Citrus Sinensis ID: 028245

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MMLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Secondary Structure (PSIPRED)
ccccccEEEEEccccHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEcccHHHHHHHHHHHHccccccccEEEEccccccccccEEEEEEEccccEEEccEEEEEEEEcccccccccEEEEEEEcccccccccEEEEEEEEEcccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccccHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHcccEEEccccccccccEEEEEEccccccEEccEEEEEEEccccccccccEEEEEEccccccccccccEEEEEEEccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MMLTGMVFlswgrptpqeqkacidksgvfnydtkykgatakpvaclkedqglskdgflLNHARVLVGSGLETYEKGKTALKTWRHfglnwafvdpktpiqngvKFCVCVkeflpwvtlpLQIVYVNESIrkkktaasfgfgsgtlQGHLLQAGeerfsielddnnqVWYEIVSFskpadflsfigypyVQLRQKYFAHQSVNAVKKHLTAS
Flexible Loop (DISEMBL)
MMLTGMVFlswgrptpqEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Low Complexity Region (SEG)
MMLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Disordered region (IsUnstruct)
****GMVFLSWGRP****QKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNA********
Disordered Region (DISOPRED)
****GMVFLSWGRPTPQ***********FNYDTKYKGATAKPVAC**EDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKH****
Disordered Region (DISEMBL)
MMLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Disordered Region (DISPRO)
*MLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q8GXB1	205	UPF0548 protein At2g17695	yes	no	0.971	1.0	0.674	2e-83
Q86JL6	216	UPF0548 protein OS=Dictyo	yes	no	0.725	0.708	0.325	1e-16
Q9RST8	198	UPF0548 protein DR_2035 O	yes	no	0.696	0.742	0.309	2e-10

>sp|Q8GXB1|U548_ARATH UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2 SV=1

 Score =  308 bits (788), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 171/206 (83%), Gaps = 1/206 (0%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSWGRP+ ++Q+  I+K+G FNYD KY+G +++ +A LKED  + KDGFL+NHARVL
Sbjct: 1   MVFLSWGRPSSEQQQQVINKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG E+YEKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct: 61  VGSGRESYEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIG 185
           +ES + +K  A FG+GSGTLQGHLL AGEE+FSIELD N +VWYEI SFSKPA FLSF+G
Sbjct: 121 DESRKSRKGPAHFGYGSGTLQGHLL-AGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLG 179

Query: 186 YPYVQLRQKYFAHQSVNAVKKHLTAS 211
           YPYV+LRQK+FA  S  AV KH+ AS
Sbjct: 180 YPYVKLRQKHFARHSSEAVLKHVNAS 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q86JL6|U548_DICDI UPF0548 protein OS=Dictyostelium discoideum GN=DDB_G0271742 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 10/163 (6%)

Query: 57  FLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWA-FVDPKTPIQNGVKFCVCVKEFLPW 115
           F ++  ++ +G+G+E ++K   ALK W+HF L+W  F    TPI  G    +  K+   W
Sbjct: 50  FDVDQVKIQLGTGVECFQKAVAALKQWKHFDLDWVDFYFKNTPIAVGETVGILSKQVGFW 109

Query: 116 VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIE-------LDDNNQVW 168
           +    +I Y+ +   ++  +  FG+  GTL+ H ++ GEERF IE         D   V+
Sbjct: 110 ILSFARINYLYDG-DQEDGSIKFGYSYGTLKDH-VEKGEERFVIEWVRDPDGAPDKGAVY 167

Query: 169 YEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS 211
           YE++SFS+P+ +LS +GYP  +  Q  F   S N + K + ++
Sbjct: 168 YEMLSFSEPSYWLSQLGYPVTRYFQNKFVVDSCNQMLKAVGSN 210

Dictyostelium discoideum (taxid: 44689)

>sp|Q9RST8|Y2035_DEIRA UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_2035 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 51  GLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFV---DPKTPI-QNGVKFC 106
           G + D       RV VG G   +E+ K AL+  + F  +W      +  TP+ + G    
Sbjct: 35  GRTPDWARSGRHRVRVGEGEACWERAKAALRGGQMF-QDWVLRPHGEASTPLSRQGATVV 93

Query: 107 VCVKEFLPW--VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDN 164
           + V+ F PW      L  +  N  +        +GFG GTL GHL++ GEERF +E D  
Sbjct: 94  LLVRHFGPWGRRKWGLYSLMTNRVLYLVDEPDRYGFGYGTLPGHLVR-GEERFLLERDAG 152

Query: 165 NQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQ 199
             VW+++ +FS+ A   S    P V   Q+  A  
Sbjct: 153 GAVWFDLTTFSRAALPFSRFAQPLVGAAQRRGARH 187

Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) (taxid: 243230)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
351727507	207	uncharacterized protein LOC100527004 [Gl	0.971	0.990	0.752	2e-91
357517863	232	hypothetical protein MTR_8g074720 [Medic	0.995	0.905	0.710	2e-89
217073422	207	unknown [Medicago truncatula] gi|3885012	0.971	0.990	0.723	3e-88
449434104	208	PREDICTED: UPF0548 protein At2g17695-lik	0.971	0.985	0.719	8e-86
255561315	205	conserved hypothetical protein [Ricinus	0.971	1.0	0.733	1e-85
224133942	202	predicted protein [Populus trichocarpa]	0.957	1.0	0.737	6e-85
418731084	203	hypothetical protein [Solanum tuberosum]	0.962	1.0	0.721	1e-82
30680073	205	uncharacterized protein [Arabidopsis tha	0.971	1.0	0.674	1e-81
297836486	205	hypothetical protein ARALYDRAFT_480662 [	0.971	1.0	0.674	2e-81
297742205	229	unnamed protein product [Vitis vinifera]	0.966	0.890	0.687	4e-81

>gi|351727507|ref|NP_001237163.1| uncharacterized protein LOC100527004 [Glycine max] gi|255631350|gb|ACU16042.1| unknown [Glycine max]

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 155/206 (75%), Positives = 180/206 (87%), Gaps = 1/206 (0%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           M+FLSWGRP+PQ+QK CI+KSG FNYD KYKGATAK VA LK D+GLSKDGFLLN ARVL
Sbjct: 1   MLFLSWGRPSPQDQKTCINKSGTFNYDDKYKGATAKSVASLKADEGLSKDGFLLNEARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG+ET+EKGK+AL++WRHFGLNWAFVDPKTP+Q GVKFCVCVKEF PW+ +PLQ+VYV
Sbjct: 61  VGSGIETFEKGKSALRSWRHFGLNWAFVDPKTPVQQGVKFCVCVKEFFPWLMMPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIG 185
           NE+   K   ASFGFGSGTL GHLL AGEERFSIE+D+NNQVWYE++SFSKPA  LS +G
Sbjct: 121 NETGTAKYRTASFGFGSGTLHGHLL-AGEERFSIEIDENNQVWYEVLSFSKPASILSLVG 179

Query: 186 YPYVQLRQKYFAHQSVNAVKKHLTAS 211
           YPYV LRQKYFA++S  A+ KH+ +S
Sbjct: 180 YPYVMLRQKYFANESAKAMLKHINSS 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517863|ref|XP_003629220.1| hypothetical protein MTR_8g074720 [Medicago truncatula] gi|355523242|gb|AET03696.1| hypothetical protein MTR_8g074720 [Medicago truncatula]

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 150/211 (71%), Positives = 180/211 (85%), Gaps = 1/211 (0%)

Query: 2   MLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNH 61
           ++  MVFLSW RPT Q+QK CI+KSG  NYD KYKGA+AK ++ LKED+GL  DGFLLN+
Sbjct: 20  IIVRMVFLSWVRPTAQDQKNCINKSGTLNYDDKYKGASAKSLSSLKEDKGLPNDGFLLNN 79

Query: 62  ARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQ 121
           ARVLVGSG+ET+EKGK+AL++WRHFG+NWAFVDPKTP++ G KFCVCVKEFLPW+ +PLQ
Sbjct: 80  ARVLVGSGVETFEKGKSALRSWRHFGMNWAFVDPKTPVEQGAKFCVCVKEFLPWLMMPLQ 139

Query: 122 IVYVNESIRKKKTAASFGFGSGTLQGHLL-QAGEERFSIELDDNNQVWYEIVSFSKPADF 180
           +VYVNE+   K   ASFGFGSGTLQGHLL  AGEERFS+E+D+NNQVWYEI+SFSKPA  
Sbjct: 140 VVYVNETSTTKNRGASFGFGSGTLQGHLLVAAGEERFSVEIDENNQVWYEILSFSKPAHV 199

Query: 181 LSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS 211
           LSF+GYPYV LRQKYFAH+S   + KH+ +S
Sbjct: 200 LSFVGYPYVMLRQKYFAHESAKVMLKHINSS 230

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073422|gb|ACJ85070.1| unknown [Medicago truncatula] gi|388501276|gb|AFK38704.1| unknown [Medicago truncatula]

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 149/206 (72%), Positives = 178/206 (86%), Gaps = 1/206 (0%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSW RPT Q+QK CI+KSG  NYD KYKGA+AK ++ LKED+GL  DGFLLN+ARVL
Sbjct: 1   MVFLSWVRPTAQDQKNCINKSGTLNYDDKYKGASAKSLSSLKEDKGLPNDGFLLNNARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG+ET+EKGK+AL++WRHFG+NWAFVDPKTP++ G KFCVCVKEFLPW+ +PLQ+VYV
Sbjct: 61  VGSGVETFEKGKSALRSWRHFGMNWAFVDPKTPVEQGAKFCVCVKEFLPWLMMPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIG 185
           NE+   K   ASFGFGSGTLQGHLL AGEERFS+E+D+NNQVWYEI+SFSKPA  LSF+G
Sbjct: 121 NETSTTKNRGASFGFGSGTLQGHLL-AGEERFSVEIDENNQVWYEILSFSKPAHVLSFVG 179

Query: 186 YPYVQLRQKYFAHQSVNAVKKHLTAS 211
           YP+V LRQKYFAH+S   + KH+ +S
Sbjct: 180 YPHVMLRQKYFAHESAKVMLKHINSS 205

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434104|ref|XP_004134836.1| PREDICTED: UPF0548 protein At2g17695-like [Cucumis sativus] gi|449491283|ref|XP_004158849.1| PREDICTED: UPF0548 protein At2g17695-like [Cucumis sativus]

 Score =  322 bits (824), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 149/207 (71%), Positives = 175/207 (84%), Gaps = 2/207 (0%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQG-LSKDGFLLNHARV 64
           MVFL W RP+PQEQKACI+++G FNY++K++GATA P +CL+ED+G +S++GFLLNHAR+
Sbjct: 1   MVFLCWSRPSPQEQKACIERAGSFNYNSKFRGATANPSSCLQEDKGGISQEGFLLNHARI 60

Query: 65  LVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVY 124
           LVGSG+ TYEKGK AL+ WRHFGLNWAFVD  TP+  GVKFCVC KEFLPWV LPLQIVY
Sbjct: 61  LVGSGVGTYEKGKKALQNWRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVY 120

Query: 125 VNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFI 184
           VNE+    K    F FGSGTLQGHLL AGEERFSIE+D N+QVWYEI+SFSKPA  LSF+
Sbjct: 121 VNENRDTNKGRTCFSFGSGTLQGHLL-AGEERFSIEMDSNSQVWYEILSFSKPAHILSFL 179

Query: 185 GYPYVQLRQKYFAHQSVNAVKKHLTAS 211
            YPY+ LRQKYFAHQS NAVKK+LT +
Sbjct: 180 SYPYIILRQKYFAHQSTNAVKKYLTPT 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561315|ref|XP_002521668.1| conserved hypothetical protein [Ricinus communis] gi|223539059|gb|EEF40655.1| conserved hypothetical protein [Ricinus communis]

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 151/206 (73%), Positives = 175/206 (84%), Gaps = 1/206 (0%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSW RP+P++QK  + KS  FNYD KYKGATAKPV  LKED  L++DGF +NHARVL
Sbjct: 1   MVFLSWTRPSPRQQKDFLTKSSAFNYDPKYKGATAKPVTSLKEDSELTRDGFFVNHARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           +GSGL+T++KGK+AL+ WRHFGLNWAFVDPKT IQ+GVKFCVC KEFLPWV +PLQ++YV
Sbjct: 61  LGSGLDTFDKGKSALQNWRHFGLNWAFVDPKTAIQSGVKFCVCYKEFLPWVMMPLQMIYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIG 185
            ES   KK  ASF FG GTLQGHLL AGEERFSIE+D+NNQVWYEI+SFSKP  FLSFIG
Sbjct: 121 KESRNAKKGMASFCFGGGTLQGHLL-AGEERFSIEMDENNQVWYEILSFSKPDHFLSFIG 179

Query: 186 YPYVQLRQKYFAHQSVNAVKKHLTAS 211
           YPYV+LRQK FA+QS NAV +H+ AS
Sbjct: 180 YPYVKLRQKDFANQSANAVLEHVNAS 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133942|ref|XP_002327717.1| predicted protein [Populus trichocarpa] gi|222836802|gb|EEE75195.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (816), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 152/206 (73%), Positives = 174/206 (84%), Gaps = 4/206 (1%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFL W +P+ QEQK C++KS  FNYD+KY+GAT+K  + L E   LSKDGFL+NHARVL
Sbjct: 1   MVFLCWAKPSLQEQKDCLNKSDGFNYDSKYRGATSKHASSLNE---LSKDGFLINHARVL 57

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG+ETYEKGK AL+ WRHFG +W FVD KTPI++GVKFCVCVKEFLPWV +PLQIVYV
Sbjct: 58  VGSGVETYEKGKLALENWRHFGFDWGFVDSKTPIRSGVKFCVCVKEFLPWVMMPLQIVYV 117

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIG 185
           NES   KK  ASF FG GTLQGHLL AGEERFSIE+D+ NQVWYE++SFSKPA FLSFIG
Sbjct: 118 NESRSSKKDMASFCFGGGTLQGHLL-AGEERFSIEMDEKNQVWYEVLSFSKPAHFLSFIG 176

Query: 186 YPYVQLRQKYFAHQSVNAVKKHLTAS 211
           YPYVQLRQK+FAHQS NAV KH++ S
Sbjct: 177 YPYVQLRQKFFAHQSSNAVVKHVSGS 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731084|gb|AFX67009.1| hypothetical protein [Solanum tuberosum]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 169/205 (82%), Gaps = 2/205 (0%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSW RP+P EQKACI+KSG FNYD +++GAT KP   LK+D+ L+KDGF +N ARVL
Sbjct: 1   MVFLSWTRPSPDEQKACINKSGSFNYDNRFRGATDKPAPLLKQDRELAKDGFSVNCARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG ET+EKGK AL+ WRHFGLNWAFVDPK PIQ+G KFCVCVKEF PW+ +PLQ+VYV
Sbjct: 61  VGSGRETFEKGKAALQNWRHFGLNWAFVDPKAPIQSGTKFCVCVKEFFPWLMMPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIG 185
            E+ +  K  ASF FGSGTLQGHLL AGEERFSI LD+N+ VWYEI+SFSKPA  LS  G
Sbjct: 121 TEN-KNSKMGASFSFGSGTLQGHLL-AGEERFSIALDENDLVWYEILSFSKPAHLLSLFG 178

Query: 186 YPYVQLRQKYFAHQSVNAVKKHLTA 210
           YPYV LRQKYFAH S  AVKKHL+A
Sbjct: 179 YPYVLLRQKYFAHHSGIAVKKHLSA 203

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680073|ref|NP_849965.1| uncharacterized protein [Arabidopsis thaliana] gi|186501122|ref|NP_001118341.1| uncharacterized protein [Arabidopsis thaliana] gi|334184277|ref|NP_001189543.1| uncharacterized protein [Arabidopsis thaliana] gi|75151174|sp|Q8GXB1.1|U548_ARATH RecName: Full=UPF0548 protein At2g17695 gi|26451700|dbj|BAC42945.1| unknown protein [Arabidopsis thaliana] gi|28973335|gb|AAO63992.1| unknown protein [Arabidopsis thaliana] gi|330251573|gb|AEC06667.1| uncharacterized protein [Arabidopsis thaliana] gi|330251574|gb|AEC06668.1| uncharacterized protein [Arabidopsis thaliana] gi|330251575|gb|AEC06669.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 171/206 (83%), Gaps = 1/206 (0%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSWGRP+ ++Q+  I+K+G FNYD KY+G +++ +A LKED  + KDGFL+NHARVL
Sbjct: 1   MVFLSWGRPSSEQQQQVINKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG E+YEKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct: 61  VGSGRESYEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIG 185
           +ES + +K  A FG+GSGTLQGHLL AGEE+FSIELD N +VWYEI SFSKPA FLSF+G
Sbjct: 121 DESRKSRKGPAHFGYGSGTLQGHLL-AGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLG 179

Query: 186 YPYVQLRQKYFAHQSVNAVKKHLTAS 211
           YPYV+LRQK+FA  S  AV KH+ AS
Sbjct: 180 YPYVKLRQKHFARHSSEAVLKHVNAS 205

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836486|ref|XP_002886125.1| hypothetical protein ARALYDRAFT_480662 [Arabidopsis lyrata subsp. lyrata] gi|297331965|gb|EFH62384.1| hypothetical protein ARALYDRAFT_480662 [Arabidopsis lyrata subsp. lyrata]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 171/206 (83%), Gaps = 1/206 (0%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSWGRP+ ++Q+  I+++G FNYD KY+G +++ +A LKED  + KDGFL+NHARVL
Sbjct: 1   MVFLSWGRPSSEQQQQVINRTGAFNYDNKYRGVSSRSIAKLKEDSEVEKDGFLINHARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG E++EKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct: 61  VGSGRESFEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVILPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIG 185
           +ES + +K  A FG+GSGTLQGHLL AGEERFSIELD N +VWYEI SFSKPA FLSF+G
Sbjct: 121 DESRKSRKGPAHFGYGSGTLQGHLL-AGEERFSIELDGNGEVWYEITSFSKPAHFLSFLG 179

Query: 186 YPYVQLRQKYFAHQSVNAVKKHLTAS 211
           YPYV+LRQK+FA  S  AV KHL AS
Sbjct: 180 YPYVKLRQKHFARHSSEAVLKHLKAS 205

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742205|emb|CBI34354.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 141/205 (68%), Positives = 166/205 (80%), Gaps = 1/205 (0%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFL W RP+PQ+QKAC++KSG  NYD+KYKG T KP + LKED+ LS+ GF +NHAR+L
Sbjct: 26  MVFLLWSRPSPQKQKACLEKSGGINYDSKYKGFTTKPASQLKEDKELSEAGFFINHARIL 85

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSGL+TYEKGK AL+ WRHF  +WAFVDP TPI+ GVKFCVC K FLPW  +PL++VYV
Sbjct: 86  VGSGLDTYEKGKVALENWRHFAFDWAFVDPTTPIRKGVKFCVCTKTFLPWTMMPLEVVYV 145

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIG 185
           +E     K  ASFGFGSGTL GHLL AGEERFSIELD+N+QVWYE++SFSKP + LS +G
Sbjct: 146 DEKKNANKAIASFGFGSGTLHGHLL-AGEERFSIELDENDQVWYEVLSFSKPGNILSVLG 204

Query: 186 YPYVQLRQKYFAHQSVNAVKKHLTA 210
           YPYVQ  QK FAH S NAV KHL+A
Sbjct: 205 YPYVQSMQKRFAHLSTNAVLKHLSA 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:1005716645	205	AT2G17695 "AT2G17695" [Arabido	0.971	1.0	0.674	2.7e-77
DICTYBASE|DDB_G0271742	216	DDB_G0271742 "UPF0548 family p	0.701	0.685	0.335	3.6e-18
UNIPROTKB|O06198	166	Rv2616 "Conserved protein" [My	0.625	0.795	0.304	2.9e-09

TAIR|locus:1005716645 AT2G17695 "AT2G17695" [Arabidopsis thaliana (taxid:3702)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 139/206 (67%), Positives = 171/206 (83%)

Query:     6 MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
             MVFLSWGRP+ ++Q+  I+K+G FNYD KY+G +++ +A LKED  + KDGFL+NHARVL
Sbjct:     1 MVFLSWGRPSSEQQQQVINKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVL 60

Query:    66 VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
             VGSG E+YEKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct:    61 VGSGRESYEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYV 120

Query:   126 NESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIG 185
             +ES + +K  A FG+GSGTLQGHLL AGEE+FSIELD N +VWYEI SFSKPA FLSF+G
Sbjct:   121 DESRKSRKGPAHFGYGSGTLQGHLL-AGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLG 179

Query:   186 YPYVQLRQKYFAHQSVNAVKKHLTAS 211
             YPYV+LRQK+FA  S  AV KH+ AS
Sbjct:   180 YPYVKLRQKHFARHSSEAVLKHVNAS 205

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

DICTYBASE|DDB_G0271742 DDB_G0271742 "UPF0548 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 53/158 (33%), Positives = 86/158 (54%)

Query:    57 FLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWA-FVDPKTPIQNGVKFCVCVKEFLPW 115
             F ++  ++ +G+G+E ++K   ALK W+HF L+W  F    TPI  G    +  K+   W
Sbjct:    50 FDVDQVKIQLGTGVECFQKAVAALKQWKHFDLDWVDFYFKNTPIAVGETVGILSKQVGFW 109

Query:   116 VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIE-------LDDNNQVW 168
             +    +I Y+ +   ++  +  FG+  GTL+ H+ + GEERF IE         D   V+
Sbjct:   110 ILSFARINYLYDG-DQEDGSIKFGYSYGTLKDHV-EKGEERFVIEWVRDPDGAPDKGAVY 167

Query:   169 YEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKK 206
             YE++SFS+P+ +LS +GYP  +  Q  F   S N + K
Sbjct:   168 YEMLSFSEPSYWLSQLGYPVTRYFQNKFVVDSCNQMLK 205

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|O06198 Rv2616 "Conserved protein" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 46/151 (30%), Positives = 77/151 (50%)

Query:    60 NHARVL--VGSGLETYEKGKTALKTW---RHFGLNWAFVDPKTPIQNGVKFCVCVKEFLP 114
             NH  V   +G+G + +E+   A+  W   R+ GL       +T + + V   V V   + 
Sbjct:    29 NHLDVSTQIGTGRQRFEQAADAVMHWGMQRNAGLR-VRASSETAVVSAV---VLVG--IA 82

Query:   115 WVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWY-EIVS 173
             ++  P ++VYV +    +      GFG GTL GH + +GEERF++  D    V + E++S
Sbjct:    83 FLRAPCRVVYVIDEPDVR------GFGYGTLPGHPV-SGEERFAVRCDPMTSVVFAEVLS 135

Query:   174 FSKPADFLSFIGYPYVQLRQKYFAHQSVNAV 204
             FS+PA + S    P   + Q++ A + + AV
Sbjct:   136 FSRPATWASKAAGPLGAVTQRFIAQRYLRAV 166


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      211       211   0.00081  112 3  11 22  0.49    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  194 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.10u 0.11s 20.21t   Elapsed:  00:00:01
  Total cpu time:  20.10u 0.11s 20.21t   Elapsed:  00:00:01
  Start:  Mon May 20 15:22:30 2013   End:  Mon May 20 15:22:31 2013

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GXB1	U548_ARATH	No assigned EC number	0.6747	0.9715	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
pfam09348	158	pfam09348, DUF1990, Domain of unknown function (DU	4e-48
COG4762	168	COG4762, COG4762, Uncharacterized protein conserve	1e-18

>gnl|CDD|220195 pfam09348, DUF1990, Domain of unknown function (DUF1990)

 Score =  154 bits (392), Expect = 4e-48
 Identities = 65/163 (39%), Positives = 92/163 (56%), Gaps = 15/163 (9%)

Query: 49  DQGLSKD----GFLLNHARVLVGSG-LETYEKGKTALKTWRHFGLNWAFV-DPKTPIQNG 102
           + G + D    G+  +H RV +GSG  E +E+   AL +WR F L    V  P TP + G
Sbjct: 4   EVGATADGRPPGYHHDHVRVELGSGREEVFERAAQALLSWRMFRLAGVRVIAPATPPEVG 63

Query: 103 VKFCVCVKEFLPWVTLPLQIVYV-NESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIEL 161
               +  +    WV  P ++VYV +E  R       FGF  GTL GH  + GEERF +E 
Sbjct: 64  RTVLLRARLGGLWVLAPCRVVYVVDEPRR-------FGFAYGTLPGHPER-GEERFLVER 115

Query: 162 DDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAV 204
           DD+ +VWYEI +FS+PA +LS +G P V+L Q+ FA + + A+
Sbjct: 116 DDDGRVWYEITAFSRPATWLSRLGGPLVRLAQRRFARRYLRAL 158

This family of proteins are functionally uncharacterized. Length = 158

>gnl|CDD|227103 COG4762, COG4762, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 78.8 bits (194), Expect = 1e-18
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 22/166 (13%)

Query: 49  DQGLSKDGFL---LNHARV--LVGSGLETYEKGKTALKTW---RHFGLNWAFVDPKTPIQ 100
           + G S  G L    NH  V   +G+G   +E    AL +W   R+ GL    V   +   
Sbjct: 15  EVGASATGRLPAGYNHLDVSLQLGTGEACFENAADALMSWGMHRNAGLR---VHASSSTV 71

Query: 101 NGVKFCVCVKEFLPW-VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSI 159
             V   + V     W +  P +++Y+ +           GFG GTL GH+++ GEERF I
Sbjct: 72  VLVSAVLLVG---IWFLRAPCRVLYLIDEPDV------RGFGYGTLPGHVVR-GEERFLI 121

Query: 160 ELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVK 205
           E D  + V +EI+SFS+PA + S +  P V + Q+  A + +  +K
Sbjct: 122 ERDAMDSVVFEILSFSRPALWASKLAGPLVAVVQRRIAQRYLRGLK 167

Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
PF09348	158	DUF1990: Domain of unknown function (DUF1990); Int	100.0
COG4762	168	Uncharacterized protein conserved in bacteria [Fun	100.0
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	87.77

>PF09348 DUF1990: Domain of unknown function (DUF1990); InterPro: IPR018960 This entry represents proteins that are functionally uncharacterised

Probab=100.00  E-value=1.8e-60  Score=392.94  Aligned_cols=157  Identities=36%  Similarity=0.627  Sum_probs=150.3

Q ss_pred             CCCCCCCCcccCCccccccCCCCCCCCceeeeeEEEecCchhHHHHHHHHHhcccccCceeeEe-cCCCCCCCCcEEEEE
Q 028245           30 NYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFV-DPKTPIQNGVKFCVC  108 (211)
Q Consensus        30 tY~~~~vGaT~~~~~~~~~~~~~~p~Gy~~~~~~~~lG~G~~~F~~A~~aL~~W~~~~~~g~~V-~~~~p~~~G~~v~v~  108 (211)
                      ||++  ||||+.         +.+|+||+|++++++||+|+++|++|+++|++|+||+.+|++| .+++|+.+|++|+++
T Consensus         1 tY~e--vgat~~---------~~~p~Gy~~~~~~~~lG~G~~~f~~A~~al~~W~~~~~~g~~v~~~~~~~~~G~~v~l~   69 (158)
T PF09348_consen    1 TYPE--VGATRQ---------GELPAGYRHVRRRVRLGSGEAVFERAAAALLSWRMHRRAGVRVRASDPPAAPGRTVVLR   69 (158)
T ss_pred             Cccc--ccccCC---------CCCCCCceEEEEEEEccCCchHHHHHHHHHhccCCCCCcEEEEECCCCccCCCCEEEEE
Confidence            8999  999983         4479999999999999999999999999999999999999999 566788999999999


Q ss_pred             eeeccceeeeceEEEEEeecccccCCcceEEEEeecCCCCcccceeEEEEEEEcCCCeEEEEEEEEecCCchhhhhhhhh
Q 028245          109 VKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPY  188 (211)
Q Consensus       109 ~~~~~~~~~~PcRVV~v~de~~~~~~~~r~GFaYGTLpGHpe~~GEE~F~Ve~~~dg~V~~~I~AFSRPa~~~~rlg~P~  188 (211)
                      .+.+++|+.+|||||||+||      ++++||+||||||||| +|||+|.||+|+||+|||+|+|||||++|++||++|+
T Consensus        70 ~~~~~~~~~~p~RVv~v~de------~~r~GF~ygTL~GHpe-~GEE~F~V~~~~dg~V~~~I~afSRP~~~~~rl~~P~  142 (158)
T PF09348_consen   70 AGVGPLWIRAPCRVVYVVDE------PDRFGFAYGTLPGHPE-RGEERFSVERDDDGSVWFEIRAFSRPASWLARLGYPV  142 (158)
T ss_pred             eeccceEEEeeEEEEEEEcC------CceEEEEEEeCCCChh-hcEEEEEEEECCCCeEEEEEEEEecccchHHHhhhHH
Confidence            99888999999999999995      6899999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 028245          189 VQLRQKYFAHQSVNAV  204 (211)
Q Consensus       189 ~r~~Qr~~~rry~~al  204 (211)
                      ++++|++|+++|++||
T Consensus       143 ~r~~Q~~~~rry~~am  158 (158)
T PF09348_consen  143 ARRAQRRFARRYLRAM  158 (158)
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            9999999999999997

>COG4762 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=5.9e-51  Score=331.73  Aligned_cols=159  Identities=30%  Similarity=0.460  Sum_probs=148.7

Q ss_pred             cCCCCCCCCCCCcccCCccccccCCCCCCCCceeeeeEEEecCchhHHHHHHHHHhcccccCceeeEecCCCCCCCCcEE
Q 028245           26 SGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKF  105 (211)
Q Consensus        26 ~~~~tY~~~~vGaT~~~~~~~~~~~~~~p~Gy~~~~~~~~lG~G~~~F~~A~~aL~~W~~~~~~g~~V~~~~p~~~G~~v  105 (211)
                      +.+++|||  +|++.         .+.+|+||+|.+++.+||.|++||++|++||++|+||+..|++|..++++.+++.+
T Consensus         8 e~~~~~~e--~g~s~---------~gr~p~g~~~~~~~l~lG~GeacfenA~~aL~sw~~hr~aglrvh~s~s~vv~~~~   76 (168)
T COG4762           8 ELPLTYPE--VGASA---------TGRLPAGYNHLDVSLQLGTGEACFENAADALMSWGMHRNAGLRVHASSSTVVLVSA   76 (168)
T ss_pred             hcCCCccc--ccccc---------cCcCCccccceeEEEEecccHHHHHHHHHHHhcccccccccEEeeccCCceeeeee
Confidence            67899999  99997         36799999999999999999999999999999999999999999999988888666


Q ss_pred             EEEeeeccce-eeeceEEEEEeecccccCCcceEEEEeecCCCCcccceeEEEEEEEcCCCeEEEEEEEEecCCchhhhh
Q 028245          106 CVCVKEFLPW-VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFI  184 (211)
Q Consensus       106 ~v~~~~~~~~-~~~PcRVV~v~de~~~~~~~~r~GFaYGTLpGHpe~~GEE~F~Ve~~~dg~V~~~I~AFSRPa~~~~rl  184 (211)
                      ++..   ++| +++||||+|++||      ++++||+|||||||++ +|||+|.||+|++|+|||+|.+|||||.|++++
T Consensus        77 vllv---g~w~~r~~cRVL~l~d~------~~~~gf~yGTL~ghv~-rgeErflierda~d~V~~~i~sfsr~Al~~skl  146 (168)
T COG4762          77 VLLV---GIWFLRAPCRVLYLIDE------PDVRGFGYGTLPGHVV-RGEERFLIERDAMDSVVFEILSFSRPALWASKL  146 (168)
T ss_pred             eeee---eeeeeecccEEEEEecC------CceeEEeecccCCccc-cchhheeEEecCCCcEEEEeeccccchhhhhhh
Confidence            5545   466 8999999999995      7999999999999999 999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHH
Q 028245          185 GYPYVQLRQKYFAHQSVNAVK  205 (211)
Q Consensus       185 g~P~~r~~Qr~~~rry~~al~  205 (211)
                      +.|+++.+||+.+++|++.|+
T Consensus       147 a~plv~~vqrr~aq~Ylrgl~  167 (168)
T COG4762         147 AGPLVAVVQRRIAQRYLRGLK  167 (168)
T ss_pred             hhhHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999885

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=87.77  E-value=9.5  Score=28.37  Aligned_cols=81  Identities=11%  Similarity=0.147  Sum_probs=55.1

Q ss_pred             eeceEEEEEeecccccCCcceEEEEeecCCCCcccceeEEEEEEEcCCCeEEEEEEEEecCCchhhhhhhhhHHHHHHHH
Q 028245          117 TLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYF  196 (211)
Q Consensus       117 ~~PcRVV~v~de~~~~~~~~r~GFaYGTLpGHpe~~GEE~F~Ve~~~dg~V~~~I~AFSRPa~~~~rlg~P~~r~~Qr~~  196 (211)
                      ..-++|+...+      ++..+.|.-.  +.... .+.-+|.++-.++| ..++....-+| .+...+..|+.+..-+..
T Consensus        58 ~~~~~i~~~~~------~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~g-t~v~~~~~~~~-~~~~~~~~~~~~~~~~~~  126 (139)
T PF10604_consen   58 TVREEITEYDP------EPRRITWRFV--PSGFT-NGTGRWRFEPVGDG-TRVTWTVEFEP-GLPGWLAGPLLRPAVKRI  126 (139)
T ss_dssp             EEEEEEEEEET------TTTEEEEEEE--SSSSC-EEEEEEEEEEETTT-EEEEEEEEEEE-SCTTSCHHHHHHHHHHHH
T ss_pred             ceeEEEEEecC------CCcEEEEEEE--eccee-EEEEEEEEEEcCCC-EEEEEEEEEEE-eccchhhHHHHHHHHHHH
Confidence            35567776665      2467776664  33334 57888999988888 55666555555 445666778787777888


Q ss_pred             HHHHHHHHHHHh
Q 028245          197 AHQSVNAVKKHL  208 (211)
Q Consensus       197 ~rry~~al~~~v  208 (211)
                      .++.++.|++.+
T Consensus       127 ~~~~l~~l~~~~  138 (139)
T PF10604_consen  127 VREALENLKRAA  138 (139)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhccc
Confidence            888899888875

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
3cnr_A	117	Type IV fimbriae assembly protein; PILZ, xanthomon	84.79

>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A

Probab=84.79  E-value=2.7  Score=32.01  Aligned_cols=43  Identities=7%  Similarity=0.010  Sum_probs=34.0

Q ss_pred             cCceeeEecCCCCCCCCcEEEEEeeeccc--eeeeceEEEEEeec
Q 028245           86 FGLNWAFVDPKTPIQNGVKFCVCVKEFLP--WVTLPLQIVYVNES  128 (211)
Q Consensus        86 ~~~~g~~V~~~~p~~~G~~v~v~~~~~~~--~~~~PcRVV~v~de  128 (211)
                      ...+|++|..+.|..+|+.|.+.+.....  .+....+|+|+...
T Consensus        29 is~GGlFI~T~~~~~~G~~V~l~l~Lp~~~~~i~~~GkVvWi~p~   73 (117)
T 3cnr_A           29 VKGGGIFVPTPKRYMLGDEVFLLLTLPDSSERLPVAGKVIWTTPA   73 (117)
T ss_dssp             BTTCEEEEECCSCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC
T ss_pred             cCCCeEEEeeCCccCCCCEEEEEEEcCCCCceEEEEEEEEEecCC
Confidence            55688999999999999999998763332  35677899999864

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	83.13

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=83.13  E-value=4.8  Score=26.94  Aligned_cols=73  Identities=18%  Similarity=0.167  Sum_probs=53.0

Q ss_pred             eEEEEeecCCCCcccceeEEEEEEEcCCCeEEEEEEEEecCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 028245          137 SFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS  211 (211)
Q Consensus       137 r~GFaYGTLpGHpe~~GEE~F~Ve~~~dg~V~~~I~AFSRPa~~~~rlg~P~~r~~Qr~~~rry~~al~~~v~~~  211 (211)
                      ..-+.-..-++... .++-.|.++-+++|. ..++..--.+..++.+++.++++..-++.....++.|++.++++
T Consensus        75 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~gt-~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~~A  147 (147)
T d2ns9a1          75 ATVKGSGRGAGSTL-DFTLRFAVEPSGGGS-RVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGEA  147 (147)
T ss_dssp             EEEEEEEECSSEEE-EEEEEEEEEEETTEE-EEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             eeEEEeeeccccce-eeEEEEEEEecCCCc-EEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33444455566677 888899999877763 34444444455678999999888877888899999999988764