHRALVE  198 (599)
T ss_dssp             EEHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHH
Confidence            355666666677744

>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*

Probab=90.82  E-value=0.54  Score=43.49  Aligned_cols=116  Identities=10%  Similarity=0.043  Sum_probs=71.0

Q ss_pred             CCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecC-CCCChhhhhhcCcccccchhhcc
Q 028222           18 GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWE-PAGAPSWIELLNPIEFLDEVIIE   96 (212)
Q Consensus        18 ~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~-~~~~~~~~~~l~~~e~~~~~~~d   96 (212)
                      .+.-.-|.+.++++|+.++.           .+..++.++||.+.|+++|+|.... .+..+.               +.
T Consensus       338 ~~~W~RD~~~~~~al~~~G~-----------~~~a~~~l~~l~~~q~~~G~~~~~~~~~G~p~---------------w~  391 (684)
T 1lf6_A          338 HLVWSRDLYHVANAFIAAGD-----------VDSANRSLDYLAKVVKDNGMIPQNTWISGKPY---------------WT  391 (684)
T ss_dssp             GSBCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHHSSCCSCBCTTSCBC---------------CC
T ss_pred             EEEeccHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhcCCCCCcccceeCCCCcc---------------cC
Confidence            34556789999999998742           4678899999999999999985211 110000               11


Q ss_pred             cCccchHHHHHHHHHHHHhhCCccchhHHHHH-HHHHHHHHHhcccc--CCCcCCCCccchhhHHHHHHHHHHH
Q 028222           97 HDYVECTASALKAMTLFQKLYPKHKKNEVNNF-ITNGVKFTEDSQKL--DGSWYGTWGVCFIYSTWWAISGLVA  167 (212)
Q Consensus        97 ~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~-i~ra~~~L~~~Q~~--dG~w~g~~~~~~~~~T~~al~aL~~  167 (212)
                      ..-.|.++..|.++..+...    .   +-+. ++++++|+.+.-..  .|-|....+. ..+..+++..||.+
T Consensus       392 ~~Q~D~~g~~l~~~~~~~~~----g---~~~~~v~~al~~i~~~~~~~~~g~WE~~~g~-~~~t~~~~~~aL~~  457 (684)
T 1lf6_A          392 GIQLDEQADPIILSYRLKRY----D---LYDSLVKPLADFIIKIGPKTGQERWEEIGGY-SPATMAAEVAGLTC  457 (684)
T ss_dssp             CCCHHHHHHHHHHHHHTTCG----G---GTTTTHHHHHHHHHHHCSSBSSCTTSSCCBB-CHHHHHHHHHHHHH
T ss_pred             CccccchHHHHHHHHHHHHc----C---chHHHHHHHHHHHHHhCCCCCcccccccCCc-CHHHHHHHHHHHHH
Confidence            22356788888776644321    1   3456 99999999987533  3445332222 23444455555544

>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*

Probab=90.56  E-value=1.4  Score=40.67  Aligned_cols=130  Identities=11%  Similarity=0.078  Sum_probs=74.6

Q ss_pred             cHHHHHHHHHHHHhcccC--CCceeecCCCCChhhhhhcCcccccch-hhcccCc--cchHHHHHHHHHHHHhhCCccch
Q 028222           48 EPERFYDAANFMLYIQSK--TGGITGWEPAGAPSWIELLNPIEFLDE-VIIEHDY--VECTASALKAMTLFQKLYPKHKK  122 (212)
Q Consensus        48 ~~~~i~~av~~Ll~~Q~~--dGgw~~~~~~~~~~~~~~l~~~e~~~~-~~~d~~~--~~~Ta~al~aL~~~~~~~~~~~~  122 (212)
                      ..+.+.+++.-|+.++.+  .|++-.....   .|-+.      .++ ...|+..  +-..+.++++|..++.       
T Consensus       294 ~~~~~~rs~~~Lk~l~~~~~~G~iiAs~t~---~~~e~------~~~~~~~dY~~~W~RD~~~~~~al~~~G~-------  357 (684)
T 1lf6_A          294 ANSLYYNSMMILKASEDKTNKGAYIASLSI---PWGDG------QRDDNTGGYHLVWSRDLYHVANAFIAAGD-------  357 (684)
T ss_dssp             CCHHHHHHHHHHHTTBCSSSTTCBCSCSSC---TTGGG------SBSBSCCGGGSBCHHHHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHHHhccCCCCCccEEeecCC---CCccc------cCCCCCCCCEEEeccHHHHHHHHHHHcCC-------
Confidence            356778888888877763  6776321110   00000      000 1112222  1235566677776642       


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCcCCC--------CccchhhHHHHHHHHHHHcCcCCCChHH-HHHHHHHHHhccc--C
Q 028222          123 NEVNNFITNGVKFTEDSQKLDGSWYGT--------WGVCFIYSTWWAISGLVAAEKTYSNCLA-IRKATDFLLNIQC--D  191 (212)
Q Consensus       123 ~~i~~~i~ra~~~L~~~Q~~dG~w~g~--------~~~~~~~~T~~al~aL~~~g~~~~~~~~-i~~a~~~Ll~~Q~--~  191 (212)
                         .+..++.++||.+.|.++|+|...        |+......++..+.++..+.... ..+. ++++++|+.+.-.  .
T Consensus       358 ---~~~a~~~l~~l~~~q~~~G~~~~~~~~~G~p~w~~~Q~D~~g~~l~~~~~~~~~g-~~~~~v~~al~~i~~~~~~~~  433 (684)
T 1lf6_A          358 ---VDSANRSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYD-LYDSLVKPLADFIIKIGPKTG  433 (684)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGG-GTTTTHHHHHHHHHHHCSSBS
T ss_pred             ---HHHHHHHHHHHHhhcCCCCCcccceeCCCCcccCCccccchHHHHHHHHHHHHcC-chHHHHHHHHHHHHHhCCCCC
Confidence               145788999999999999988532        33223456666666665544332 4667 9999999998643  2


Q ss_pred             CCcccc
Q 028222          192 DGGWGE  197 (212)
Q Consensus       192 dGgw~~  197 (212)
                      .|-|..
T Consensus       434 ~g~WE~  439 (684)
T 1lf6_A          434 QERWEE  439 (684)
T ss_dssp             SCTTSS
T ss_pred             cccccc
Confidence            344554

>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}

Probab=86.80  E-value=3  Score=35.69  Aligned_cols=141  Identities=9%  Similarity=0.007  Sum_probs=76.8

Q ss_pred             cHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhc-ccCC-CceeecCCCCChhhhhhcCcccccchhhc-ccCcc
Q 028222           24 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYI-QSKT-GGITGWEPAGAPSWIELLNPIEFLDEVII-EHDYV  100 (212)
Q Consensus        24 ~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~-Q~~d-Ggw~~~~~~~~~~~~~~l~~~e~~~~~~~-d~~~~  100 (212)
                      +++..|.++..+...    .+.+...+.++++++||++. .+++ |||..-..+  .              ... ....+
T Consensus        53 ~n~r~i~~~a~a~~~----~g~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~d--G--------------~~~~~~~~l  112 (402)
T 3gt5_A           53 SSTRFVFNYAMAYLQ----FGTAEYLDAVHHGLSYVRDVHRNPATGGYAWTLCD--D--------------RVEDDTNHC  112 (402)
T ss_dssp             HHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHTTBCTTTSCBCSEEET--T--------------EEEECCEEH
T ss_pred             HHHHHHHHHHHHHHh----hCChHHHHHHHHHHHHHHHhCccCCCCcEEEEeeC--C--------------CCCcCCcch
Confidence            568888888775331    13455678899999999874 5556 888622110  0              000 11234


Q ss_pred             chHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcc-ccC-CCcC----CCCcc---chhhHHHHHHHHHHHcCc-
Q 028222          101 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ-KLD-GSWY----GTWGV---CFIYSTWWAISGLVAAEK-  170 (212)
Q Consensus       101 ~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q-~~d-G~w~----g~~~~---~~~~~T~~al~aL~~~g~-  170 (212)
                      ..-+.+|.+|+.+...    ..++..+.+.+..++|.+.. .++ |++.    ..|..   ......+.++.+|.++.. 
T Consensus       113 yd~Af~i~al~~~~~t----gd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~~~~~~~~~~~~~n~~m~l~eall~L~~~  188 (402)
T 3gt5_A          113 YGLAFVMLAYSCGLKV----GIKQAREWMDETWCLLERHFWDAEYGLYKDEADAQWNFTRYRGQNANMHMCEAMLAAYEA  188 (402)
T ss_dssp             HHHHHHHHHHHHHHHT----TCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTCCBCSCEEHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh----CChhHHHHHHHHHHHHHHHhcCCcCCCchhhhCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence            4567888888875432    12334567788888998874 444 5443    12211   112233444445544422 


Q ss_pred             --CCCChHHHHHHHHHHHhc
Q 028222          171 --TYSNCLAIRKATDFLLNI  188 (212)
Q Consensus       171 --~~~~~~~i~~a~~~Ll~~  188 (212)
                        +....+.+++.++.++..
T Consensus       189 tgd~~~~~~a~~l~~~~~~~  208 (402)
T 3gt5_A          189 SGEQRYLERALVLADRITRR  208 (402)
T ss_dssp             HCCHHHHHHHHHHHHHHHTH
T ss_pred             hCCHHHHHHHHHHHHHHHHH
Confidence              211244555666666654

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=86.06  E-value=0.8  Score=28.76  Aligned_cols=29  Identities=10%  Similarity=0.143  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCC
Q 028222          158 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDD  192 (212)
Q Consensus       158 T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~d  192 (212)
                      .-.|..||.+.+..      ++||++||.++..+.
T Consensus        33 ~~qA~kALKat~~N------vErAaDWLFSH~D~~   61 (63)
T 1wgn_A           33 YECVLRAMKKKGEN------IEQILDYLFAHSGPS   61 (63)
T ss_dssp             HHHHHHHHHHHCSC------HHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHcCCC------HHHHHHHHHhCCCCC
Confidence            34577888887654      899999999997764

>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}

Probab=85.37  E-value=6.3  Score=35.79  Aligned_cols=87  Identities=15%  Similarity=0.124  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccc--cc--------hhhcccCccchHHHHHHHHHHHHhh--
Q 028222           49 PERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEF--LD--------EVIIEHDYVECTASALKAMTLFQKL--  116 (212)
Q Consensus        49 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~--~~--------~~~~d~~~~~~Ta~al~aL~~~~~~--  116 (212)
                      .+.++=++|||+++|.++|++-.-..+.   |-+...+.++  +.        ...++.  ...++..+.+|+.....  
T Consensus       193 ldE~rWg~D~llkm~~~~g~~y~qVgd~---W~~d~~~R~~~~~~~~~~~~~~~y~~~~--~~~agl~aAALA~Asrvf~  267 (586)
T 3h7l_A          193 IEEALFGADFLVRMQNEKGFFYMTVFDK---WSKDTAQREICAYETQLGHKFDDYQAGF--RQGGGVAIAALAAASRLGV  267 (586)
T ss_dssp             HHHHHHHHHHHHHTBCTTSCBBCEEECT---TCCCGGGCEEEEEETTTTEEESCCBCCG--GGTHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHHHhcccCCCeEEEEecCC---CCCCCCccccccccCCCCCCCcceecCC--CCcHHHHHHHHHHHhcccC
Confidence            3566778899999999999874222211   2110000110  00        001111  11244556677766554  


Q ss_pred             CCccchhHHHHHHHHHHHHHHhcc
Q 028222          117 YPKHKKNEVNNFITNGVKFTEDSQ  140 (212)
Q Consensus       117 ~~~~~~~~i~~~i~ra~~~L~~~Q  140 (212)
                      ++.++.+++..+.+++.+|+.+..
T Consensus       268 d~~~~a~~~L~aA~~a~~fa~~~~  291 (586)
T 3h7l_A          268 HGEYDQQKYRNAAENGYWHLKEHN  291 (586)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcChHHHHHHHHHHHHHHHhcC
Confidence            444545678888999999998874

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=84.90  E-value=1.1  Score=28.75  Aligned_cols=28  Identities=21%  Similarity=0.128  Sum_probs=22.6

Q ss_pred             HHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCC
Q 028222          160 WAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDG  193 (212)
Q Consensus       160 ~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dG  193 (212)
                      .++.||.+.+-+      |++|++||++.+...|
T Consensus        36 an~~AL~at~Gn------ve~Ave~L~~~~~~~~   63 (67)
T 2dna_A           36 ANLQALIATDGD------TNAAIYKLKSSQGFSG   63 (67)
T ss_dssp             HHHHHHHHTTSC------HHHHHHHHHHCCSSSC
T ss_pred             HHHHHHHHcCCC------HHHHHHHHHhCCCccC
Confidence            357888888754      8999999999987665

>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*

Probab=84.20  E-value=2.5  Score=37.31  Aligned_cols=138  Identities=9%  Similarity=-0.030  Sum_probs=68.7

Q ss_pred             cccCCCCCCCCccHHHHHHHHH---HhhcCCCCCcCCCCcHHHHHHHHHHHHh---cc---cCCCceeecCCCCChhhhh
Q 028222           12 FSDKDHGLPVSDCSSESFVCCL---HLSTMPPEIVGEKMEPERFYDAANFMLY---IQ---SKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus        12 ~~~~~~~~~~~d~Ta~~l~al~---~~~~~~~~~~~~~~~~~~i~~av~~Ll~---~Q---~~dGgw~~~~~~~~~~~~~   82 (212)
                      ++..++++..+-|.+.++.+|+   ..+.           .+..++..+||..   .|   +++|.|..-..++....+.
T Consensus        43 tsnpDYrY~W~RDaa~t~~aL~~~~~~G~-----------~~~a~~~~~~l~~~~~lQ~~~~~~G~l~~~glgE~~y~vd  111 (472)
T 1gai_A           43 TDNPDYFYTWTRDSGLVIKTLVDLFRNGD-----------TDLLSTIEHYISSQAIIQGVSNPSGDLSSGGLGEPKFNVD  111 (472)
T ss_dssp             BSSSBCCSEEHHHHHHHHHHHHHHHHTTC-----------GGGHHHHHHHHHHHHHHHHCCBTTBCTTTTGGGCCEECTT
T ss_pred             CCCCCCeEEchhhHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHhhcccCCCCccccCCCCCceEccC
Confidence            3445677778889999999998   4421           2334566666665   44   7889885100000000000


Q ss_pred             hcCcccccchhhcccCccch-----HHHHHHHHHHHHhhCCcc-chhHHHHHHHHHHHHHHhccccC--CCcCCCCccch
Q 028222           83 LLNPIEFLDEVIIEHDYVEC-----TASALKAMTLFQKLYPKH-KKNEVNNFITNGVKFTEDSQKLD--GSWYGTWGVCF  154 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~-----Ta~al~aL~~~~~~~~~~-~~~~i~~~i~ra~~~L~~~Q~~d--G~w~g~~~~~~  154 (212)
                      .    +.|.. .+...-.|.     ++.++.++. +....... -...+-+.|++.++||.+.-++.  |-|..+. ..+
T Consensus       112 G----~~~~~-~w~~~Q~D~~g~ra~~~~~~~~~-l~~~g~~~~~~~~~w~~i~~~l~~v~~~w~~pd~dlWEer~-g~~  184 (472)
T 1gai_A          112 E----TAYTG-SWGRPQRDGPALRATAMIGFGQW-LLDNGYTSAATEIVWPLVRNDLSYVAQYWNQTGYDLWEEVN-GSS  184 (472)
T ss_dssp             S----CBCCS-CCSCCCTHHHHHHHHHHHHHHHH-HHHTTCHHHHHHTHHHHHHHHHHHHHHHTTSCEECTTSCCE-EEE
T ss_pred             C----CccCC-cCCCccccccchhHHHHHHHHHH-HHHcCCccccchhHHHHHHHHHHHHHHhcCCCCCCCCcccC-CCC
Confidence            0    00000 001112233     444444433 22211100 01124467999999998886543  5553332 235


Q ss_pred             hhHHHHHHHHHHH
Q 028222          155 IYSTWWAISGLVA  167 (212)
Q Consensus       155 ~~~T~~al~aL~~  167 (212)
                      .+..+.+..||.+
T Consensus       185 ~~T~~~~~~AL~~  197 (472)
T 1gai_A          185 FFTIAVQHRALVE  197 (472)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666677754

>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}

Probab=82.70  E-value=7.7  Score=32.63  Aligned_cols=146  Identities=13%  Similarity=0.055  Sum_probs=80.3

Q ss_pred             CccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHH-HhcccC--CCceeecCCCCChhhhhhcCcccccchhhcccC
Q 028222           22 SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFM-LYIQSK--TGGITGWEPAGAPSWIELLNPIEFLDEVIIEHD   98 (212)
Q Consensus        22 ~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~L-l~~Q~~--dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~   98 (212)
                      .||-+...++++.+-+.    .+.+..-+...+..++| ...-++  .||+. +....           +.+.       
T Consensus        91 ~DD~a~~~la~~~aye~----t~~~~yL~~A~~l~~~l~~~~wd~~~gGGi~-W~~~~-----------~~~k-------  147 (349)
T 3k7x_A           91 YDDMLWNALAAYRLYKA----TGKSIYLEDAQLVWQDLVDTGWNDIMGGGFA-WRRPQ-----------MYYK-------  147 (349)
T ss_dssp             HHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHTBCSGGGSCBE-EETTE-----------EEEE-------
T ss_pred             ccHHHHHHHHHHHHHHH----HCCchHHHHHHHHHHHHHHhCCCCCCCCceE-ecCCC-----------cccc-------
Confidence            57888877777775442    13344555666777888 554344  47775 22110           0011       


Q ss_pred             ccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhc-cccCCCcCCC----C-c-----cchhhHHHHHHHHHHH
Q 028222           99 YVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDS-QKLDGSWYGT----W-G-----VCFIYSTWWAISGLVA  167 (212)
Q Consensus        99 ~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~-Q~~dG~w~g~----~-~-----~~~~~~T~~al~aL~~  167 (212)
                      .+-..+..+..|+++.....   ++++.+..++..+|+.+. .+++|.+...    . +     ...+|+.+..|.++..
T Consensus       148 naisN~~~~~~la~l~~~tg---d~~Yl~~A~~~~~w~~~~l~d~~g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l~g~~~  224 (349)
T 3k7x_A          148 NTPVNAPFIILSCWLYNELN---ETKYLEWAMKTYEWQTKVLVREDGFVEDGINRLEDGTIDYEWKFTYNQGVYIGANLE  224 (349)
T ss_dssp             EHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHBCTTSCBCCEECTTSSSCBCTTCCCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhcCCCCCCeEecCCccCCCCccCCcCeeeHHHHHHHHHHHH
Confidence            11135666777776655432   245677889999999875 3556555321    1 0     1356888888888876


Q ss_pred             cCc-C--CCChHHHHHHHHHHHhcccCCC
Q 028222          168 AEK-T--YSNCLAIRKATDFLLNIQCDDG  193 (212)
Q Consensus       168 ~g~-~--~~~~~~i~~a~~~Ll~~Q~~dG  193 (212)
                      +-. .  ....+.+++.++.+++.--++|
T Consensus       225 LY~~T~d~~yl~~a~~l~~~~~~~f~~~g  253 (349)
T 3k7x_A          225 LYRITKEAIYLDTANKTAAISLKELTEDG  253 (349)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHEETT
T ss_pred             HHHhhCcHHHHHHHHHHHHHHHHHhccCC
Confidence            522 1  1123344445555555433444

>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*

Probab=82.69  E-value=12  Score=32.06  Aligned_cols=44  Identities=7%  Similarity=0.059  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeec
Q 028222           25 SSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGW   72 (212)
Q Consensus        25 Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~   72 (212)
                      .+-.+.+|+.+.+.    .+.+...+.++++++|+++.+.++|.|+..
T Consensus       233 ~aGI~~~Ll~~~~~----~~~~~~~~~i~~~l~~l~~~~~~~g~wp~~  276 (411)
T 3e6u_A          233 LAGIYYYLMQPSLQ----VSQGKLHSLVKPSVDYVCQLKFPSGNYPPC  276 (411)
T ss_dssp             HHHHHHHHTCGGGC----CCHHHHHHTHHHHHHHHHHTCCTTSCCCSB
T ss_pred             HHHHHHHHHHHHhh----cChHHHHHHHHHHHHHHHHhhccCCCCCCC
Confidence            34445555544321    123334567999999999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	212
d1w6ka1	448	a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {	4e-61
d1w6ka1	448	a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {	3e-07
d2sqca1	352	a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla	2e-37
d1r76a_	408	a.102.5.1 (A:) Polygalacturonic acid lyase (pectat	8e-11
d1r76a_	408	a.102.5.1 (A:) Polygalacturonic acid lyase (pectat	4e-09
d1gxma_	324	a.102.5.1 (A:) Polygalacturonic acid lyase (pectat	5e-08
d1gxma_	324	a.102.5.1 (A:) Polygalacturonic acid lyase (pectat	0.002
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	7e-06
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	4e-05

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  194 bits (495), Expect = 4e-61
 Identities = 78/208 (37%), Positives = 120/208 (57%), Gaps = 4/208 (1%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
            +R + KGG++FS  D G  VSDC++E+    L L    P  V E +  ER  DA   +L
Sbjct: 149 YYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPH-VTEHIPRERLCDAVAVLL 207

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +++  GG   +E       +ELLNP E   +++I++ YVECT++ ++A+  F K +P+H
Sbjct: 208 NMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEH 267

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSN---CLA 177
           +  E+   +T G++F    Q+ DGSW G+WGVCF Y TW+ +       +TY +   C  
Sbjct: 268 RAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAE 327

Query: 178 IRKATDFLLNIQCDDGGWGESYLSCPNK 205
           + +A DFLL+ Q  DGGWGE + SC  +
Sbjct: 328 VSRACDFLLSRQMADGGWGEDFESCEER 355

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 16/112 (14%)

Query: 99  YVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSW-----------Y 147
           +   T   L+A     + Y   +       ++    F    Q  DG W           Y
Sbjct: 301 FTYGTWFGLEAFACMGQTY---RDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRY 357

Query: 148 GTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 199
                  I++T WA+ GL+A    + +  A  +    LL  Q  +G W +  
Sbjct: 358 VQSAQSQIHNTCWAMMGLMAVR--HPDIEAQERGVRCLLEKQLPNGDWPQEN 407

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

 Score =  131 bits (329), Expect = 2e-37
 Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 15/210 (7%)

Query: 1   MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 60
              ++  GG+ F   +   P    ++               +  E+   +       +++
Sbjct: 76  KRPNLKPGGFAFQFDNVYYPDVCDTAVVVWA-----LNTLRLPDERRRRDAMTKGFRWIV 130

Query: 61  YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH 120
            +QS  GG   ++          +   +F +  + +    + TA  L+        +   
Sbjct: 131 GMQSSNGGWGAYDVDNTSDLPNHIPFSDFGE--VTDPPSEDVTAHVLEC-------FGSF 181

Query: 121 KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRK 180
             ++    I   V++ +  QK DGSW+G WGV ++Y T   +S L A          I+K
Sbjct: 182 GYDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREP-YIQK 240

Query: 181 ATDFLLNIQCDDGGWGESYLSCPNKLHMNR 210
           A D++   Q  DGGWGE   S  +  +  +
Sbjct: 241 ALDWVEQHQNPDGGWGEDCRSYEDPAYAGK 270

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Length = 408

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

 Score = 58.1 bits (140), Expect = 8e-11
 Identities = 23/169 (13%), Positives = 44/169 (26%), Gaps = 27/169 (15%)

Query: 50  ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKA 109
           +       ++L  Q   GG     P          + I + D+ ++     E  +     
Sbjct: 175 DAALKGIEYLLASQFPNGGWPQVWPLEG----GYHDAITYNDDALV--HVAELLSDIAAG 228

Query: 110 MTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTW---------- 159
              F  + P  +           +    ++Q +       WG      T           
Sbjct: 229 RDGFGFVPPAIRT-RALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEP 287

Query: 160 ---------WAISGLVAAEK-TYSNCLAIRKATDFLLNIQCDDGGWGES 198
                      +  L+  E  + +   AIR    +L      D  W +S
Sbjct: 288 AALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWVKS 336

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Length = 408

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

 Score = 53.1 bits (127), Expect = 4e-09
 Identities = 18/180 (10%), Positives = 41/180 (22%), Gaps = 38/180 (21%)

Query: 54  DAANFMLYIQSKTGG----------ITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVEC- 102
             A+ ++  Q+  GG          +           +  +       +   + D+    
Sbjct: 85  HVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVG 144

Query: 103 ------TASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIY 156
                 T + ++ +          +     +    G+++   SQ  +G W   W +   Y
Sbjct: 145 TIDNDATVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGY 204

Query: 157 S---------TWWAISGLVAAEKTYSN------------CLAIRKATDFLLNIQCDDGGW 195
                            L                       A   A   ++  Q    G 
Sbjct: 205 HDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGK 264

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

 Score = 49.9 bits (119), Expect = 5e-08
 Identities = 22/165 (13%), Positives = 47/165 (28%), Gaps = 24/165 (14%)

Query: 50  ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKA 109
           +    AANF++  Q  TG +  + P          +   F D  +     V    +A K 
Sbjct: 89  DAVRKAANFLVNSQYSTGALPQFYPLKGGYS----DHATFNDNGMAYALTV-LDFAANKR 143

Query: 110 MTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTW---------- 159
                 ++  + +      +T G  +   +Q         W        +          
Sbjct: 144 APFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYEL 203

Query: 160 ---------WAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGW 195
                      ++ L+   +T     A+R    +  + +    G+
Sbjct: 204 ESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTYLEGY 248

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 177 AIRKATDFLLNIQCDDGGWGESY 199
           A+RKA +FL+N Q   G   + Y
Sbjct: 90  AVRKAANFLVNSQYSTGALPQFY 112

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 7e-06
 Identities = 24/160 (15%), Positives = 46/160 (28%), Gaps = 29/160 (18%)

Query: 41  EIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYV 100
           E++ E +      D   F+   QS  GG  G                           ++
Sbjct: 92  ELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYP---------------------HL 130

Query: 101 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGT-WGVCFIYSTW 159
             T +A+ A+ +          N         +++    ++ DGS+     G   + S +
Sbjct: 131 APTYAAVNALCIIGTEEAYDIIN-----REKLLQYLYSLKQPDGSFLMHVGGEVDVRSAY 185

Query: 160 WAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 199
            A S                   +++   Q  +GG G   
Sbjct: 186 CAASVASLTNII--TPDLFEGTAEWIARCQNWEGGIGGVP 223

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.1 bits (96), Expect = 4e-05
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 140 QKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES 198
           QK DGS+ G  WG      ++ A++ L    K   + + + KA +F+L+    DGG+G  
Sbjct: 121 QKEDGSFAGDIWGEIDTRFSFCAVATLALLGKL--DAINVEKAIEFVLSCMNFDGGFGCR 178

Query: 199 Y 199
            
Sbjct: 179 P 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	100.0
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	100.0
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.92
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.92
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	99.83
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	99.81
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	99.75
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	99.71
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	99.66
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.66
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.65
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	99.58
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	99.5
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	99.47
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	99.39
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	99.37
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	99.22
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	98.86
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	98.79
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	98.56
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	98.47
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	98.35
d1ulva1	413	Glucodextranase, domain A {Arthrobacter globiformi	96.56
d1lf6a1	397	Bacterial glucoamylase, C-terminal domain {Thermoa	95.56
d1fp3a_	402	N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa)	95.19
d1lf6a1	397	Bacterial glucoamylase, C-terminal domain {Thermoa	95.18
d1ulva1	413	Glucodextranase, domain A {Arthrobacter globiformi	93.86
d1nc5a_	363	Hypothetical protein YteR {Bacillus subtilis [TaxI	91.7
d1nc5a_	363	Hypothetical protein YteR {Bacillus subtilis [TaxI	90.77
d1gaia_	472	Glucoamylase {Aspergillus awamori, variant x100 [T	87.52
d2d5ja1	377	Unsaturated glucuronyl hydrolase {Bacillus sp. GL1	87.41
d2afaa1	411	Putative NAG isomerase YihS {Salmonella typhimuriu	84.24
d1fp3a_	402	N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa)	83.0

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-44  Score=315.74  Aligned_cols=208  Identities=38%  Similarity=0.808  Sum_probs=189.9

Q ss_pred             CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222            1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW   80 (212)
Q Consensus         1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~   80 (212)
                      +||+.++|||.|+..++.+||+||||.+|+||+++.+..+. .+..+.+++|.++++||+++||+||||+.|+.++...+
T Consensus       149 ~~~~~~~GGW~f~~~n~~~Pd~DdTA~~l~al~~~~~~~~~-~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~  227 (448)
T d1w6ka1         149 YYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPH-VTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHL  227 (448)
T ss_dssp             GTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTT-CCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGG
T ss_pred             hcCCCCCCceeCCcCCCCCCCCccHHHHHHHHHHHhccCcc-ccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhh
Confidence            58999999999999999999999999999999987654332 34567789999999999999999999999999999999


Q ss_pred             hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222           81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW  160 (212)
Q Consensus        81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~  160 (212)
                      ++.+++.+.|++.++|++++++|+++|.+|..++...++.+..+++++|+|+++||++.|++||+|++.|+.+++|+|++
T Consensus       228 l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~~~~~~~i~ral~yL~~~Q~~DGsW~g~wg~~~~ygT~~  307 (448)
T d1w6ka1         228 LELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWF  307 (448)
T ss_dssp             GGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHH
T ss_pred             hhcccchhhhhccccCCCcchHHHHHHHHHHHHhhhCCccccccchHHHHHHHHHHHccCCCCCcccccCCCcccHHHHH
Confidence            99999999999999999999999999999999998888888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcCCC---ChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222          161 AISGLVAAEKTYS---NCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       161 al~aL~~~g~~~~---~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~  209 (212)
                      ++.||.++|....   ..+.|+||++||+++|++||||++.+.++.+..|+.
T Consensus       308 al~aL~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~~~s~~~~~~~~  359 (448)
T d1w6ka1         308 GLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQ  359 (448)
T ss_dssp             HHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCB
T ss_pred             HHHHHHHhCcCcccccccHHHHHHHHHHHhccCCCCCccCCCccccCcccCC
Confidence            9999999997642   358999999999999999999999888877776654

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=100.00  E-value=1e-37  Score=268.30  Aligned_cols=194  Identities=23%  Similarity=0.364  Sum_probs=169.0

Q ss_pred             CCCCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhh
Q 028222            1 MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSW   80 (212)
Q Consensus         1 ~~~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~   80 (212)
                      +||+.++|||+|++.++.+|++|+|+.+|.+|..+.. +    +..+..++|+++++||+++||+||||+.|+..++..+
T Consensus        76 ~~~~~~~Ggw~~s~~~~~~p~~d~Ta~~l~aL~~~~~-~----~~~~~~~ai~~av~~Lls~Qn~dGGw~~~~~~~~~~~  150 (352)
T d2sqca1          76 KRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRL-P----DERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDL  150 (352)
T ss_dssp             TCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCC-S----CHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSG
T ss_pred             hcCCCCCCccccccCCCCCCccccHHHHHHhhhhhcC-C----chhhHHHHHHHHHHHHHHhhcCCCCcccccccCccch
Confidence            4788999999999999999999999999999987632 2    2234578899999999999999999999998888888


Q ss_pred             hhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHH
Q 028222           81 IELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWW  160 (212)
Q Consensus        81 ~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~  160 (212)
                      ++.+|+.+ ++. .++++.+++|+.+|.+|..++.       ++++++|+||++||++.|++||+|++.|+.+++|+|++
T Consensus       151 ~~~~~~~~-~~~-~~d~~~~~~T~~~l~al~~~g~-------~~~~~~I~kav~~L~~~Q~~dG~w~~~~~~~~~y~t~~  221 (352)
T d2sqca1         151 PNHIPFSD-FGE-VTDPPSEDVTAHVLECFGSFGY-------DDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGA  221 (352)
T ss_dssp             GGGSTTCS-SSC-SSCCCBHHHHHHHHHHHHTTTC-------CTTSHHHHHHHHHHHHHCCTTSCCCCSSBSSHHHHHHH
T ss_pred             hhccchhh-hhh-ccCCCchHHHHHHHHHHHhcCC-------chhhHHHHHHHHHHHhccCCCCCccccCCCCcchHHHH
Confidence            88887665 433 5688899999999999887642       23457999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222          161 AISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       161 al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~  209 (212)
                      ++.+|..+|... ..+.++||++||+++|++||||+..+.++++..|+.
T Consensus       222 ~l~aL~~~g~~~-~~~~v~ka~~~L~~~Q~~dGgWg~~~~~~~~~~~~~  269 (352)
T d2sqca1         222 VVSALKAVGIDT-REPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAG  269 (352)
T ss_dssp             HHHHHHHTTCCT-TSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTT
T ss_pred             HHHHHHhccccc-chHHHHHHHHHHHhccCCCCCcccCcccccCcccCC
Confidence            999999999875 689999999999999999999999999988888764

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-25  Score=198.10  Aligned_cols=171  Identities=20%  Similarity=0.285  Sum_probs=129.2

Q ss_pred             CCCCCCccc-cccCC------------------CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc
Q 028222            3 RHISKGGWT-FSDKD------------------HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ   63 (212)
Q Consensus         3 ~~~~~Ggw~-~~~~~------------------~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q   63 (212)
                      -|++.|||+ |+...                  ...+.+|+|+++|.+|..+....+.. .....++.|+++++||++.|
T Consensus       209 mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~-r~~~~~~~i~ral~yL~~~Q  287 (448)
T d1w6ka1         209 MRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEH-RAAEIRETLTQGLEFCRRQQ  287 (448)
T ss_dssp             TCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTS-SHHHHHHHHHHHHHHHHHHS
T ss_pred             hcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHHHHHHHHHHHhhhCCcc-ccccchHHHHHHHHHHHccC
Confidence            389999998 64321                  22356899999999999987644321 11234678999999999999


Q ss_pred             cCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC
Q 028222           64 SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD  143 (212)
Q Consensus        64 ~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d  143 (212)
                      ++||||....+.                      .++..|+.+|.+|..++....   .....+.++||++||++.|++|
T Consensus       288 ~~DGsW~g~wg~----------------------~~~ygT~~al~aL~~~G~~~~---~~~~~~~v~ka~~wLls~Q~~D  342 (448)
T d1w6ka1         288 RADGSWEGSWGV----------------------CFTYGTWFGLEAFACMGQTYR---DGTACAEVSRACDFLLSRQMAD  342 (448)
T ss_dssp             CTTSCCCCSSBS----------------------SHHHHHHHHHHHHHHTTCCCB---TTBCCHHHHHHHHHHHTTCCTT
T ss_pred             CCCCcccccCCC----------------------cccHHHHHHHHHHHHhCcCcc---cccccHHHHHHHHHHHhccCCC
Confidence            999999743221                      123359999999998864321   1122468999999999999999


Q ss_pred             CCcCCCC-----------ccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCc
Q 028222          144 GSWYGTW-----------GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLS  201 (212)
Q Consensus       144 G~w~g~~-----------~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s  201 (212)
                      |||....           +.+....|++||+||.++|..  ..++++||++||+++|++||+|.+...+
T Consensus       343 GGWge~~~s~~~~~~~~~~~s~~~~TAwAl~aL~~ag~~--~~~~v~rgv~~L~~~Q~~~G~W~~~~~~  409 (448)
T d1w6ka1         343 GGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIA  409 (448)
T ss_dssp             SCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCC
T ss_pred             CCccCCCccccCcccCCCCCCcHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHccCCCCCCCCCcee
Confidence            9995321           234567899999999999965  5899999999999999999999865543

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.92  E-value=3.7e-25  Score=189.52  Aligned_cols=160  Identities=23%  Similarity=0.414  Sum_probs=122.0

Q ss_pred             CCCCCCccc-cccCCC----------------CCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccC
Q 028222            3 RHISKGGWT-FSDKDH----------------GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSK   65 (212)
Q Consensus         3 ~~~~~Ggw~-~~~~~~----------------~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~   65 (212)
                      .|++.|||+ |.....                ..+.+++|+.+|.+|...+.        +..++.|+++++||++.|++
T Consensus       132 ~Qn~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~T~~~l~al~~~g~--------~~~~~~I~kav~~L~~~Q~~  203 (352)
T d2sqca1         132 MQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGY--------DDAWKVIRRAVEYLKREQKP  203 (352)
T ss_dssp             TCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTC--------CTTSHHHHHHHHHHHHHCCT
T ss_pred             hhcCCCCcccccccCccchhhccchhhhhhccCCCchHHHHHHHHHHHhcCC--------chhhHHHHHHHHHHHhccCC
Confidence            589999998 543211                13567889999998877643        34578999999999999999


Q ss_pred             CCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCC
Q 028222           66 TGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGS  145 (212)
Q Consensus        66 dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~  145 (212)
                      ||+|..-...                      ++...|+.++.+|...+..  ..     ++.++||++||++.|++||+
T Consensus       204 dG~w~~~~~~----------------------~~~y~t~~~l~aL~~~g~~--~~-----~~~v~ka~~~L~~~Q~~dGg  254 (352)
T d2sqca1         204 DGSWFGRWGV----------------------NYLYGTGAVVSALKAVGID--TR-----EPYIQKALDWVEQHQNPDGG  254 (352)
T ss_dssp             TSCCCCSSBS----------------------SHHHHHHHHHHHHHHTTCC--TT-----SHHHHHHHHHHHHTCCTTSC
T ss_pred             CCCccccCCC----------------------CcchHHHHHHHHHHhcccc--cc-----hHHHHHHHHHHHhccCCCCC
Confidence            9999632111                      1233588899999877532  11     36899999999999999999


Q ss_pred             cCCCC-----------ccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCc
Q 028222          146 WYGTW-----------GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLS  201 (212)
Q Consensus       146 w~g~~-----------~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s  201 (212)
                      |+...           +.+....|+++++||..++..  ..++++||++||+++|++||+|.+...+
T Consensus       255 Wg~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~a~~~--~~~~i~ra~~~L~~~Q~~dG~w~~~~~~  319 (352)
T d2sqca1         255 WGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRA--ESEAARRGVQYLVETQRPDGGWDEPYYT  319 (352)
T ss_dssp             CCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCS--SSHHHHHHHHHHHHHCCTTSCCCCCSCC
T ss_pred             cccCcccccCcccCCCCCCcHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHhcCCCCCCCCccee
Confidence            95321           122356799999999999876  4689999999999999999999865444

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=99.83  E-value=8.3e-21  Score=158.52  Aligned_cols=179  Identities=15%  Similarity=0.192  Sum_probs=121.7

Q ss_pred             CCCCCCccc--cccCCCCCC---------CCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceee
Q 028222            3 RHISKGGWT--FSDKDHGLP---------VSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITG   71 (212)
Q Consensus         3 ~~~~~Ggw~--~~~~~~~~~---------~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~   71 (212)
                      .|.+.|||.  |+-.....+         |.+.|+.+|+.|+.+...    .+.++..+++.++++||+++|++||||+.
T Consensus        35 ~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~----~~d~~~~~A~~Rgi~~LL~~Q~~nGGWpq  110 (324)
T d1gxma_          35 YQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKS----GGNTKYRDAVRKAANFLVNSQYSTGALPQ  110 (324)
T ss_dssp             TCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHCCTTSCCBS
T ss_pred             cCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHhhccCCCCccc
Confidence            378999998  432222222         555677778888775432    13456789999999999999999999999


Q ss_pred             cCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhh--------CCccchhHHHHHHHHHHHHHHhccccC
Q 028222           72 WEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKL--------YPKHKKNEVNNFITNGVKFTEDSQKLD  143 (212)
Q Consensus        72 ~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~--------~~~~~~~~i~~~i~ra~~~L~~~Q~~d  143 (212)
                      |.+.+... +..+|    |++        +.+..++..|......        .+..++.++..+++||++||++.|.++
T Consensus       111 f~P~~~~y-~~~It----FND--------~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~~  177 (324)
T d1gxma_         111 FYPLKGGY-SDHAT----FND--------NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQ  177 (324)
T ss_dssp             EESCCSGG-GGSEE----CGG--------GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEE
T ss_pred             cccCCCCc-ccccC----CCc--------HHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHHHHhhccc
Confidence            97766543 34555    543        1233444444332211        122344567899999999999999999


Q ss_pred             CCcCCCCccchhh-------------------HHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccc
Q 028222          144 GSWYGTWGVCFIY-------------------STWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       144 G~w~g~~~~~~~~-------------------~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~  198 (212)
                      |||.+.|+..+.+                   .|+.++..|......+....+|+.|+.||.+++...++|...
T Consensus       178 gg~~t~Wg~Qhd~~tl~Pa~AR~yE~~sls~~ES~~iv~~LM~~~~s~~i~~ai~~avaWl~~~k~~~~~~~~~  251 (324)
T d1gxma_         178 NGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTYLEGYTYD  251 (324)
T ss_dssp             TTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTSEEEEEEC
T ss_pred             CCCCChhhhccCcccccccccccccChhhhhhhHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhchhcccceeec
Confidence            9999999755432                   367777777764432222347899999999999888887543

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=99.81  E-value=8.5e-20  Score=157.04  Aligned_cols=166  Identities=11%  Similarity=0.075  Sum_probs=114.7

Q ss_pred             CCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccC
Q 028222           19 LPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHD   98 (212)
Q Consensus        19 ~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~   98 (212)
                      ..|.+.|...|..|+.+...-+. ...+.+.+++.++++||+.+|++||||+.|.+.+. .++..+|    |++      
T Consensus       145 TiDN~aTt~el~~La~~~~~~~~-~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~-~Y~~~It----fND------  212 (408)
T d1r76a_         145 TIDNDATVTEIRFLAQVVSQLAP-EEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEG-GYHDAIT----YND------  212 (408)
T ss_dssp             BCGGGTTHHHHHHHHHHHHHSCG-GGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCC-GGGGSEE----CGG------
T ss_pred             CcCcchHHHHHHHHHHHHHHcCc-ccchhHHHHHHHHHHHHHHhhCCCCCccccCCCCc-ccccccc----cCc------
Confidence            46778899999999986432110 01234678999999999999999999998875443 3344454    543      


Q ss_pred             ccchHHHHHHHHHHHHhhCCc------cchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhh----------------
Q 028222           99 YVECTASALKAMTLFQKLYPK------HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIY----------------  156 (212)
Q Consensus        99 ~~~~Ta~al~aL~~~~~~~~~------~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~----------------  156 (212)
                        +.+..++..|.........      .++.++..+++||++||++.|.++|||.+.|+..+.+                
T Consensus       213 --~~m~~~l~~l~~~~~~~~~~~~~~~~~r~r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sl  290 (408)
T d1r76a_         213 --DALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAAL  290 (408)
T ss_dssp             --GHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCE
T ss_pred             --hHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHhcccCCCcChHhhccCccccCcccccccCChhh
Confidence              2456677777665443221      2335678999999999999999999999999754422                


Q ss_pred             ---HHHHHHHHHHHcCcCC-CChHHHHHHHHHHHhcccCCCccccc
Q 028222          157 ---STWWAISGLVAAEKTY-SNCLAIRKATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       157 ---~T~~al~aL~~~g~~~-~~~~~i~~a~~~Ll~~Q~~dGgw~~~  198 (212)
                         .|+.++..|..+-.+. ....+|++|++||.++|.+||.|...
T Consensus       291 s~~eS~~i~~~LM~~~~ps~~~~~aI~~av~Wl~~~~~~~~~~~~~  336 (408)
T d1r76a_         291 SSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWVKS  336 (408)
T ss_dssp             EHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC------
T ss_pred             hhhhHHHHHHHHHhCCCCChhHHHHHHHHHHHHHhcccCCceeeec
Confidence               4677777777765432 12457999999999999999999653

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.4e-18  Score=146.70  Aligned_cols=142  Identities=21%  Similarity=0.262  Sum_probs=107.0

Q ss_pred             HHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHH
Q 028222           27 ESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASA  106 (212)
Q Consensus        27 ~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~a  106 (212)
                      -+|.+|..+.+.         .+...++.++||.++|++||||+....                     +.+++..|..+
T Consensus        46 w~l~sL~lLg~l---------~~~~~~~~i~~L~s~Q~~dGGf~g~~~---------------------~~~~l~~T~~a   95 (325)
T d3dssb1          46 WGLTVMDLMGQL---------HRMNKEEILVFIKSCQHECGGVSASIG---------------------HDPHLLYTLSA   95 (325)
T ss_dssp             HHHHHHHHTTCG---------GGSCHHHHHHHHHHTBCTTSCBBSSTT---------------------SCBCHHHHHHH
T ss_pred             HHHHHHHHhCCC---------chHHHHHHHHHHHHhcCCCCCcCCCCC---------------------CcccHHHHHHH
Confidence            355666666432         223357889999999999999985432                     12455678889


Q ss_pred             HHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCC-CCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHH
Q 028222          107 LKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYG-TWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFL  185 (212)
Q Consensus       107 l~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g-~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L  185 (212)
                      +.+|...+....        ...++.++||++.|++||+|.+ .++...++.|.+|+.+|..++..  ..+.++++++||
T Consensus        96 l~~L~l~~~~~~--------~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~r~ty~Al~~l~ll~~~--~~~~~~~~~~~i  165 (325)
T d3dssb1          96 VQILTLYDSIHV--------INVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKL--DAINVEKAIEFV  165 (325)
T ss_dssp             HHHHHHTTCGGG--------SCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCG--GGSCHHHHHHHH
T ss_pred             HHHHHhhccccc--------cCHHHHHHHHHHhhCcCCCCccCCCCCccHHHHHHHHHHHHHcCCC--chhhHHHHHHHH
Confidence            999887643211        1257889999999999999976 56677888999999999988865  356789999999


Q ss_pred             HhcccCCCccccccCcCCCCccc
Q 028222          186 LNIQCDDGGWGESYLSCPNKLHM  208 (212)
Q Consensus       186 l~~Q~~dGgw~~~~~s~~~~~y~  208 (212)
                      ++||+.||||+..+..-+..-||
T Consensus       166 ~scQn~DGGfg~~p~~Esh~g~T  188 (325)
T d3dssb1         166 LSCMNFDGGFGCRPGSESHAGQI  188 (325)
T ss_dssp             HTTBCTTSCBCSSTTCCCCHHHH
T ss_pred             HHhcCCcCCccccCCCCCCcchh
Confidence            99999999999888765544443

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.2e-17  Score=143.92  Aligned_cols=135  Identities=16%  Similarity=0.072  Sum_probs=105.1

Q ss_pred             CCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHH
Q 028222           46 KMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEV  125 (212)
Q Consensus        46 ~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i  125 (212)
                      ++.++..++.++||.++|++||||+..+.                     +.+++..|..+|.+|..++.... ..  .+
T Consensus        97 ~~~~~~~~~ii~~l~~~q~~~GGF~g~pg---------------------~~~hla~Ty~Al~~L~ilg~~~~-~~--~i  152 (401)
T d2h6fb1          97 PIPQIVATDVCQFLELCQSPEGGFGGGPG---------------------QYPHLAPTYAAVNALCIIGTEEA-YD--II  152 (401)
T ss_dssp             CCCHHHHHHHHHHHHHHBCTTSSBBSSTT---------------------CCBCHHHHHHHHHHHHHHCCHHH-HT--TS
T ss_pred             CccHHHHHHHHHHHHHHcCCCCCcCCCCC---------------------CCcchHHHHHHHHHHHHcCCccc-cc--hh
Confidence            45678889999999999999999986432                     23466679999999998864210 00  01


Q ss_pred             HHHHHHHHHHHHhccccCCCcCCC-CccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCC
Q 028222          126 NNFITNGVKFTEDSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPN  204 (212)
Q Consensus       126 ~~~i~ra~~~L~~~Q~~dG~w~g~-~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~  204 (212)
                        -.++.++||++.|++||+|... ++...+..|.+|+..+..++..  ..+.+++.++||++||+.||||+..+..-+-
T Consensus       153 --dR~~i~~fL~slQ~pDGsF~~~~~ge~D~R~~Y~Av~i~~lL~~~--~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaH  228 (401)
T d2h6fb1         153 --NREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII--TPDLFEGTAEWIARCQNWEGGIGGVPGMEAH  228 (401)
T ss_dssp             --CHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCC--CTTTTTTHHHHHHHHBCTTSSBCSSTTSCCC
T ss_pred             --hHHHHHHHHHHhcCCCCCccccccCCcccchhHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCCCCCccCCCCCCcc
Confidence              1356689999999999999654 5667889999999999999876  3567899999999999999999988876555


Q ss_pred             Cccc
Q 028222          205 KLHM  208 (212)
Q Consensus       205 ~~y~  208 (212)
                      .-||
T Consensus       229 gg~T  232 (401)
T d2h6fb1         229 GGYT  232 (401)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            4444

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=1.6e-16  Score=133.85  Aligned_cols=165  Identities=12%  Similarity=0.030  Sum_probs=119.8

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      .|++.|||+...  ...|..-.|-.++.+|......         .....+++++||+++|++||||......       
T Consensus        72 ~Q~~dGGf~g~~--~~~~~l~~T~~al~~L~l~~~~---------~~~dr~~i~~~L~s~Q~~DGsf~~~~~~-------  133 (325)
T d3dssb1          72 CQHECGGVSASI--GHDPHLLYTLSAVQILTLYDSI---------HVINVDKVVAYVQSLQKEDGSFAGDIWG-------  133 (325)
T ss_dssp             TBCTTSCBBSST--TSCBCHHHHHHHHHHHHHTTCG---------GGSCHHHHHHHHHHTBCTTSCBBSSTTC-------
T ss_pred             hcCCCCCcCCCC--CCcccHHHHHHHHHHHHhhccc---------cccCHHHHHHHHHHhhCcCCCCccCCCC-------
Confidence            478999999643  3356777888888888766431         1223588999999999999999742211       


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCC-ccchhhHHHHH
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWA  161 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~-~~~~~~~T~~a  161 (212)
                                    ..++..|..++.+|..++...+        ..++++++||++.|+.||||...- ...+.-.|.+|
T Consensus       134 --------------e~D~r~ty~Al~~l~ll~~~~~--------~~~~~~~~~i~scQn~DGGfg~~p~~Esh~g~T~ca  191 (325)
T d3dssb1         134 --------------EIDTRFSFCAVATLALLGKLDA--------INVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC  191 (325)
T ss_dssp             --------------CBCHHHHHHHHHHHHHHTCGGG--------SCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHH
T ss_pred             --------------CccHHHHHHHHHHHHHcCCCch--------hhHHHHHHHHHHhcCCcCCccccCCCCCCcchhHHH
Confidence                          1233347777777777653211        247899999999999999996432 23345568889


Q ss_pred             HHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcCCCCcccc
Q 028222          162 ISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       162 l~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~~~~~y~~  209 (212)
                      +.+|.-++...  ....++.++||.++|.++|||..++.--.+.+|+.
T Consensus       192 vasL~ll~~l~--~~~~~~l~~wL~~rQ~~~GGf~GR~~K~~D~cys~  237 (325)
T d3dssb1         192 TGFLAITSQLH--QVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSW  237 (325)
T ss_dssp             HHHHHHTTCGG--GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHH
T ss_pred             HHHHHHhcccc--cccHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHH
Confidence            88888887653  33578889999999999999998888778887764

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.66  E-value=7e-16  Score=126.86  Aligned_cols=85  Identities=13%  Similarity=0.193  Sum_probs=64.3

Q ss_pred             CCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCc
Q 028222           20 PVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDY   99 (212)
Q Consensus        20 ~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~   99 (212)
                      +++..||+.++++..++.         ..++.++++++||+++||+||||+.+..                     ++++
T Consensus         2 ~~~~~~a~~i~~~~~~g~---------~~~~~~~~~~~~l~~~Q~~dGgW~~~~~---------------------~~~~   51 (271)
T d2sqca2           2 SNVTMEAEYVLLCHILDR---------VDRDRMEKIRRYLLHEQREDGTWALYPG---------------------GPPD   51 (271)
T ss_dssp             CCTHHHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHSCTTSCCCSSTT---------------------CCCC
T ss_pred             CcccccHHHHHHHHHhCC---------CCHHHHHHHHHHHHHccCCCCCccCCCC---------------------CCCc
Confidence            456678999988888753         4578899999999999999999984321                     2456


Q ss_pred             cchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccc
Q 028222          100 VECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQK  141 (212)
Q Consensus       100 ~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~  141 (212)
                      +..|+.++.||...+.. ++      .++++||.+||++++-
T Consensus        52 ~~~T~~~~~AL~~~g~~-~~------~~~~~ra~~~i~~~GG   86 (271)
T d2sqca2          52 LDTTIEAYVALKYIGMS-RD------EEPMQKALRFIQSQGG   86 (271)
T ss_dssp             HHHHHHHHHHHHHHTCC-TT------SHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhCCC-Cc------hHHHHHHHHHHHHcCC
Confidence            77899999999877632 21      2578888888887743

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.65  E-value=1.4e-15  Score=125.08  Aligned_cols=175  Identities=19%  Similarity=0.171  Sum_probs=106.1

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCc------eeecCCCC
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGG------ITGWEPAG   76 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGg------w~~~~~~~   76 (212)
                      +|+++|||++..  ...+++++|+.++.||..++.        +..+.++.|+.+||++++-..+.      |-...+..
T Consensus        35 ~Q~~dGgW~~~~--~~~~~~~~T~~~~~AL~~~g~--------~~~~~~~~ra~~~i~~~GG~~~~~~~~k~~LA~~G~~  104 (271)
T d2sqca2          35 EQREDGTWALYP--GGPPDLDTTIEAYVALKYIGM--------SRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEY  104 (271)
T ss_dssp             HSCTTSCCCSST--TCCCCHHHHHHHHHHHHHHTC--------CTTSHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTSS
T ss_pred             ccCCCCCccCCC--CCCCcHHHHHHHHHHHHHhCC--------CCchHHHHHHHHHHHHcCCcccCchHHHHHHHhcCCC
Confidence            689999999754  347899999999999988743        34568899999999999544332      10000000


Q ss_pred             ChhhhhhcCcccccc--hhhcccCccchHHHHHH----------------------------------------------
Q 028222           77 APSWIELLNPIEFLD--EVIIEHDYVECTASALK----------------------------------------------  108 (212)
Q Consensus        77 ~~~~~~~l~~~e~~~--~~~~d~~~~~~Ta~al~----------------------------------------------  108 (212)
                      .-..+..+|+.-.+-  ...+++....+++.++.                                              
T Consensus       105 ~w~~v~~iP~E~~llP~~~p~~p~~~~~~~R~v~~p~~~l~~~~~~~~~~~~~~l~eL~~~~~~~~~~~~~~~~~~~~~~  184 (271)
T d2sqca2         105 PWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGAKGGGGWIFDA  184 (271)
T ss_dssp             CGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGGGCCGGGGCCSSCCCCCCCTTCCCHHHHH
T ss_pred             CccccCCCCHHHHcCCCccccCchhhheehhhhhhhHHHhhccCccCCCchhhHHHHHhcCCCccccccccccccHHHHH
Confidence            000001111111000  01111212222222111                                              


Q ss_pred             ---HHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHH
Q 028222          109 ---AMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFL  185 (212)
Q Consensus       109 ---aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L  185 (212)
                         .|..+....+..-   -..+++|+++||+++|++||+|++.     .-.|.+++.||..+|.+  +++.++|++++|
T Consensus       185 ~~~~l~~~e~l~~~~l---r~~a~~~a~~wl~~~q~~dGgwG~i-----~p~~~~~l~aL~~~G~~--~~p~v~r~l~~l  254 (271)
T d2sqca2         185 LDRALHGYQKLSVHPF---RRAAEIRALDWLLERQAGDGSWGGI-----QPPWFYALIALKILDMT--QHPAFIKGWEGL  254 (271)
T ss_dssp             HHHHHHHHHHSSCCTT---HHHHHHHHHHHHHHHCCTTSSSTTS-----HHHHHHHHHHHHHTTCT--TSHHHHHHHHGG
T ss_pred             HHHHHHHHHhcCCCch---hhHHHHHHHHHHHHHccCCCCcccc-----CHHHHHHHHHHHhcCCC--CCHHHHHHHHHH
Confidence               1111111111110   1468999999999999999999532     22467899999999975  579999999999


Q ss_pred             Hh--cccCCCcccc
Q 028222          186 LN--IQCDDGGWGE  197 (212)
Q Consensus       186 l~--~Q~~dGgw~~  197 (212)
                      .+  .|.+||+|.-
T Consensus       255 ~~~~~~~~dG~~~i  268 (271)
T d2sqca2         255 ELYGVELDYGGWMF  268 (271)
T ss_dssp             GGGEEECTTSCEEE
T ss_pred             HHheeEcCCCceec
Confidence            76  5789999963

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5e-15  Score=127.34  Aligned_cols=167  Identities=12%  Similarity=0.122  Sum_probs=121.4

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      .|++.|||+-..  ...|....|-.+|.+|..++..+.    ....  ..++.++||.++|++||||......       
T Consensus       113 ~q~~~GGF~g~p--g~~~hla~Ty~Al~~L~ilg~~~~----~~~i--dR~~i~~fL~slQ~pDGsF~~~~~g-------  177 (401)
T d2h6fb1         113 CQSPEGGFGGGP--GQYPHLAPTYAAVNALCIIGTEEA----YDII--NREKLLQYLYSLKQPDGSFLMHVGG-------  177 (401)
T ss_dssp             HBCTTSSBBSST--TCCBCHHHHHHHHHHHHHHCCHHH----HTTS--CHHHHHHHHHTTBCTTSCBBSSTTC-------
T ss_pred             HcCCCCCcCCCC--CCCcchHHHHHHHHHHHHcCCccc----cchh--hHHHHHHHHHHhcCCCCCccccccC-------
Confidence            478999999653  346777789999999988754210    0011  1367789999999999999743211       


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCc-cchhhHHHHH
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG-VCFIYSTWWA  161 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~-~~~~~~T~~a  161 (212)
                                    ..++..|+.|+..+..++...+        ..++++++||++.|+.||||.+..+ ..+.-.|.+|
T Consensus       178 --------------e~D~R~~Y~Av~i~~lL~~~~~--------~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCa  235 (401)
T d2h6fb1         178 --------------EVDVRSAYCAASVASLTNIITP--------DLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCG  235 (401)
T ss_dssp             --------------CBSHHHHHHHHHHHHHTTCCCT--------TTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHH
T ss_pred             --------------CcccchhHHHHHHHHHhCCCCH--------HHHHHHHHHHHHccCCCCCccCCCCCCcchhHHHHH
Confidence                          1234457777777776654322        2467889999999999999976543 2445568899


Q ss_pred             HHHHHHcCcCCCChHHHHHHHHHHHhcccC-CCccccccCcCCCCccc
Q 028222          162 ISGLVAAEKTYSNCLAIRKATDFLLNIQCD-DGGWGESYLSCPNKLHM  208 (212)
Q Consensus       162 l~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~-dGgw~~~~~s~~~~~y~  208 (212)
                      +.+|..+|...  ...+++.++||.++|.+ +|||...+.--.+.+|.
T Consensus       236 lAaL~lL~~~~--~~d~~~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYS  281 (401)
T d2h6fb1         236 LAALVILKRER--SLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYS  281 (401)
T ss_dssp             HHHHHHHTCGG--GSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHH
T ss_pred             HHHHHHhCCCc--ccCHHHHHHHHHHcCCCCCCccCCCCCCCcchHHH
Confidence            99999988763  34589999999999976 89998888777777774

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=99.50  E-value=6.3e-14  Score=120.13  Aligned_cols=146  Identities=13%  Similarity=0.104  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHhcccCCCceeecCCCC----C-h-----hhhh-hcCcccccchh----hc--ccCccchHHHHHHHHHH
Q 028222           50 ERFYDAANFMLYIQSKTGGITGWEPAG----A-P-----SWIE-LLNPIEFLDEV----II--EHDYVECTASALKAMTL  112 (212)
Q Consensus        50 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~----~-~-----~~~~-~l~~~e~~~~~----~~--d~~~~~~Ta~al~aL~~  112 (212)
                      +...+.++.|+..|+++|||+-...-.    . .     .... ..+....+...    ..  ..-+.+.|...|.+|+.
T Consensus        81 ~eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~  160 (408)
T d1r76a_          81 KAARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQ  160 (408)
T ss_dssp             HHHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCCCccccccccccchhhhhhhccccccccchhhhhhhhhhcccCCCcCcchHHHHHHHHHH
Confidence            456789999999999999997211000    0 0     0000 00000000000    00  01123468899999998


Q ss_pred             HHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccchh---------hHHHHHHHHHHHcC--cCC---------
Q 028222          113 FQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFI---------YSTWWAISGLVAAE--KTY---------  172 (212)
Q Consensus       113 ~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~~~---------~~T~~al~aL~~~g--~~~---------  172 (212)
                      +....+..+..++.+++.||++||++.|++||||+..|.....         ..+..++..|..+.  ...         
T Consensus       161 ~~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r  240 (408)
T d1r76a_         161 VVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIR  240 (408)
T ss_dssp             HHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHH
T ss_pred             HHHHcCcccchhHHHHHHHHHHHHHHhhCCCCCccccCCCCcccccccccCchHHHHHHHHHHHHHHhccccccCCHHHH
Confidence            8765454455678899999999999999999999865532211         13444555554432  110         


Q ss_pred             -CChHHHHHHHHHHHhcccCCCcc
Q 028222          173 -SNCLAIRKATDFLLNIQCDDGGW  195 (212)
Q Consensus       173 -~~~~~i~~a~~~Ll~~Q~~dGgw  195 (212)
                       +...+++||++||+++|..+|||
T Consensus       241 ~r~~~a~~rgi~~ll~~Q~~~gg~  264 (408)
T d1r76a_         241 TRALEATNAAIHCIVETQVVQDGK  264 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHSCEETTE
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCC
Confidence             12578999999999999999985

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.2e-13  Score=116.42  Aligned_cols=168  Identities=14%  Similarity=0.117  Sum_probs=112.2

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      .|.++|||.-. ....-.|+--|-.++..+..+..         .++..++++++||+++||-||||+..+.        
T Consensus       137 lq~~DGsF~~~-~~gge~D~R~tY~A~~i~~lL~~---------~~~~~~~~~~~~I~scq~~DGGfg~~p~--------  198 (346)
T d1n4qb_         137 LQLEDGSFCAV-PEGSENDMRFVYCASCICYMLNN---------WSGMDMKKAISYIRRSMSYDNGLAQGAG--------  198 (346)
T ss_dssp             HBCTTSCBCSS-TTCCCCBHHHHHHHHHHHHHTTC---------GGGSCHHHHHHHHHHTBCTTSSBBSSTT--------
T ss_pred             hcCCCCCcccc-CCCCcchHHHHHHHHHHHHHhCC---------CccccHHHHHHHHHHhcCcCCCccCCCC--------
Confidence            37889998421 22334455555555544444422         2334589999999999999999985322        


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcCCCCccc-hhhHHHHH
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVC-FIYSTWWA  161 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~g~~~~~-~~~~T~~a  161 (212)
                          .         .++...|..+|.+|..++.......    ...+++.++||..+|  +|||.|+.... .+=.+.++
T Consensus       199 ----~---------EsHgg~TfCavasL~ll~~~~~~~~----~~~~~~l~~WL~~Rq--~gGf~GR~nK~~D~CYs~W~  259 (346)
T d1n4qb_         199 ----L---------ESHGGSTFCGIASLCLMGKLEEVFS----EKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWV  259 (346)
T ss_dssp             ----S---------CBCHHHHHHHHHHHHHHTCHHHHSC----HHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHH
T ss_pred             ----C---------CccHHHHHHHHHHHHHhcccccccc----hhhHHHHHHHHHhcc--cCCcCCCCCCccchHHHHHH
Confidence                1         2344569999999999875421111    235788999999887  79998875321 11126677


Q ss_pred             HHHHHHcCcCCCChHHHHHHHHHHHhccc-CCCccccccCcCCCCcccc
Q 028222          162 ISGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESYLSCPNKLHMN  209 (212)
Q Consensus       162 l~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~-~dGgw~~~~~s~~~~~y~~  209 (212)
                      ..+|.-++...  .-..++..+||+++|+ ++|||+..+...++..+|+
T Consensus       260 ~~~l~iL~~~~--~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~~HT~  306 (346)
T d1n4qb_         260 GATLKLLKIFQ--YTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAY  306 (346)
T ss_dssp             HHHHHHTTCGG--GSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHH
T ss_pred             HHHHHHccccc--ccCHHHHHHHHHHHcCCCCCCcCCCCCCCCcHHHHH
Confidence            77777777542  2346777899999976 6899999998888776654

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=5.8e-13  Score=112.26  Aligned_cols=146  Identities=11%  Similarity=-0.010  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhcccCCCceee------cCCCCChhhhhhcCcc-cccchhhcccCccchHHHHHHHHHHHHhhCCccchhH
Q 028222           52 FYDAANFMLYIQSKTGGITG------WEPAGAPSWIELLNPI-EFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNE  124 (212)
Q Consensus        52 i~~av~~Ll~~Q~~dGgw~~------~~~~~~~~~~~~l~~~-e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~  124 (212)
                      -++.++||.++|+.+++...      |.+....  .....+. ..++....+.+++..|..+|.+|..++...+.     
T Consensus        52 ~~~~i~~l~~~q~~~~~~~~~~~~~gf~gs~~~--~~~~~~~~~~~~~~~~~~~hl~~Ty~Al~~L~~lg~~~~~-----  124 (346)
T d1n4qb_          52 KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYL--GIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSR-----  124 (346)
T ss_dssp             HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTT--CCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTT-----
T ss_pred             HHHHHHHHHHHhccccccccCccccCccCcccc--cCCCCcccCCCCCCccchhHHHHHHHHHHHHHHhchHhhH-----
Confidence            57889999999976543321      1000000  0000000 01233344677888999999999988642211     


Q ss_pred             HHHHHHHHHHHHHhccccCCCcCC-C-CccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccccCcC
Q 028222          125 VNNFITNGVKFTEDSQKLDGSWYG-T-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSC  202 (212)
Q Consensus       125 i~~~i~ra~~~L~~~Q~~dG~w~g-~-~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~~~s~  202 (212)
                      +  -.++.++||.+.|++||+|.+ . ++...+..|.+|+..+..++..  ....++++++||++||+.||||+..+..-
T Consensus       125 i--dr~~i~~~l~~lq~~DGsF~~~~~gge~D~R~tY~A~~i~~lL~~~--~~~~~~~~~~~I~scq~~DGGfg~~p~~E  200 (346)
T d1n4qb_         125 V--DKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNW--SGMDMKKAISYIRRSMSYDNGLAQGAGLE  200 (346)
T ss_dssp             S--CHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCG--GGSCHHHHHHHHHHTBCTTSSBBSSTTSC
T ss_pred             h--HHHHHHHHHHHhcCCCCCccccCCCCcchHHHHHHHHHHHHHhCCC--ccccHHHHHHHHHHhcCcCCCccCCCCCC
Confidence            1  145779999999999999954 2 3467788888888888888765  35569999999999999999999887665


Q ss_pred             CCCccc
Q 028222          203 PNKLHM  208 (212)
Q Consensus       203 ~~~~y~  208 (212)
                      +-.-||
T Consensus       201 sHgg~T  206 (346)
T d1n4qb_         201 SHGGST  206 (346)
T ss_dssp             BCHHHH
T ss_pred             ccHHHH
Confidence            544443

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=99.37  E-value=1.1e-12  Score=109.00  Aligned_cols=128  Identities=18%  Similarity=0.164  Sum_probs=77.8

Q ss_pred             HHHHHHHhcccCCCceee-cCCCCChhhhhhcCcccccchhhcccCcc--chHHHHHHHHHHHHhhCCccchhHHHHHHH
Q 028222           54 DAANFMLYIQSKTGGITG-WEPAGAPSWIELLNPIEFLDEVIIEHDYV--ECTASALKAMTLFQKLYPKHKKNEVNNFIT  130 (212)
Q Consensus        54 ~av~~Ll~~Q~~dGgw~~-~~~~~~~~~~~~l~~~e~~~~~~~d~~~~--~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~  130 (212)
                      +..++|++.|+++|||+- +...      +.+     +++...+.+.+  +.|...|+.|++......   .+++.+++.
T Consensus        27 ~~Ad~ll~~Q~~~GGW~Kn~d~~------~~~-----~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~---d~~~~~A~~   92 (324)
T d1gxma_          27 SRADVVLSYQQNNGGWPKNLDYN------SVG-----NGGGGNESGTIDNGATITEMVFLAEVYKSGG---NTKYRDAVR   92 (324)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTT------TCC-----CCCCCCSCEECGGGTTHHHHHHHHHHHHHHC---CHHHHHHHH
T ss_pred             hhhHHHHhcCCCCCCCCcccccc------CCC-----CCccCCCCCcccChHHHHHHHHHHHHHHhcC---ChhHHHHHH
Confidence            457899999999999971 1111      001     11100111222  347777888888765432   255779999


Q ss_pred             HHHHHHHhccccCCCcCCCCc--------cchhh-HHHHHHHHH--HHcCcCC------------CChHHHHHHHHHHHh
Q 028222          131 NGVKFTEDSQKLDGSWYGTWG--------VCFIY-STWWAISGL--VAAEKTY------------SNCLAIRKATDFLLN  187 (212)
Q Consensus       131 ra~~~L~~~Q~~dG~w~g~~~--------~~~~~-~T~~al~aL--~~~g~~~------------~~~~~i~~a~~~Ll~  187 (212)
                      ||++||++.|.+||||+.-+-        ..+.. .+.-++.-|  ...+...            +...+++||++||++
T Consensus        93 Rgi~~LL~~Q~~nGGWpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~  172 (324)
T d1gxma_          93 KAANFLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILK  172 (324)
T ss_dssp             HHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccCCCCccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHHHH
Confidence            999999999999999975321        11111 122222222  2222211            135789999999999


Q ss_pred             cccCCCcc
Q 028222          188 IQCDDGGW  195 (212)
Q Consensus       188 ~Q~~dGgw  195 (212)
                      +|..+|||
T Consensus       173 ~Q~~~gg~  180 (324)
T d1gxma_         173 AQWKQNGV  180 (324)
T ss_dssp             HSCEETTE
T ss_pred             hhcccCCC
Confidence            99998885

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.2e-10  Score=96.44  Aligned_cols=175  Identities=15%  Similarity=0.127  Sum_probs=112.1

Q ss_pred             CCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhh
Q 028222            4 HISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIEL   83 (212)
Q Consensus         4 ~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~   83 (212)
                      |++.|||++-.  ...+++=.||.++.+|..+.+.     + ..+++.+.+.+.|+++.|..+|+|..............
T Consensus        65 Q~~dGgf~~w~--~~~~~~wlTayv~~~L~~A~~~-----g-~~~~~~~~~~~~~~l~~q~~~g~~~~~~~~~~~~~~~~  136 (326)
T d1hzfa_          65 RKADGSYAAWL--SRDSSTWLTAFVLKVLSLAQEQ-----V-GGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGG  136 (326)
T ss_dssp             BCTTSCBCSST--TSCCCHHHHHHHHHHHHHHGGG-----T-CCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGG
T ss_pred             cCCCCCcccCC--CCCCchHHHHHHHHHHHHHHHh-----c-ccchhhHHhHHHHHHHHhhhcccccccccccCHHHhcc
Confidence            78999999643  2345666899999999998652     1 25789999999999999999999974322111110000


Q ss_pred             cCcccccchhhcccCccchHHHHHHHHHHHHhhCCcc----chhHHHHHHHHHHHHHHhccccC----------------
Q 028222           84 LNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH----KKNEVNNFITNGVKFTEDSQKLD----------------  143 (212)
Q Consensus        84 l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~----~~~~i~~~i~ra~~~L~~~Q~~d----------------  143 (212)
                               .......+..|+.++.+|...+......    -..++..++.||++||.+...++                
T Consensus       137 ---------~~~~~~~~~~tAyvl~aL~~~~~~~~~~~~~~~~~~~~~~i~kA~~~l~~~~~~~~~~~y~~a~~a~al~~  207 (326)
T d1hzfa_         137 ---------LVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTL  207 (326)
T ss_dssp             ---------GSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             ---------ccccccchhHHHHHHHHHHHcccccccchhhhhHhhHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHH
Confidence                     0001123345888999998876432211    11345667888888876543321                


Q ss_pred             -----------------------CC--cCC-----------------------CCccchhhHHHHHHHHHHHcCcCCCCh
Q 028222          144 -----------------------GS--WYG-----------------------TWGVCFIYSTWWAISGLVAAEKTYSNC  175 (212)
Q Consensus       144 -----------------------G~--w~g-----------------------~~~~~~~~~T~~al~aL~~~g~~~~~~  175 (212)
                                             ++  |..                       .+....+..|+++|+++......   .
T Consensus       208 ~~~~~~~~~~~~~~l~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~iettayaLla~~~~~~~---~  284 (326)
T d1hzfa_         208 TKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGK---A  284 (326)
T ss_dssp             TTCCHHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTCS---S
T ss_pred             cCCchHHHHHHHHHHHHHHhhccccceecccccccccccccccccccCCCCCcccchHHHHHHHHHHHHHHhcCCC---c
Confidence                                   10  100                       00111345688999988876543   5


Q ss_pred             HHHHHHHHHHHhcccCCCccccc
Q 028222          176 LAIRKATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       176 ~~i~~a~~~Ll~~Q~~dGgw~~~  198 (212)
                      +.+++.++||++.|+.+|||...
T Consensus       285 ~~~~~~~~WL~~qr~~~Ggw~ST  307 (326)
T d1hzfa_         285 EMADQASAWLTRQGSFQGGFRST  307 (326)
T ss_dssp             HHHHHHHHHHHHHTTSTTCSCSH
T ss_pred             hhHHHHHHHHHHhccCCCCCccH
Confidence            67899999999999999999854

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.5e-08  Score=80.75  Aligned_cols=176  Identities=14%  Similarity=0.050  Sum_probs=100.9

Q ss_pred             CCCCCCccccccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhh
Q 028222            3 RHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE   82 (212)
Q Consensus         3 ~~~~~Ggw~~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~   82 (212)
                      .|+++|||+|-.  ...++.=.|+.++..|..+.+.     +....+..+..+..++.+.|+.+|.|......-...+..
T Consensus        66 ~Q~~dGgf~~w~--~~~~~~~lTayv~~~L~~A~~~-----g~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~  138 (294)
T d1c3da_          66 FRQPSSAFAAFV--KRAPSTWLTAYVVKVFSLAVNL-----IAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIG  138 (294)
T ss_dssp             TBCTTSCBCSST--TSCCCHHHHHHHHHHHHHTTTT-----SCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGG
T ss_pred             hcCCCCCcccCC--CCCCCcchHHHHHHHHHHHHHh-----cccChHHHHHHHHHHHHhhhhcCCCccccchHhHHHHhc
Confidence            488999999643  3345666899999999998652     233444555555555667788888876322111100000


Q ss_pred             hcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcc----------------------
Q 028222           83 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ----------------------  140 (212)
Q Consensus        83 ~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q----------------------  140 (212)
                      ..        .......+..++.++.+|...+...+.. ...+...+.++.+||.+..                      
T Consensus       139 ~~--------~~~~~~~~~~~ay~~~~L~~~~~~~~~~-~~~~~~~~~ka~~~l~~~~~~~~~~~~la~~~~~l~~~~~~  209 (294)
T d1c3da_         139 GL--------RNNNEKDMALTAFVLISLQEAKDICEEQ-VNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRL  209 (294)
T ss_dssp             GG--------GSCTTHHHHHHHHHHHHHHHTHHHHTTT-CTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCC
T ss_pred             cc--------ccccchHHHHHHHHHHHHHhccccchHH-HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHhHHH
Confidence            00        0001122345778888887765442221 1223344555555543221                      


Q ss_pred             -----------ccCCCcCCCCc--cchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhcccCCCccccc
Q 028222          141 -----------KLDGSWYGTWG--VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES  198 (212)
Q Consensus       141 -----------~~dG~w~g~~~--~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~~dGgw~~~  198 (212)
                                 ..++.+...|+  ...+..|+++|.++...+..    +.+++.++||++.++.+|+|+..
T Consensus       210 ~~~~~~~~~~~~~~~~~w~~~~~~~~~ietta~alla~~~~~~~----~~~~~~~~wL~~qr~~~g~w~ST  276 (294)
T d1c3da_         210 KGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF----DFVPPVVRWLNEQRYYGGGYGST  276 (294)
T ss_dssp             CHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT----TTHHHHHHHHHHTTCCCCSTTCH
T ss_pred             HHHHHHHHHHhcccCCCCCCCCCccchHHHHHHHHHHHHhcCCh----hhHHHHHHHHHHcccCCCCCccH
Confidence                       11222212222  22345688999999887643    35777899999999999999854

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.6e-08  Score=82.07  Aligned_cols=114  Identities=17%  Similarity=0.122  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHHH
Q 028222           50 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI  129 (212)
Q Consensus        50 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i  129 (212)
                      +.|++++.-|+++|++||||+.|....                     +++-.|+.|+.+|..+......     +...+
T Consensus        52 ~~i~~g~~rl~~~Q~~dGgf~~w~~~~---------------------~~~wlTayv~~~L~~A~~~g~~-----~~~~~  105 (326)
T d1hzfa_          52 DLIQKGYMRIQQFRKADGSYAAWLSRD---------------------SSTWLTAFVLKVLSLAQEQVGG-----SPEKL  105 (326)
T ss_dssp             HHHHHHHHHHHTTBCTTSCBCSSTTSC---------------------CCHHHHHHHHHHHHHHGGGTCC-----CHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccCCCCC---------------------CchHHHHHHHHHHHHHHHhccc-----chhhH
Confidence            468999999999999999999764322                     2334699999999987654221     24678


Q ss_pred             HHHHHHHHhccccCCCcCCCCc-------------cchhhHHHHHHHHHHHcCcCCC----------ChHHHHHHHHHHH
Q 028222          130 TNGVKFTEDSQKLDGSWYGTWG-------------VCFIYSTWWAISGLVAAEKTYS----------NCLAIRKATDFLL  186 (212)
Q Consensus       130 ~ra~~~L~~~Q~~dG~w~g~~~-------------~~~~~~T~~al~aL~~~g~~~~----------~~~~i~~a~~~Ll  186 (212)
                      .+++.|+++.|.++|+|.....             .....-|++++.+|...+....          ....+.+|++||.
T Consensus       106 ~~~~~~~l~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~tAyvl~aL~~~~~~~~~~~~~~~~~~~~~~i~kA~~~l~  185 (326)
T d1hzfa_         106 QETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLG  185 (326)
T ss_dssp             HHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHhhhcccccccccccCHHHhccccccccchhHHHHHHHHHHHcccccccchhhhhHhhHHHHHHHHHHHHH
Confidence            9999999999999999853210             1123457899999988755321          2456788888886


Q ss_pred             hcc
Q 028222          187 NIQ  189 (212)
Q Consensus       187 ~~Q  189 (212)
                      +..
T Consensus       186 ~~~  188 (326)
T d1hzfa_         186 EKA  188 (326)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=9.4e-08  Score=77.47  Aligned_cols=76  Identities=14%  Similarity=0.127  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccCCCcC-CCCccchhhHHHHHHHHHHHcCcCCCChHHHHHHHH
Q 028222          105 SALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWY-GTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATD  183 (212)
Q Consensus       105 ~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~dG~w~-g~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~  183 (212)
                      -.|++|-..+...+       .+..+++++||.++|++||||+ ..++.+..++|+.+..||..+|.+. +.+.++||.+
T Consensus         8 ~~Vial~i~g~~~~-------~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~-~~p~m~rAr~   79 (279)
T d1w6ka2           8 GLLITCHVARIPLP-------AGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGP-DDPDLVRARN   79 (279)
T ss_dssp             HHHHHHHHHTCCCC-------TTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCT-TSHHHHHHHH
T ss_pred             HHHHHHhhcCCCCC-------HHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCC-CcHHHHHHHH
Confidence            34566655543212       2457889999999999999994 3556778999999999999999876 7899999999


Q ss_pred             HHHhc
Q 028222          184 FLLNI  188 (212)
Q Consensus       184 ~Ll~~  188 (212)
                      ||+++
T Consensus        80 wI~~~   84 (279)
T d1w6ka2          80 ILHKK   84 (279)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            99987

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.1e-07  Score=75.35  Aligned_cols=69  Identities=10%  Similarity=0.048  Sum_probs=53.7

Q ss_pred             CCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhH
Q 028222           45 EKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNE  124 (212)
Q Consensus        45 ~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~  124 (212)
                      .+.+++..+++++||.++||+||||+.+..                     +++++..|+.+..||..++.. ++     
T Consensus        18 ~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~---------------------g~s~i~~T~~ay~ALrl~G~~-~~-----   70 (279)
T d1w6ka2          18 IPLPAGYREEIVRYLRSVQLPDGGWGLHIE---------------------DKSTVFGTALNYVSLRILGVG-PD-----   70 (279)
T ss_dssp             CCCCTTHHHHHHHHHHHHSCTTSCBCSBTT---------------------SCCBHHHHHHHHHHHHHTTCC-TT-----
T ss_pred             CCCCHHHHHHHHHHHHHhhcCCCCccCCCC---------------------CCccHHHHHHHHHHHHHhCCC-CC-----
Confidence            356778899999999999999999985432                     234566799999999888642 22     


Q ss_pred             HHHHHHHHHHHHHhccc
Q 028222          125 VNNFITNGVKFTEDSQK  141 (212)
Q Consensus       125 i~~~i~ra~~~L~~~Q~  141 (212)
                       .++++||.+||+++--
T Consensus        71 -~p~m~rAr~wI~~~GG   86 (279)
T d1w6ka2          71 -DPDLVRARNILHKKGG   86 (279)
T ss_dssp             -SHHHHHHHHHHHHTTC
T ss_pred             -cHHHHHHHHHHHhCCC
Confidence             3689999999998843

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.8e-06  Score=69.38  Aligned_cols=115  Identities=18%  Similarity=0.060  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchhHHHHH
Q 028222           49 PERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNF  128 (212)
Q Consensus        49 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~  128 (212)
                      .+.|++++.=|+++|++||||+.|.+..                     +++-.|+.++..|..........  +  ...
T Consensus        53 ~~~i~~gi~rl~~~Q~~dGgf~~w~~~~---------------------~~~~lTayv~~~L~~A~~~g~~~--~--~~~  107 (294)
T d1c3da_          53 LELIKKGYTQQLAFRQPSSAFAAFVKRA---------------------PSTWLTAYVVKVFSLAVNLIAID--S--QVL  107 (294)
T ss_dssp             HHHHHHHHHHHHTTBCTTSCBCSSTTSC---------------------CCHHHHHHHHHHHHHTTTTSCCC--H--HHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCcccCCCCC---------------------CCcchHHHHHHHHHHHHHhcccC--h--HHH
Confidence            3468999999999999999999764322                     23336999999999875442211  1  234


Q ss_pred             HHHHHHHHHhccccCCCcCCCCc--------------cchhhHHHHHHHHHHHcCcCC-----CChHHHHHHHHHHHhc
Q 028222          129 ITNGVKFTEDSQKLDGSWYGTWG--------------VCFIYSTWWAISGLVAAEKTY-----SNCLAIRKATDFLLNI  188 (212)
Q Consensus       129 i~ra~~~L~~~Q~~dG~w~g~~~--------------~~~~~~T~~al~aL~~~g~~~-----~~~~~i~~a~~~Ll~~  188 (212)
                      .+++..++.+.|..+|.|.....              .....-+++++.+|...+...     .....+.++.+|+.+.
T Consensus       108 ~~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ay~~~~L~~~~~~~~~~~~~~~~~~~ka~~~l~~~  186 (294)
T d1c3da_         108 CGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEAN  186 (294)
T ss_dssp             HHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHTHHHHTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcCCCccccchHhHHHHhcccccccchHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence            55566666777888988743210              112345788888888876432     1234566777776543

>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Bacterial glucoamylase C-terminal domain-like
domain: Glucodextranase, domain A
species: Arthrobacter globiformis [TaxId: 1665]

Probab=96.56  E-value=0.016  Score=48.03  Aligned_cols=119  Identities=12%  Similarity=0.009  Sum_probs=76.4

Q ss_pred             CCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcc-cCCCceeecC-CCCChhhhhhcCcccccchhh
Q 028222           17 HGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ-SKTGGITGWE-PAGAPSWIELLNPIEFLDEVI   94 (212)
Q Consensus        17 ~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q-~~dGgw~~~~-~~~~~~~~~~l~~~e~~~~~~   94 (212)
                      +.+.-+-|++.++.+|..++.           .+..++.++||.+.| +++|.|..-. .+...               .
T Consensus        53 Yry~W~RDaa~~~~al~~~G~-----------~~~a~~~~~~l~~~~~~~~G~~~~~y~~dg~~---------------~  106 (413)
T d1ulva1          53 YHAVWARDMYQSVTALLAAGD-----------EEAAARGVEWLFTYQQQPDGHFPQTSRVDGTI---------------G  106 (413)
T ss_dssp             TCSBCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHTCCTTSCCCSCBCTTSCB---------------C
T ss_pred             ceeecHhhHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHhhCCCCccccccccCCCc---------------C
Confidence            556677899999999988742           467889999999877 5788886321 11000               0


Q ss_pred             cccCccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhccccC--CCcCCCCccchhhHHHHHHHHHH
Q 028222           95 IEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLD--GSWYGTWGVCFIYSTWWAISGLV  166 (212)
Q Consensus        95 ~d~~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~d--G~w~g~~~~~~~~~T~~al~aL~  166 (212)
                      ..+...|.|+.+|.++..+...    ....+.+.|+++++||...-...  +-|....+ .+.+..+.+..||.
T Consensus       107 ~~~~Q~D~~g~~l~~~~~~~~~----~~~~~~~~i~~a~~~l~~~~~~~~~~lWEe~~g-~~~~T~~~~~~aL~  175 (413)
T d1ulva1         107 QNGIQLDETAFPILLANQIGRT----DAGFYRNELKPAADYLVAAGPKTPQERWEETGG-YSTSTLASQIAALA  175 (413)
T ss_dssp             CCCCBTHHHHHHHHHHHHHTCC----CHHHHHHTHHHHHHHHHHHCSCBSBCTTSSCCB-EEHHHHHHHHHHHH
T ss_pred             CCcCccchHHHHHHHHHHHhhh----cchHHHHHHHHHHHHHHHcCCCCCccccccCCC-ceeehHHHHHHHHH
Confidence            0122346788888888776432    23446688999999998885443  34432222 34555665656664

>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Bacterial glucoamylase C-terminal domain-like
domain: Bacterial glucoamylase, C-terminal domain
species: Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]

Probab=95.56  E-value=0.016  Score=47.59  Aligned_cols=118  Identities=8%  Similarity=0.003  Sum_probs=71.9

Q ss_pred             CCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhccc
Q 028222           18 GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEH   97 (212)
Q Consensus        18 ~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~   97 (212)
                      .+.-.-|++.++++|+.++.           .+..++.++||...|+++|.|+.-....              +......
T Consensus        51 ~y~W~RDaa~~~~al~~~G~-----------~~~a~~~l~~l~~~~~~~G~~~~~~~~~--------------G~~~~~~  105 (397)
T d1lf6a1          51 HLVWSRDLYHVANAFIAAGD-----------VDSANRSLDYLAKVVKDNGMIPQNTWIS--------------GKPYWTG  105 (397)
T ss_dssp             GSBCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHHSSCCSCBCTT--------------SCBCCCC
T ss_pred             eeEcHhhHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHhcccCCCCCCCCcC--------------CCccccC
Confidence            34456799999999988742           4667899999999999999986321110              0000112


Q ss_pred             CccchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcccc-C-CCcCCCCccchhhHHHHHHHHHHH
Q 028222           98 DYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKL-D-GSWYGTWGVCFIYSTWWAISGLVA  167 (212)
Q Consensus        98 ~~~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q~~-d-G~w~g~~~~~~~~~T~~al~aL~~  167 (212)
                      ...|.++..+.++..+...      ....+.|+++++||...-+. + +-|....+ .+.+..+....||.+
T Consensus       106 ~q~D~~g~~i~a~~~~~~~------~~~~~~i~~~~~~l~~~~~~~~~~lWEe~~g-~~~~t~~~~~~aL~~  170 (397)
T d1lf6a1         106 IQLDEQADPIILSYRLKRY------DLYDSLVKPLADFIIKIGPKTGQERWEEIGG-YSPATMAAEVAGLTC  170 (397)
T ss_dssp             CCHHHHHHHHHHHHHTTCG------GGTTTTHHHHHHHHHHHCSSBSSCTTSSCCB-BCHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHhc------chhHHHHHHHHHHHHHhCCCCccccccccCC-cccchhHHHHHHHHH
Confidence            3346788888877766432      12346789999999887443 2 34433322 234444444445533

>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: N-acylglucosamine (NAG) epimerase
domain: N-acyl-D-glucosamine 2-epimerase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.19  E-value=0.12  Score=42.22  Aligned_cols=97  Identities=9%  Similarity=0.003  Sum_probs=62.6

Q ss_pred             chHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhc---cccCCCcCCCC--------ccchhhHHHHHHHHHHHcC
Q 028222          101 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDS---QKLDGSWYGTW--------GVCFIYSTWWAISGLVAAE  169 (212)
Q Consensus       101 ~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~---Q~~dG~w~g~~--------~~~~~~~T~~al~aL~~~g  169 (212)
                      .+++..|-.++.+.........++..+.++++++||.+.   ..++|+|.-..        .....|..++++.|++.+-
T Consensus        56 ~~~~R~l~~fs~a~~~~~~~~~~~~~~~a~~g~~~L~~~~~~d~~~Gg~~~~vd~dG~~~~~~k~~Yd~Af~l~a~a~~~  135 (402)
T d1fp3a_          56 WLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELW  135 (402)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHH
T ss_pred             eeeHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhCCccCCCCCEEEEECCCCCcCcccccccccHHHHHHHHHHH
Confidence            356666777766543322233466778899999999885   46778885221        1235689999999997653


Q ss_pred             cC---CCChHHHHHHHHHHHhc-ccCCCcccc
Q 028222          170 KT---YSNCLAIRKATDFLLNI-QCDDGGWGE  197 (212)
Q Consensus       170 ~~---~~~~~~i~~a~~~Ll~~-Q~~dGgw~~  197 (212)
                      ..   +...+.+++.+++|.+. ..++||+..
T Consensus       136 ~~tg~~~~~~~a~~~~~~i~~~~~~~~~g~~~  167 (402)
T d1fp3a_         136 RVTAEARYQSEAVDMMDQIVHWVREDPSGLGR  167 (402)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHTCGGGGCC
T ss_pred             hccCCHHHHHHHHHHHHHHHHHhhcccCCCCc
Confidence            21   11356777888888764 456666543

>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Bacterial glucoamylase C-terminal domain-like
domain: Bacterial glucoamylase, C-terminal domain
species: Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]

Probab=95.18  E-value=0.067  Score=43.66  Aligned_cols=123  Identities=9%  Similarity=-0.006  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhcccC--CCceeecCCCCChhhhhhcCcccccch-hhcccCc--cchHHHHHHHHHHHHhhCCccchh
Q 028222           49 PERFYDAANFMLYIQSK--TGGITGWEPAGAPSWIELLNPIEFLDE-VIIEHDY--VECTASALKAMTLFQKLYPKHKKN  123 (212)
Q Consensus        49 ~~~i~~av~~Ll~~Q~~--dGgw~~~~~~~~~~~~~~l~~~e~~~~-~~~d~~~--~~~Ta~al~aL~~~~~~~~~~~~~  123 (212)
                      .+-+++.+--|+..|+.  .|+.-.-+...       +|  |..++ ...|+..  +-.++.++.+|...+.        
T Consensus         8 ~~~~~~s~~~lk~~~~~~~~GaiiAsptt~-------~~--e~~~~~~~~~Y~y~W~RDaa~~~~al~~~G~--------   70 (397)
T d1lf6a1           8 NSLYYNSMMILKASEDKTNKGAYIASLSIP-------WG--DGQRDDNTGGYHLVWSRDLYHVANAFIAAGD--------   70 (397)
T ss_dssp             CHHHHHHHHHHHTTBCSSSTTCBCSCSSCT-------TG--GGSBSBSCCGGGSBCHHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHHHHccCCCCCceEEEeCCCC-------cc--cccCCCCCCCCeeEcHhhHHHHHHHHHHcCC--------
Confidence            56778888888888864  58885322111       10  00111 1112222  2347777778776642        


Q ss_pred             HHHHHHHHHHHHHHhccccCCCcCCC--------CccchhhHHHHHHHHHHHcCcCCCChHHHHHHHHHHHhccc
Q 028222          124 EVNNFITNGVKFTEDSQKLDGSWYGT--------WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC  190 (212)
Q Consensus       124 ~i~~~i~ra~~~L~~~Q~~dG~w~g~--------~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~Ll~~Q~  190 (212)
                        .+..++.++||.+.|.++|.|+..        |......++++.+.++..........+.|+++++||...-+
T Consensus        71 --~~~a~~~l~~l~~~~~~~G~~~~~~~~~G~~~~~~~q~D~~g~~i~a~~~~~~~~~~~~~i~~~~~~l~~~~~  143 (397)
T d1lf6a1          71 --VDSANRSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYDLYDSLVKPLADFIIKIGP  143 (397)
T ss_dssp             --HHHHHHHHHHHHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGGGTTTTHHHHHHHHHHHCS
T ss_pred             --HHHHHHHHHHHHHHhcccCCCCCCCCcCCCccccCCCCchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhCC
Confidence              145788999999999999988532        22223456777788887776554467899999999988644

>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Bacterial glucoamylase C-terminal domain-like
domain: Glucodextranase, domain A
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.86  E-value=0.35  Score=39.48  Aligned_cols=124  Identities=14%  Similarity=0.024  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHhcccC--CCceeecCCCCChhhhhhcCcccccchhhcc-cCc--cchHHHHHHHHHHHHhhCCccchh
Q 028222           49 PERFYDAANFMLYIQSK--TGGITGWEPAGAPSWIELLNPIEFLDEVIIE-HDY--VECTASALKAMTLFQKLYPKHKKN  123 (212)
Q Consensus        49 ~~~i~~av~~Ll~~Q~~--dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d-~~~--~~~Ta~al~aL~~~~~~~~~~~~~  123 (212)
                      .+..++.+--|+.+|+.  .|+.-.-+...       +| ...++....| +-+  +-.++.++.+|..++.        
T Consensus        10 ~~~~~~S~l~lk~~~~~~~~GaiiAapt~~-------~p-e~~~~~~n~d~Yry~W~RDaa~~~~al~~~G~--------   73 (413)
T d1ulva1          10 RTQYDVSLMTVKSHEDKTFPGAFIASLTIP-------WG-QAASAETHREGYHAVWARDMYQSVTALLAAGD--------   73 (413)
T ss_dssp             HHHHHHHHHHHHTTBCSSSTTCBCSCSSCT-------TG-GGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHHHHcccCCCCCeEEEeCCCC-------CC-cccCCccCCCCceeecHhhHHHHHHHHHHcCC--------
Confidence            46678888888888753  58874322110       10 0111111222 222  2346777788877753        


Q ss_pred             HHHHHHHHHHHHHHhcc-ccCCCcCCCC--------ccchhhHHHHHHHHHHHcCcCCC--ChHHHHHHHHHHHhccc
Q 028222          124 EVNNFITNGVKFTEDSQ-KLDGSWYGTW--------GVCFIYSTWWAISGLVAAEKTYS--NCLAIRKATDFLLNIQC  190 (212)
Q Consensus       124 ~i~~~i~ra~~~L~~~Q-~~dG~w~g~~--------~~~~~~~T~~al~aL~~~g~~~~--~~~~i~~a~~~Ll~~Q~  190 (212)
                        .+..++.++||.+.| .++|.|..+.        ......+|++.+.++...+....  ..+.|+++++||.+.-.
T Consensus        74 --~~~a~~~~~~l~~~~~~~~G~~~~~y~~dg~~~~~~~Q~D~~g~~l~~~~~~~~~~~~~~~~~i~~a~~~l~~~~~  149 (413)
T d1ulva1          74 --EEAAARGVEWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRTDAGFYRNELKPAADYLVAAGP  149 (413)
T ss_dssp             --HHHHHHHHHHHHHHTCCTTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTCCCHHHHHHTHHHHHHHHHHHCS
T ss_pred             --HHHHHHHHHHHHHHhhCCCCccccccccCCCcCCCcCccchHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHcCC
Confidence              146789999999987 5789886432        22234567788888877655421  36789999999988654

>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Hypothetical protein YteR
domain: Hypothetical protein YteR
species: Bacillus subtilis [TaxId: 1423]

Probab=91.70  E-value=0.17  Score=40.77  Aligned_cols=97  Identities=7%  Similarity=-0.046  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhhc-CCCCCcCCCCcHHHHHHHHHHHHhcccCC-CceeecCCCCChhhhhhcCcccccchhhcccCccch
Q 028222           25 SSESFVCCLHLST-MPPEIVGEKMEPERFYDAANFMLYIQSKT-GGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVEC  102 (212)
Q Consensus        25 Ta~~l~al~~~~~-~~~~~~~~~~~~~~i~~av~~Ll~~Q~~d-Ggw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~  102 (212)
                      .+=++.+|..+.+ .|..+...+...+..++.++.|++.|.+| |-|.....+          |.+ +      .+..++
T Consensus       205 ngW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~q~~d~G~w~~~~d~----------p~~-~------~~~~et  267 (363)
T d1nc5a_         205 IGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDK----------GDR-S------DNWLES  267 (363)
T ss_dssp             HHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTC----------TTS-T------TCCBCH
T ss_pred             chHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhccCCCCccccccccC----------CCC-C------CCccch
Confidence            5677888887544 34322223344567888999999999887 555422110          000 0      112344


Q ss_pred             HH--HHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcc
Q 028222          103 TA--SALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ  140 (212)
Q Consensus       103 Ta--~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q  140 (212)
                      ++  ..+.+|......  +.-.+++.++++|+.+-|.+.-
T Consensus       268 Sata~~~y~l~~g~~~--g~l~~~y~~~~~ka~~~l~~~~  305 (363)
T d1nc5a_         268 SGSCLYMYAIAKGINK--GYLDRAYETTLLKAYQGLIQHK  305 (363)
T ss_dssp             HHHHHHHHHHHHHHHH--TSSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHHHHH
Confidence            44  444455543332  1112457789999999998754

>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Hypothetical protein YteR
domain: Hypothetical protein YteR
species: Bacillus subtilis [TaxId: 1423]

Probab=90.77  E-value=1.7  Score=34.45  Aligned_cols=87  Identities=14%  Similarity=0.096  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHhhCCc-c-chhHHHHHHHHHHHHHHhccccC-CCcCCCCcc-------chhhHHHHHHHHHHH---cC
Q 028222          103 TASALKAMTLFQKLYPK-H-KKNEVNNFITNGVKFTEDSQKLD-GSWYGTWGV-------CFIYSTWWAISGLVA---AE  169 (212)
Q Consensus       103 Ta~al~aL~~~~~~~~~-~-~~~~i~~~i~ra~~~L~~~Q~~d-G~w~g~~~~-------~~~~~T~~al~aL~~---~g  169 (212)
                      .+-++.+|....+..|. + .++++.+..++.++.|++.|.+| |-|......       ..+.+|++.+.+|..   .|
T Consensus       205 ngW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~q~~d~G~w~~~~d~p~~~~~~~etSata~~~y~l~~g~~~g  284 (363)
T d1nc5a_         205 IGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKG  284 (363)
T ss_dssp             HHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhccCCCCccccccccCCCCCCCccchHHHHHHHHHHHHHHHcC
Confidence            55678888876654342 1 34567788899999999999876 777532210       134566666666643   34


Q ss_pred             cCC-CChHHHHHHHHHHHhcc
Q 028222          170 KTY-SNCLAIRKATDFLLNIQ  189 (212)
Q Consensus       170 ~~~-~~~~~i~~a~~~Ll~~Q  189 (212)
                      ... ...++++|+.+-|.+.-
T Consensus       285 ~l~~~y~~~~~ka~~~l~~~~  305 (363)
T d1nc5a_         285 YLDRAYETTLLKAYQGLIQHK  305 (363)
T ss_dssp             SSCGGGHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHH
Confidence            322 24789999999997744

>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant x100 [TaxId: 105351]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glucoamylase
domain: Glucoamylase
species: Aspergillus awamori, variant x100 [TaxId: 105351]

Probab=87.52  E-value=0.58  Score=39.27  Aligned_cols=145  Identities=11%  Similarity=0.047  Sum_probs=66.0

Q ss_pred             cccCCCCCCCCccHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHH---HHhcccCCCceeecCCCCChhhhhhcCccc
Q 028222           12 FSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANF---MLYIQSKTGGITGWEPAGAPSWIELLNPIE   88 (212)
Q Consensus        12 ~~~~~~~~~~~d~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~---Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e   88 (212)
                      .+.+++.+.-+-|.|.++.+|+.+....     ....-+.+.+-+++   |....+++|.+....... +..  .+. ..
T Consensus        43 ~s~PDYrY~W~RDaA~t~~AL~~~~~~~-----~~~~~~~i~~~i~~~~~lq~~~~~~G~~~~~~l~~-p~~--~~d-g~  113 (472)
T d1gaia_          43 TDNPDYFYTWTRDSGLVIKTLVDLFRNG-----DTDLLSTIEHYISSQAIIQGVSNPSGDLSSGGLGE-PKF--NVD-ET  113 (472)
T ss_dssp             BSSSBCCSEEHHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHHHCCBTTBCTTTTGGGC-CEE--CTT-SC
T ss_pred             CCCCCcEEechhhHHHHHHHHHHhcchh-----HHHHHHHHHHHHhhhhhhhcccCCCCcccCCcccC-cee--eec-CC
Confidence            3445777777889999999998764311     11112233333333   344567888774211000 000  000 00


Q ss_pred             ccchhhcccCccchHHHHHHHHHHHHhh-----CCccchhHHHHHHHHHHHHHHhccccC--CCcCCCCccchhhHHHHH
Q 028222           89 FLDEVIIEHDYVECTASALKAMTLFQKL-----YPKHKKNEVNNFITNGVKFTEDSQKLD--GSWYGTWGVCFIYSTWWA  161 (212)
Q Consensus        89 ~~~~~~~d~~~~~~Ta~al~aL~~~~~~-----~~~~~~~~i~~~i~ra~~~L~~~Q~~d--G~w~g~~~~~~~~~T~~a  161 (212)
                      .|.. .+..+..+..+.-..+|..+...     ......+.+.+.|++.++||.+.-+..  |-|..+-+ .+.|..+.+
T Consensus       114 ~~~~-~wgrpq~dG~al~~~al~~~~~~l~~~~~~~~~~~~~w~~v~~~~d~v~~~w~~pd~dlWEE~~g-~h~fT~a~~  191 (472)
T d1gaia_         114 AYTG-SWGRPQRDGPALRATAMIGFGQWLLDNGYTSAATEIVWPLVRNDLSYVAQYWNQTGYDLWEEVNG-SSFFTIAVQ  191 (472)
T ss_dssp             BCCS-CCSCCCTHHHHHHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHHTTSCEECTTSCCEE-EEHHHHHHH
T ss_pred             cCCC-cCCCcccccHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHhCCCccCCCCcccCC-cchhhHHHH
Confidence            0100 00011112222222233222211     111122334578999999998885443  44433222 344666666


Q ss_pred             HHHHHH
Q 028222          162 ISGLVA  167 (212)
Q Consensus       162 l~aL~~  167 (212)
                      ..||.+
T Consensus       192 ~~AL~~  197 (472)
T d1gaia_         192 HRALVE  197 (472)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            667754

>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyl Hydrolase Family 88
domain: Unsaturated glucuronyl hydrolase
species: Bacillus sp. GL1 [TaxId: 84635]

Probab=87.41  E-value=2.5  Score=33.92  Aligned_cols=137  Identities=13%  Similarity=0.040  Sum_probs=74.4

Q ss_pred             CCCCcHHHHHHHHHHHHhcccCCCceeecCCCCChhhhhhcCcccccchhhcccCccchHHHHHHHHHHHHhhCCccchh
Q 028222           44 GEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKN  123 (212)
Q Consensus        44 ~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~~~Ta~al~aL~~~~~~~~~~~~~  123 (212)
                      +++...+.+..+.+.|.+.=++.+|...+.......       ...+      ..-++ +.+.+..|..+++...   ++
T Consensus       105 gd~~y~~~a~~~a~~L~~r~~~~~g~~~~w~~~~~~-------~~~~------~~~iD-~lm~~~~l~~~~~~tg---d~  167 (377)
T d2d5ja1         105 KDESARKLALDAADVLMRRWRADAGIIQAWGPKGDP-------ENGG------RIIID-CLLNLPLLLWAGEQTG---DP  167 (377)
T ss_dssp             CCHHHHHHHHHHHHHHHTTEETTTTEECCSSSTTCT-------TTTT------EEEGG-GGGGHHHHHHHHHHHC---CH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcCCCccccCCCCCCC-------CCCc------cchhh-hhhhHHHHHHHHHhcC---CH
Confidence            344566777888888988767887776443221110       0000      00112 2244555665554322   12


Q ss_pred             HHHHHHHHHHHHH-HhccccCCCcC---------CCC-------c----cchhhHHHHHHHHHHHcCc---CCCChHHHH
Q 028222          124 EVNNFITNGVKFT-EDSQKLDGSWY---------GTW-------G----VCFIYSTWWAISGLVAAEK---TYSNCLAIR  179 (212)
Q Consensus       124 ~i~~~i~ra~~~L-~~~Q~~dG~w~---------g~~-------~----~~~~~~T~~al~aL~~~g~---~~~~~~~i~  179 (212)
                      ++.+.+.+-.++. ...+++|||-+         |.|       |    ..-.++.++++.+|..+-.   .+..-+..+
T Consensus       168 ~y~~~A~~h~~~~~~~l~r~d~s~~~~~~~~~~tG~~~~~~t~qG~~~~s~WsRGqaW~i~gl~~~~~~t~~~~~l~~a~  247 (377)
T d2d5ja1         168 EYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAK  247 (377)
T ss_dssp             HHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCCCcccCCCCCCCCCCcchHhhchHHHHHHHHHHHHHhCChHHHHHHH
Confidence            3333334434444 44567766442         111       1    1135788899999876422   111345678


Q ss_pred             HHHHHHHhcccCCCcccc
Q 028222          180 KATDFLLNIQCDDGGWGE  197 (212)
Q Consensus       180 ~a~~~Ll~~Q~~dGgw~~  197 (212)
                      +.++++++.|.+||-|..
T Consensus       248 ~~a~~~l~~~~~dgi~~w  265 (377)
T d2d5ja1         248 RMARHFLARVPEDGVVYW  265 (377)
T ss_dssp             HHHHHHHTTCCTTSCCBS
T ss_pred             HHHHHHHHhCCCCCCccc
Confidence            888999999999997654

>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: N-acylglucosamine (NAG) epimerase
domain: Putative NAG isomerase YihS
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.24  E-value=4.5  Score=32.54  Aligned_cols=94  Identities=15%  Similarity=0.197  Sum_probs=58.6

Q ss_pred             cchHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhcc-ccC-CCcCCC---C----ccchhhHHHHHHHHHHHcCc
Q 028222          100 VECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ-KLD-GSWYGT---W----GVCFIYSTWWAISGLVAAEK  170 (212)
Q Consensus       100 ~~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~Q-~~d-G~w~g~---~----~~~~~~~T~~al~aL~~~g~  170 (212)
                      +.+++..|-.++......    .++..+.++++++||++.. .++ |+|+..   .    .....|..++++.||+.+..
T Consensus        49 ~~~~aR~~~~fs~a~~~g----~~~~~~~A~~g~~fL~~~~~d~~~Gg~~~~~~~~~~~d~~k~~Y~~AF~l~ala~~~~  124 (411)
T d2afaa1          49 LWITARMLHVYSVAASMG----RPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVT  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTT----CTTHHHHHHHHHHHTTTTTBCTTTSSBCSEECSSSEEECCEEHHHHHHHHHHHHHHHT
T ss_pred             hHHhHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHhcCcCCCCeEEEeecCCCCcccchhhHHHHHHHHHHHHHHH
Confidence            445677777776654321    2345678999999999874 445 555321   1    12356889999999987533


Q ss_pred             CC--CChHHHHHHHHHHHhccc-C-CCcccc
Q 028222          171 TY--SNCLAIRKATDFLLNIQC-D-DGGWGE  197 (212)
Q Consensus       171 ~~--~~~~~i~~a~~~Ll~~Q~-~-dGgw~~  197 (212)
                      ..  ...+.+++.+++|.+... + .|++..
T Consensus       125 ~g~~~~~~~a~~~~~~l~~~~~~~~~G~~~~  155 (411)
T d2afaa1         125 TGHPEARKLLDYTIEVIEKYFWSEEEQMCLE  155 (411)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHTEETTTTEECC
T ss_pred             hCCHHHHHHHHHHHHHHHHHhhCccCCCchh
Confidence            21  235667888888877653 2 355554

>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: N-acylglucosamine (NAG) epimerase
domain: N-acyl-D-glucosamine 2-epimerase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.00  E-value=4.3  Score=32.33  Aligned_cols=106  Identities=6%  Similarity=-0.100  Sum_probs=61.5

Q ss_pred             cHHHHHHHHHHhhcCCCCCcCCCCcHHHHHHHHHHHHhc---ccCCCceeecCCCCChhhhhhcCcccccchhhcccCcc
Q 028222           24 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYI---QSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYV  100 (212)
Q Consensus        24 ~Ta~~l~al~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~---Q~~dGgw~~~~~~~~~~~~~~l~~~e~~~~~~~d~~~~  100 (212)
                      .++..|.++..+...- ...+.+...+.++++++||.+.   ...+|||. +.-+....             ..-+.-.+
T Consensus        57 ~~~R~l~~fs~a~~~~-~~~~~~~~~~~a~~g~~~L~~~~~~d~~~Gg~~-~~vd~dG~-------------~~~~~k~~  121 (402)
T d1fp3a_          57 LQGRQVWMYCRLYRKL-ERFHRPELLDAAKAGGEFLLRHARVAPPEKKCA-FVLTRDGR-------------PVKVQRSI  121 (402)
T ss_dssp             HHHHHHHHHHHHHHHC-GGGCCHHHHHHHHHHHHHHHHHTBSSTTSCCBC-SEECTTSC-------------EEECCSSS
T ss_pred             eeHHHHHHHHHHHHHh-cccCCHHHHHHHHHHHHHHHHhCCccCCCCCEE-EEECCCCC-------------cCcccccc
Confidence            4456666665432110 0012344567899999999874   56789996 32221110             00011234


Q ss_pred             chHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHhc-cccCCCcC
Q 028222          101 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDS-QKLDGSWY  147 (212)
Q Consensus       101 ~~Ta~al~aL~~~~~~~~~~~~~~i~~~i~ra~~~L~~~-Q~~dG~w~  147 (212)
                      ..-+.+|.+++.+.....   .+...+.+.+.+++|.+. ..++|+++
T Consensus       122 Yd~Af~l~a~a~~~~~tg---~~~~~~~a~~~~~~i~~~~~~~~~g~~  166 (402)
T d1fp3a_         122 FSECFYTMAMNELWRVTA---EARYQSEAVDMMDQIVHWVREDPSGLG  166 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHTCGGGGC
T ss_pred             cccHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence            457788888887765432   245567788889999775 56777664