Citrus Sinensis ID: 028260

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MSSKSICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccccccccccHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHccccEEEcccccccHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHHHHcccccEEEccccccccccccccccEEEEcccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccEEccEEHHHHHHHHHcccccccEEEEEEccHHHHHHHHccccEEEEcccccccHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHHHHHccccHEEEEEccccHHHHcccccEEEEEcccccEEEEEcccccccc
Coil and Loop (DISEMBL)
mssksicspsesssstksWIVHGIVAGAAIAVAVGARAylgrsknfrsRVVGIiparfassrfegkplvnilgkpmiqrTWERSKLATTLDHLVVATDDEKIAECCQQFGadvimtsescrngTERCNEALQKLEKKYDIVVNiqgdepliepeIIDGVVKALQAAPDAVFSTAVtslkpedafdpnrvkcvvdnhgyaiyfsrglipynk
Flexible Loop (DISEMBL)
mssksicspsesssstkSWIVHGIVAGAAIAVAVGARAYlgrsknfrsrVVGIIparfassrfegkplvnilgkpmiqRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTslkpedafdpnrvKCVVDNHGYaiyfsrglipynk
Low Complexity Region (SEG)
MssksicspsesssstksWivhgivagaaiavavgaraYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK
Disordered region (IsUnstruct)
******************WIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIP***
Disordered Region (DISOPRED)
*******************IVHGIVAGAAIAVAV***********FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN*
Disordered Region (DISEMBL)
*****************SWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK
Disordered Region (DISPRO)
**************STKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK
Transmembrane Helix (TMHMM)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSKSICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q9C920	290	3-deoxy-manno-octulosonat	yes	no	0.924	0.672	0.897	6e-96
Q9PKL1	254	3-deoxy-manno-octulosonat	yes	no	0.772	0.641	0.5	2e-39
P0CD75	254	3-deoxy-manno-octulosonat	yes	no	0.772	0.641	0.487	3e-39
Q3KMI0	254	3-deoxy-manno-octulosonat	yes	no	0.772	0.641	0.487	3e-39
B0BBG2	254	3-deoxy-manno-octulosonat	yes	no	0.772	0.641	0.487	6e-39
B0B9T2	254	3-deoxy-manno-octulosonat	yes	no	0.772	0.641	0.487	6e-39
Q254V8	254	3-deoxy-manno-octulosonat	yes	no	0.777	0.645	0.460	3e-38
B2RLM4	254	3-deoxy-manno-octulosonat	yes	no	0.753	0.625	0.481	2e-37
A6L9D4	251	3-deoxy-manno-octulosonat	yes	no	0.748	0.629	0.469	9e-37
Q7MTW6	254	3-deoxy-manno-octulosonat	yes	no	0.753	0.625	0.475	1e-36

>sp|Q9C920|KDSB_ARATH 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial OS=Arabidopsis thaliana GN=KDSB PE=1 SV=1

 Score =  349 bits (896), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 175/195 (89%), Positives = 185/195 (94%)

Query: 17  KSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPM 76
           K+WIV+GI+AG AIA A+GARAYLGRSK FRSRVVGIIPAR+ASSRFEGKPLV ILGKPM
Sbjct: 12  KTWIVNGILAGTAIAAAIGARAYLGRSKKFRSRVVGIIPARYASSRFEGKPLVQILGKPM 71

Query: 77  IQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK 136
           IQRTWERSKLATTLDH+VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEK
Sbjct: 72  IQRTWERSKLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEK 131

Query: 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH 196
           KYD+VVNIQGDEPLIEPEIIDGVVKALQ  PDAVFSTAVTSLKPED  DPNRVKCVVDN 
Sbjct: 132 KYDVVVNIQGDEPLIEPEIIDGVVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNR 191

Query: 197 GYAIYFSRGLIPYNK 211
           GYAIYFSRGLIPYNK
Sbjct: 192 GYAIYFSRGLIPYNK 206

Catalyzes the production of the sugar nucleotide CMP-3-deoxy-D-manno-octulosonate (CMP-KDO). CTP is the preferred nucleotide donor, but it can partially be replaced with UTP. Activates KDO during the biosynthesis of rhamnogalacturonan II (RG-II), a structurally complex pectic polysaccharide of the primary cell wall. RG-II is essential for the cell wall integrity of rapidly growing tissues and pollen tube growth and elongation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 3EC: 8

>sp|Q9PKL1|KDSB_CHLMU 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=kdsB PE=3 SV=2

 Score =  161 bits (408), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 113/164 (68%), Gaps = 1/164 (0%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ VGI+PAR+ SSRF GKPL  ILGK +IQR++E +  + +LD +VVATDD++I +   
Sbjct: 7   SKRVGILPARWGSSRFPGKPLAKILGKTLIQRSYENALTSRSLDCVVVATDDQRIFDHVV 66

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           +FG   +MT ESC NGTER  EA+ +   + +IVVNIQGDEP + P IIDG+V+ L+  P
Sbjct: 67  EFGGLCVMTCESCANGTERVEEAVSQHFPQAEIVVNIQGDEPCLSPSIIDGLVEMLEGNP 126

Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 210
               +T VT ++ P+     ++VKCV D  G A+YFSR +IP N
Sbjct: 127 AIDIATPVTETVDPDAILTNHKVKCVFDKTGRALYFSRSVIPNN 170

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia muridarum (strain MoPn / Nigg) (taxid: 243161)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|P0CD75|KDSB_CHLTR 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=kdsB PE=3 SV=1

 Score =  161 bits (407), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 112/164 (68%), Gaps = 1/164 (0%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   
Sbjct: 7   SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P
Sbjct: 67  EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126

Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 210
            A   T+VT +  PE     ++VKCV D +G A+YFSR  IP+N
Sbjct: 127 AADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHN 170

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia trachomatis (strain D/UW-3/Cx) (taxid: 272561)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|Q3KMI0|KDSB_CHLTA 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) GN=kdsB PE=3 SV=1

 Score =  161 bits (407), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 112/164 (68%), Gaps = 1/164 (0%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   
Sbjct: 7   SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P
Sbjct: 67  EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126

Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 210
            A   T+VT +  PE     ++VKCV D +G A+YFSR  IP+N
Sbjct: 127 AADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHN 170

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) (taxid: 315277)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|B0BBG2|KDSB_CHLTB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) GN=kdsB PE=3 SV=1

 Score =  160 bits (405), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 1/164 (0%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   
Sbjct: 7   SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P
Sbjct: 67  EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126

Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 210
            A   T VT +  PE     ++VKCV D +G A+YFSR  IP+N
Sbjct: 127 AADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHN 170

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) (taxid: 471473)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|B0B9T2|KDSB_CHLT2 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) GN=kdsB PE=3 SV=1

 Score =  160 bits (405), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 1/164 (0%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   
Sbjct: 7   SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P
Sbjct: 67  EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126

Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 210
            A   T VT +  PE     ++VKCV D +G A+YFSR  IP+N
Sbjct: 127 AADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHN 170

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) (taxid: 471472)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|Q254V8|KDSB_CHLFF 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=kdsB PE=3 SV=1

 Score =  158 bits (399), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 110/165 (66%), Gaps = 1/165 (0%)

Query: 46  FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC 105
           F S+ VG++PAR+ S RF GKPL NILGK +IQRT+E    +TTLD +VVATD+++I + 
Sbjct: 6   FASKKVGVLPARWGSVRFTGKPLANILGKSLIQRTYENISQSTTLDKVVVATDNQRIMDH 65

Query: 106 CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165
              FG D +MTS  C NGTER  EA+ +   + +I+VNIQGDEP ++  ++D +V+ L+ 
Sbjct: 66  VLDFGGDCVMTSPECANGTERTAEAISRYFPEAEIIVNIQGDEPCLQHTVVDTLVRKLEE 125

Query: 166 APD-AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 209
           +P+  V + A  +    +     +VKCV D +G A+YFSR  IP+
Sbjct: 126 SPEIQVVTPAAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPH 170

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydophila felis (strain Fe/C-56) (taxid: 264202)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|B2RLM4|KDSB_PORG3 3-deoxy-manno-octulosonate cytidylyltransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=kdsB PE=3 SV=1

 Score =  155 bits (391), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/166 (48%), Positives = 108/166 (65%), Gaps = 7/166 (4%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           + V+ IIPARFASSRF GKPL ++LGK MIQR  ER  +A  +   VVATDDE+I +  +
Sbjct: 3   TEVIAIIPARFASSRFPGKPLADMLGKSMIQRVHER--IAGVVPRAVVATDDERIRQAVE 60

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
            FG +V+MTS  C +GTERC EA  K+ +   IV+N+QGDEP I+ E ID ++ A    P
Sbjct: 61  DFGGEVVMTSPECSSGTERCREAFDKVGRGEKIVLNLQGDEPFIQKEQIDLLISAFD-KP 119

Query: 168 DAVFSTAVTSLKPEDAFD----PNRVKCVVDNHGYAIYFSRGLIPY 209
           +   +T       + +F+    PN  K V+D+ GYA+YFSR +IPY
Sbjct: 120 ETDIATLAEVFSSDASFERLNNPNSPKIVLDHGGYALYFSRSVIPY 165

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) (taxid: 431947)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|A6L9D4|KDSB_PARD8 3-deoxy-manno-octulosonate cytidylyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=kdsB PE=3 SV=1

 Score =  153 bits (386), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 108/166 (65%), Gaps = 8/166 (4%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           + +GIIPAR+AS+RF GKPL ++ GKPMIQR +E+ K    LD + VATDD +I    + 
Sbjct: 3   KFIGIIPARYASTRFPGKPLADMNGKPMIQRVYEQVK--DVLDSVCVATDDIRIENAVKA 60

Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
           FG  V+MTS+  R+GT+RC EA QK+ + YD++VNIQGDEP I PE I   +K   A  +
Sbjct: 61  FGGQVVMTSDQHRSGTDRCYEAYQKIGEGYDVIVNIQGDEPFIHPEQIQ-TIKTCFADAN 119

Query: 169 AVFSTAVTSLKPED-----AFDPNRVKCVVDNHGYAIYFSRGLIPY 209
              +T V   + +D      F+PN  K V++ +  A+YFSR +IPY
Sbjct: 120 TQIATLVKPFRSDDDFESSLFNPNSPKVVLNKNNEAMYFSRSIIPY 165

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) (taxid: 435591)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|Q7MTW6|KDSB_PORGI 3-deoxy-manno-octulosonate cytidylyltransferase OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN=kdsB PE=3 SV=1

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 107/166 (64%), Gaps = 7/166 (4%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           + V+ IIPARFASSRF GKPL ++LGK MIQR  ER  +   +   VVATDDE+I +  +
Sbjct: 3   TEVIAIIPARFASSRFPGKPLADMLGKSMIQRVHER--IVGVVPRAVVATDDERIRQAVE 60

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
            FG +V+MTS  C +GTERC EA  K+ +   IV+N+QGDEP I+ E ID ++ A    P
Sbjct: 61  DFGGEVVMTSPECSSGTERCREAFDKVGRGEKIVLNLQGDEPFIQKEQIDLLISAFD-KP 119

Query: 168 DAVFSTAVTSLKPEDAFD----PNRVKCVVDNHGYAIYFSRGLIPY 209
           +   +T       + +F+    PN  K V+D+ GYA+YFSR +IPY
Sbjct: 120 ETDIATLAEVFSSDVSFERLNNPNSPKIVLDHGGYALYFSRSVIPY 165

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Porphyromonas gingivalis (strain ATCC BAA-308 / W83) (taxid: 242619)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
255552475	294	cmp-2-keto-3-deoctulosonate (cmp-kdo) cy	0.914	0.656	0.896	1e-100
449431840	297	PREDICTED: 3-deoxy-manno-octulosonate cy	0.933	0.663	0.883	1e-100
255587342	290	cmp-2-keto-3-deoctulosonate (cmp-kdo) cy	0.914	0.665	0.875	2e-97
224128153	288	predicted protein [Populus trichocarpa]	0.924	0.677	0.902	3e-95
30695393	290	3-deoxy-manno-octulosonate cytidylyltran	0.924	0.672	0.897	3e-94
224114948	293	predicted protein [Populus trichocarpa]	0.928	0.668	0.897	1e-93
356514754	305	PREDICTED: 3-deoxy-manno-octulosonate cy	0.938	0.649	0.888	7e-93
297853072	293	cytidylyltransferase family [Arabidopsis	0.924	0.665	0.892	1e-92
225461429	297	PREDICTED: 3-deoxy-manno-octulosonate cy	0.933	0.663	0.869	1e-92
356543296	306	PREDICTED: 3-deoxy-manno-octulosonate cy	0.933	0.643	0.888	2e-92

>gi|255552475|ref|XP_002517281.1| cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis] gi|223543544|gb|EEF45074.1| cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/193 (89%), Positives = 184/193 (95%)

Query: 19  WIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQ 78
           WIVH IVAGAAIAV +GARAYL RS+ FRSRV+GIIPARFASSRF+GKPLV ILGKPMIQ
Sbjct: 18  WIVHSIVAGAAIAVGIGARAYLSRSRKFRSRVIGIIPARFASSRFQGKPLVQILGKPMIQ 77

Query: 79  RTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKY 138
           RTWER+KLATTLDH++VATDDEKIAECC+ FGADVIMTSESCRNGTERCNEA+ KLEKKY
Sbjct: 78  RTWERAKLATTLDHIIVATDDEKIAECCRGFGADVIMTSESCRNGTERCNEAIGKLEKKY 137

Query: 139 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198
           D+VVNIQGDEPLIEPEIIDG+VKALQ APDAVFSTAVTSLKPEDAFDPNRVKCVVDN GY
Sbjct: 138 DVVVNIQGDEPLIEPEIIDGIVKALQEAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNQGY 197

Query: 199 AIYFSRGLIPYNK 211
           AIYFSRGLIPYNK
Sbjct: 198 AIYFSRGLIPYNK 210

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431840|ref|XP_004133708.1| PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase-like [Cucumis sativus]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/197 (88%), Positives = 186/197 (94%)

Query: 15  STKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGK 74
           S K+WIVHGIVAG AI  A GAR+YLGRSK FRSRVVGIIPARFASSRFEGKPLV ILGK
Sbjct: 17  SAKAWIVHGIVAGIAIGAAFGARSYLGRSKKFRSRVVGIIPARFASSRFEGKPLVEILGK 76

Query: 75  PMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL 134
           PMIQRTWER+K+ATTLD +VVATDD +IA+CC+ FGADV+MTSESCRNGTERCNEALQKL
Sbjct: 77  PMIQRTWERAKMATTLDCVVVATDDARIAQCCKGFGADVVMTSESCRNGTERCNEALQKL 136

Query: 135 EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD 194
           EKKYDIVVNIQGDEPLIEPEIIDG+VKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD
Sbjct: 137 EKKYDIVVNIQGDEPLIEPEIIDGIVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD 196

Query: 195 NHGYAIYFSRGLIPYNK 211
           + GYAIYFSRGLIP+NK
Sbjct: 197 SRGYAIYFSRGLIPFNK 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587342|ref|XP_002534236.1| cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis] gi|223525656|gb|EEF28143.1| cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 169/193 (87%), Positives = 182/193 (94%)

Query: 19  WIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQ 78
           WIVH IVAGAAIAV VGA AYLGR + FR RV+GIIPARF SSRF+GKPLV+ILGKPMIQ
Sbjct: 14  WIVHSIVAGAAIAVGVGAGAYLGRFRKFRRRVIGIIPARFDSSRFQGKPLVHILGKPMIQ 73

Query: 79  RTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKY 138
           RTWER+KLATTLDH++VATD+EKIAECC+ FGADVIMTSESCRNGTERCNEAL KLEKKY
Sbjct: 74  RTWERAKLATTLDHIIVATDNEKIAECCRGFGADVIMTSESCRNGTERCNEALGKLEKKY 133

Query: 139 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198
           D+VVNIQGDEPLIEP IIDG+VKALQAAP+AVFSTAVTSLKPEDAFDPNRVKCVVDN GY
Sbjct: 134 DVVVNIQGDEPLIEPVIIDGIVKALQAAPNAVFSTAVTSLKPEDAFDPNRVKCVVDNQGY 193

Query: 199 AIYFSRGLIPYNK 211
           AIYFSRGL+PYNK
Sbjct: 194 AIYFSRGLVPYNK 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128153|ref|XP_002329094.1| predicted protein [Populus trichocarpa] gi|222869763|gb|EEF06894.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 176/195 (90%), Positives = 187/195 (95%)

Query: 17  KSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPM 76
           K WIVH IVAGAAIA A+GA AYLGR + FRSRVVGIIPAR+ASSRFEGKPLVNILGKPM
Sbjct: 10  KFWIVHSIVAGAAIAAAIGAGAYLGRYRKFRSRVVGIIPARYASSRFEGKPLVNILGKPM 69

Query: 77  IQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK 136
           IQRTWER+KLA+TLDH+VVATDDEKIAECC+ FGADVIMTSESCRNGTERCNEALQKL+K
Sbjct: 70  IQRTWERAKLASTLDHIVVATDDEKIAECCRGFGADVIMTSESCRNGTERCNEALQKLDK 129

Query: 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH 196
           KYD+VVNIQGDEPLIEPEIID +VKALQAAPDAVFSTAVT+LKPEDAFDPNRVKCVVDNH
Sbjct: 130 KYDVVVNIQGDEPLIEPEIIDRIVKALQAAPDAVFSTAVTALKPEDAFDPNRVKCVVDNH 189

Query: 197 GYAIYFSRGLIPYNK 211
           GYAIYFSRGLIPYNK
Sbjct: 190 GYAIYFSRGLIPYNK 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30695393|ref|NP_175708.2| 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [Arabidopsis thaliana] gi|12324630|gb|AAG52266.1|AC019018_3 putative deoxyoctulonosic acid synthetase; 116195-114393 [Arabidopsis thaliana] gi|22213935|emb|CAD43603.1| putative CMP-KDO synthetase [Arabidopsis thaliana] gi|222424524|dbj|BAH20217.1| AT1G53000 [Arabidopsis thaliana] gi|332194754|gb|AEE32875.1| 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [Arabidopsis thaliana]

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 175/195 (89%), Positives = 185/195 (94%)

Query: 17  KSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPM 76
           K+WIV+GI+AG AIA A+GARAYLGRSK FRSRVVGIIPAR+ASSRFEGKPLV ILGKPM
Sbjct: 12  KTWIVNGILAGTAIAAAIGARAYLGRSKKFRSRVVGIIPARYASSRFEGKPLVQILGKPM 71

Query: 77  IQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK 136
           IQRTWERSKLATTLDH+VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEK
Sbjct: 72  IQRTWERSKLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEK 131

Query: 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH 196
           KYD+VVNIQGDEPLIEPEIIDGVVKALQ  PDAVFSTAVTSLKPED  DPNRVKCVVDN 
Sbjct: 132 KYDVVVNIQGDEPLIEPEIIDGVVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNR 191

Query: 197 GYAIYFSRGLIPYNK 211
           GYAIYFSRGLIPYNK
Sbjct: 192 GYAIYFSRGLIPYNK 206

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114948|ref|XP_002316900.1| predicted protein [Populus trichocarpa] gi|222859965|gb|EEE97512.1| predicted protein [Populus trichocarpa]

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/196 (89%), Positives = 189/196 (96%)

Query: 16  TKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKP 75
           T+SWIVHGIVAGAAIA A+GA AYL R + FRS+VVGIIPAR+ASSRFEGKPLVNILGKP
Sbjct: 14  TRSWIVHGIVAGAAIAAAIGAGAYLVRYRKFRSQVVGIIPARYASSRFEGKPLVNILGKP 73

Query: 76  MIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE 135
           MIQRTWER+KLATTLDH+VVATDDEKIAECC+ FGADV+MTSESCRNGTERCNEALQKL+
Sbjct: 74  MIQRTWERAKLATTLDHIVVATDDEKIAECCRGFGADVVMTSESCRNGTERCNEALQKLD 133

Query: 136 KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN 195
           KKYD+VVNIQGDEPLIEPEIIDG+VK+LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN
Sbjct: 134 KKYDVVVNIQGDEPLIEPEIIDGIVKSLQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN 193

Query: 196 HGYAIYFSRGLIPYNK 211
            GYAIYFSRGLIPYNK
Sbjct: 194 QGYAIYFSRGLIPYNK 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514754|ref|XP_003526068.1| PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase-like [Glycine max]

 Score =  345 bits (885), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 176/198 (88%), Positives = 186/198 (93%)

Query: 14  SSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILG 73
           ++ K+WI+HGIVAG AIA AVGARAY+ R   FRSRVVGIIPARFASSRFEGKPLV ILG
Sbjct: 24  NTAKAWIIHGIVAGVAIAAAVGARAYMTRFSKFRSRVVGIIPARFASSRFEGKPLVQILG 83

Query: 74  KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQK 133
           KPMIQRTWER+KLA TLDH+VVATDDEKIA+CC+QFGADVIMTSESCRNGTERCNEALQK
Sbjct: 84  KPMIQRTWERAKLAATLDHVVVATDDEKIADCCRQFGADVIMTSESCRNGTERCNEALQK 143

Query: 134 LEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVV 193
           L KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA DPNRVKCVV
Sbjct: 144 LGKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAHDPNRVKCVV 203

Query: 194 DNHGYAIYFSRGLIPYNK 211
           DN GYAIYFSRGLIP+NK
Sbjct: 204 DNRGYAIYFSRGLIPFNK 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853072|ref|XP_002894417.1| cytidylyltransferase family [Arabidopsis lyrata subsp. lyrata] gi|297340259|gb|EFH70676.1| cytidylyltransferase family [Arabidopsis lyrata subsp. lyrata]

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 174/195 (89%), Positives = 185/195 (94%)

Query: 17  KSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPM 76
           K+WIVHGI+AGAAIA A+GA AYLGRS+ FRSRVVGIIPAR+ASSRFEGKPLV ILGKPM
Sbjct: 15  KTWIVHGILAGAAIAAAIGASAYLGRSRKFRSRVVGIIPARYASSRFEGKPLVQILGKPM 74

Query: 77  IQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK 136
           IQRTWERSKLATTLDH+VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KL+K
Sbjct: 75  IQRTWERSKLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALEKLDK 134

Query: 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH 196
           KYD+VVNIQGDEPLIEPEIIDGVVKALQ  PDAVFSTAVTSLKPED  DPNRVKCVVDN 
Sbjct: 135 KYDVVVNIQGDEPLIEPEIIDGVVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNR 194

Query: 197 GYAIYFSRGLIPYNK 211
           GYAIYFSRGLIPYNK
Sbjct: 195 GYAIYFSRGLIPYNK 209

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461429|ref|XP_002284913.1| PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase [Vitis vinifera] gi|302143017|emb|CBI20312.3| unnamed protein product [Vitis vinifera]

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/199 (86%), Positives = 188/199 (94%), Gaps = 2/199 (1%)

Query: 15  STKSWIVHGIVAGAAIAVAVGARAYL--GRSKNFRSRVVGIIPARFASSRFEGKPLVNIL 72
           +TK+WI+HGI+ GAA+AVA+GA AYL   RS  FRSRVVGIIPARFASSRF+GKPLV IL
Sbjct: 15  TTKAWIIHGILTGAAVAVALGAHAYLLLRRSGKFRSRVVGIIPARFASSRFQGKPLVQIL 74

Query: 73  GKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQ 132
           GKPMIQRTWER+KLATTLDH+VVATDD+KIA+CC+ FGADVIMTSESCRNGTERCNEALQ
Sbjct: 75  GKPMIQRTWERAKLATTLDHVVVATDDDKIADCCRGFGADVIMTSESCRNGTERCNEALQ 134

Query: 133 KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 192
           KLEK+YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED FDPNRVKC+
Sbjct: 135 KLEKQYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDGFDPNRVKCI 194

Query: 193 VDNHGYAIYFSRGLIPYNK 211
           VDN GYAIYFSRGLIP+NK
Sbjct: 195 VDNRGYAIYFSRGLIPFNK 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543296|ref|XP_003540098.1| PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase-like [Glycine max]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 175/197 (88%), Positives = 185/197 (93%)

Query: 15  STKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGK 74
           + K+WI+HGIVAG AIA AVGARAY+ R   FRSRVVGIIPARFASSRF+GKPLV ILGK
Sbjct: 26  TAKAWIIHGIVAGVAIAAAVGARAYMTRFSKFRSRVVGIIPARFASSRFQGKPLVQILGK 85

Query: 75  PMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL 134
           PMIQRTWER+KLA TLDH+VVATDDEKIA+CC+QFGADVIMTSESCRNGTERCNEALQKL
Sbjct: 86  PMIQRTWERAKLAATLDHIVVATDDEKIADCCRQFGADVIMTSESCRNGTERCNEALQKL 145

Query: 135 EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD 194
            KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA DPNRVKCVVD
Sbjct: 146 GKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAHDPNRVKCVVD 205

Query: 195 NHGYAIYFSRGLIPYNK 211
           N GYAIYFSRGLIP+NK
Sbjct: 206 NRGYAIYFSRGLIPFNK 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2037015	290	CKS "CMP-KDO synthetase" [Arab	0.819	0.596	0.919	1.9e-83
TIGR_CMR|SO_2478	245	SO_2478 "3-deoxy-D-manno-octul	0.748	0.644	0.453	7.7e-32
UNIPROTKB|Q9KQX2	252	kdsB "3-deoxy-manno-octulosona	0.744	0.623	0.465	2.6e-31
TIGR_CMR|GSU_1896	250	GSU_1896 "3-deoxy-D-manno-octu	0.748	0.632	0.447	2.6e-31
TIGR_CMR|VC_1875	252	VC_1875 "3-deoxy-manno-octulos	0.744	0.623	0.465	2.6e-31
UNIPROTKB|P04951	248	kdsB "3-deoxy-D-manno-octuloso	0.758	0.645	0.438	7.1e-29
TIGR_CMR|CPS_2128	280	CPS_2128 "3-deoxy-D-manno-octu	0.758	0.571	0.431	6.4e-28
TIGR_CMR|CBU_0479	249	CBU_0479 "3-deoxy-D-manno-octu	0.748	0.634	0.409	5.2e-26
TIGR_CMR|CJE_0904	239	CJE_0904 "3-deoxy-D-manno-octu	0.739	0.652	0.388	5.9e-25
TIGR_CMR|SPO_0038	266	SPO_0038 "3-deoxy-D-manno-octu	0.578	0.458	0.456	5.9e-25

TAIR|locus:2037015 CKS "CMP-KDO synthetase" [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 159/173 (91%), Positives = 165/173 (95%)

Query:    39 YLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD 98
             YLGRSK FRSRVVGIIPAR+ASSRFEGKPLV ILGKPMIQRTWERSKLATTLDH+VVATD
Sbjct:    34 YLGRSKKFRSRVVGIIPARYASSRFEGKPLVQILGKPMIQRTWERSKLATTLDHIVVATD 93

Query:    99 DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158
             DE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEKKYD+VVNIQGDEPLIEPEIIDG
Sbjct:    94 DERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEKKYDVVVNIQGDEPLIEPEIIDG 153

Query:   159 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
             VVKALQ  PDAVFSTAVTSLKPED  DPNRVKCVVDN GYAIYFSRGLIPYNK
Sbjct:   154 VVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNRGYAIYFSRGLIPYNK 206

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=IEA;IDA

GO:0009103 "lipopolysaccharide biosynthetic process" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009860 "pollen tube growth" evidence=IMP

GO:0033468 "CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process" evidence=IDA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TIGR_CMR|SO_2478 SO_2478 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 74/163 (45%), Positives = 101/163 (61%)

Query:    53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
             +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L ++ VATDDE+I    + FG  
Sbjct:     6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKSAVEGFGGK 65

Query:   113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
             V+MTS    +GT+R N+A+ +L  K  D+V+N+QGD+PLI+P  I+ V+   +  P   F
Sbjct:    66 VVMTSPDAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHPGE-F 124

Query:   172 STAVTS---LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
               A      +   +  DP  VK V DN  YA+YFSR  IP+ +
Sbjct:   125 EMATLGYEIVNKAELDDPMHVKMVFDNDYYALYFSRARIPFGR 167

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

UNIPROTKB|Q9KQX2 kdsB "3-deoxy-manno-octulosonate cytidylyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 75/161 (46%), Positives = 104/161 (64%)

Query:    53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
             +IPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDDE++ +  Q FG  
Sbjct:     6 VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGV 64

Query:   113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
             V MTS + ++GTER  E + K+    D IVVN+QGDEPLI P II  V   L AA  A  
Sbjct:    65 VCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNL-AACSAPM 123

Query:   172 STAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
             +T    ++ E + F+PN VK + D  GYA+YFSR  IP+++
Sbjct:   124 ATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDR 164

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

TIGR_CMR|GSU_1896 GSU_1896 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 72/161 (44%), Positives = 98/161 (60%)

Query:    50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
             +  IIPARFAS+RF GK L +I GKPM+Q  +ER+  A  +  +VVATDD++IA+  + F
Sbjct:     3 ITAIIPARFASTRFPGKALADIAGKPMVQHVYERTARARLVSEVVVATDDDRIAQAVRGF 62

Query:   110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
             G  V MTS     GT+R  E   ++    +I+VN+QGDEPLIEP +ID  +  L   P  
Sbjct:    63 GGRVEMTSRDHETGTDRLAEVASRIGA--EIIVNVQGDEPLIEPAMIDEAIAPLAENPAV 120

Query:   170 VFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPY 209
                T  + ++   D   PN VK V D  GYA+YFSR  +P+
Sbjct:   121 RMGTLKSRIRTLHDFLSPNVVKVVTDLEGYALYFSRSPLPF 161

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

TIGR_CMR|VC_1875 VC_1875 "3-deoxy-manno-octulosonate cytidylyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 75/161 (46%), Positives = 104/161 (64%)

Query:    53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
             +IPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDDE++ +  Q FG  
Sbjct:     6 VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGV 64

Query:   113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
             V MTS + ++GTER  E + K+    D IVVN+QGDEPLI P II  V   L AA  A  
Sbjct:    65 VCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNL-AACSAPM 123

Query:   172 STAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
             +T    ++ E + F+PN VK + D  GYA+YFSR  IP+++
Sbjct:   124 ATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDR 164

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

UNIPROTKB|P04951 kdsB "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Escherichia coli K-12 (taxid:83333)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 71/162 (43%), Positives = 100/162 (61%)

Query:    51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
             V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G
Sbjct:     4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAG 62

Query:   111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
              +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      
Sbjct:    63 GEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVG 122

Query:   170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
             + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++
Sbjct:   123 MATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 164

GO:0033468 "CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process" evidence=IEA

GO:0019294 "keto-3-deoxy-D-manno-octulosonic acid biosynthetic process" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|CPS_2128 CPS_2128 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 72/167 (43%), Positives = 104/167 (62%)

Query:    51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
             V +IPAR+ SSR  GK L +I GKPMIQ   E+++L+     ++VATD++++A     FG
Sbjct:    20 VVVIPARYQSSRLPGKVLADIDGKPMIQWVVEKAQLSGARQ-VIVATDNDEVAAVVNSFG 78

Query:   111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKAL----QA 165
             A+V  T    ++GTER  E ++K +   D I+VN+QGDEP I P+ I  V   L    Q+
Sbjct:    79 AEVCKTRADHQSGTERLAEVMEKYQFSDDEIIVNVQGDEPFIPPDNIAQVANNLANQQQS 138

Query:   166 APDAVFSTAVTSLKPED-AFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
             +  A  ST   ++   D AF+PN VK ++D  GYA+YFSR  IPY++
Sbjct:   139 SHVARMSTLAINIDSVDEAFNPNAVKVILDKDGYALYFSRATIPYDR 185

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

TIGR_CMR|CBU_0479 CBU_0479 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 66/161 (40%), Positives = 100/161 (62%)

Query:    53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
             IIPARF S+R  GK LV+I GKPMIQ  +E S + +  + +V+ATDD++I +  + FGA 
Sbjct:     6 IIPARFDSTRLPGKALVDIAGKPMIQHVYE-SAIKSGAEEVVIATDDKRIRQVAEDFGAV 64

Query:   113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
             V MTS   ++GTER  EA   L  + D I+V +QGDEPLI P+ I  + + L    +   
Sbjct:    65 VCMTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKV 124

Query:   172 STAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
             ++  T + + ++ F+P+  K V++   YA+YFS   IP+ +
Sbjct:   125 ASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGR 165

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0019294 "keto-3-deoxy-D-manno-octulosonic acid biosynthetic process" evidence=ISS

TIGR_CMR|CJE_0904 CJE_0904 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 63/162 (38%), Positives = 95/162 (58%)

Query:    53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
             IIPAR  SSRF  K L ++ G PM   T  R    +++D + +A DDEK+    +++G +
Sbjct:     3 IIPARLKSSRFHEKILCDVGGVPMFVATARR---VSSVDEVCIALDDEKVLSIAKEYGLN 59

Query:   113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPD--A 169
              ++TS++  +GT+R NEA +KL  K D I++N+Q DEP IE E +    +   +  D  A
Sbjct:    60 AVLTSKNHESGTDRINEACKKLSLKDDEIIINVQADEPFIECENLLKFKEFASSCLDKKA 119

Query:   170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
               ++    +  E+A D N VK + D  GYA+YFSR  IPY +
Sbjct:   120 FMASCYKKITQEEAMDSNLVKVLCDKEGYALYFSRAKIPYER 161

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

TIGR_CMR|SPO_0038 SPO_0038 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 58/127 (45%), Positives = 83/127 (65%)

Query:    54 IPARFASSRFEGKPLVNILGKP-----MIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
             IPAR+AS+R+ GKPLV++ G       +I+R+W  +   +  D +VVATDD++I    + 
Sbjct:     7 IPARYASTRYPGKPLVSLTGASGTEMTLIERSWRAAMAVSGADRVVVATDDDRIRAVAEG 66

Query:   109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
             FGA+V+MTS  C NGTERC EA   L   +DIVVN+QGD PL     ++ ++  L+AAP+
Sbjct:    67 FGAEVVMTSSDCVNGTERCAEAHAVLGGGFDIVVNLQGDAPLTPHWFVEDLIAGLRAAPE 126

Query:   169 AVFSTAV 175
             A  +T V
Sbjct:   127 ADIATPV 133

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C920	KDSB_ARATH	2, ., 7, ., 7, ., 3, 8	0.8974	0.9241	0.6724	yes	no
A0LE62	KDSB_SYNFM	2, ., 7, ., 7, ., 3, 8	0.5030	0.7535	0.636	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.691
3rd Layer	2.7.7.38	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
PLN02917	293	PLN02917, PLN02917, CMP-KDO synthetase	1e-155
cd02517	239	cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase ca	7e-98
PRK05450	245	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cyt	2e-86
PRK13368	238	PRK13368, PRK13368, 3-deoxy-manno-octulosonate cyt	8e-73
COG1212	247	COG1212, KdsB, CMP-2-keto-3-deoxyoctulosonic acid	3e-72
pfam02348	197	pfam02348, CTP_transf_3, Cytidylyltransferase	1e-54
TIGR00466	238	TIGR00466, kdsB, 3-deoxy-D-manno-octulosonate cyti	8e-54
cd02518	233	cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase i	2e-21
cd02513	223	cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase ac	5e-19
COG1861	241	COG1861, SpsF, Spore coat polysaccharide biosynthe	6e-17
TIGR03584	222	TIGR03584, PseF, pseudaminic acid CMP-transferase	6e-14
COG1083	228	COG1083, NeuA, CMP-N-acetylneuraminic acid synthet	6e-13
pfam12804	178	pfam12804, NTP_transf_3, MobA-like NTP transferase	2e-08
cd04182	186	cd04182, GT_2_like_f, GT_2_like_f is a subfamily o	2e-06
cd02540	229	cd02540, GT2_GlmU_N_bac, N-terminal domain of bact	6e-05
COG2266	177	COG2266, COG2266, GTP:adenosylcobinamide-phosphate	3e-04
COG0746	192	COG0746, MobA, Molybdopterin-guanine dinucleotide	3e-04
COG2068	199	COG2068, COG2068, Uncharacterized MobA-related pro	4e-04
cd02516	218	cd02516, CDP-ME_synthetase, CDP-ME synthetase is i	6e-04
pfam01128	221	pfam01128, IspD, Uncharacterized protein family UP	0.002
TIGR00453	217	TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phospha	0.004

>gnl|CDD|215495 PLN02917, PLN02917, CMP-KDO synthetase

 Score =  431 bits (1110), Expect = e-155
 Identities = 189/209 (90%), Positives = 197/209 (94%)

Query: 3   SKSICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSR 62
           S S  S S SSSSTKSWIVHGIVAGAAIA A+GA AYL RS+ FRSRVVGIIPARFASSR
Sbjct: 1   SPSSSSSSSSSSSTKSWIVHGIVAGAAIAAAIGAGAYLRRSRKFRSRVVGIIPARFASSR 60

Query: 63  FEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRN 122
           FEGKPLV+ILGKPMIQRTWER+KLATTLDH+VVATDDE+IAECC+ FGADVIMTSESCRN
Sbjct: 61  FEGKPLVHILGKPMIQRTWERAKLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRN 120

Query: 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED 182
           GTERCNEAL+KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED
Sbjct: 121 GTERCNEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED 180

Query: 183 AFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
           A DPNRVKCVVDN GYAIYFSRGLIPYNK
Sbjct: 181 ASDPNRVKCVVDNQGYAIYFSRGLIPYNK 209

Length = 293

>gnl|CDD|133010 cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

 Score =  283 bits (727), Expect = 7e-98
 Identities = 88/164 (53%), Positives = 114/164 (69%), Gaps = 1/164 (0%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           +V+ +IPAR+ASSR  GKPL +I GKPMIQ  +ER+K A  LD +VVATDDE+IA+  + 
Sbjct: 1   KVIVVIPARYASSRLPGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDERIADAVES 60

Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
           FG  V+MTS    +GT+R  E  +KL+   DIVVN+QGDEPLI PE+ID VV AL+  P 
Sbjct: 61  FGGKVVMTSPDHPSGTDRIAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPG 120

Query: 169 AVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
              +T  T +   E+ F+PN VK V+D  GYA+YFSR  IPY +
Sbjct: 121 VDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPIPYPR 164

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. Length = 239

>gnl|CDD|235473 PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

 Score =  255 bits (653), Expect = 2e-86
 Identities = 86/164 (52%), Positives = 110/164 (67%), Gaps = 4/164 (2%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           + + IIPAR+AS+R  GKPL +I GKPMI R +ER+  A   D +VVATDDE+IA+  + 
Sbjct: 2   KFLIIIPARYASTRLPGKPLADIGGKPMIVRVYERASKAG-ADRVVVATDDERIADAVEA 60

Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           FG +V+MTS    +GT+R  EA  KL     DIVVN+QGDEPLI PEIID V + L A P
Sbjct: 61  FGGEVVMTSPDHPSGTDRIAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPL-ANP 119

Query: 168 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 210
           +A  +T    +   E+AF+PN VK V+D  G A+YFSR  IPY 
Sbjct: 120 EADMATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRAPIPYG 163

Length = 245

>gnl|CDD|184007 PRK13368, PRK13368, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

 Score =  220 bits (562), Expect = 8e-73
 Identities = 73/163 (44%), Positives = 105/163 (64%), Gaps = 3/163 (1%)

Query: 50  VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
           VV +IPAR+ SSR  GKPL++ILGKPMIQ  +ER+  A  ++ + VATDD++I +  + F
Sbjct: 3   VVVVIPARYGSSRLPGKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQRIEDAVEAF 62

Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
           G  V+MTS+   +GT+R  E + K+E   DI +N+QGDEP+I P  ID +++ +   P  
Sbjct: 63  GGKVVMTSDDHLSGTDRLAEVMLKIE--ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSI 120

Query: 170 VFSTAVTSLKPEDAF-DPNRVKCVVDNHGYAIYFSRGLIPYNK 211
             +T    +  E+ F  PN VK VVD +G A+YFSR  IP  +
Sbjct: 121 NVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSPIPSRR 163

Length = 238

>gnl|CDD|224133 COG1212, KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

 Score =  219 bits (559), Expect = 3e-72
 Identities = 82/163 (50%), Positives = 110/163 (67%), Gaps = 2/163 (1%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           + V IIPAR AS+R  GKPL +I GKPMI R  ER+ L +  D +VVATDDE+IAE  Q 
Sbjct: 3   KFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERA-LKSGADRVVVATDDERIAEAVQA 61

Query: 109 FGADVIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           FG + +MTS+  ++GT+R  E ++KL     +I+VN+QGDEP IEPE+I  V + L+ + 
Sbjct: 62  FGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSN 121

Query: 168 DAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 210
             + + AV     E+AF+PN VK V+D  GYA+YFSR  IPY 
Sbjct: 122 ADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYG 164

Length = 247

>gnl|CDD|216984 pfam02348, CTP_transf_3, Cytidylyltransferase

 Score =  172 bits (438), Expect = 1e-54
 Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 1/162 (0%)

Query: 51  VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
           + IIPAR  S R  GK L+ + GKP+I R  E +  +   D +VVATD E+IA+  ++FG
Sbjct: 1   IAIIPARSGSKRLPGKNLLKLGGKPLIARVIEAALQSKLFDKVVVATDSEEIADIAEKFG 60

Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170
           A V+M   S  +GT+R  EA++      +I+VN+QGDEPL++P  I   ++ L+ A +  
Sbjct: 61  AGVVMRRGSLASGTDRFIEAVKAFLADEEIIVNLQGDEPLLQPTSILRAIEHLREAGEDY 120

Query: 171 FSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
            ST V  +   E+  +PN +K V+D+ GYA+YFSR  IPY +
Sbjct: 121 VSTLVKPVVSSEEILNPNPLKVVLDDAGYALYFSRSPIPYIR 162

This family consists of two main Cytidylyltransferase activities: 1) 3-deoxy-manno-octulosonate cytidylyltransferase,, EC:2.7.7.38 catalyzing the reaction:- CTP + 3-deoxy-D-manno-octulosonate <=> diphosphate + CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate cytidylyltransferase EC:2.7.7.43, catalyzing the reaction:- CTP + N-acylneuraminate <=> diphosphate + CMP-N-acylneuraminate. NeuAc cytydilyltransferase of Mannheimia haemolytica has been characterized describing kinetics and regulation by substrate charge, energetic charge and amino-sugar demand. Length = 197

>gnl|CDD|129558 TIGR00466, kdsB, 3-deoxy-D-manno-octulosonate cytidylyltransferase

 Score =  172 bits (436), Expect = 8e-54
 Identities = 79/160 (49%), Positives = 103/160 (64%), Gaps = 2/160 (1%)

Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           IIPAR ASSR  GKPL +I GKPMI    E +   +  D  +VATDDE +A+ CQ+FG +
Sbjct: 3   IIPARLASSRLPGKPLEDIFGKPMIVHVAENA-NESGADRCIVATDDESVAQTCQKFGIE 61

Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V MTS+   +GTER  E ++KL  K D  +VN+QGDEP I  EII  V   L      + 
Sbjct: 62  VCMTSKHHNSGTERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMA 121

Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
           + AV     E+AF+PN VK V+D+ GYA+YFSR LIP+++
Sbjct: 122 ALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDR 161

[Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 238

>gnl|CDD|133011 cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

 Score = 87.6 bits (218), Expect = 2e-21
 Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 8/120 (6%)

Query: 51  VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVAT----DDEKIAECC 106
           V II AR  S+R  GK L  + GKP+++   +R K +  +D +V+AT    +D+ +    
Sbjct: 1   VAIIQARMGSTRLPGKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALA 60

Query: 107 QQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166
           ++ G  V   SE   +   R  +A +  E   D+VV I GD PLI+PEIID V++    +
Sbjct: 61  KKLGVKVFRGSEE--DVLGRYYQAAE--EYNADVVVRITGDCPLIDPEIIDAVIRLFLKS 116

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. Length = 233

>gnl|CDD|133006 cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

 Score = 81.0 bits (201), Expect = 5e-19
 Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           +++ IIPAR  S    GK +  + GKP+I  T E +  +   D +VV+TDDE+IAE  ++
Sbjct: 1   KILAIIPARGGSKGIPGKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEEIAEVARK 60

Query: 109 FGADVI-MTSESCRNGTERCNEALQ-------KLEKKYDIVVNIQGDEPLIEPEIIDGVV 160
           +GA+V  +        T    + +        +L + +DIVV +Q   PL   E ID  +
Sbjct: 61  YGAEVPFLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAI 120

Query: 161 KALQAAP-DAVFS 172
           + L +   D+VFS
Sbjct: 121 ELLLSEGADSVFS 133

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. Length = 223

>gnl|CDD|224774 COG1861, SpsF, Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]

 Score = 76.3 bits (188), Expect = 6e-17
 Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 8/121 (6%)

Query: 47  RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK----I 102
            S ++ II AR  S+R  GK L+ + G+PMI+   ER + +  LD +VVAT D++    +
Sbjct: 1   MSMILVIIQARMGSTRLPGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDAL 60

Query: 103 AECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 162
            E C+  G  V   SE   +  +R   A++      D+VV + GD P ++PE++D  V  
Sbjct: 61  EEVCRSHGFYVFRGSEE--DVLQRFIIAIKA--YSADVVVRVTGDNPFLDPELVDAAVDR 116

Query: 163 L 163
            
Sbjct: 117 H 117

Length = 241

>gnl|CDD|163336 TIGR03584, PseF, pseudaminic acid CMP-transferase

 Score = 67.4 bits (165), Expect = 6e-14
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 51  VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
           + IIPAR  S R   K +    GKPMI  + E +  +   D +VV+TDDE+IAE  + +G
Sbjct: 1   IAIIPARGGSKRIPRKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDEEIAEVAKSYG 60

Query: 111 ADV-IMTSESC---RNGT-ERCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKAL 163
           A V  +  +       GT      A+++L+  K+YD    I    P ++ +I+    + L
Sbjct: 61  ASVPFLRPKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELL 120

Query: 164 QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF 202
              P+A F  +VTS     AF   R   + +N G  ++F
Sbjct: 121 -KQPNAHFVFSVTSF----AFPIQRAFKLKENGGVEMFF 154

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to , this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Length = 222

>gnl|CDD|224008 COG1083, NeuA, CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

 Score = 64.7 bits (158), Expect = 6e-13
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 7/162 (4%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           + + IIPAR  S   + K +    GKP+I  T E +  +   D +V+++D E+I E  ++
Sbjct: 3   KNIAIIPARGGSKGIKNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEEAKK 62

Query: 109 FGADV-IMTSESCRNGTERCN----EALQKLEKKYDIVVNIQGDEPLIEPEIID-GVVKA 162
           +GA V +   +   +           AL+      D ++ +Q   PL+    I     K 
Sbjct: 63  YGAKVFLKRPKELASDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKF 122

Query: 163 LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR 204
           L    D++FS       P  AF  N  +    N     + +R
Sbjct: 123 LNNQYDSLFSAVECEHHPYKAFSLNNGEVKPVNED-PDFETR 163

Length = 228

>gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 16/119 (13%)

Query: 59  ASSRFEG-KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTS 117
            SSR  G K L+ + GKP+++R  +R  L    D +VV T+  +IA      G  V+   
Sbjct: 8   RSSRMGGDKALLPLGGKPLLERVLDR--LRPAGDEVVVVTNRPEIAAALAGLGVPVV--- 62

Query: 118 ESCRNGTERCN------EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170
               +              L+       ++V +  D P + P+++  ++ AL+A+   +
Sbjct: 63  ---PDPDPGQGPLAGLAAGLRAAPDADAVLV-LACDMPFLTPDLLRRLLAALEASGADI 117

This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178

>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 20/132 (15%)

Query: 50  VVGIIPARFASSRFEG-KPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIAECC 106
           +  II A   SSR  G K L+ + GKP+++   + + LA  L  ++V    + + +    
Sbjct: 1   IAAIILAAGRSSRMGGNKLLLPLDGKPLLRHALDAA-LAAGLSRVIVVLGAEADAVRAAL 59

Query: 107 QQFGADVI--------MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158
                 V+        M S S   G       L+ L    D V+ +  D+PL+  E +  
Sbjct: 60  AGLPVVVVINPDWEEGM-SSSLAAG-------LEALPADADAVLILLADQPLVTAETLRA 111

Query: 159 VVKALQAAPDAV 170
           ++ A +     +
Sbjct: 112 LIDAFREDGAGI 123

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 186

>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU

 Score = 42.1 bits (100), Expect = 6e-05
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 11/123 (8%)

Query: 66  KPLVNILGKPMIQRTWERS-KLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGT 124
           K L  + GKPM++   + +  L      +VV    E++ +       + ++  E  + GT
Sbjct: 18  KVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANPNVEFVLQEE--QLGT 75

Query: 125 E---RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE 181
               +   AL  L+     V+ + GD PLI PE +  +++A + A   V    V + + E
Sbjct: 76  GHAVKQ--ALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADV---TVLTAELE 130

Query: 182 DAF 184
           D  
Sbjct: 131 DPT 133

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229

>gnl|CDD|225175 COG2266, COG2266, GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 13/114 (11%)

Query: 66  KPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNG 123
           KPL+ + GKP+I R      L   +D ++VA      K  E  +  G  VI T      G
Sbjct: 19  KPLLEVCGKPLIDRV--LEALRKIVDEIIVAISPHTPKTKEYLESVGVKVIETP---GEG 73

Query: 124 TER-CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTA 174
                  AL+ L      ++ +  D P + P IID V+ A  +   P      A
Sbjct: 74  YVEDLRFALESLGTP---ILVVSADLPFLNPSIIDSVIDAAASVEVPIVTVVKA 124

Length = 177

>gnl|CDD|223817 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 18/126 (14%)

Query: 52  GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGA 111
           G+I A   S R   K L+ + G+P+I+   +R  L   +D +V++  +        +FG 
Sbjct: 7   GVILAGGKSRRMRDKALLPLNGRPLIEHVIDR--LRPQVDVVVISA-NRNQGR-YAEFGL 62

Query: 112 DVIMTSESCRNGTERCN------EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165
            V+       +             AL+      + V+ +  D P I PE+++ ++ A + 
Sbjct: 63  PVV------PDELPGFGPLAGILAALRHF--GTEWVLVLPCDMPFIPPELVERLLSAFKQ 114

Query: 166 APDAVF 171
              A+ 
Sbjct: 115 TGAAIV 120

Length = 192

>gnl|CDD|224979 COG2068, COG2068, Uncharacterized MobA-related protein [General function prediction only]

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 19/135 (14%)

Query: 47  RSRVVGIIPARFASSRF-EGKPLVNILGKPMIQRTWERSKLATTLDHLVVAT---DDEKI 102
            S V  ++ A   SSR  + K L  + GKP+++ + E +  A  LD ++V T     E +
Sbjct: 3   PSTVAAVVLAAGRSSRMGQPKLLAPLDGKPLVRASAETALSAG-LDRVIVVTGHRVAEAV 61

Query: 103 AECCQQFGADVIMT-------SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEI 155
                Q G  V++        S S + G       L+  + + D VV + GD P + P  
Sbjct: 62  EALLAQLGVTVVVNPDYAQGLSTSLKAG-------LRAADAEGDGVVLMLGDMPQVTPAT 114

Query: 156 IDGVVKALQAAPDAV 170
           +  ++ A +A   AV
Sbjct: 115 VRRLIAAFRARGAAV 129

Length = 199

>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 23/136 (16%)

Query: 50  VVGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIAE 104
           V  II A  + SR      K  + + GKP+++ T E       +D +VV    DD  +A+
Sbjct: 1   VAAIILAAGSGSRMGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAK 60

Query: 105 CCQQFGADVIMT--------SESCRNGTERCNEALQKLEK-KYDIVVNIQ-GDEPLIEPE 154
              ++G   ++          +S  NG       L+ L     DIV+ I     P + PE
Sbjct: 61  ELAKYGLSKVVKIVEGGATRQDSVLNG-------LKALPDADPDIVL-IHDAARPFVSPE 112

Query: 155 IIDGVVKALQAAPDAV 170
           +ID ++ AL+    A+
Sbjct: 113 LIDRLIDALKEYGAAI 128

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218

>gnl|CDD|216314 pfam01128, IspD, Uncharacterized protein family UPF0007

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 50  VVGIIPARFASSRF-EGKP--LVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECC 106
           VV +IPA  +  R   G P   + +LG+P+++ T +    +  +D +VVA   +   E  
Sbjct: 1   VVAVIPAAGSGKRMGAGVPKQFLQLLGQPLLEHTVDAFLASPVVDRIVVAVSPDDTPEFR 60

Query: 107 QQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL-QA 165
           Q  G   I          +     L+ L      V+   G  P +    +  ++ AL   
Sbjct: 61  QLLGDPSIQLVAGGDTRQDSVLNGLKALAGTAKFVLVHDGARPCLPHADLARLLAALETG 120

Query: 166 APDAVFSTAVT 176
              A+ +  VT
Sbjct: 121 TQGAILALPVT 131

Length = 221

>gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 19/135 (14%)

Query: 53  IIPARFASSRF-EGKP--LVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
           +IPA    +RF  G P   + + G+P+++   +       +D +VV    +      +  
Sbjct: 3   VIPAAGRGTRFGSGVPKQYLELGGRPLLEHALDAFLAHPAIDEVVVVVSPDDTEFFQKYL 62

Query: 110 GADVIMT--------SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 161
            A  +           +S RNG       L+ L+   + V+      P +  E++D +++
Sbjct: 63  VARAVPKIVAGGDTRQDSVRNG-------LKALKD-AEFVLVHDAARPFVPKELLDRLLE 114

Query: 162 ALQAAPDAVFSTAVT 176
           AL+ A  A+ +  V 
Sbjct: 115 ALRKAGAAILALPVA 129

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 217

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
PLN02917	293	CMP-KDO synthetase	100.0
COG1212	247	KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase	99.95
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	99.94
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.92
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.91
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	99.91
PF01128	221	IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.9
PF02348	217	CTP_transf_3: Cytidylyltransferase; InterPro: IPR0	99.89
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.89
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.87
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	99.87
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	99.87
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	99.86
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	99.86
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	99.85
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	99.85
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	99.84
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	99.84
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.83
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.82
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	99.82
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	99.82
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	99.81
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	99.81
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	99.81
COG1083	228	NeuA CMP-N-acetylneuraminic acid synthetase [Cell	99.8
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	99.8
COG2068	199	Uncharacterized MobA-related protein [General func	99.79
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	99.78
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	99.76
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	99.76
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	99.75
PRK00560	196	molybdopterin-guanine dinucleotide biosynthesis pr	99.74
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.74
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.73
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.72
COG2266	177	GTP:adenosylcobinamide-phosphate guanylyltransfera	99.72
PRK14500	346	putative bifunctional molybdopterin-guanine dinucl	99.71
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.69
COG1861	241	SpsF Spore coat polysaccharide biosynthesis protei	99.69
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.68
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.68
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	99.67
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.67
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	99.67
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.67
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.66
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.64
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	99.63
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	99.6
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.59
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	99.57
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	99.55
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	99.54
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.54
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	99.54
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	99.54
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.53
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	99.52
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	99.52
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	99.52
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	99.52
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	99.52
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	99.51
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	99.51
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	99.51
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	99.49
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	99.49
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	99.48
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	99.48
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	99.47
PRK10122	297	GalU regulator GalF; Provisional	99.47
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.46
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	99.46
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	99.45
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	99.45
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.44
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	99.43
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	99.42
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	99.41
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	99.41
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	99.39
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.37
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	99.36
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.36
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	99.34
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	99.34
COG4750	231	LicC CTP:phosphocholine cytidylyltransferase invol	99.33
PRK00576	178	molybdopterin-guanine dinucleotide biosynthesis pr	99.31
COG0836	333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	99.27
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.17
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	99.1
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.09
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	99.08
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	99.07
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.91
cd04180	266	UGPase_euk_like Eukaryotic UGPase-like includes UD	98.51
cd04193	323	UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala	98.25
PTZ00339	482	UDP-N-acetylglucosamine pyrophosphorylase; Provisi	98.11
KOG1461	673	consensus Translation initiation factor 2B, epsilo	97.84
COG1920	210	Predicted nucleotidyltransferase, CobY/MobA/RfbA f	97.51
PF01983	217	CofC: Guanylyl transferase CofC like; InterPro: IP	97.46
cd02511	229	Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4	97.36
cd06421	234	CESA_CelA_like CESA_CelA_like are involved in the	97.25
PRK10714	325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	97.2
PLN02435	493	probable UDP-N-acetylglucosamine pyrophosphorylase	97.08
cd00897	300	UGPase_euk Eukaryotic UGPase catalyses the synthes	97.05
PLN02474	469	UTP--glucose-1-phosphate uridylyltransferase	97.05
PRK11204	420	N-glycosyltransferase; Provisional	97.02
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	97.02
cd06424	315	UGGPase UGGPase catalyzes the synthesis of UDP-Glu	97.0
PLN02830	615	UDP-sugar pyrophosphorylase	96.88
cd06438	183	EpsO_like EpsO protein participates in the methano	96.84
PRK13915	306	putative glucosyl-3-phosphoglycerate synthase; Pro	96.84
TIGR03030	713	CelA cellulose synthase catalytic subunit (UDP-for	96.78
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	96.75
TIGR03111	439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	96.75
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	96.71
TIGR03469	384	HonB hopene-associated glycosyltransferase HpnB. T	96.66
PLN02726	243	dolichyl-phosphate beta-D-mannosyltransferase	96.65
PRK11498	852	bcsA cellulose synthase catalytic subunit; Provisi	96.58
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	96.53
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	96.46
PF01704	420	UDPGP: UTP--glucose-1-phosphate uridylyltransferas	96.32
cd06434	235	GT2_HAS Hyaluronan synthases catalyze polymerizati	96.28
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	96.23
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	96.07
PF10111	281	Glyco_tranf_2_2: Glycosyltransferase like family 2	96.0
TIGR03472	373	HpnI hopanoid biosynthesis associated glycosyl tra	95.94
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	95.93
PF09837	122	DUF2064: Uncharacterized protein conserved in bact	95.92
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	95.91
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	95.87
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	95.82
PRK14583	444	hmsR N-glycosyltransferase; Provisional	95.68
COG4284	472	UDP-glucose pyrophosphorylase [Carbohydrate transp	95.6
cd02520	196	Glucosylceramide_synthase Glucosylceramide synthas	95.51
PRK10073	328	putative glycosyl transferase; Provisional	95.51
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	95.47
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	95.44
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	95.42
PTZ00260	333	dolichyl-phosphate beta-glucosyltransferase; Provi	95.38
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	95.33
cd06437	232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	95.33
cd06913	219	beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran	95.3
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	95.2
PRK10018	279	putative glycosyl transferase; Provisional	94.92
COG1215	439	Glycosyltransferases, probably involved in cell wa	94.9
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	94.86
COG1216	305	Predicted glycosyltransferases [General function p	94.7
cd04196	214	GT_2_like_d Subfamily of Glycosyltransferase Famil	94.54
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	94.4
PRK10063	248	putative glycosyl transferase; Provisional	94.37
cd02526	237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	94.33
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	94.2
cd04191	254	Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon	93.94
cd06436	191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	93.11
PRK05454	691	glucosyltransferase MdoH; Provisional	93.06
cd06420	182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	92.89
cd02522	221	GT_2_like_a GT_2_like_a represents a glycosyltrans	92.75
KOG2388	477	consensus UDP-N-acetylglucosamine pyrophosphorylas	91.71
COG0463	291	WcaA Glycosyltransferases involved in cell wall bi	89.5
KOG2978	238	consensus Dolichol-phosphate mannosyltransferase [	89.2
PF13641	228	Glyco_tranf_2_3: Glycosyltransferase like family 2	89.06
PRK14716	504	bacteriophage N4 adsorption protein B; Provisional	87.17
COG3222	211	Uncharacterized protein conserved in bacteria [Fun	85.7
PF13704	97	Glyco_tranf_2_4: Glycosyl transferase family 2	85.32
cd04190	244	Chitin_synth_C C-terminal domain of Chitin Synthas	84.34
PRK11234	727	nfrB bacteriophage N4 adsorption protein B; Provis	83.69
cd02514	334	GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es	82.66

>PLN02917 CMP-KDO synthetase

Probab=100.00  E-value=3.5e-39  Score=279.85  Aligned_cols=206  Identities=91%  Similarity=1.347  Sum_probs=179.6

Q ss_pred             CCCCCCCCCCchhHHHHHHhhcchhhhhhceeehcccCCCCCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHH
Q 028260            6 ICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSK   85 (211)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~   85 (211)
                      ..+.|.+++|||+||+|||++|++++.++|+-.|++|.++..|++.+||||+|.|+||++|+|++++|+|||+|+++++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aIIpA~G~SsR~~~K~L~~i~GkPLL~~vi~~a~   83 (293)
T PLN02917          4 SSSSSSSSSSTKSWIVHGIVAGAAIAAAIGAGAYLRRSRKFRSRVVGIIPARFASSRFEGKPLVHILGKPMIQRTWERAK   83 (293)
T ss_pred             ccCCccccccchhHHhhhhcccccceeeccCchhhhhccccCCcEEEEEecCCCCCCCCCCCeeeECCEEHHHHHHHHHH
Confidence            34556677789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028260           86 LATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (211)
Q Consensus        86 ~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (211)
                      +++.++.|||+++++++.+++.+++++++.+++..++++.++..|++.+..+.|++++++||+||+++++|+++++.+.+
T Consensus        84 ~~~~~~~VVV~~~~e~I~~~~~~~~v~vi~~~~~~~~GT~~~~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~  163 (293)
T PLN02917         84 LATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  163 (293)
T ss_pred             cCCCCCEEEEECChHHHHHHHHHcCCEEEeCCcccCCchHHHHHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHh
Confidence            87777888888888999888887888887776666788888888888875446899999999999999999999998876


Q ss_pred             CCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEeeecCCCCCCC
Q 028260          166 APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK  211 (211)
Q Consensus       166 ~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~~~~~~~~~  211 (211)
                      +.+.+++..+..++.+...+..+++++.+.+|+++||||+++|+.|
T Consensus       164 ~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~k  209 (293)
T PLN02917        164 APDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNK  209 (293)
T ss_pred             cCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCC
Confidence            6677776666656556677888899999999999999999887653

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=7.5e-27  Score=192.08  Aligned_cols=162  Identities=50%  Similarity=0.800  Sum_probs=148.0

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHH
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTER  126 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~s  126 (211)
                      +|+..+||||+=.||||++|+|..++|+||++|+.+++.++ +.+++||.||++++.+.+..+|.+++..+.+...|+++
T Consensus         1 ~~~~~viIPAR~~STRLpgKPLadI~GkpmI~rV~e~a~~s-~~~rvvVATDde~I~~av~~~G~~avmT~~~h~SGTdR   79 (247)
T COG1212           1 TMKFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERALKS-GADRVVVATDDERIAEAVQAFGGEAVMTSKDHQSGTDR   79 (247)
T ss_pred             CCceEEEEecchhcccCCCCchhhhCCchHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCEEEecCCCCCCccHH
Confidence            47888999999999999999999999999999999999998 69999999999999999999999999998888899999


Q ss_pred             HHHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-CCCCCCCCCCCeEEEeCCCccEEeeec
Q 028260          127 CNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIYFSR  204 (211)
Q Consensus       127 i~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~~~~~~~d~~~~~~v~~~~~~~~~~~~  204 (211)
                      +..+++.+. .+.+.++=+++|.||+.++.|+.+++.+.++ ++-++.+..+ .++++.+++|.+|+|.|.+|+++||||
T Consensus        80 ~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~-~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSR  158 (247)
T COG1212          80 LAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENS-NADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSR  158 (247)
T ss_pred             HHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhC-CcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEc
Confidence            999999884 3567899999999999999999999999876 5556666666 456889999999999999999999999


Q ss_pred             CCCCCC
Q 028260          205 GLIPYN  210 (211)
Q Consensus       205 ~~~~~~  210 (211)
                      .++||+
T Consensus       159 s~iP~~  164 (247)
T COG1212         159 APIPYG  164 (247)
T ss_pred             CCCCCc
Confidence            999997

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=99.94  E-value=5.2e-26  Score=191.94  Aligned_cols=157  Identities=48%  Similarity=0.794  Sum_probs=131.6

Q ss_pred             EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHHHH
Q 028260           52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEAL  131 (211)
Q Consensus        52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al  131 (211)
                      +||||+|.|+||++|+|++++|+|||+|+++++.++ .+++|+|+++++++.+.+++++++++.+.....++++++..++
T Consensus         2 ~iIpA~g~s~R~~~K~L~~l~GkPli~~~le~~~~~-~~d~VvVvt~~~~i~~~~~~~g~~~v~~~~~~~~Gt~r~~~~~   80 (238)
T TIGR00466         2 VIIPARLASSRLPGKPLEDIFGKPMIVHVAENANES-GADRCIVATDDESVAQTCQKFGIEVCMTSKHHNSGTERLAEVV   80 (238)
T ss_pred             EEEecCCCCCCCCCCeecccCCcCHHHHHHHHHHhC-CCCeEEEEeCHHHHHHHHHHcCCEEEEeCCCCCChhHHHHHHH
Confidence            799999999999999999999999999999999987 4999999999888888888888887765555678888888777


Q ss_pred             Hhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeC-CCCCCCCCCCeEEEeCCCccEEeeecCCCCC
Q 028260          132 QKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY  209 (211)
Q Consensus       132 ~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~-~~~~~~d~~~~~~v~~~~~~~~~~~~~~~~~  209 (211)
                      +.+. .+.|+++++++|+||++++.|+++++.+.+. +.-+++...++ ++++..|++.+|++.+.+|+++||||.++|+
T Consensus        81 ~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~-~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~  159 (238)
T TIGR00466        81 EKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATK-NVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPF  159 (238)
T ss_pred             HHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcC-CCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCC
Confidence            7652 2468999999999999999999999998532 22334445554 4467888999999989999999999998877


Q ss_pred             C
Q 028260          210 N  210 (211)
Q Consensus       210 ~  210 (211)
                      +
T Consensus       160 ~  160 (238)
T TIGR00466       160 D  160 (238)
T ss_pred             C
Confidence            5

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.92  E-value=6.9e-24  Score=178.26  Aligned_cols=159  Identities=52%  Similarity=0.812  Sum_probs=127.1

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC  127 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si  127 (211)
                      |++.+||||||+|+||++|+|++++|+|||+|+++++.++ ++++|+|+++++.+.+++.+++++++...++..+++.++
T Consensus         1 m~~~~iIlA~g~S~R~~~K~Ll~i~Gkpll~~~l~~l~~~-~i~~ivvv~~~~~i~~~~~~~~~~v~~~~~~~~~gt~~~   79 (245)
T PRK05450          1 MKFLIIIPARYASTRLPGKPLADIGGKPMIVRVYERASKA-GADRVVVATDDERIADAVEAFGGEVVMTSPDHPSGTDRI   79 (245)
T ss_pred             CceEEEEecCCCCCCCCCCcccccCCcCHHHHHHHHHHhc-CCCeEEEECCcHHHHHHHHHcCCEEEECCCcCCCchHHH
Confidence            7899999999999999999999999999999999999988 799999999988888877777888766554555566666


Q ss_pred             HHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeC-CCCCCCCCCCeEEEeCCCccEEeeec
Q 028260          128 NEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSR  204 (211)
Q Consensus       128 ~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~-~~~~~~d~~~~~~v~~~~~~~~~~~~  204 (211)
                      ..++..+. .+.+++++++||+||++++.++++++.+.++ .+.++.+  .+. ++....+++.++++.|.+|++.+|++
T Consensus        80 ~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e  157 (245)
T PRK05450         80 AEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLA--VPIHDAEEAFNPNVVKVVLDADGRALYFSR  157 (245)
T ss_pred             HHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeee--eecCCHHHhcCcCCCEEEeCCCCcEEEecC
Confidence            66666552 2357899999999999999999999988654 3433332  232 22334577788999999999999999


Q ss_pred             CCCCC
Q 028260          205 GLIPY  209 (211)
Q Consensus       205 ~~~~~  209 (211)
                      ++.+.
T Consensus       158 ~~~~~  162 (245)
T PRK05450        158 APIPY  162 (245)
T ss_pred             CCCCC
Confidence            98643

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.91  E-value=3.8e-23  Score=173.06  Aligned_cols=156  Identities=44%  Similarity=0.753  Sum_probs=121.1

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC  127 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si  127 (211)
                      |++.+||||||+|+||++|+|++++|+|||+|+++++.+++.+++|+|+++++++.+++++++++++..++...+++.++
T Consensus         1 m~~~aiIlA~g~s~R~~~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~~~i~~~~~~~~~~v~~~~~~~~~g~~~~   80 (238)
T PRK13368          1 MKVVVVIPARYGSSRLPGKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQRIEDAVEAFGGKVVMTSDDHLSGTDRL   80 (238)
T ss_pred             CcEEEEEecCCCCCCCCCCccCccCCcCHHHHHHHHHHhcCCCCeEEEECChHHHHHHHHHcCCeEEecCccCCCccHHH
Confidence            57899999999999999999999999999999999999986799999999988888888888888877665666677778


Q ss_pred             HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCC-CCCCCCCeEEEeCCCccEEeeecC
Q 028260          128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRG  205 (211)
Q Consensus       128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~-~~~d~~~~~~v~~~~~~~~~~~~~  205 (211)
                      ..+++.+  +.|++++++||+||++++.++++++.+.++....+.....+.... ...++...+++.+++|.+..|.++
T Consensus        81 ~~a~~~~--~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~  157 (238)
T PRK13368         81 AEVMLKI--EADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRS  157 (238)
T ss_pred             HHHHHhC--CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCC
Confidence            8888876  368999999999999999999999988644322222222222211 111244444566777888888854

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=99.91  E-value=1e-22  Score=170.51  Aligned_cols=159  Identities=54%  Similarity=0.863  Sum_probs=122.9

Q ss_pred             cEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHH
Q 028260           49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCN  128 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~  128 (211)
                      ++.+||||||+|+||++|+|++++|+|||+|+++++.+++++++|+|+++++.+.+++.++++++++.++...+++.++.
T Consensus         1 ~~~~iIlA~g~s~R~~~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~gt~~~~   80 (239)
T cd02517           1 KVIVVIPARYASSRLPGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDERIADAVESFGGKVVMTSPDHPSGTDRIA   80 (239)
T ss_pred             CEEEEEecCCCCCCCCCCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCcHHHHHHHHHcCCEEEEcCcccCchhHHHH
Confidence            36799999999999999999999999999999999998756999999999888888887778887766544455666777


Q ss_pred             HHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCC-CCCCCCCCCeEEEeCCCccEEeeecCCC
Q 028260          129 EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       129 ~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~-~~~~~d~~~~~~v~~~~~~~~~~~~~~~  207 (211)
                      .+++.+....|++++++||+||+++++++.+++.+.++++..+++...++. +....+...++++.+.+|.+.+|++++.
T Consensus        81 ~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~  160 (239)
T cd02517          81 EVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPI  160 (239)
T ss_pred             HHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCCCC
Confidence            777776422488999999999999999999999886442332333333432 2111244567788898999999997643

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []

Probab=99.90  E-value=3.2e-23  Score=173.16  Aligned_cols=145  Identities=25%  Similarity=0.395  Sum_probs=111.7

Q ss_pred             EEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcCCeEeeCCcccCCC
Q 028260           50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSESCRNG  123 (211)
Q Consensus        50 i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~v~vi~~~~~~~g~  123 (211)
                      +.+||+|||.|+|||   +|++++++|+|+|.|+++++.+.+.+++|+|++++++   ++++..+..+.++.      ||
T Consensus         1 V~aIilAaG~G~R~g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~v~iv~------GG   74 (221)
T PF01128_consen    1 VAAIILAAGSGSRMGSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSKKKVKIVE------GG   74 (221)
T ss_dssp             EEEEEEESS-STCCTSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHHTTEEEEE--------
T ss_pred             CEEEEeCCccchhcCcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcCCCEEEec------CC
Confidence            469999999999997   5999999999999999999999999999999997654   33444442333222      33


Q ss_pred             ---hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeee-C---CC----CCCCCCCCeEE
Q 028260          124 ---TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTS-L---KP----EDAFDPNRVKC  191 (211)
Q Consensus       124 ---~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~-~---~~----~~~~d~~~~~~  191 (211)
                         .+|+++||+.+....|+|++|++.+||++++.|+++++.+.+ +..++.+.++++ +   +.    ..++||+.++.
T Consensus        75 ~tR~~SV~ngL~~l~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~p~~DTik~v~~~~~v~~tldR~~l~~  154 (221)
T PF01128_consen   75 ATRQESVYNGLKALAEDCDIVLIHDAARPFVSPELIDRVIEAAREGHGAAIPALPVTDTIKRVDDDGFVTETLDRSKLWA  154 (221)
T ss_dssp             SSHHHHHHHHHHCHHCTSSEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEEEEE-SSEEEEESTTSBEEEEETGGGEEE
T ss_pred             hhHHHHHHHHHHHHHcCCCEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEEEEeccccEEEEecCCcccccCCHHHeee
Confidence               368999999987556899999999999999999999999987 444455555555 2   21    25899999999


Q ss_pred             EeCCCccEE
Q 028260          192 VVDNHGYAI  200 (211)
Q Consensus       192 v~~~~~~~~  200 (211)
                      +|+||+|..
T Consensus       155 ~QTPQ~F~~  163 (221)
T PF01128_consen  155 VQTPQAFRF  163 (221)
T ss_dssp             EEEEEEEEH
T ss_pred             ecCCCeecH
Confidence            999999965

The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....

>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2

Probab=99.89  E-value=2.7e-22  Score=165.53  Aligned_cols=160  Identities=38%  Similarity=0.637  Sum_probs=130.5

Q ss_pred             EEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHHH
Q 028260           51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEA  130 (211)
Q Consensus        51 ~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~a  130 (211)
                      .|||||+|+|+|+|+|++++++|+|||+|+++++++++.+++|||+|+++++.++++++++.++.+++...+.+++...+
T Consensus         1 iaiIpAR~gS~rlp~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~~g~~v~~~~~~~~~~~~r~~~~   80 (217)
T PF02348_consen    1 IAIIPARGGSKRLPGKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEEIDDIAEEYGAKVIFRRGSLADDTDRFIEA   80 (217)
T ss_dssp             EEEEEE-SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHTTSEEEE--TTSSSHHHHHHHH
T ss_pred             CEEEecCCCCCCCCcchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHHcCCeeEEcChhhcCCcccHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999988888888888888888


Q ss_pred             HHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeC-CCCCCCCCCCeEEEeCCCccEEeeecCCCC
Q 028260          131 LQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIP  208 (211)
Q Consensus       131 l~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~-~~~~~~d~~~~~~v~~~~~~~~~~~~~~~~  208 (211)
                      +.+... ..+.++.+.+|.||++++.++++++.+.+.....+....... ...+.++.+.++.+.+.++...+|++...+
T Consensus        81 ~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (217)
T PF02348_consen   81 IKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPVGSSVEIFNFNPLKVLFDDDGLELYFSEHVIP  160 (217)
T ss_dssp             HHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEECSHHHHTSTTSTEEEECTTSBEEEEESSESS
T ss_pred             HHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccccchhhcccccceEEEeccccchhhcccCCCc
Confidence            877642 234999999999999999999999999764332222222222 234567888999999999999999999888


Q ss_pred             CC
Q 028260          209 YN  210 (211)
Q Consensus       209 ~~  210 (211)
                      |.
T Consensus       161 ~~  162 (217)
T PF02348_consen  161 YI  162 (217)
T ss_dssp             EC
T ss_pred             cc
Confidence            75

7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.89  E-value=2.2e-22  Score=171.39  Aligned_cols=152  Identities=17%  Similarity=0.221  Sum_probs=118.3

Q ss_pred             CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcCCeEeeCCcccC
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSESCR  121 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~v~vi~~~~~~~  121 (211)
                      +++.+||||||.|+||+   +|+|++++|+|+|+|+++++.....+++|+|+++++.   ++...+.++..+.+.. ...
T Consensus        23 ~~i~aIILAAG~gsRmg~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~~~~i~~v~-gg~  101 (252)
T PLN02728         23 KSVSVILLAGGVGKRMGANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENIDVPLKFAL-PGK  101 (252)
T ss_pred             CceEEEEEcccccccCCCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhcCCceEEcC-CCC
Confidence            35789999999999997   6999999999999999999998667999999998543   2233344554443322 122


Q ss_pred             CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-CC---C----CCCCCCCCeEEEe
Q 028260          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LK---P----EDAFDPNRVKCVV  193 (211)
Q Consensus       122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~~---~----~~~~d~~~~~~v~  193 (211)
                      +...++++|++.+..+.+.|+++++++||++++.|+++++...++..++.++++++ ++   .    ..++||+.++.+|
T Consensus       102 ~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga~i~~~~~~dtik~v~~~~~v~~t~~R~~l~~~Q  181 (252)
T PLN02728        102 ERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKATIKEANSDSFVVKTLDRKRLWEMQ  181 (252)
T ss_pred             chHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCeEEEeecchhhEEEecCCCceeeccChHHeEEEe
Confidence            34678999999885456789999999999999999999998876655555666555 32   1    2589999999999


Q ss_pred             CCCccEE
Q 028260          194 DNHGYAI  200 (211)
Q Consensus       194 ~~~~~~~  200 (211)
                      +||+|..
T Consensus       182 TPQ~F~~  188 (252)
T PLN02728        182 TPQVIKP  188 (252)
T ss_pred             CCccchH
Confidence            9999954

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=99.87  E-value=1.3e-21  Score=163.67  Aligned_cols=151  Identities=15%  Similarity=0.258  Sum_probs=113.4

Q ss_pred             CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHH---HHHHHcCCe---EeeCCc
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA---ECCQQFGAD---VIMTSE  118 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~---~~~~~~~v~---vi~~~~  118 (211)
                      |++.+||||||.|+||+   +|+|++++|+|||+|+++++..++.+++++|++++++..   +.+++++..   +.... 
T Consensus         1 ~~~~~iIlAaG~g~R~g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~v~-   79 (230)
T PRK13385          1 MNYELIFLAAGQGKRMNAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRVEVVK-   79 (230)
T ss_pred             CceEEEEECCeeccccCCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCCCceEEcC-
Confidence            46789999999999995   699999999999999999999876799999999865533   344555431   11111 


Q ss_pred             ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-CC---C---CCCCCCCCeEE
Q 028260          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LK---P---EDAFDPNRVKC  191 (211)
Q Consensus       119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~~---~---~~~~d~~~~~~  191 (211)
                      ...+...++..|++.+. +.+.+++++||+||++++.++++++.+.++...+.....++ +.   .   ..+++|+.++.
T Consensus        80 ~g~~r~~sv~~gl~~~~-~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~dti~~~~~~~~~~~i~r~~~~~  158 (230)
T PRK13385         80 GGTERQESVAAGLDRIG-NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKDTVKRVKDKQVIETVDRNELWQ  158 (230)
T ss_pred             CCchHHHHHHHHHHhcc-CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEeccceEEEEcCCeeEeccCHHHHhh
Confidence            11233578899999874 35789999999999999999999999876544444444433 21   1   24578889999


Q ss_pred             EeCCCccEE
Q 028260          192 VVDNHGYAI  200 (211)
Q Consensus       192 v~~~~~~~~  200 (211)
                      +|+||+|..
T Consensus       159 ~qtpq~f~~  167 (230)
T PRK13385        159 GQTPQAFEL  167 (230)
T ss_pred             hcCCceeeH
Confidence            999999964

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=99.87  E-value=3.3e-21  Score=172.63  Aligned_cols=152  Identities=23%  Similarity=0.295  Sum_probs=114.1

Q ss_pred             CCCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc-CCe-EeeCCccc
Q 028260           46 FRSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GAD-VIMTSESC  120 (211)
Q Consensus        46 ~~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~-~v~-vi~~~~~~  120 (211)
                      .||++.+||||||.|+||+   +|++++++|+|||+|+++++.+.+.+++|+|+++++......... +.. +.... ..
T Consensus         2 ~mm~v~aIILAAG~GsRmg~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~~~v~~v~-gG   80 (378)
T PRK09382          2 LMSDISLVIVAAGRSTRFSAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEIKFVTLVT-GG   80 (378)
T ss_pred             CCCcceEEEECCCCCccCCCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccCCeEEEeC-CC
Confidence            4688999999999999996   699999999999999999999887789999999765433221111 111 11111 11


Q ss_pred             CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-CCC-CCCCCCCCeEEEeCCCcc
Q 028260          121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LKP-EDAFDPNRVKCVVDNHGY  198 (211)
Q Consensus       121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~~~-~~~~d~~~~~~v~~~~~~  198 (211)
                      .+...++++|++.+.  .|++++++||+||++++.++++++.+.++...+.+.++++ ++. ..++||+.++.+|+||+|
T Consensus        81 ~~r~~SV~~gL~~l~--~d~VLVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~~tldR~~l~~~QTPQ~f  158 (378)
T PRK09382         81 ATRQESVRNALEALD--SEYVLIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRANETVDREGLKLIQTPQLS  158 (378)
T ss_pred             chHHHHHHHHHHhcC--CCeEEEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEeeeEcCcccEEEEECCCCC
Confidence            223568999999884  4899999999999999999999998876533344444455 332 348999999999999999


Q ss_pred             EE
Q 028260          199 AI  200 (211)
Q Consensus       199 ~~  200 (211)
                      ..
T Consensus       159 ~~  160 (378)
T PRK09382        159 RT  160 (378)
T ss_pred             CH
Confidence            53

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=99.87  E-value=2.5e-21  Score=152.50  Aligned_cols=120  Identities=31%  Similarity=0.468  Sum_probs=102.8

Q ss_pred             EEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHHH
Q 028260           52 GIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEA  130 (211)
Q Consensus        52 aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~a  130 (211)
                      +||||||.|+||+ +|++++++|+|||+|+++++.+. ++++|+|+++++++...+...+++++.++.+..|+..++..|
T Consensus         1 ~vILa~G~s~Rmg~~K~l~~i~g~~li~~~l~~l~~~-~~~~Ivvv~~~~~~~~~~~~~~~~~v~~~~~~~G~~~sl~~a   79 (160)
T PF12804_consen    1 AVILAAGKSSRMGGPKALLPIGGKPLIERVLEALREA-GVDDIVVVTGEEEIYEYLERYGIKVVVDPEPGQGPLASLLAA   79 (160)
T ss_dssp             EEEEESSSCGGGTSCGGGSEETTEEHHHHHHHHHHHH-TESEEEEEESTHHHHHHHTTTTSEEEE-STSSCSHHHHHHHH
T ss_pred             CEEECCcCcccCCCCccceeECCccHHHHHHHHhhcc-CCceEEEecChHHHHHHHhccCceEEEeccccCChHHHHHHH
Confidence            6999999999998 69999999999999999999998 489999999988888777777899888776667788999999


Q ss_pred             HHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEE
Q 028260          131 LQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFST  173 (211)
Q Consensus       131 l~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v  173 (211)
                      +..+. ..+++++++||+||+++++++.+++.+.+ ..+.+++.
T Consensus        80 ~~~~~-~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~  122 (160)
T PF12804_consen   80 LSQLP-SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV  122 (160)
T ss_dssp             HHTST-TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred             HHhcc-cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence            99874 57899999999999999999999999864 44555443

...

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=99.86  E-value=3e-21  Score=161.50  Aligned_cols=150  Identities=22%  Similarity=0.310  Sum_probs=116.5

Q ss_pred             CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHH----cCCeEeeCCcc
Q 028260           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ----FGADVIMTSES  119 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~----~~v~vi~~~~~  119 (211)
                      +|++.+||||||.|+||+   +|++++++|+||++|+++.+..++.+++|||+++.++...+.+.    .+-.+..    
T Consensus         2 ~~~~~~vilAaG~G~R~~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~v~~----   77 (230)
T COG1211           2 RMMVSAVILAAGFGSRMGNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEV----   77 (230)
T ss_pred             CceEEEEEEcCccccccCCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhhccCCeEEE----
Confidence            467889999999999997   59999999999999999999999999999999986443322221    1112211    


Q ss_pred             cCCC---hHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-CC---C----CCCCCCC
Q 028260          120 CRNG---TERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LK---P----EDAFDPN  187 (211)
Q Consensus       120 ~~g~---~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~~---~----~~~~d~~  187 (211)
                      ..||   .+|+++||+.+.. ..++||+|++.+||++.+.|+++++...+...++.+.++++ ++   .    .++.||+
T Consensus        78 v~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~alpv~DTik~~~~~~~i~~t~~R~  157 (230)
T COG1211          78 VKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILALPVTDTLKRVDADGNIVETVDRS  157 (230)
T ss_pred             ecCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEEeeccCcEEEecCCCCeeeccChh
Confidence            2244   3678999998862 47999999999999999999999955555445555666665 32   1    3799999


Q ss_pred             CeEEEeCCCccEE
Q 028260          188 RVKCVVDNHGYAI  200 (211)
Q Consensus       188 ~~~~v~~~~~~~~  200 (211)
                      .+..+|+||+|..
T Consensus       158 ~l~~~QTPQ~F~~  170 (230)
T COG1211         158 GLWAAQTPQAFRL  170 (230)
T ss_pred             hhhhhhCCccccH
Confidence            9999999999965

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=99.86  E-value=2.5e-20  Score=153.97  Aligned_cols=127  Identities=35%  Similarity=0.529  Sum_probs=103.3

Q ss_pred             cEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCe-EeeCCccc----CCC
Q 028260           49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD-VIMTSESC----RNG  123 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~-vi~~~~~~----~g~  123 (211)
                      ++.+||||||.|+||++|++++++|+|||+|+++++.+++.+++|+|+++++++.+.+.++++. ++.++...    .+.
T Consensus         1 ~~~~iIlA~G~s~R~~~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (223)
T cd02513           1 KILAIIPARGGSKGIPGKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEEIAEVARKYGAEVPFLRPAELATDTASS   80 (223)
T ss_pred             CeEEEEecCCCCCCCCCcccchhCCccHHHHHHHHHHhCCCCCEEEEECCcHHHHHHHHHhCCCceeeCChHHCCCCCCc
Confidence            4679999999999999999999999999999999999887789999999888888887777763 33333222    244


Q ss_pred             hHHHHHHHHhhcc---CCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEee
Q 028260          124 TERCNEALQKLEK---KYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAV  175 (211)
Q Consensus       124 ~~si~~al~~l~~---~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~  175 (211)
                      ..++..+++.+..   +.|++++++||+||+++++++++++.+.+ +.++++++..
T Consensus        81 ~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~  136 (223)
T cd02513          81 IDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE  136 (223)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            5778888887742   25899999999999999999999999864 4577777654

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=99.85  E-value=2.8e-20  Score=155.53  Aligned_cols=125  Identities=31%  Similarity=0.470  Sum_probs=107.4

Q ss_pred             EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEe-eCCccc----CCChHH
Q 028260           52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVI-MTSESC----RNGTER  126 (211)
Q Consensus        52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi-~~~~~~----~g~~~s  126 (211)
                      +||||+|.|+||++|++++++|+||+.|+++++.+++.+++|+|+++++++.++++++++.+. .+++..    .+..++
T Consensus         2 aiIpArG~Skr~~~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~~~i~~~a~~~g~~v~~~r~~~l~~d~~~~~~s   81 (222)
T TIGR03584         2 AIIPARGGSKRIPRKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDEEIAEVAKSYGASVPFLRPKELADDFTGTAPV   81 (222)
T ss_pred             EEEccCCCCCCCCCccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHcCCEeEEeChHHHcCCCCCchHH
Confidence            799999999999999999999999999999999999889999999999999999998998764 444322    344578


Q ss_pred             HHHHHHhhc--cCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeee
Q 028260          127 CNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVT  176 (211)
Q Consensus       127 i~~al~~l~--~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~  176 (211)
                      +..+++.+.  .+.|.++++++|+||+++++|+++++.+.+ ++|+++++...
T Consensus        82 i~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~  134 (222)
T TIGR03584        82 VKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSF  134 (222)
T ss_pred             HHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeecc
Confidence            899998774  246899999999999999999999999964 47888887653

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.85  E-value=3.5e-20  Score=152.39  Aligned_cols=118  Identities=18%  Similarity=0.227  Sum_probs=96.7

Q ss_pred             CCCCCcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCC
Q 028260           44 KNFRSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRN  122 (211)
Q Consensus        44 ~~~~m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g  122 (211)
                      +...|++.+||||||.|+||| +|++++++|+|||+|+++++..  .+++|+|++++.+........++.++.++....|
T Consensus         2 ~~~~~~~~~vILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~l~~--~~~~ivvv~~~~~~~~~~~~~~~~~i~~~~~~~G   79 (200)
T PRK02726          2 KTVKNNLVALILAGGKSSRMGQDKALLPWQGVPLLQRVARIAAA--CADEVYIITPWPERYQSLLPPGCHWLREPPPSQG   79 (200)
T ss_pred             CCcCCCceEEEEcCCCcccCCCCceeeEECCEeHHHHHHHHHHh--hCCEEEEECCCHHHHHhhccCCCeEecCCCCCCC
Confidence            345678999999999999998 5999999999999999999985  3789999987544322222235666666555578


Q ss_pred             ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028260          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (211)
Q Consensus       123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (211)
                      +..+++.|++++.  .+++++++||+||+++++++.+++.+..
T Consensus        80 ~~~si~~~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~  120 (200)
T PRK02726         80 PLVAFAQGLPQIK--TEWVLLLACDLPRLTVDVLQEWLQQLEN  120 (200)
T ss_pred             hHHHHHHHHHhCC--CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence            8899999999884  5899999999999999999999998754

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=99.84  E-value=5.1e-20  Score=147.38  Aligned_cols=116  Identities=22%  Similarity=0.336  Sum_probs=93.7

Q ss_pred             EEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcH--HHHHHHHHcCCeEeeCCcccCCChHH
Q 028260           50 VVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDE--KIAECCQQFGADVIMTSESCRNGTER  126 (211)
Q Consensus        50 i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e--~i~~~~~~~~v~vi~~~~~~~g~~~s  126 (211)
                      +.+||||||.|+||+ +|++++++|+||++|+++++... .+++|+|+++++  .+.+.+..+++.++..+....|+..+
T Consensus         1 ~~~vIlAgG~s~R~g~~K~l~~~~g~~li~~~i~~l~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~   79 (186)
T cd04182           1 IAAIILAAGRSSRMGGNKLLLPLDGKPLLRHALDAALAA-GLSRVIVVLGAEADAVRAALAGLPVVVVINPDWEEGMSSS   79 (186)
T ss_pred             CeEEEECCCCCCCCCCCceeCeeCCeeHHHHHHHHHHhC-CCCcEEEECCCcHHHHHHHhcCCCeEEEeCCChhhCHHHH
Confidence            368999999999998 69999999999999999999986 589999998653  33333344455555554444567788


Q ss_pred             HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028260          127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (211)
Q Consensus       127 i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (211)
                      +..|++.+....|++++++||+||++++.++.+++.+.++
T Consensus        80 i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~  119 (186)
T cd04182          80 LAAGLEALPADADAVLILLADQPLVTAETLRALIDAFRED  119 (186)
T ss_pred             HHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhC
Confidence            9999998743368999999999999999999999988643

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=99.84  E-value=5.7e-20  Score=147.64  Aligned_cols=117  Identities=26%  Similarity=0.396  Sum_probs=96.5

Q ss_pred             EEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHH
Q 028260           51 VGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNE  129 (211)
Q Consensus        51 ~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~  129 (211)
                      .+||||||.|+||| +|++++++|+|||+|+++++...  +++|+|+++.+...  ...+++.++.++.+..|+..+++.
T Consensus         2 ~~iILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~l~~~--~~~iivv~~~~~~~--~~~~~~~~v~~~~~~~G~~~si~~   77 (181)
T cd02503           2 TGVILAGGKSRRMGGDKALLELGGKPLLEHVLERLKPL--VDEVVISANRDQER--YALLGVPVIPDEPPGKGPLAGILA   77 (181)
T ss_pred             cEEEECCCccccCCCCceeeEECCEEHHHHHHHHHHhh--cCEEEEECCCChHH--HhhcCCcEeeCCCCCCCCHHHHHH
Confidence            58999999999998 69999999999999999999875  78999999865433  344577777665556688899999


Q ss_pred             HHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEE
Q 028260          130 ALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST  173 (211)
Q Consensus       130 al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v  173 (211)
                      |++++  +.+++++++||+||+++++++.+++.+.++.+.+++.
T Consensus        78 ~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~  119 (181)
T cd02503          78 ALRAA--PADWVLVLACDMPFLPPELLERLLAAAEEGADAVVPK  119 (181)
T ss_pred             HHHhc--CCCeEEEEeCCcCCCCHHHHHHHHHhhccCCCEEEEe
Confidence            99987  3689999999999999999999999873334555443

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=99.83  E-value=8.9e-20  Score=152.01  Aligned_cols=150  Identities=21%  Similarity=0.304  Sum_probs=108.7

Q ss_pred             CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcC---CeE-eeCCcc
Q 028260           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG---ADV-IMTSES  119 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~---v~v-i~~~~~  119 (211)
                      +|++.+||||||.|+||+   +|+|++++|+||++|+++++.+++.+++|+|+++++.+..+.+.+.   ..+ +...  
T Consensus         1 ~~~~~~iILAaG~s~R~g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (227)
T PRK00155          1 MMMVYAIIPAAGKGSRMGADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVVAG--   78 (227)
T ss_pred             CCceEEEEEcCccccccCCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhccCCceEEeCC--
Confidence            578899999999999995   6999999999999999999998767999999998766554433221   112 1111  


Q ss_pred             cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee----CCC----CCCCCCCCeEE
Q 028260          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS----LKP----EDAFDPNRVKC  191 (211)
Q Consensus       120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~----~~~----~~~~d~~~~~~  191 (211)
                      ..+...++..|++.+. +.|.+++++||+||+++++++++++.+.++...++.....+    ++.    ....+|+.++.
T Consensus        79 ~~~~~~sv~~~l~~~~-~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~r~~~~~  157 (227)
T PRK00155         79 GAERQDSVLNGLQALP-DDDWVLVHDAARPFLTPDDIDRLIEAAEETGAAILAVPVKDTIKRSDDGGGIVDTPDRSGLWA  157 (227)
T ss_pred             cchHHHHHHHHHHhCC-CCCEEEEccCccCCCCHHHHHHHHHHHhhCCCEEEEEeccccEEEEcCCCceeecCChHHhee
Confidence            1134578889998874 46799999999999999999999999865432233333222    111    12345567888


Q ss_pred             EeCCCccE
Q 028260          192 VVDNHGYA  199 (211)
Q Consensus       192 v~~~~~~~  199 (211)
                      +|+|++|.
T Consensus       158 ~~~p~~f~  165 (227)
T PRK00155        158 AQTPQGFR  165 (227)
T ss_pred             eeCCccch
Confidence            88888774

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.82  E-value=1.5e-19  Score=149.45  Aligned_cols=147  Identities=18%  Similarity=0.311  Sum_probs=107.0

Q ss_pred             EEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCC--eE-eeCCcccCCCh
Q 028260           51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGA--DV-IMTSESCRNGT  124 (211)
Q Consensus        51 ~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v--~v-i~~~~~~~g~~  124 (211)
                      .+||||||.|+||+   +|+|++++|+|||+|+++++.+++.+++++|+++++....+...++.  .+ +....  .+..
T Consensus         1 ~aiIlAaG~s~R~~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   78 (217)
T TIGR00453         1 SAVIPAAGRGTRFGSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVARAVPKIVAGG--DTRQ   78 (217)
T ss_pred             CEEEEcCcccccCCCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcCCcEEEeCCC--chHH
Confidence            37999999999997   59999999999999999999987669999999987654433322221  11 22111  1245


Q ss_pred             HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee----CCC----CCCCCCCCeEEEeCCC
Q 028260          125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS----LKP----EDAFDPNRVKCVVDNH  196 (211)
Q Consensus       125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~----~~~----~~~~d~~~~~~v~~~~  196 (211)
                      .+++.|++.+. +.|++++++||+||+++++++.+++.+.++...+++....+    +++    ...++|+.++.+++|+
T Consensus        79 ~sl~~~l~~~~-~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~r~~~~~~~~p~  157 (217)
T TIGR00453        79 DSVRNGLKALK-DAEWVLVHDAARPFVPKELLDRLLEALRKAGAAILALPVADTLKRVEADGFIVETVDREGLWAAQTPQ  157 (217)
T ss_pred             HHHHHHHHhCC-CCCEEEEccCccCCCCHHHHHHHHHHHhhCCcEEEeEeccceEEEEcCCCceeecCChHHeEEEeCCC
Confidence            67888998872 46899999999999999999999998865433343333322    111    2466777899999998


Q ss_pred             ccEE
Q 028260          197 GYAI  200 (211)
Q Consensus       197 ~~~~  200 (211)
                      .|..
T Consensus       158 ~f~~  161 (217)
T TIGR00453       158 AFRT  161 (217)
T ss_pred             cccH
Confidence            8744

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=99.82  E-value=1.4e-19  Score=149.31  Aligned_cols=148  Identities=22%  Similarity=0.360  Sum_probs=108.2

Q ss_pred             EEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHH--Hc--CCeE-eeCCcccCC
Q 028260           51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ--QF--GADV-IMTSESCRN  122 (211)
Q Consensus        51 ~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~--~~--~v~v-i~~~~~~~g  122 (211)
                      .+||||||.|+||+   +|++++++|+|||+|+++++...+.+++|+|+++++.......  .+  ...+ +....  .+
T Consensus         2 ~~vILAaG~s~R~~~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   79 (218)
T cd02516           2 AAIILAAGSGSRMGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGLSKVVKIVEGG--AT   79 (218)
T ss_pred             EEEEECCcccccCCCCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhcccCCCeEEECCc--hH
Confidence            58999999999997   5999999999999999999998766899999998654333321  11  1122 22221  24


Q ss_pred             ChHHHHHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-C---CC----CCCCCCCCeEEEe
Q 028260          123 GTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-L---KP----EDAFDPNRVKCVV  193 (211)
Q Consensus       123 ~~~si~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~---~~----~~~~d~~~~~~v~  193 (211)
                      ...++..|++++. .+.+++++++||+||+++++++.+++.+.++...+...+..+ +   +.    ....+|+.++.++
T Consensus        80 ~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~  159 (218)
T cd02516          80 RQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPVTDTIKRVDDDGVVVETLDREKLWAAQ  159 (218)
T ss_pred             HHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEeccccEEEecCCCceeecCChHHhhhhc
Confidence            4678999999873 247899999999999999999999999865433233333222 1   11    2467888899999


Q ss_pred             CCCccEE
Q 028260          194 DNHGYAI  200 (211)
Q Consensus       194 ~~~~~~~  200 (211)
                      .|+.|..
T Consensus       160 ~P~~f~~  166 (218)
T cd02516         160 TPQAFRL  166 (218)
T ss_pred             CCCcccH
Confidence            9987643

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=99.82  E-value=2e-19  Score=146.00  Aligned_cols=118  Identities=17%  Similarity=0.237  Sum_probs=92.4

Q ss_pred             EEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH--HHHHH----HHcCCeEeeCCcccCCC
Q 028260           51 VGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK--IAECC----QQFGADVIMTSESCRNG  123 (211)
Q Consensus        51 ~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~--i~~~~----~~~~v~vi~~~~~~~g~  123 (211)
                      .+||||||.|+||| +|++++++|+|||+|+++.+.+. .+++++|+++++.  +..+.    ...++.++..++...|+
T Consensus         2 ~~vILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (190)
T TIGR03202         2 VAIYLAAGQSRRMGENKLALPLGETTLGSASLKTALSS-RLSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRDACEGQ   80 (190)
T ss_pred             eEEEEcCCccccCCCCceeceeCCccHHHHHHHHHHhC-CCCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCChhhhH
Confidence            58999999999998 69999999999999999887765 5899999986432  11111    12245555555555677


Q ss_pred             hHHHHHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCe
Q 028260          124 TERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA  169 (211)
Q Consensus       124 ~~si~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~  169 (211)
                      ..++..|++++. .+.|++++++||+||+++++++.+++.+.++++.
T Consensus        81 ~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~  127 (190)
T TIGR03202        81 AHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDD  127 (190)
T ss_pred             HHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCC
Confidence            889999999863 2468999999999999999999999988654443

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=99.81  E-value=3.9e-19  Score=143.12  Aligned_cols=115  Identities=20%  Similarity=0.286  Sum_probs=92.0

Q ss_pred             EEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcCCeEeeCCcccCCChHHH
Q 028260           52 GIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSESCRNGTERC  127 (211)
Q Consensus        52 aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~v~vi~~~~~~~g~~~si  127 (211)
                      +||||||.|+||+ +|++++++|+||++|+++++.+. .+++++|+++++.   +..++..+++.++.++....|+..++
T Consensus         2 ~iIla~G~s~R~g~~K~ll~~~g~pll~~~i~~l~~~-~~~~iivv~~~~~~~~~~~~~~~~~v~~v~~~~~~~g~~~si   80 (188)
T TIGR03310         2 AIILAAGLSSRMGQNKLLLPYKGKTILEHVVDNALRL-FFDEVILVLGHEADELVALLANHSNITLVHNPQYAEGQSSSI   80 (188)
T ss_pred             eEEECCCCcccCCCCceecccCCeeHHHHHHHHHHHc-CCCcEEEEeCCcHHHHHHHhccCCCeEEEECcChhcCHHHHH
Confidence            7999999999996 69999999999999999999987 5899988887544   33333345677766654445777889


Q ss_pred             HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCC
Q 028260          128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD  168 (211)
Q Consensus       128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d  168 (211)
                      ..|++. ..+.+++++++||+||++++.++.+++.+....+
T Consensus        81 ~~~l~~-~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~  120 (188)
T TIGR03310        81 KLGLEL-PVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKND  120 (188)
T ss_pred             HHHhcC-CCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCC
Confidence            889882 2246899999999999999999999998764443

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=99.81  E-value=5.4e-19  Score=142.53  Aligned_cols=112  Identities=21%  Similarity=0.325  Sum_probs=90.7

Q ss_pred             EEEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCC-cccCCChHH
Q 028260           50 VVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTS-ESCRNGTER  126 (211)
Q Consensus        50 i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~-~~~~g~~~s  126 (211)
                      +.+||||||.|+|||  +|++++++|+|||+|+++++..  .+++|||+++.+.........++.++... ....|+..+
T Consensus         1 ~~~iILAgG~s~Rmg~~~K~l~~i~g~pll~~~l~~l~~--~~~~ivv~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~s   78 (186)
T TIGR02665         1 ISGVILAGGRARRMGGRDKGLVELGGKPLIEHVLARLRP--QVSDLAISANRNPERYAQAGFGLPVVPDALADFPGPLAG   78 (186)
T ss_pred             CeEEEEcCCccccCCCCCCceeEECCEEHHHHHHHHHHh--hCCEEEEEcCCCHHHHhhccCCCcEEecCCCCCCCCHHH
Confidence            368999999999997  6999999999999999999975  48999999875442222223456665543 234677889


Q ss_pred             HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028260          127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (211)
Q Consensus       127 i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (211)
                      ++.|++.+  +.+++++++||+||++++.++.+++.+.+
T Consensus        79 i~~al~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  115 (186)
T TIGR02665        79 ILAGLRWA--GTDWVLTVPCDTPFLPEDLVARLAAALEA  115 (186)
T ss_pred             HHHHHHhc--CCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence            99999987  46899999999999999999999998864

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=99.81  E-value=9.2e-19  Score=142.48  Aligned_cols=118  Identities=25%  Similarity=0.364  Sum_probs=94.1

Q ss_pred             CCcEEEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcc-cCCC
Q 028260           47 RSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSES-CRNG  123 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~-~~g~  123 (211)
                      ||++.+||||||.|+||+  +|++++++|+|||+|+++.+.  ..+++|+|+++.+. .. ....++.++.+... ..|+
T Consensus         1 ~~~~~~vILA~G~s~Rm~~~~K~ll~~~g~~ll~~~i~~l~--~~~~~i~vv~~~~~-~~-~~~~~~~~v~~~~~~~~g~   76 (193)
T PRK00317          1 MPPITGVILAGGRSRRMGGVDKGLQELNGKPLIQHVIERLA--PQVDEIVINANRNL-AR-YAAFGLPVIPDSLADFPGP   76 (193)
T ss_pred             CCCceEEEEcCCCcccCCCCCCceeEECCEEHHHHHHHHHh--hhCCEEEEECCCCh-HH-HHhcCCcEEeCCCCCCCCC
Confidence            578899999999999994  699999999999999999998  36899999887532 22 23456666554332 3577


Q ss_pred             hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeE
Q 028260          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV  170 (211)
Q Consensus       124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~v  170 (211)
                      ..+++.|++..  +.+++++++||+||++++.++.+++.+.+....+
T Consensus        77 ~~~i~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~  121 (193)
T PRK00317         77 LAGILAGLKQA--RTEWVLVVPCDTPFIPPDLVARLAQAAGKDDADV  121 (193)
T ss_pred             HHHHHHHHHhc--CCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCcE
Confidence            88999999975  4689999999999999999999999875443333

>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=99.80  E-value=4.9e-19  Score=144.92  Aligned_cols=131  Identities=24%  Similarity=0.359  Sum_probs=113.7

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeE-eeCCcccCCCh-
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADV-IMTSESCRNGT-  124 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~v-i~~~~~~~g~~-  124 (211)
                      +|+..|||||+|.|+|.++|++..++|+|||.|+|+++.+++.||+|||.+|.++|.+.++++|+++ +.+|++++... 
T Consensus         1 ~~~~iAiIpAR~gSKgI~~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~Il~~A~~ygak~~~~Rp~~LA~D~a   80 (228)
T COG1083           1 MMKNIAIIPARGGSKGIKNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEEAKKYGAKVFLKRPKELASDRA   80 (228)
T ss_pred             CcceEEEEeccCCCCcCCccchHHhCCcchHHHHHHHHhcCCccceEEEcCCcHHHHHHHHHhCccccccCChhhccCch
Confidence            5788999999999999999999999999999999999999999999999999999999999999999 78887766543 


Q ss_pred             HH---HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHH-hCCCeEEEEeeee
Q 028260          125 ER---CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ-AAPDAVFSTAVTS  177 (211)
Q Consensus       125 ~s---i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~-~~~d~vv~v~~~~  177 (211)
                      .+   +.++++......+.++.+.++.||++..+|++.++.+. +..++++++...+
T Consensus        81 st~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e  137 (228)
T COG1083          81 STIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECE  137 (228)
T ss_pred             hHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecc
Confidence            33   44555655545678999999999999999999999995 4578898877655

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=99.80  E-value=9.3e-19  Score=143.47  Aligned_cols=118  Identities=22%  Similarity=0.387  Sum_probs=95.7

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHH
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTER  126 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~s  126 (211)
                      ++++.+||||||+|+||.+|.+++++|+||++|++++++..  ++.+||+.+... .. ...++++++....+..|++.+
T Consensus         2 ~~~~~~vILAGG~srRm~dK~l~~~~g~~lie~v~~~L~~~--~~~vvi~~~~~~-~~-~~~~g~~vv~D~~~~~GPL~G   77 (192)
T COG0746           2 MTPMTGVILAGGKSRRMRDKALLPLNGRPLIEHVIDRLRPQ--VDVVVISANRNQ-GR-YAEFGLPVVPDELPGFGPLAG   77 (192)
T ss_pred             CCCceEEEecCCccccccccccceeCCeEHHHHHHHHhccc--CCEEEEeCCCch-hh-hhccCCceeecCCCCCCCHHH
Confidence            45788999999999999669999999999999999999864  565555554332 22 345678887766555588999


Q ss_pred             HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeE
Q 028260          127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV  170 (211)
Q Consensus       127 i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~v  170 (211)
                      ++.|+++..  .+++++++||+||++++.++.+++...+..+.+
T Consensus        78 i~~al~~~~--~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~  119 (192)
T COG0746          78 ILAALRHFG--TEWVLVLPCDMPFIPPELVERLLSAFKQTGAAI  119 (192)
T ss_pred             HHHHHHhCC--CCeEEEEecCCCCCCHHHHHHHHHhhcccCCcE
Confidence            999999984  789999999999999999999999987544333

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=99.79  E-value=2.3e-18  Score=140.39  Aligned_cols=119  Identities=25%  Similarity=0.346  Sum_probs=102.0

Q ss_pred             CCcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHH---HHHHcCCeEeeCCcccCC
Q 028260           47 RSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAE---CCQQFGADVIMTSESCRN  122 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~---~~~~~~v~vi~~~~~~~g  122 (211)
                      ++++.+||||+|.|+||| +|+|++++|+|++.|+++++.++ .+++++|+++++....   .....++.++.+++..+|
T Consensus         3 ~~~v~~VvLAAGrssRmG~~KlLap~~g~plv~~~~~~a~~a-~~~~vivV~g~~~~~~~~a~~~~~~~~~v~npd~~~G   81 (199)
T COG2068           3 PSTVAAVVLAAGRSSRMGQPKLLAPLDGKPLVRASAETALSA-GLDRVIVVTGHRVAEAVEALLAQLGVTVVVNPDYAQG   81 (199)
T ss_pred             CcceEEEEEcccccccCCCcceecccCCCcHHHHHHHHHHhc-CCCeEEEEeCcchhhHHHhhhccCCeEEEeCcchhhh
Confidence            457899999999999998 59999999999999999999987 6999999998652222   223456788888877788


Q ss_pred             ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028260          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (211)
Q Consensus       123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (211)
                      ..+|+.+|+..+..+.|.++++.+|||++++++++++++.+...
T Consensus        82 ls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~  125 (199)
T COG2068          82 LSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR  125 (199)
T ss_pred             HhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence            88999999999864457999999999999999999999999765

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=99.78  E-value=5e-18  Score=141.97  Aligned_cols=115  Identities=35%  Similarity=0.569  Sum_probs=90.8

Q ss_pred             EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc----HHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028260           52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD----EKIAECCQQFGADVIMTSESCRNGTERC  127 (211)
Q Consensus        52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~----e~i~~~~~~~~v~vi~~~~~~~g~~~si  127 (211)
                      +||||||.|+||++|++++++|+||++|+++++.+++.+++++|+++.    +.+..++...++.++.++..  +...+.
T Consensus         2 aiIlA~G~S~R~~~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~~v~~v~~~~~--~~l~~~   79 (233)
T cd02518           2 AIIQARMGSTRLPGKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKLGVKVFRGSEE--DVLGRY   79 (233)
T ss_pred             EEEeeCCCCCCCCCCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHcCCeEEECCch--hHHHHH
Confidence            799999999999999999999999999999999987558999999974    45666666667777766532  333334


Q ss_pred             HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeE
Q 028260          128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAV  170 (211)
Q Consensus       128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~v  170 (211)
                      ..+++..  +.|++++++||+||+++++++++++.+.. ..+.+
T Consensus        80 ~~~~~~~--~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~  121 (233)
T cd02518          80 YQAAEEY--NADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT  121 (233)
T ss_pred             HHHHHHc--CCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence            4444433  46899999999999999999999998864 33444

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=99.76  E-value=2.5e-17  Score=133.98  Aligned_cols=112  Identities=21%  Similarity=0.245  Sum_probs=89.6

Q ss_pred             EEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCCChHH
Q 028260           51 VGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTER  126 (211)
Q Consensus        51 ~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g~~~s  126 (211)
                      .+||||||+|+||+  +|++++++|+|||+|+++++.++ .+++++|+++  .+.++.+++.....+ .. ....|...+
T Consensus         2 ~aIILAgG~gsRmg~~~K~Ll~i~GkplI~~vi~~l~~~-~i~~I~Vv~~~~~~~~~~~l~~~~~~~-~~-~~g~G~~~~   78 (183)
T TIGR00454         2 DALIMAGGKGTRLGGVEKPLIEVCGRCLIDHVLSPLLKS-KVNNIIIATSPHTPKTEEYINSAYKDY-KN-ASGKGYIED   78 (183)
T ss_pred             eEEEECCccCccCCCCCceEeEECCEEHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHhhcCcEE-Ee-cCCCCHHHH
Confidence            48999999999996  59999999999999999999987 4899999886  355666665434333 22 234466778


Q ss_pred             HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028260          127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (211)
Q Consensus       127 i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (211)
                      +..|++.+. ..++++++.||+||+++++++.+++++...
T Consensus        79 l~~al~~~~-~~~~~lv~~~D~P~i~~~~i~~li~~~~~~  117 (183)
T TIGR00454        79 LNECIGELY-FSEPFLVVSSDLINLRSKIIDSIVDYYYCI  117 (183)
T ss_pred             HHHHhhccc-CCCCEEEEeCCcCcCCHHHHHHHHHHHHhc
Confidence            888988653 357899999999999999999999998543

At this time this gene appears to be present only in Archea

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=99.76  E-value=5.7e-17  Score=134.35  Aligned_cols=144  Identities=22%  Similarity=0.348  Sum_probs=106.5

Q ss_pred             EEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCCChHH
Q 028260           52 GIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTER  126 (211)
Q Consensus        52 aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g~~~s  126 (211)
                      |||||||.|+||+   +|+|++++|+|||+|+++++.++ ++++++|+++  .+.+.+++..+++.++..+ ...|...+
T Consensus         1 aiIlaaG~g~R~~~~~pK~l~~v~gkpli~~~i~~l~~~-~i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~-~~~g~~~a   78 (229)
T cd02540           1 AVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVLDAARAL-GPDRIVVVVGHGAEQVKKALANPNVEFVLQE-EQLGTGHA   78 (229)
T ss_pred             CEEEeCCCCccCCCCCChhcceeCCccHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhCCCCcEEEECC-CCCCCHHH
Confidence            6899999999995   59999999999999999999988 4888877775  4566666666677766544 33566788


Q ss_pred             HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCCCCCCCCC-CeEEEeCCCccEEeeec
Q 028260          127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIYFSR  204 (211)
Q Consensus       127 i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~~~~~d~~-~~~~v~~~~~~~~~~~~  204 (211)
                      +.+|++.+..+.+.+++++||+||++.+.+.++++.+.+. .+.++.  .++..     ++. .-.+..+++|.+..|..
T Consensus        79 i~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~--~~~~~-----~p~~~~~~~~~~~~~v~~~~e  151 (229)
T cd02540          79 VKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVL--TAELE-----DPTGYGRIIRDGNGKVLRIVE  151 (229)
T ss_pred             HHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEE--EEEcC-----CCCCccEEEEcCCCCEEEEEE
Confidence            9999998842257899999999999999999999988643 344433  23321     222 12344566667666664

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=99.75  E-value=1.7e-17  Score=148.33  Aligned_cols=113  Identities=15%  Similarity=0.129  Sum_probs=93.3

Q ss_pred             CCCcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCCh
Q 028260           46 FRSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGT  124 (211)
Q Consensus        46 ~~m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~  124 (211)
                      .++++.+||||||+|+||| +|++++++|+|||+|+++++..  .+++++|+++++....+ ..+++.++.++.+..|+.
T Consensus       171 ~~~~i~~iILAGG~SsRmG~~K~ll~~~Gk~ll~~~l~~l~~--~~~~vvV~~~~~~~~~~-~~~~v~~i~d~~~~~Gpl  247 (369)
T PRK14490        171 EEVPLSGLVLAGGRSSRMGSDKALLSYHESNQLVHTAALLRP--HCQEVFISCRAEQAEQY-RSFGIPLITDSYLDIGPL  247 (369)
T ss_pred             ccCCceEEEEcCCccccCCCCcEEEEECCccHHHHHHHHHHh--hCCEEEEEeCCchhhHH-hhcCCcEEeCCCCCCCcH
Confidence            3456889999999999998 5999999999999999999985  37889888876543333 345777776655556888


Q ss_pred             HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHH
Q 028260          125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL  163 (211)
Q Consensus       125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~  163 (211)
                      .++..|+++.  +.+++++++|||||+++++++.+++..
T Consensus       248 ~gi~~al~~~--~~~~~lv~~~DmP~i~~~~i~~L~~~~  284 (369)
T PRK14490        248 GGLLSAQRHH--PDAAWLVVACDLPFLDEATLQQLVEGR  284 (369)
T ss_pred             HHHHHHHHhC--CCCcEEEEeCCcCCCCHHHHHHHHHhc
Confidence            8999998876  357899999999999999999999875

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.74  E-value=2.8e-17  Score=134.82  Aligned_cols=109  Identities=18%  Similarity=0.216  Sum_probs=86.5

Q ss_pred             CCCCCcEEEEEecCCCCCCCC-CccccccCC-eehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeC-Cccc
Q 028260           44 KNFRSRVVGIIPARFASSRFE-GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMT-SESC  120 (211)
Q Consensus        44 ~~~~m~i~aIIlA~G~ssRlg-~K~ll~l~G-kpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~-~~~~  120 (211)
                      |...+++.+||||||.|+||| +|++++++| +|||+|+++++...  +++|+|+++++.+     .+...++.+ ....
T Consensus         3 ~~~~~~i~~vILAgG~s~RmG~~K~ll~~~g~~~ll~~~i~~l~~~--~~~vvvv~~~~~~-----~~~~~~v~d~~~~~   75 (196)
T PRK00560          3 NPMIDNIPCVILAGGKSSRMGENKALLPFGSYSSLLEYQYTRLLKL--FKKVYISTKDKKF-----EFNAPFLLEKESDL   75 (196)
T ss_pred             CccccCceEEEECCcccccCCCCceEEEeCCCCcHHHHHHHHHHHh--CCEEEEEECchhc-----ccCCcEEecCCCCC
Confidence            445678999999999999997 599999999 99999999999864  7899999876322     234555544 2233


Q ss_pred             CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHH
Q 028260          121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK  161 (211)
Q Consensus       121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~  161 (211)
                      .|+..++..++...  +.+++++++||+|++++++++.++.
T Consensus        76 ~gpl~gi~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~  114 (196)
T PRK00560         76 FSPLFGIINAFLTL--QTPEIFFISVDTPFVSFESIKKLCG  114 (196)
T ss_pred             CCcHHHHHHHHHhc--CCCeEEEEecCcCcCCHHHHHHHHh
Confidence            46667777777765  4689999999999999999999854

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.74  E-value=1.4e-16  Score=146.94  Aligned_cols=153  Identities=18%  Similarity=0.197  Sum_probs=113.6

Q ss_pred             CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccC
Q 028260           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCR  121 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~  121 (211)
                      .|++.+||||||.|+||+   +|+|++++|+|||+|+++++.++ ++++++|++++  +.+.+++...++.++.. +...
T Consensus         5 ~~~~~avILAaG~gtRl~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~~~i~~v~~-~~~~   82 (481)
T PRK14358          5 TRPLDVVILAAGQGTRMKSALPKVLHPVAGRPMVAWAVKAARDL-GARKIVVVTGHGAEQVEAALQGSGVAFARQ-EQQL   82 (481)
T ss_pred             cCCceEEEECCCCCCcCCCCCCceecEECCeeHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhccCCcEEecC-CCcC
Confidence            367889999999999995   69999999999999999999987 68999998874  55666655556665543 3344


Q ss_pred             CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCC-CeEEEeCCCccEE
Q 028260          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAI  200 (211)
Q Consensus       122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~-~~~~v~~~~~~~~  200 (211)
                      |...+++.+++.+....+.++++++|+||+++..++++++.+.++. ..+++...+..     |+. .-.+..|.+|.+.
T Consensus        83 Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~-~~~ti~~~~~~-----~~~~yG~v~~d~~g~v~  156 (481)
T PRK14358         83 GTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQG-SAMTILTGELP-----DATGYGRIVRGADGAVE  156 (481)
T ss_pred             CcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcC-CeEEEEEEEcC-----CCCCceEEEECCCCCEE
Confidence            6677888888887422345899999999999999999999886543 33333333322     222 3445667788888


Q ss_pred             eeecCCC
Q 028260          201 YFSRGLI  207 (211)
Q Consensus       201 ~~~~~~~  207 (211)
                      .|.+++.
T Consensus       157 ~~~Ek~~  163 (481)
T PRK14358        157 RIVEQKD  163 (481)
T ss_pred             EEEECCC
Confidence            8887643

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.73  E-value=1.5e-16  Score=144.75  Aligned_cols=125  Identities=22%  Similarity=0.296  Sum_probs=96.7

Q ss_pred             CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeE-eeCCccc
Q 028260           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADV-IMTSESC  120 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~v-i~~~~~~  120 (211)
                      ||++.+||||||.|+||+   +|+|++++|+|||+|+++++..+ ++++++|+++  .+++.+++..++..+ +......
T Consensus         3 ~~~~~aiILAaG~gsR~~~~~pK~ll~v~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~~~~~~~~~~~~~~   81 (446)
T PRK14353          3 DRTCLAIILAAGEGTRMKSSLPKVLHPVAGRPMLAHVLAAAASL-GPSRVAVVVGPGAEAVAAAAAKIAPDAEIFVQKER   81 (446)
T ss_pred             cccceEEEEcCCCCCccCCCCCcccCEECCchHHHHHHHHHHhC-CCCcEEEEECCCHHHHHHHhhccCCCceEEEcCCC
Confidence            567899999999999996   69999999999999999999988 5889888875  456666665543222 2222234


Q ss_pred             CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      .|...++..+++.+....+++++++||+||++++.++.+++.+.+..+.++.
T Consensus        82 ~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~~i~  133 (446)
T PRK14353         82 LGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRERLADGADVVVL  133 (446)
T ss_pred             CCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcEEEE
Confidence            4667788888888742357899999999999999999999866555565544

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.72  E-value=2.5e-16  Score=143.73  Aligned_cols=146  Identities=21%  Similarity=0.274  Sum_probs=106.3

Q ss_pred             cEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccCCC
Q 028260           49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNG  123 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~g~  123 (211)
                      .+.+||||||.|+||+   +|+|++++|+|||+|+++++... .+++++|+++.  +.+.+++...++.++.++ ...|.
T Consensus         5 ~~~aiILAaG~gtR~~~~~pK~l~~i~gkpli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~~~~~v~~~-~~~Gt   82 (456)
T PRK14356          5 TTGALILAAGKGTRMHSDKPKVLQTLLGEPMLRFVYRALRPL-FGDNVWTVVGHRADMVRAAFPDEDARFVLQE-QQLGT   82 (456)
T ss_pred             ceeEEEEcCCCCccCCCCCCceecccCCCcHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhccccCceEEEcC-CCCCc
Confidence            4789999999999995   69999999999999999999986 57888887753  555555544456665553 34566


Q ss_pred             hHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEee
Q 028260          124 TERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF  202 (211)
Q Consensus       124 ~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~  202 (211)
                      ..++..+++.+.. +.++++++++|+||++.+.++.+++.+. ..+.++..  .++     .|++.+.++..++|++..|
T Consensus        83 ~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~-~~~~~l~~--~~~-----~~~~~~g~v~~~~g~V~~~  154 (456)
T PRK14356         83 GHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA-GADLAFMT--LTL-----PDPGAYGRVVRRNGHVAAI  154 (456)
T ss_pred             HHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh-cCCEEEEE--EEc-----CCCCCceEEEEcCCeEEEE
Confidence            6788888887742 3578999999999999999999998875 34444332  231     1333444444466776666


Q ss_pred             ec
Q 028260          203 SR  204 (211)
Q Consensus       203 ~~  204 (211)
                      ..
T Consensus       155 ~e  156 (456)
T PRK14356        155 VE  156 (456)
T ss_pred             EE
Confidence            54

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

Probab=99.72  E-value=9.5e-17  Score=127.98  Aligned_cols=106  Identities=32%  Similarity=0.473  Sum_probs=94.5

Q ss_pred             EEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028260           52 GIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERC  127 (211)
Q Consensus        52 aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g~~~si  127 (211)
                      +||+|||+|+||+  .|++++++|||||.|+++++++  .+++|+|+++  .+.+++++...+++++..+..  |...-+
T Consensus         3 ~iiMAGGrGtRmg~~EKPlleV~GkpLI~~v~~al~~--~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG~--GYv~Dl   78 (177)
T COG2266           3 AIIMAGGRGTRMGRPEKPLLEVCGKPLIDRVLEALRK--IVDEIIVAISPHTPKTKEYLESVGVKVIETPGE--GYVEDL   78 (177)
T ss_pred             eEEecCCcccccCCCcCcchhhCCccHHHHHHHHHHh--hcCcEEEEeCCCCHhHHHHHHhcCceEEEcCCC--ChHHHH
Confidence            7999999999998  3999999999999999999997  5899998885  588899998889999887643  667788


Q ss_pred             HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHH
Q 028260          128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ  164 (211)
Q Consensus       128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~  164 (211)
                      ..+++++.   ..+|++++|.||+++.+|+.+++.+.
T Consensus        79 ~~al~~l~---~P~lvvsaDLp~l~~~~i~~vi~~~~  112 (177)
T COG2266          79 RFALESLG---TPILVVSADLPFLNPSIIDSVIDAAA  112 (177)
T ss_pred             HHHHHhcC---CceEEEecccccCCHHHHHHHHHHHh
Confidence            99999984   38999999999999999999999986

>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional

Probab=99.71  E-value=1.6e-16  Score=140.97  Aligned_cols=113  Identities=12%  Similarity=0.116  Sum_probs=91.2

Q ss_pred             CcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHH
Q 028260           48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTER  126 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~s  126 (211)
                      .++.+||||||+|+||| +|+|++++|+||++|+++.+..  .+++|+|+++++..... ....+.++.+..+..|++.+
T Consensus       159 ~~i~~IILAGGkSsRMG~dKaLL~~~GkpLl~~~ie~l~~--~~~~ViVv~~~~~~~~~-~~~~v~~I~D~~~~~GPlag  235 (346)
T PRK14500        159 TPLYGLVLTGGKSRRMGKDKALLNYQGQPHAQYLYDLLAK--YCEQVFLSARPSQWQGT-PLENLPTLPDRGESVGPISG  235 (346)
T ss_pred             CCceEEEEeccccccCCCCcccceeCCccHHHHHHHHHHh--hCCEEEEEeCchHhhhc-cccCCeEEeCCCCCCChHHH
Confidence            46889999999999998 5999999999999999999986  48899998876542221 11134555555556789999


Q ss_pred             HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028260          127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (211)
Q Consensus       127 i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (211)
                      ++.|++...  .+.+++++||+||++++.+..+++.+..
T Consensus       236 I~aaL~~~~--~~~~lVl~cDmP~l~~~~l~~L~~~~~~  272 (346)
T PRK14500        236 ILTALQSYP--GVNWLVVACDLAYLNSETVEKLLAHYRQ  272 (346)
T ss_pred             HHHHHHhCC--CCCEEEEECCcCCCCHHHHHHHHHhhhc
Confidence            999999863  3567999999999999999999998754

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.69  E-value=9.8e-16  Score=136.49  Aligned_cols=150  Identities=21%  Similarity=0.266  Sum_probs=112.6

Q ss_pred             CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHc-CCeEeeCCcccC
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-GADVIMTSESCR  121 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~-~v~vi~~~~~~~  121 (211)
                      |+..+||||+|+|+||.   +|-|++++|+||++|+++++... ..++++++.+  .+.+++.+.+. .+.++...+ ..
T Consensus         1 ~~~~~vILAAGkGTRMkS~lPKVLH~vaGkpMl~hVi~~a~~l-~~~~i~vVvGh~ae~V~~~~~~~~~v~~v~Q~e-ql   78 (460)
T COG1207           1 MSLSAVILAAGKGTRMKSDLPKVLHPVAGKPMLEHVIDAARAL-GPDDIVVVVGHGAEQVREALAERDDVEFVLQEE-QL   78 (460)
T ss_pred             CCceEEEEecCCCccccCCCcccchhccCccHHHHHHHHHhhc-CcceEEEEEcCCHHHHHHHhccccCceEEEecc-cC
Confidence            45679999999999996   59999999999999999999987 5888888775  46666665533 467766543 44


Q ss_pred             CChHHHHHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCC-CeEEEeCCCccE
Q 028260          122 NGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYA  199 (211)
Q Consensus       122 g~~~si~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~-~~~~v~~~~~~~  199 (211)
                      |+..++..|+..+. .....+||+.+|.||++.++++.+++.+....+ -+++....     .-||. +-|.+.+.+|.+
T Consensus        79 GTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~-~~tvLt~~-----~~dP~GYGRIvr~~~g~V  152 (460)
T COG1207          79 GTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGA-AATVLTAE-----LDDPTGYGRIVRDGNGEV  152 (460)
T ss_pred             ChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCC-ceEEEEEE-----cCCCCCcceEEEcCCCcE
Confidence            66678889999884 334479999999999999999999988864322 23333333     22454 467888888887


Q ss_pred             EeeecC
Q 028260          200 IYFSRG  205 (211)
Q Consensus       200 ~~~~~~  205 (211)
                      ....++
T Consensus       153 ~~IVE~  158 (460)
T COG1207         153 TAIVEE  158 (460)
T ss_pred             EEEEEc
Confidence            766544

>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]

Probab=99.69  E-value=3.2e-16  Score=129.03  Aligned_cols=120  Identities=36%  Similarity=0.583  Sum_probs=103.5

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcC----cHHHHHHHHHcCCeEeeCCcccCC
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD----DEKIAECCQQFGADVIMTSESCRN  122 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~----~e~i~~~~~~~~v~vi~~~~~~~g  122 (211)
                      |+++.+||.|+-.|+|+++|.|++++|+|||++.+++++.+..++++||.|.    ++.+++++...|+.++..+++  +
T Consensus         1 ~~~I~~IiQARmgStRLpgKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~vfrGs~~--d   78 (241)
T COG1861           1 MSMILVIIQARMGSTRLPGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGFYVFRGSEE--D   78 (241)
T ss_pred             CCcEEEEeeecccCccCCcchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHcCeeEecCCHH--H
Confidence            5679999999999999999999999999999999999999999999999985    345777888889988876433  5


Q ss_pred             ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHH-HhCCCeE
Q 028260          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL-QAAPDAV  170 (211)
Q Consensus       123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~-~~~~d~v  170 (211)
                      -+.++..+++..  +.+.++-+.+|.||++++.++.+++.+ .++.|++
T Consensus        79 VL~Rf~~a~~a~--~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~  125 (241)
T COG1861          79 VLQRFIIAIKAY--SADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV  125 (241)
T ss_pred             HHHHHHHHHHhc--CCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence            567888888887  467999999999999999999999987 4555654

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.68  E-value=1.2e-15  Score=139.49  Aligned_cols=149  Identities=15%  Similarity=0.176  Sum_probs=108.4

Q ss_pred             CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccC
Q 028260           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCR  121 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~  121 (211)
                      ||++.+||||||.|+||.   +|+|++++|+|||+|+++.+..+ ++++++|+++.  +.+++.+....+.++..+ ...
T Consensus         3 ~~~~~aiIlAaG~gtRl~~~~pK~l~~i~gkpli~~~i~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~~~i~~~-~~~   80 (456)
T PRK09451          3 NSAMSVVILAAGKGTRMYSDLPKVLHTLAGKPMVQHVIDAANEL-GAQHVHLVYGHGGDLLKQTLADEPLNWVLQA-EQL   80 (456)
T ss_pred             CCCceEEEEcCCCCCcCCCCCChhcceeCChhHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhhccCCcEEEECC-CCC
Confidence            567889999999999995   59999999999999999999987 58999988863  455555543345555543 345


Q ss_pred             CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEe
Q 028260          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY  201 (211)
Q Consensus       122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~  201 (211)
                      |...+++.+++.+. +.++++++++|+|+++++.++++++.+.+. +..  +...+.+     ++..+-++.+.++++..
T Consensus        81 Gt~~al~~a~~~l~-~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~-~~~--i~~~~~~-----~~~~yG~v~~~~g~V~~  151 (456)
T PRK09451         81 GTGHAMQQAAPFFA-DDEDILMLYGDVPLISVETLQRLRDAKPQG-GIG--LLTVKLD-----NPTGYGRITRENGKVVG  151 (456)
T ss_pred             CcHHHHHHHHHhhc-cCCcEEEEeCCcccCCHHHHHHHHHHhhcC-CEE--EEEEEcC-----CCCCceEEEecCCeEEE
Confidence            66778888888774 357899999999999999999999876543 322  2222221     22222234556778888


Q ss_pred             eecCC
Q 028260          202 FSRGL  206 (211)
Q Consensus       202 ~~~~~  206 (211)
                      |.+++
T Consensus       152 ~~EKp  156 (456)
T PRK09451        152 IVEQK  156 (456)
T ss_pred             EEECC
Confidence            88875

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.68  E-value=2.5e-15  Score=138.51  Aligned_cols=152  Identities=21%  Similarity=0.245  Sum_probs=106.2

Q ss_pred             cEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeE-eeCCcccCC
Q 028260           49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADV-IMTSESCRN  122 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~v-i~~~~~~~g  122 (211)
                      ++.+||||||.|+||+   +|+|++++|+|||+|+++++.++ ++++++|+++  .+++.+.+......+ +..++...|
T Consensus         4 ~~~avILAaG~gtRm~~~~pK~llpi~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~~~~~~~~~~~~~~G   82 (482)
T PRK14352          4 PTAVIVLAAGAGTRMRSDTPKVLHTLAGRSMLGHVLHAAAGL-APQHLVVVVGHDRERVAPAVAELAPEVDIAVQDEQPG   82 (482)
T ss_pred             CceEEEEcCCCCCcCCCCCCceeceeCCccHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHHhhccCCccEEEeCCCCCC
Confidence            4679999999999996   59999999999999999999987 5788887775  345555554432222 223333445


Q ss_pred             ChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEe
Q 028260          123 GTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY  201 (211)
Q Consensus       123 ~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~  201 (211)
                      ...+++.+++.+.. ..+++++++||+||+++++++++++.+.+.. ..+++...++.+..    ..-.+..+++|++..
T Consensus        83 t~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~-~~~~v~~~~~~~p~----~yg~~~~~~~g~V~~  157 (482)
T PRK14352         83 TGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEG-NAVTVLTTTLDDPT----GYGRILRDQDGEVTA  157 (482)
T ss_pred             cHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcC-CeEEEEEeecCCCC----CCCEEEECCCCCEEE
Confidence            56789999998742 2467999999999999999999999886543 33333333332211    122334467777777


Q ss_pred             eecCC
Q 028260          202 FSRGL  206 (211)
Q Consensus       202 ~~~~~  206 (211)
                      |..++
T Consensus       158 ~~EKp  162 (482)
T PRK14352        158 IVEQK  162 (482)
T ss_pred             EEECC
Confidence            77654

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=99.67  E-value=1.2e-15  Score=136.32  Aligned_cols=114  Identities=21%  Similarity=0.309  Sum_probs=87.1

Q ss_pred             CCcEEEEEecCCCCCCC-C-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc-CCeEeeCCcc-cCC
Q 028260           47 RSRVVGIIPARFASSRF-E-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSES-CRN  122 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRl-g-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~-~v~vi~~~~~-~~g  122 (211)
                      ++++.+||||||.|+|| + +|+|++++|+|||+|+++++..  .+++|+|+++.+. ..+...+ ++.++..... ..|
T Consensus         3 ~~~i~~VILAgG~s~Rmgg~~K~ll~i~Gkpll~~~i~~l~~--~~~~iivvv~~~~-~~~~~~~~~~~~i~d~~~g~~G   79 (366)
T PRK14489          3 ISQIAGVILAGGLSRRMNGRDKALILLGGKPLIERVVDRLRP--QFARIHLNINRDP-ARYQDLFPGLPVYPDILPGFQG   79 (366)
T ss_pred             CCCceEEEEcCCcccCCCCCCCceeEECCeeHHHHHHHHHHh--hCCEEEEEcCCCH-HHHHhhccCCcEEecCCCCCCC
Confidence            44688999999999999 4 6999999999999999999985  4889988664322 1121111 3344432222 246


Q ss_pred             ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028260          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (211)
Q Consensus       123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (211)
                      +..+++.|++++  +.+++++++||+||+++++++.+++.+.+
T Consensus        80 ~~~si~~gl~~~--~~~~vlv~~~D~P~i~~~~i~~L~~~~~~  120 (366)
T PRK14489         80 PLSGILAGLEHA--DSEYLFVVACDTPFLPENLVKRLSKALAI  120 (366)
T ss_pred             hHHHHHHHHHhc--CCCcEEEeeCCcCCCCHHHHHHHHHHhhc
Confidence            678999999987  46889999999999999999999998743

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.67  E-value=2.4e-15  Score=136.68  Aligned_cols=113  Identities=20%  Similarity=0.271  Sum_probs=92.1

Q ss_pred             EEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCCChH
Q 028260           51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTE  125 (211)
Q Consensus        51 ~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g~~~  125 (211)
                      .+||||||.|+||+   +|+|++++|+|||+|+++++.++ ++++++|+++  .+.+.+++.++++.++..+++ .|...
T Consensus         2 ~aiIlAaG~g~R~~~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iiiv~~~~~~~i~~~~~~~~i~~~~~~~~-~G~~~   79 (451)
T TIGR01173         2 SVVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVIDAARAL-GPQKIHVVYGHGAEQVRKALANRDVNWVLQAEQ-LGTGH   79 (451)
T ss_pred             eEEEEcCCCCcccCCCCchhhceeCCccHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhcCCCcEEEEcCCC-CchHH
Confidence            48999999999996   59999999999999999999987 5788877775  356666666666766554433 35567


Q ss_pred             HHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028260          126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (211)
Q Consensus       126 si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (211)
                      +++++++.+. +.+.++++.+|+||++++.++++++.+.+.
T Consensus        80 ai~~a~~~l~-~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~  119 (451)
T TIGR01173        80 AVLQALPFLP-DDGDVLVLYGDVPLISAETLERLLEAHRQN  119 (451)
T ss_pred             HHHHHHHhcC-CCCcEEEEECCcCCcCHHHHHHHHHHHhhC
Confidence            8899998884 246899999999999999999999988654

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=99.67  E-value=2.8e-15  Score=123.10  Aligned_cols=145  Identities=21%  Similarity=0.262  Sum_probs=104.2

Q ss_pred             EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH---cCCeE-eeCCcc
Q 028260           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ---FGADV-IMTSES  119 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~---~~v~v-i~~~~~  119 (211)
                      |||||||.|+||+      +|+|++++|+|||+|+++.+.++ ++++|+|+++  .+.+.+++..   +++.+ +..+..
T Consensus         1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   79 (223)
T cd06915           1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQ-GISRIVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEPE   79 (223)
T ss_pred             CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHC-CCCEEEEEcccCHHHHHHHHcCccccCceEEEEECCC
Confidence            6899999999995      59999999999999999999987 5999999997  4556666543   24444 333334


Q ss_pred             cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCcc
Q 028260          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY  198 (211)
Q Consensus       120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~  198 (211)
                      ..|...++..+++.+  ..+++++++||+|+ + ..+..+++.+.+ +.+.++.+.  +...    .....++..+++|+
T Consensus        80 ~~G~~~~l~~a~~~~--~~~~~lv~~~D~~~-~-~~~~~~l~~~~~~~~~~~~~~~--~~~~----~~~~~~v~~d~~~~  149 (223)
T cd06915          80 PLGTGGAIKNALPKL--PEDQFLVLNGDTYF-D-VDLLALLAALRASGADATMALR--RVPD----ASRYGNVTVDGDGR  149 (223)
T ss_pred             CCcchHHHHHHHhhc--CCCCEEEEECCccc-C-CCHHHHHHHHHhCCCcEEEEEE--ECCC----CCcceeEEECCCCe
Confidence            456667888999887  35789999999976 4 467888887754 344444443  3211    12234556788888


Q ss_pred             EEeeecCCC
Q 028260          199 AIYFSRGLI  207 (211)
Q Consensus       199 ~~~~~~~~~  207 (211)
                      +..|.+++.
T Consensus       150 v~~~~ek~~  158 (223)
T cd06915         150 VIAFVEKGP  158 (223)
T ss_pred             EEEEEeCCC
Confidence            989987643

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.67  E-value=3.5e-15  Score=136.62  Aligned_cols=152  Identities=19%  Similarity=0.227  Sum_probs=109.5

Q ss_pred             CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHc-CCeEeeCCccc
Q 028260           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF-GADVIMTSESC  120 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~-~v~vi~~~~~~  120 (211)
                      |.++.+||||||.|+||+   +|+|++++|+||++|+++++.++ +++++++++++  +++.+++.+. .+.++..+ ..
T Consensus         1 m~~~~avIlAaG~g~Rl~~~~pK~l~pi~g~pli~~~l~~l~~~-gi~~iiiv~~~~~~~i~~~~~~~~~i~~~~~~-~~   78 (459)
T PRK14355          1 MNNLAAIILAAGKGTRMKSDLVKVMHPLAGRPMVSWPVAAAREA-GAGRIVLVVGHQAEKVREHFAGDGDVSFALQE-EQ   78 (459)
T ss_pred             CCcceEEEEcCCCCcccCCCCCceeceeCCccHHHHHHHHHHhc-CCCeEEEEECCCHHHHHHHhccCCceEEEecC-CC
Confidence            346789999999999996   49999999999999999999988 58898888763  5566665432 33333332 33


Q ss_pred             CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEE
Q 028260          121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI  200 (211)
Q Consensus       121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~  200 (211)
                      .|...++..+++.+....+.++++++|+||++++.++++++.+... +..+++...+..+.    ...-.+..|+++++.
T Consensus        79 ~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~-~~~~~v~~~~~~~~----~~~g~v~~d~~g~v~  153 (459)
T PRK14355         79 LGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT-GAAVTVLTARLENP----FGYGRIVRDADGRVL  153 (459)
T ss_pred             CCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhc-CCcEEEEEEEcCCC----CcCCEEEEcCCCCEE
Confidence            4556788889888753357899999999999999999999988543 34444444442211    123345567777777


Q ss_pred             eeecC
Q 028260          201 YFSRG  205 (211)
Q Consensus       201 ~~~~~  205 (211)
                      .|.++
T Consensus       154 ~~~ek  158 (459)
T PRK14355        154 RIVEE  158 (459)
T ss_pred             EEEEc
Confidence            77754

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.66  E-value=5.1e-15  Score=134.76  Aligned_cols=150  Identities=15%  Similarity=0.219  Sum_probs=105.7

Q ss_pred             EEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHc-CCeEeeCCcccCCC
Q 028260           50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF-GADVIMTSESCRNG  123 (211)
Q Consensus        50 i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~-~v~vi~~~~~~~g~  123 (211)
                      +.+||||||.|+||+   +|+|++++|+|||+|+++++.++ ++++++|++..  +.+.+++.++ ++.++. +.+..|.
T Consensus         2 ~~~iIlAaG~gsR~~~~~pK~ll~v~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~~~i~~v~-~~~~~G~   79 (450)
T PRK14360          2 LAVAILAAGKGTRMKSSLPKVLHPLGGKSLVERVLDSCEEL-KPDRRLVIVGHQAEEVEQSLAHLPGLEFVE-QQPQLGT   79 (450)
T ss_pred             ceEEEEeCCCCccCCCCCChhcCEECChhHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhcccCCeEEEE-eCCcCCc
Confidence            568999999999996   69999999999999999999987 57777777653  4566655443 355554 2334566


Q ss_pred             hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEeee
Q 028260          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFS  203 (211)
Q Consensus       124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~  203 (211)
                      ..++..+++.+....++++++++|+||++++.++++++.+.+.. ..+++......+..    ..-.+..+++|++..|.
T Consensus        80 ~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~-~~~~~~~~~~~~~~----~~g~~~~d~~g~v~~~~  154 (450)
T PRK14360         80 GHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSN-ADVTLLTARLPNPK----GYGRVFCDGNNLVEQIV  154 (450)
T ss_pred             HHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcC-CcEEEEEEecCCCC----CccEEEECCCCCEEEEE
Confidence            67888888887532467899999999999999999999886542 22333322222111    12234457777877776


Q ss_pred             cCC
Q 028260          204 RGL  206 (211)
Q Consensus       204 ~~~  206 (211)
                      +++
T Consensus       155 ek~  157 (450)
T PRK14360        155 EDR  157 (450)
T ss_pred             ECC
Confidence            654

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.64  E-value=9.8e-15  Score=133.19  Aligned_cols=115  Identities=23%  Similarity=0.308  Sum_probs=90.4

Q ss_pred             CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCC
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRN  122 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g  122 (211)
                      |++.+||||||.|+||+   +|+|++++|+|||+|+++++.++ ++++++|+++  .+++.+++.. +..++.. ....|
T Consensus         1 m~~~avIlAaG~g~Rl~~~~pK~ll~i~Gkpli~~~l~~l~~~-gi~~iivvv~~~~~~i~~~~~~-~~~~~~~-~~~~g   77 (458)
T PRK14354          1 MNRYAIILAAGKGTRMKSKLPKVLHKVCGKPMVEHVVDSVKKA-GIDKIVTVVGHGAEEVKEVLGD-RSEFALQ-EEQLG   77 (458)
T ss_pred             CCceEEEEeCCCCcccCCCCChhhCEeCCccHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhcC-CcEEEEc-CCCCC
Confidence            67889999999999996   59999999999999999999987 5888887765  3455544322 2344433 23345


Q ss_pred             ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028260          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (211)
Q Consensus       123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (211)
                      ...+++.+++.+....|.++++++|+||++++.++++++.+.+
T Consensus        78 ~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~  120 (458)
T PRK14354         78 TGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEE  120 (458)
T ss_pred             HHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHh
Confidence            5678888988874224789999999999999999999998854

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.63  E-value=3.3e-15  Score=124.40  Aligned_cols=151  Identities=20%  Similarity=0.278  Sum_probs=117.8

Q ss_pred             CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC---cHHHHHHHHHcC--CeEeeCCc
Q 028260           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQFG--ADVIMTSE  118 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~---~e~i~~~~~~~~--v~vi~~~~  118 (211)
                      |+...|||||||.|+||+   ||+|.+++|+++|.|++++|.+. +++++|||++   .+.++++..+++  ..++.++.
T Consensus         1 ~~~~kavILAAG~GsRlg~~~PK~Lvev~gr~ii~~~i~~L~~~-gi~e~vvV~~g~~~~lve~~l~~~~~~~~iv~N~~   79 (239)
T COG1213           1 MHPMKAVILAAGFGSRLGPDIPKALVEVGGREIIYRTIENLAKA-GITEFVVVTNGYRADLVEEFLKKYPFNAKIVINSD   79 (239)
T ss_pred             CCceeEEEEecccccccCCCCCchhhhcCCeEeHHHHHHHHHHc-CCceEEEEeccchHHHHHHHHhcCCcceEEEeCCC
Confidence            345679999999999997   59999999999999999999997 6999999983   466777777766  45677776


Q ss_pred             ccCCC-hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCc
Q 028260          119 SCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHG  197 (211)
Q Consensus       119 ~~~g~-~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~  197 (211)
                      ...+. .-|++.|.+.+.   ..++++++|+ +..+..++.++++-   ...++......     ..+-++.+.+.+.+|
T Consensus        80 y~ktN~~~Sl~~akd~~~---~~fii~~sD~-vye~~~~e~l~~a~---~~~li~d~~~~-----~~~~~ea~kv~~e~G  147 (239)
T COG1213          80 YEKTNTGYSLLLAKDYMD---GRFILVMSDH-VYEPSILERLLEAP---GEGLIVDRRPR-----YVGVEEATKVKDEGG  147 (239)
T ss_pred             cccCCceeEEeeehhhhc---CcEEEEeCCE-eecHHHHHHHHhCc---CCcEEEecccc-----ccccCceeEEEecCC
Confidence            65555 568888999884   3599999999 88999999998764   22233322111     334467889999999


Q ss_pred             cEEeeecCCCCCC
Q 028260          198 YAIYFSRGLIPYN  210 (211)
Q Consensus       198 ~~~~~~~~~~~~~  210 (211)
                      ++...++++.+|+
T Consensus       148 ~i~~igK~l~e~~  160 (239)
T COG1213         148 RIVEIGKDLTEYD  160 (239)
T ss_pred             EEehhcCCccccc
Confidence            9999999987765

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=99.60  E-value=4.3e-14  Score=116.95  Aligned_cols=146  Identities=19%  Similarity=0.218  Sum_probs=102.7

Q ss_pred             EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH--cCCeEeeCCc--c
Q 028260           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ--FGADVIMTSE--S  119 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~--~~v~vi~~~~--~  119 (211)
                      |||+|||.|+||.      +|++++++|+|||+|+++.+.++ ++++|+|+++.  +.+.+++..  +++.+.+..+  .
T Consensus         2 aiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~i~~~~~~~~   80 (221)
T cd06422           2 AMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAA-GIRRIVVNTHHLADQIEAHLGDSRFGLRITISDEPDE   80 (221)
T ss_pred             EEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHC-CCCEEEEEccCCHHHHHHHHhcccCCceEEEecCCCc
Confidence            7999999999995      59999999999999999999998 69999999863  556665543  5665544332  2


Q ss_pred             cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCcc
Q 028260          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY  198 (211)
Q Consensus       120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~  198 (211)
                      ..|...++..+++.+.  .+.+++++||+++ +. .+..+++.+.+ ..+..+++..++...    ......+..+.+|.
T Consensus        81 ~~g~~~~l~~~~~~~~--~~~~lv~~~D~i~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~v~~d~~~~  152 (221)
T cd06422          81 LLETGGGIKKALPLLG--DEPFLVVNGDILW-DG-DLAPLLLLHAWRMDALLLLLPLVRNPG----HNGVGDFSLDADGR  152 (221)
T ss_pred             ccccHHHHHHHHHhcC--CCCEEEEeCCeee-CC-CHHHHHHHHHhccCCCceEEEEEEcCC----CCCcceEEECCCCc
Confidence            3456678889999884  4789999999965 33 57777777642 334444444433211    11223456777788


Q ss_pred             EEeeecCC
Q 028260          199 AIYFSRGL  206 (211)
Q Consensus       199 ~~~~~~~~  206 (211)
                      +..|.+++
T Consensus       153 v~~~~~~~  160 (221)
T cd06422         153 LRRGGGGA  160 (221)
T ss_pred             EeecccCC
Confidence            77777654

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.59  E-value=3.5e-14  Score=128.49  Aligned_cols=116  Identities=24%  Similarity=0.300  Sum_probs=83.7

Q ss_pred             CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHc--CCeEeeCCcc-
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF--GADVIMTSES-  119 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~--~v~vi~~~~~-  119 (211)
                      |++.+||||||.|+||+   +|+|++++|+|||+|+++.+.+.  +++++|+++  .+.+.+++.+.  +++++..+++ 
T Consensus         1 m~~~aiIlAaG~GtRl~~~~pK~Llpi~gkPli~~~i~~l~~~--~~~i~Ivv~~~~~~i~~~~~~~~~~v~~~~~~~~~   78 (430)
T PRK14359          1 MKLSIIILAAGKGTRMKSSLPKVLHTICGKPMLFYILKEAFAI--SDDVHVVLHHQKERIKEAVLEYFPGVIFHTQDLEN   78 (430)
T ss_pred             CCccEEEEcCCCCccCCCCCCceeCEECCccHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhcCCceEEEEecCcc
Confidence            56789999999999996   59999999999999999999975  577777664  46677766654  4555544322 


Q ss_pred             cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      ..|...++..    +....|.++++++|+||++++.++.+++   ..++.+++
T Consensus        79 ~~gt~~al~~----~~~~~d~vlv~~gD~p~~~~~~l~~l~~---~~~~~~v~  124 (430)
T PRK14359         79 YPGTGGALMG----IEPKHERVLILNGDMPLVEKDELEKLLE---NDADIVMS  124 (430)
T ss_pred             CCCcHHHHhh----cccCCCeEEEEECCccCCCHHHHHHHHh---CCCCEEEE
Confidence            2343444433    2223689999999999999999888764   23454444

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=99.57  E-value=1.6e-13  Score=119.52  Aligned_cols=114  Identities=15%  Similarity=0.162  Sum_probs=84.9

Q ss_pred             cEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH------------
Q 028260           49 RVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ------------  108 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~------------  108 (211)
                      ++.|||||||.|+||.      +|+|+|++|+|+|+|+++.+..+ ++++|+|+++  .+.+.+++..            
T Consensus         3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~-Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~   81 (297)
T TIGR01105         3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLLEQRV   81 (297)
T ss_pred             ceEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEecCChHHHHHHHhchHHHHHHHHHhc
Confidence            5679999999999994      59999999999999999999987 6999999986  3555555421            


Q ss_pred             -------------cCCeEee-CCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCH-------HHHHHHHHHHHhC
Q 028260          109 -------------FGADVIM-TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP-------EIIDGVVKALQAA  166 (211)
Q Consensus       109 -------------~~v~vi~-~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~-------~~i~~li~~~~~~  166 (211)
                                   +++++.+ ..+...|...++..|.+.+.  .+.++++.+|. +++.       -.+..+++.+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~--~~~flvv~gD~-l~~~~~~~~~~~~l~~li~~~~~~  157 (297)
T TIGR01105        82 KRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVG--DNPFVVVLPDI-IIDDATADPLRYNLAAMIARFNET  157 (297)
T ss_pred             chhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhC--CCCEEEEECCe-eccccccccchhHHHHHHHHHHHh
Confidence                         2434422 22233466678889999884  35678888997 5543       3788888887543

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=99.55  E-value=2.6e-13  Score=111.13  Aligned_cols=145  Identities=21%  Similarity=0.282  Sum_probs=101.2

Q ss_pred             EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH---cCCeEeeC-Ccc
Q 028260           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIMT-SES  119 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~---~~v~vi~~-~~~  119 (211)
                      |||||||.|+||+      +|++++++|+|||+|+++.+..+ ++++++|+++.  +.+.+.+..   ++..+... ...
T Consensus         1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~   79 (217)
T cd04181           1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARA-GIDEIILVVGYLGEQIEEYFGDGSKFGVNIEYVVQEE   79 (217)
T ss_pred             CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHcChhhcCceEEEEeCCC
Confidence            5899999999995      59999999999999999999997 49999999873  555555543   34444222 223


Q ss_pred             cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCcc
Q 028260          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY  198 (211)
Q Consensus       120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~  198 (211)
                      ..|...++..+++.+  ..+.++++.||+ +++. .+..+++.+.+ +.+.++.+.  +..    -..+.-.+..|++|.
T Consensus        80 ~~g~~~al~~~~~~~--~~~~~lv~~~D~-~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~v~~d~~~~  149 (217)
T cd04181          80 PLGTAGAVRNAEDFL--GDDDFLVVNGDV-LTDL-DLSELLRFHREKGADATIAVK--EVE----DPSRYGVVELDDDGR  149 (217)
T ss_pred             CCccHHHHHHhhhhc--CCCCEEEEECCe-ecCc-CHHHHHHHHHhcCCCEEEEEE--EcC----CCCcceEEEEcCCCc
Confidence            356678899999887  467899999999 4444 57777776643 344444433  321    112234456677788


Q ss_pred             EEeeecCCC
Q 028260          199 AIYFSRGLI  207 (211)
Q Consensus       199 ~~~~~~~~~  207 (211)
                      +..|.+++.
T Consensus       150 v~~~~ek~~  158 (217)
T cd04181         150 VTRFVEKPT  158 (217)
T ss_pred             EEEEEECCC
Confidence            888877653

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=99.54  E-value=3.2e-13  Score=113.29  Aligned_cols=146  Identities=16%  Similarity=0.147  Sum_probs=100.0

Q ss_pred             EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHHH---HcCCeEeeCCc
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMTSE  118 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~~---~~~v~vi~~~~  118 (211)
                      .+||||||.|+||.      +|+|+|++|+|||+|+++.+..+ ++++|+|+++.   +.+.+++.   .+++++.+..+
T Consensus         2 ~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~l~~~~~~~~~i~~~~~   80 (240)
T cd02538           2 KGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPEDLPLFKELLGDGSDLGIRITYAVQ   80 (240)
T ss_pred             eEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEeCcchHHHHHHHHhcccccCceEEEeeC
Confidence            48999999999994      69999999999999999999987 69999887753   34555543   24555533222


Q ss_pred             -ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeCCC
Q 028260          119 -SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNH  196 (211)
Q Consensus       119 -~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~  196 (211)
                       ...|...++..+.+.+.  .+.++++.+|+|+.+. .+.++++.+.+ ..+.++..  .++...    ...-.+..|.+
T Consensus        81 ~~~~G~~~al~~a~~~~~--~~~~lv~~gD~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~g~v~~d~~  151 (240)
T cd02538          81 PKPGGLAQAFIIGEEFIG--DDPVCLILGDNIFYGQ-GLSPILQRAAAQKEGATVFG--YEVNDP----ERYGVVEFDEN  151 (240)
T ss_pred             CCCCCHHHHHHHHHHhcC--CCCEEEEECCEEEccH-HHHHHHHHHHhcCCCcEEEE--EECCch----hcCceEEecCC
Confidence             23455567888888774  4678999999987654 67888887753 34444332  232111    11233556777


Q ss_pred             ccEEeeecCC
Q 028260          197 GYAIYFSRGL  206 (211)
Q Consensus       197 ~~~~~~~~~~  206 (211)
                      |++..|.+++
T Consensus       152 g~v~~~~ekp  161 (240)
T cd02538         152 GRVLSIEEKP  161 (240)
T ss_pred             CcEEEEEECC
Confidence            8888887654

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=1.8e-13  Score=122.05  Aligned_cols=146  Identities=21%  Similarity=0.275  Sum_probs=106.8

Q ss_pred             EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH---cCCeEeeC-Cc
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ---FGADVIMT-SE  118 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~---~~v~vi~~-~~  118 (211)
                      .|||||||.|+||.      ||+|+|++|||||+|+++.|.+. ++++++|++.  .+.+++++.+   ++.++.+. ..
T Consensus         3 kavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~-Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~   81 (358)
T COG1208           3 KAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAA-GVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEK   81 (358)
T ss_pred             eEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHC-CCcEEEEEeccchHHHHHHHhcccccCCceEEEecC
Confidence            49999999999993      69999999999999999999986 6999999986  4777887765   24555332 22


Q ss_pred             ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeC-CCc
Q 028260          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD-NHG  197 (211)
Q Consensus       119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~-~~~  197 (211)
                      ...|...++.++.+.+.  .+.|+++.+|. +.+.+ ++.+++.++++ ++..++..+.+...    .+.-.+..+ .++
T Consensus        82 ~~lGTag~l~~a~~~l~--~~~f~v~~GDv-~~~~d-l~~l~~~~~~~-~~~~~~~~~~~~~~----~~~Gvv~~~~~~~  152 (358)
T COG1208          82 EPLGTAGALKNALDLLG--GDDFLVLNGDV-LTDLD-LSELLEFHKKK-GALATIALTRVLDP----SEFGVVETDDGDG  152 (358)
T ss_pred             CcCccHHHHHHHHHhcC--CCcEEEEECCe-eeccC-HHHHHHHHHhc-cCccEEEEEecCCC----CcCceEEecCCCc
Confidence            33455678899999884  37899999999 56665 99999998766 55555554443221    122233334 335


Q ss_pred             cEEeeecCC
Q 028260          198 YAIYFSRGL  206 (211)
Q Consensus       198 ~~~~~~~~~  206 (211)
                      .+..|..++
T Consensus       153 ~v~~f~ekp  161 (358)
T COG1208         153 RVVEFREKP  161 (358)
T ss_pred             eEEEEEecC
Confidence            788888887

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=99.54  E-value=4.9e-13  Score=115.09  Aligned_cols=152  Identities=18%  Similarity=0.183  Sum_probs=102.0

Q ss_pred             EEEEecCCCCCCCC-------CccccccCC-eehHHHHHHHHHcCCCCCeEEEEcCcH---HHHHHHHH--cCCeEeeCC
Q 028260           51 VGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQ--FGADVIMTS  117 (211)
Q Consensus        51 ~aIIlA~G~ssRlg-------~K~ll~l~G-kpLl~~~i~~l~~~~~id~IVVvt~~e---~i~~~~~~--~~v~vi~~~  117 (211)
                      .+||||||.|+||.       +|+|+++.| +|||+|+++++...+.+++|+|+++.+   .+.+++.+  .+..++..+
T Consensus         2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~~~~~~ii~ep   81 (274)
T cd02509           2 YPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEGLPEENIILEP   81 (274)
T ss_pred             EEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhcCCCceEEECC
Confidence            48999999999992       599999998 999999999999875689999999853   34444443  234555543


Q ss_pred             cccCCChHHHHHHHHhhcc--CCCEEEEEcCCCcCCCHHHHHHHHHHHHh--CCCeEEEEeeeeCCCCCCCCCCCeEEEe
Q 028260          118 ESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKCVV  193 (211)
Q Consensus       118 ~~~~g~~~si~~al~~l~~--~~d~vlv~~~D~Pli~~~~i~~li~~~~~--~~d~vv~v~~~~~~~~~~~d~~~~~~v~  193 (211)
                       ...|+..++..++..+..  ..+.++++++|+++.+...+.++++++.+  ..+.++++..++..+++    ..-++..
T Consensus        82 -~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t----~yGyI~~  156 (274)
T cd02509          82 -EGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPET----GYGYIEA  156 (274)
T ss_pred             -CCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCC----CeEEEEe
Confidence             345666777777776642  35789999999998877777777654421  13445555444422211    2233444


Q ss_pred             CCCc-----cEEeeecCCC
Q 028260          194 DNHG-----YAIYFSRGLI  207 (211)
Q Consensus       194 ~~~~-----~~~~~~~~~~  207 (211)
                      +.++     .+..|.+++-
T Consensus       157 ~~~~~~~~~~V~~f~EKP~  175 (274)
T cd02509         157 GEKLGGGVYRVKRFVEKPD  175 (274)
T ss_pred             CCcCCCCceEEeEEEECcC
Confidence            4442     5777777653

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.54  E-value=3.8e-13  Score=111.50  Aligned_cols=153  Identities=16%  Similarity=0.196  Sum_probs=99.4

Q ss_pred             EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHc---C-----CeEe
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF---G-----ADVI  114 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~---~-----v~vi  114 (211)
                      .|||+|||.|+||.      +|+|+|++|+|||+|+++.+.++ ++++|+|+++  .+.+.+++.+.   +     ..+.
T Consensus         2 ~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~-Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~   80 (217)
T cd04197           2 QAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALN-GVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVI   80 (217)
T ss_pred             eEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHC-CCCeEEEEeCCCHHHHHHHHhhccccccccCcceEE
Confidence            48999999999995      59999999999999999999997 6999999886  46677766542   1     2222


Q ss_pred             -eCCcccCCChHHHHHH--HHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC----CCeEEEEeeeeCCCCC--CCC
Q 028260          115 -MTSESCRNGTERCNEA--LQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA----PDAVFSTAVTSLKPED--AFD  185 (211)
Q Consensus       115 -~~~~~~~g~~~si~~a--l~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~----~d~vv~v~~~~~~~~~--~~d  185 (211)
                       ...+...+...++...  ...+   .+.++++.+|.  +....+..+++.+++.    .++.+++..++..+..  ...
T Consensus        81 ~~~~~~~~~~~~al~~~~~~~~~---~~~flv~~gD~--i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~  155 (217)
T cd04197          81 IIMSEDCRSLGDALRDLDAKGLI---RGDFILVSGDV--VSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRT  155 (217)
T ss_pred             EEeCCCcCccchHHHHHhhcccc---CCCEEEEeCCe--eeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccC
Confidence             2222222222333221  1112   35689999997  4456788999988652    3555555555543221  111


Q ss_pred             CCCeEEEeCCC-ccEEeeecCCCCC
Q 028260          186 PNRVKCVVDNH-GYAIYFSRGLIPY  209 (211)
Q Consensus       186 ~~~~~~v~~~~-~~~~~~~~~~~~~  209 (211)
                      .+...++.|.+ +++++|.+++...
T Consensus       156 ~~~~vv~~d~~~~~v~~~~ekp~~~  180 (217)
T cd04197         156 GEEFVIAVDPKTSRLLHYEELPGSK  180 (217)
T ss_pred             CCceEEEEcCCCCcEEEEecccCCC
Confidence            12334555655 8999999986543

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.53  E-value=3.2e-13  Score=123.00  Aligned_cols=117  Identities=19%  Similarity=0.223  Sum_probs=89.4

Q ss_pred             EEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccCCChH
Q 028260           51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGTE  125 (211)
Q Consensus        51 ~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~g~~~  125 (211)
                      .|||||||.|+||+   +|+|++++|+|||+|+++.+.+.  +++++|+++.  +.+.++... ++.++..+ ...|...
T Consensus         2 ~avIlA~G~gtRl~~~~pK~l~~v~gkpli~~~l~~l~~~--~~~i~vv~~~~~~~i~~~~~~-~~~~~~~~-~~~g~~~   77 (448)
T PRK14357          2 RALVLAAGKGTRMKSKIPKVLHKISGKPMINWVIDTAKKV--AQKVGVVLGHEAELVKKLLPE-WVKIFLQE-EQLGTAH   77 (448)
T ss_pred             eEEEECCCCCccCCCCCCceeeEECCeeHHHHHHHHHHhc--CCcEEEEeCCCHHHHHHhccc-ccEEEecC-CCCChHH
Confidence            48999999999996   59999999999999999999975  4888888764  344443322 34554433 3346667


Q ss_pred             HHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEE
Q 028260          126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFS  172 (211)
Q Consensus       126 si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~  172 (211)
                      ++..+++.+. +.+.++++++|+|+++...++++++.+.+ ..+.++.
T Consensus        78 ai~~a~~~l~-~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~  124 (448)
T PRK14357         78 AVMCARDFIE-PGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTIL  124 (448)
T ss_pred             HHHHHHHhcC-cCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEE
Confidence            8888998874 35789999999999999999999998854 3444433

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=99.52  E-value=5e-13  Score=113.27  Aligned_cols=150  Identities=14%  Similarity=0.123  Sum_probs=99.2

Q ss_pred             EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH--------------
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ--------------  108 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~--------------  108 (211)
                      .+||||||.|+||.      +|+++|++|+|||+|+++.+.++ ++++++|+++.  +.+.++...              
T Consensus         2 ~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~   80 (260)
T TIGR01099         2 KAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEA-GIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKE   80 (260)
T ss_pred             eEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhC-CCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhH
Confidence            48999999999994      59999999999999999999987 69999999963  444444321              


Q ss_pred             --------c--CCeEee-CCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCH-HHHHHHHHHHHhCCCeEEEEeee
Q 028260          109 --------F--GADVIM-TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP-EIIDGVVKALQAAPDAVFSTAVT  176 (211)
Q Consensus       109 --------~--~v~vi~-~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~-~~i~~li~~~~~~~d~vv~v~~~  176 (211)
                              .  +..+.+ ..+...|...++..+++.+  ..+.++++.+|+++... ..++.+++.+.++...++.+.  
T Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~--~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~--  156 (260)
T TIGR01099        81 ELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFV--GDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVE--  156 (260)
T ss_pred             HHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhh--CCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEE--
Confidence                    0  122222 2223345567888888877  34679999999998766 489999998865433333332  


Q ss_pred             eCCCCCCCCCCCeEEEeC----CCccEEeeecCCC
Q 028260          177 SLKPEDAFDPNRVKCVVD----NHGYAIYFSRGLI  207 (211)
Q Consensus       177 ~~~~~~~~d~~~~~~v~~----~~~~~~~~~~~~~  207 (211)
                      .+..+...  ..-.+..|    .++.+..|.+++.
T Consensus       157 ~~~~~~~~--~~g~v~~d~~~~~~~~v~~~~Ekp~  189 (260)
T TIGR01099       157 EVPKEEVS--KYGVIDGEGVEEGLYEIKDMVEKPK  189 (260)
T ss_pred             ECChhhcc--cCceEEeccccCCceeEEEEEECCC
Confidence            22111111  11223333    2357778887653

Built to distinquish between the highly similar genes galU and galF

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=99.52  E-value=4.5e-13  Score=111.42  Aligned_cols=115  Identities=25%  Similarity=0.317  Sum_probs=86.7

Q ss_pred             EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-cCCeEeeCCcc-cC
Q 028260           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-FGADVIMTSES-CR  121 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~-~~v~vi~~~~~-~~  121 (211)
                      |||||||.|+||+      +|++++++|+|||+|+++.+.++ ++++|+|+++.  +.+.+++.. .++.++.++.. ..
T Consensus         1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (229)
T cd02523           1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEA-GIDDIVIVTGYKKEQIEELLKKYPNIKFVYNPDYAET   79 (229)
T ss_pred             CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHC-CCceEEEEeccCHHHHHHHHhccCCeEEEeCcchhhh
Confidence            5899999999995      59999999999999999999987 69999999873  555665544 35666665543 34


Q ss_pred             CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEe
Q 028260          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA  174 (211)
Q Consensus       122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~  174 (211)
                      |...++..+++.+   .+.++++.+|++ ++.+.++.+++   ...+.++.+.
T Consensus        80 g~~~s~~~~~~~~---~~~~lv~~~D~~-~~~~~~~~~~~---~~~~~~~~~~  125 (229)
T cd02523          80 NNIYSLYLARDFL---DEDFLLLEGDVV-FDPSILERLLS---SPADNAILVD  125 (229)
T ss_pred             CcHHHHHHHHHHc---CCCEEEEeCCEe-cCHHHHHHHHc---CCCCCeEEEc
Confidence            6678888898887   367999999996 46766665543   2345444443

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=99.52  E-value=3.7e-13  Score=111.99  Aligned_cols=143  Identities=21%  Similarity=0.213  Sum_probs=95.0

Q ss_pred             EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHH-----HHHHHH--cCCeEeeCCc
Q 028260           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI-----AECCQQ--FGADVIMTSE  118 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i-----~~~~~~--~~v~vi~~~~  118 (211)
                      +||||||.|+||.      +|+|++++|+|||+|+++.+.+++ +++++|+++.+..     ......  .++.++..+.
T Consensus         1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g-~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   79 (231)
T cd04183           1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIF-DSRFIFICRDEHNTKFHLDESLKLLAPNATVVELDG   79 (231)
T ss_pred             CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccC-CceEEEEEChHHhhhhhHHHHHHHhCCCCEEEEeCC
Confidence            4899999999994      599999999999999999999884 8999998864332     222221  2455555544


Q ss_pred             ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCc
Q 028260          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHG  197 (211)
Q Consensus       119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~  197 (211)
                      ...|+..++..|+..+. ..+.++++.||+ +++.+ +..++..+.+ ..+..+  .....     .+.+...+..|++|
T Consensus        80 ~~~g~~~~l~~a~~~l~-~~~~~lv~~~D~-i~~~~-~~~~~~~~~~~~~~~~i--~~~~~-----~~~~~~~v~~d~~~  149 (231)
T cd04183          80 ETLGAACTVLLAADLID-NDDPLLIFNCDQ-IVESD-LLAFLAAFRERDLDGGV--LTFFS-----SHPRWSYVKLDENG  149 (231)
T ss_pred             CCCcHHHHHHHHHhhcC-CCCCEEEEecce-eeccC-HHHHHHHhhccCCceEE--EEEeC-----CCCCeEEEEECCCC
Confidence            55566788888888873 246799999998 55554 5556655533 223222  11111     12233455667777


Q ss_pred             cEEeeecC
Q 028260          198 YAIYFSRG  205 (211)
Q Consensus       198 ~~~~~~~~  205 (211)
                      .+..|..+
T Consensus       150 ~v~~~~ek  157 (231)
T cd04183         150 RVIETAEK  157 (231)
T ss_pred             CEEEeEEc
Confidence            77777544

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=99.52  E-value=5.2e-13  Score=116.10  Aligned_cols=146  Identities=20%  Similarity=0.201  Sum_probs=99.3

Q ss_pred             cEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC---cHHHHHHHH---HcCCeE--e
Q 028260           49 RVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQ---QFGADV--I  114 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~---~e~i~~~~~---~~~v~v--i  114 (211)
                      ...+||||||.|+||.      +|+|+|++|||||+|.++.+..+ ++++|+|++.   .+.+.++..   .+++++  .
T Consensus         3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~a-Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~   81 (292)
T PRK15480          3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYK   81 (292)
T ss_pred             ceEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHC-CCCEEEEEecCCchHHHHHHHcCccccCceeEEE
Confidence            4679999999999994      59999999999999999999988 6999987653   245555543   345544  3


Q ss_pred             eCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCC-eEEE
Q 028260          115 MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNR-VKCV  192 (211)
Q Consensus       115 ~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~-~~~v  192 (211)
                      ..+ ...|...++..+.+.+.  .+.++++.+|..|.+ ..+..+++.+.+ ..+.++...  ++     -|+.+ -.+.
T Consensus        82 ~q~-~~~Gta~Al~~a~~~i~--~~~~~lv~gD~i~~~-~~l~~ll~~~~~~~~~~tv~~~--~v-----~~p~~yGvv~  150 (292)
T PRK15480         82 VQP-SPDGLAQAFIIGEEFIG--GDDCALVLGDNIFYG-HDLPKLMEAAVNKESGATVFAY--HV-----NDPERYGVVE  150 (292)
T ss_pred             ECC-CCCCHHHHHHHHHHHhC--CCCEEEEECCeeeec-cCHHHHHHHHHhCCCCeEEEEE--Ec-----CCcccCcEEE
Confidence            332 23355567788888774  344777889997754 468888887743 334443322  21     13332 2345


Q ss_pred             eCCCccEEeeecCC
Q 028260          193 VDNHGYAIYFSRGL  206 (211)
Q Consensus       193 ~~~~~~~~~~~~~~  206 (211)
                      .|++|.+..|.+++
T Consensus       151 ~d~~g~v~~i~EKP  164 (292)
T PRK15480        151 FDQNGTAISLEEKP  164 (292)
T ss_pred             ECCCCcEEEEEECC
Confidence            67778888887665

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=99.52  E-value=5.8e-13  Score=111.24  Aligned_cols=148  Identities=15%  Similarity=0.155  Sum_probs=100.8

Q ss_pred             EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH----cCCeEeeCC-
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ----FGADVIMTS-  117 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~----~~v~vi~~~-  117 (211)
                      .+||+|||.|+||+      +|+|++++|+|||+|+++.+.+. ++++++|++++  +.+.++..+    .++.+++.. 
T Consensus         2 ~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~-g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (233)
T cd06425           2 KALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKA-GVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIE   80 (233)
T ss_pred             cEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccC
Confidence            38999999999994      59999999999999999999987 68999998863  455555442    455654432 


Q ss_pred             cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeCC-
Q 028260          118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDN-  195 (211)
Q Consensus       118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~-  195 (211)
                      ....|...++..+.+.+....+.++++.||.. .+ ..+..+++.+++ ..+.++.+.  +..+.    ...-.+..++ 
T Consensus        81 ~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~-~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~g~v~~d~~  152 (233)
T cd06425          81 TEPLGTAGPLALARDLLGDDDEPFFVLNSDVI-CD-FPLAELLDFHKKHGAEGTILVT--KVEDP----SKYGVVVHDEN  152 (233)
T ss_pred             CCCCccHHHHHHHHHHhccCCCCEEEEeCCEe-eC-CCHHHHHHHHHHcCCCEEEEEE--EcCCc----cccCeEEEcCC
Confidence            23346667888898888532356899999984 33 346888887754 344444433  32211    1122334455 


Q ss_pred             CccEEeeecCCC
Q 028260          196 HGYAIYFSRGLI  207 (211)
Q Consensus       196 ~~~~~~~~~~~~  207 (211)
                      +|+++.|.+++.
T Consensus       153 ~~~v~~~~ekp~  164 (233)
T cd06425         153 TGRIERFVEKPK  164 (233)
T ss_pred             CCEEEEEEECCC
Confidence            678888877643

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.51  E-value=9.3e-13  Score=109.08  Aligned_cols=110  Identities=18%  Similarity=0.204  Sum_probs=84.4

Q ss_pred             EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHHHHc------CCeE-e
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQQF------GADV-I  114 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~~~~------~v~v-i  114 (211)
                      .|||+|||.|+||.      +|+|++++|+|||+|+++.+.+. ++++|+|++++   +.++++.+.+      ...+ +
T Consensus         2 ~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~   80 (214)
T cd04198           2 QAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKA-GFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT   80 (214)
T ss_pred             EEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHC-CCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence            58999999999994      59999999999999999999986 69999999974   3455655543      1223 2


Q ss_pred             eCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028260          115 MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (211)
Q Consensus       115 ~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (211)
                      ..+....|...++..+.+.+   .+.++++.||  ++....+..+++.+++.
T Consensus        81 ~~~~~~~gt~~al~~~~~~i---~~d~lv~~~D--~i~~~~l~~~l~~h~~~  127 (214)
T cd04198          81 IVLDEDMGTADSLRHIRKKI---KKDFLVLSCD--LITDLPLIELVDLHRSH  127 (214)
T ss_pred             ecCCCCcChHHHHHHHHhhc---CCCEEEEeCc--cccccCHHHHHHHHhcc
Confidence            33334445567888888876   3469999999  57777899999988654

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=99.51  E-value=4.3e-13  Score=116.28  Aligned_cols=144  Identities=20%  Similarity=0.216  Sum_probs=98.3

Q ss_pred             EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHHH---HcCCeEeeCCc-
Q 028260           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMTSE-  118 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~~---~~~v~vi~~~~-  118 (211)
                      +||||||.|+||.      +|+|+|++|||||+|+++.+..+ ++++|+|++.+   +.+.++..   .+++++.+..+ 
T Consensus         2 aIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~a-Gi~~I~iv~~~~~~~~~~~~lg~g~~~g~~i~~~~q~   80 (286)
T TIGR01207         2 GIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQP   80 (286)
T ss_pred             EEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEecCCcHHHHHHHhccccccCceEEEEEcc
Confidence            7999999999994      59999999999999999999987 69999877642   44555443   24555533222 


Q ss_pred             ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCC-CeEEEeCCC
Q 028260          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPN-RVKCVVDNH  196 (211)
Q Consensus       119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~-~~~~v~~~~  196 (211)
                      ...|...++..+.+.+.  .+.++++.+|++|.+ ..+..+++.+.+ ..+.++..  .++.     |+. .-.+..|.+
T Consensus        81 ~~~Gta~al~~a~~~l~--~~~~~li~gD~i~~~-~~l~~ll~~~~~~~~~~ti~~--~~v~-----~p~~yGvv~~d~~  150 (286)
T TIGR01207        81 SPDGLAQAFIIGEDFIG--GDPSALVLGDNIFYG-HDLSDLLKRAAARESGATVFA--YQVS-----DPERYGVVEFDSN  150 (286)
T ss_pred             CCCCHHHHHHHHHHHhC--CCCEEEEECCEeccc-cCHHHHHHHHHhcCCCcEEEE--EEcc-----CHHHCceEEECCC
Confidence            23455678888988884  356777789998755 578888887643 33443322  2211     232 234456677


Q ss_pred             ccEEeeecCC
Q 028260          197 GYAIYFSRGL  206 (211)
Q Consensus       197 ~~~~~~~~~~  206 (211)
                      |.+..|..++
T Consensus       151 g~V~~i~EKp  160 (286)
T TIGR01207       151 GRAISIEEKP  160 (286)
T ss_pred             CeEEEEEECC
Confidence            7887777664

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=99.51  E-value=2.1e-13  Score=114.17  Aligned_cols=150  Identities=22%  Similarity=0.282  Sum_probs=103.2

Q ss_pred             EEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeE-EEEcC--cHHHHHHHHH---cCCeE--ee
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHL-VVATD--DEKIAECCQQ---FGADV--IM  115 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~I-VVvt~--~e~i~~~~~~---~~v~v--i~  115 (211)
                      .+||||||.|+||.      +|+|+++.|+ |||+|+++.+.++ +++++ +|++.  .+.+.++...   +++++  +.
T Consensus         1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~-g~~~ii~V~~~~~~~~i~~~~~~~~~~~~~i~~i~   79 (248)
T PF00483_consen    1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANA-GIKEIIVVVNGYKEEQIEEHLGSGYKFGVKIEYIV   79 (248)
T ss_dssp             EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHT-TCSEEEEEEETTTHHHHHHHHTTSGGGTEEEEEEE
T ss_pred             CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhccc-CCceEEEEEeecccccccccccccccccccceeee
Confidence            38999999999994      5999999999 9999999999997 69994 55553  3556666643   34333  34


Q ss_pred             CCcccCCChHHHHHHHHhhccC--CCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEE
Q 028260          116 TSESCRNGTERCNEALQKLEKK--YDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCV  192 (211)
Q Consensus       116 ~~~~~~g~~~si~~al~~l~~~--~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v  192 (211)
                      .+. ..|...++..+...+..+  .+.++++++|. +.+. .+..+++.+.+ +.+..+.+...+..+    ....-.+.
T Consensus        80 ~~~-~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~-i~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~g~v~  152 (248)
T PF00483_consen   80 QPE-PLGTAGALLQALDFIEEEDDDEDFLVLNGDI-IFDD-DLQDMLEFHRESNADGTVTLLVVPVED----PSRYGVVE  152 (248)
T ss_dssp             ESS-SSCHHHHHHHTHHHHTTSEE-SEEEEETTEE-EEST-THHHHHHHHHHHSSCESEEEEEEESSG----GGGSEEEE
T ss_pred             ccc-ccchhHHHHHHHHHhhhccccceEEEEeccc-cccc-hhhhHHHhhhccccccccccccccccc----cccceeee
Confidence            332 235567888888887522  23599999999 4444 88999988854 343334444333211    22345677


Q ss_pred             eCCCccEEeeecCCCC
Q 028260          193 VDNHGYAIYFSRGLIP  208 (211)
Q Consensus       193 ~~~~~~~~~~~~~~~~  208 (211)
                      .|.+|.+..|.+++..
T Consensus       153 ~d~~~~V~~~~EKP~~  168 (248)
T PF00483_consen  153 VDEDGRVIRIVEKPDN  168 (248)
T ss_dssp             EETTSEEEEEEESCSS
T ss_pred             eccceeEEEEeccCcc
Confidence            7788899999887654

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=99.49  E-value=1.6e-12  Score=108.30  Aligned_cols=118  Identities=24%  Similarity=0.274  Sum_probs=85.7

Q ss_pred             EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH---cCCeEee-CCc
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIM-TSE  118 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~---~~v~vi~-~~~  118 (211)
                      .+||||||.|+||+      +|+|++++|+|||+|+++.+.++ ++++++|+++.  +.+.+++..   ++.++.. ...
T Consensus         2 ~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~i~~~~~~   80 (236)
T cd04189           2 KGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREA-GIEDIGIVVGPTGEEIKEALGDGSRFGVRITYILQE   80 (236)
T ss_pred             eEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHhcchhhcCCeEEEEECC
Confidence            48999999999994      69999999999999999999987 59999998864  556665543   3444422 222


Q ss_pred             ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEE
Q 028260          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFST  173 (211)
Q Consensus       119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v  173 (211)
                      ...|...++..|+..+.  .+.++++.+|+.+ +. .+..+++.+.+ ..+.++.+
T Consensus        81 ~~~g~~~sl~~a~~~i~--~~~~li~~~D~~~-~~-~~~~~~~~~~~~~~~~~~~~  132 (236)
T cd04189          81 EPLGLAHAVLAARDFLG--DEPFVVYLGDNLI-QE-GISPLVRDFLEEDADASILL  132 (236)
T ss_pred             CCCChHHHHHHHHHhcC--CCCEEEEECCeec-Cc-CHHHHHHHHHhcCCceEEEE
Confidence            33466678888888874  4568889999964 44 56777777643 34544443

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=99.49  E-value=9.5e-13  Score=112.07  Aligned_cols=119  Identities=18%  Similarity=0.236  Sum_probs=87.5

Q ss_pred             EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH----------c---
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ----------F---  109 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~----------~---  109 (211)
                      .+||||||.|+||.      +|+++|++|+|||+|+++.+.++ ++++|+|+++.  +.+.+++..          .   
T Consensus         2 kaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~   80 (267)
T cd02541           2 KAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAA-GIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKT   80 (267)
T ss_pred             eEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccH
Confidence            48999999999995      59999999999999999999987 69999999974  334433311          0   


Q ss_pred             -----------CCeE-eeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHH-HHHHHHHHHHhCCCeEEE
Q 028260          110 -----------GADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPE-IIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       110 -----------~v~v-i~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~-~i~~li~~~~~~~d~vv~  172 (211)
                                 +.++ +...+...|...++..+++.+.  .+.++++.+|+++...+ .++++++.+.+....++.
T Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~  154 (267)
T cd02541          81 DLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIG--DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIA  154 (267)
T ss_pred             HHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhC--CCceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEE
Confidence                       2333 2222233566678888998884  36799999999887664 799999988643333333

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.48  E-value=9.9e-13  Score=111.71  Aligned_cols=143  Identities=21%  Similarity=0.254  Sum_probs=101.7

Q ss_pred             EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHH---HHcCCeEeeCCcc
Q 028260           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECC---QQFGADVIMTSES  119 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~---~~~~v~vi~~~~~  119 (211)
                      +||||||.|||+-      +|+|+|+.+||||.|.++++..+ ++++|.|++..   +.++++.   .++++++.+.-++
T Consensus         3 giILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~a-GI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~   81 (286)
T COG1209           3 GVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLA-GIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQP   81 (286)
T ss_pred             cEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHc-CCceEEEEecCCchhhhhhhhcCccccCcceEEEecC
Confidence            8999999999993      59999999999999999999998 69999888864   4455554   2467666443233


Q ss_pred             cCCCh-HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeE-EEeCCC
Q 028260          120 CRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVK-CVVDNH  196 (211)
Q Consensus       120 ~~g~~-~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~-~v~~~~  196 (211)
                      .+.+. .++..|-+.+  .++.|+++.+|.-|..  .+.++++.+.+ ..++.+-..  +     +-||+++- +..|.+
T Consensus        82 ~p~GlA~Av~~a~~fv--~~~~f~l~LGDNi~~~--~l~~~~~~~~~~~~ga~i~~~--~-----V~dP~rfGV~e~d~~  150 (286)
T COG1209          82 EPDGLAHAVLIAEDFV--GDDDFVLYLGDNIFQD--GLSELLEHFAEEGSGATILLY--E-----VDDPSRYGVVEFDED  150 (286)
T ss_pred             CCCcHHHHHHHHHhhc--CCCceEEEecCceecc--ChHHHHHHHhccCCCcEEEEE--E-----cCCcccceEEEEcCC
Confidence            33454 5666777777  4688999999996655  78888887753 344443322  2     22565444 556667


Q ss_pred             ccEEeeecCC
Q 028260          197 GYAIYFSRGL  206 (211)
Q Consensus       197 ~~~~~~~~~~  206 (211)
                      |+++..-++|
T Consensus       151 ~~v~~l~EKP  160 (286)
T COG1209         151 GKVIGLEEKP  160 (286)
T ss_pred             CcEEEeEECC
Confidence            7777777664

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.48  E-value=1.5e-12  Score=117.71  Aligned_cols=155  Identities=16%  Similarity=0.098  Sum_probs=104.7

Q ss_pred             CCCcEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH-cC-----
Q 028260           46 FRSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-FG-----  110 (211)
Q Consensus        46 ~~m~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~-~~-----  110 (211)
                      +|.++.|||||||.|+||.      +|+|+|++|+ |||+|+++.+.++ ++++|+|+++  .+.+.+++.. +.     
T Consensus         2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~   80 (407)
T PRK00844          2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNS-GYLRIYVLTQYKSHSLDRHISQTWRLSGLL   80 (407)
T ss_pred             CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHHhCcCccccC
Confidence            4567889999999999995      5999999998 9999999999997 6999999986  4566666542 21     


Q ss_pred             CeEee-CCc-------ccCCChHHHHHHHHhhccC-CCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCC
Q 028260          111 ADVIM-TSE-------SCRNGTERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKP  180 (211)
Q Consensus       111 v~vi~-~~~-------~~~g~~~si~~al~~l~~~-~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~  180 (211)
                      ..++. .+.       ...|...++..+++.+..+ .++++++.+|. + ....+.++++.+.++ .+.++.+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~-v-~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~  158 (407)
T PRK00844         81 GNYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADH-V-YRMDPRQMVDFHIESGAGVTVAAIRVPREE  158 (407)
T ss_pred             CCeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCE-E-EcCCHHHHHHHHHhcCCcEEEEEEecchHH
Confidence            11221 110       1245567788888887432 26799999998 3 445788888887543 44444433211111


Q ss_pred             CCCCCCCCeEEEeCCCccEEeeecCCC
Q 028260          181 EDAFDPNRVKCVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       181 ~~~~d~~~~~~v~~~~~~~~~~~~~~~  207 (211)
                        .  .+.-.+..|++|.+..|..++.
T Consensus       159 --~--~~~Gvv~~d~~g~v~~~~eKp~  181 (407)
T PRK00844        159 --A--SAFGVIEVDPDGRIRGFLEKPA  181 (407)
T ss_pred             --c--ccCCEEEECCCCCEEEEEECCC
Confidence              1  1233455677788888876653

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=99.47  E-value=1.5e-12  Score=107.29  Aligned_cols=143  Identities=14%  Similarity=0.169  Sum_probs=92.2

Q ss_pred             EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH---cCCeEee-CCcc
Q 028260           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIM-TSES  119 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~---~~v~vi~-~~~~  119 (211)
                      +||||||.|+||+      +|+|++++|+|||+|+++.+... ++++++|++++  +.+.++..+   ++.++.+ ....
T Consensus         1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~   79 (220)
T cd06426           1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQ-GFRNFYISVNYLAEMIEDYFGDGSKFGVNISYVREDK   79 (220)
T ss_pred             CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEECccCHHHHHHHHCCccccCccEEEEECCC
Confidence            5899999999994      59999999999999999999987 69999999874  445555432   3444432 2222


Q ss_pred             cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCCCCCCCCCCeEEEeCCCcc
Q 028260          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY  198 (211)
Q Consensus       120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~  198 (211)
                      ..|...++..+.+..   .+.+++++||.  +....++.+++.+.+. .+.++.+.  +..+.    ...-.+..| ++.
T Consensus        80 ~~g~~~~l~~~~~~~---~~~~lv~~~D~--i~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~----~~~g~~~~d-~~~  147 (220)
T cd06426          80 PLGTAGALSLLPEKP---TDPFLVMNGDI--LTNLNYEHLLDFHKENNADATVCVR--EYEVQ----VPYGVVETE-GGR  147 (220)
T ss_pred             CCcchHHHHHHHhhC---CCCEEEEcCCE--eeccCHHHHHHHHHhcCCCEEEEEE--EcCCC----CcceEEEEC-CCE
Confidence            334444554444332   57899999996  4456888999887643 34444332  21111    111122234 367


Q ss_pred             EEeeecCCC
Q 028260          199 AIYFSRGLI  207 (211)
Q Consensus       199 ~~~~~~~~~  207 (211)
                      +..|.+++.
T Consensus       148 v~~~~ek~~  156 (220)
T cd06426         148 ITSIEEKPT  156 (220)
T ss_pred             EEEEEECCC
Confidence            777776643

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>PRK10122 GalU regulator GalF; Provisional

Probab=99.47  E-value=3.5e-12  Score=111.08  Aligned_cols=114  Identities=15%  Similarity=0.182  Sum_probs=83.7

Q ss_pred             CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-----------
Q 028260           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-----------  108 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~-----------  108 (211)
                      .++.+||||||.|+||.      +|+|+|++|+|+|+|+++.+.++ ++++|+|+++.  +.+.+++..           
T Consensus         2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~   80 (297)
T PRK10122          2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLLEQR   80 (297)
T ss_pred             CceEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCChHHHHHHHhcchhHHHHHhhc
Confidence            35679999999999995      59999999999999999999997 69999999863  445544421           


Q ss_pred             --------------cCCeE--eeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHH-------HHHHHHHHHHh
Q 028260          109 --------------FGADV--IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPE-------IIDGVVKALQA  165 (211)
Q Consensus       109 --------------~~v~v--i~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~-------~i~~li~~~~~  165 (211)
                                    ++.++  +..+ ...|...++..+.+.+.  .+.++++.+|. +++.+       .+.++++.+.+
T Consensus        81 ~k~~~l~~~~~~~~~~~~i~~~~q~-~~lGtg~al~~a~~~l~--~~~fvvi~gD~-l~~~~~~~~~~~dl~~li~~h~~  156 (297)
T PRK10122         81 VKRQLLAEVQSICPPGVTIMNVRQG-QPLGLGHSILCARPAIG--DNPFVVVLPDV-VIDDASADPLRYNLAAMIARFNE  156 (297)
T ss_pred             chhhhHHhhhhccCCCceEEEeecC-CcCchHHHHHHHHHHcC--CCCEEEEECCe-eccCccccccchhHHHHHHHHHH
Confidence                          23333  2222 23455677888888873  34577777998 66532       68889988854


Q ss_pred             C
Q 028260          166 A  166 (211)
Q Consensus       166 ~  166 (211)
                      +
T Consensus       157 ~  157 (297)
T PRK10122        157 T  157 (297)
T ss_pred             h
Confidence            3

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.46  E-value=1.7e-12  Score=115.92  Aligned_cols=151  Identities=13%  Similarity=0.163  Sum_probs=101.5

Q ss_pred             CcEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH---cC-----
Q 028260           48 SRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FG-----  110 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~---~~-----  110 (211)
                      .++.|||||||.|+||.      +|+|+|++|+ |||+|+++.+.++ ++++|+|+++.  +.+.+++.+   ++     
T Consensus         2 ~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~   80 (380)
T PRK05293          2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANS-GIDTVGVLTQYQPLELNNHIGIGSPWDLDRIN   80 (380)
T ss_pred             CcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhC-CCCEEEEEecCCHHHHHHHHhCCCcccccCCC
Confidence            45789999999999994      5999999999 8999999999987 69999999974  556666532   22     


Q ss_pred             --CeEe--eCCc----ccCCChHHHHHHHHhhccC-CCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCC
Q 028260          111 --ADVI--MTSE----SCRNGTERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKP  180 (211)
Q Consensus       111 --v~vi--~~~~----~~~g~~~si~~al~~l~~~-~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~  180 (211)
                        +.+.  +..+    ...|...++..+++.+... .+.++++.+|. +. ...+.++++.+.+ ..+.++.+...+.. 
T Consensus        81 ~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~-l~-~~d~~~ll~~h~~~~~~~tl~~~~~~~~-  157 (380)
T PRK05293         81 GGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDH-IY-KMDYDKMLDYHKEKEADVTIAVIEVPWE-  157 (380)
T ss_pred             CCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCE-EE-cCCHHHHHHHHHhcCCCEEEEEEEcchh-
Confidence              1221  1111    1245567888888887422 36899999998 43 4578888887754 34443332211111 


Q ss_pred             CCCCCCC-CeEEEeCCCccEEeeecCC
Q 028260          181 EDAFDPN-RVKCVVDNHGYAIYFSRGL  206 (211)
Q Consensus       181 ~~~~d~~-~~~~v~~~~~~~~~~~~~~  206 (211)
                          ++. .-.+..|.+|.+..|.+++
T Consensus       158 ----~~~~yG~v~~d~~g~V~~~~eKp  180 (380)
T PRK05293        158 ----EASRFGIMNTDENMRIVEFEEKP  180 (380)
T ss_pred             ----hccccCEEEECCCCcEEEEEeCC
Confidence                111 2234467778888888775

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=99.46  E-value=7.8e-13  Score=108.21  Aligned_cols=112  Identities=16%  Similarity=0.179  Sum_probs=84.6

Q ss_pred             EEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH---cC-------Ce
Q 028260           52 GIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FG-------AD  112 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~---~~-------v~  112 (211)
                      +||||||.|+||.      +|+|+|++|+ |||+|+++.+.++ ++++++|+++.  +++.+++.+   ++       +.
T Consensus         1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~~~~~~~~~~~~~~   79 (200)
T cd02508           1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNS-GIRNVGVLTQYKSRSLNDHLGSGKEWDLDRKNGGLF   79 (200)
T ss_pred             CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHC-CCCEEEEEeCCChHHHHHHHhCCCcccCCCCCCCEE
Confidence            5899999999993      5999999998 9999999999987 69999999974  556665542   12       22


Q ss_pred             Eee-----CCcccCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028260          113 VIM-----TSESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (211)
Q Consensus       113 vi~-----~~~~~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (211)
                      ++.     +++...|...++..|.+.+.. +.+.++++.+|+  +....+.++++.+.++
T Consensus        80 ~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~--v~~~~~~~~l~~~~~~  137 (200)
T cd02508          80 ILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDH--IYNMDYREMLDFHIES  137 (200)
T ss_pred             EeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCE--EEecCHHHHHHHHHHc
Confidence            332     122335667788888888742 257899999999  4556899999887543

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.45  E-value=3.1e-12  Score=116.42  Aligned_cols=154  Identities=16%  Similarity=0.173  Sum_probs=105.1

Q ss_pred             CCCcEEEEEecCCCCCCCC------CccccccCCee-hHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH-cC-----
Q 028260           46 FRSRVVGIIPARFASSRFE------GKPLVNILGKP-MIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-FG-----  110 (211)
Q Consensus        46 ~~m~i~aIIlA~G~ssRlg------~K~ll~l~Gkp-Ll~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~-~~-----  110 (211)
                      .+++..|||||||.|+||.      +|+|+|++|+| ||+|+++.+.++ ++++|+|+++  .+.+.+++.+ ++     
T Consensus        12 ~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~-Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~   90 (425)
T PRK00725         12 LTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINS-GIRRIGVLTQYKAHSLIRHIQRGWSFFREE   90 (425)
T ss_pred             hhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHC-CCCeEEEEecCCHHHHHHHHHhhhcccccC
Confidence            4467889999999999994      59999999997 999999999997 6999999996  3556665543 21     


Q ss_pred             -Ce-Ee-eC-------CcccCCChHHHHHHHHhhccC-CCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeC
Q 028260          111 -AD-VI-MT-------SESCRNGTERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSL  178 (211)
Q Consensus       111 -v~-vi-~~-------~~~~~g~~~si~~al~~l~~~-~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~  178 (211)
                       .. +. ..       .+...|...++..++..+... .+.++++.+|+ + ....+.++++.+.++ .+.++.+.  ++
T Consensus        91 ~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~-l-~~~dl~~ll~~h~~~~~~~tl~~~--~~  166 (425)
T PRK00725         91 LGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDH-I-YKMDYSRMLADHVESGADCTVACL--EV  166 (425)
T ss_pred             CCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCe-E-eccCHHHHHHHHHHcCCCEEEEEE--ec
Confidence             11 11 10       111245567788888887522 47899999998 3 455789999887543 44444433  22


Q ss_pred             CCCCCCCC-CCeEEEeCCCccEEeeecCCC
Q 028260          179 KPEDAFDP-NRVKCVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       179 ~~~~~~d~-~~~~~v~~~~~~~~~~~~~~~  207 (211)
                      ...   ++ ..-.+..|+++.+..|.+++.
T Consensus       167 ~~~---~~~~yG~v~~d~~~~V~~~~EKp~  193 (425)
T PRK00725        167 PRE---EASAFGVMAVDENDRITAFVEKPA  193 (425)
T ss_pred             chh---hcccceEEEECCCCCEEEEEECCC
Confidence            110   11 234455677788888887653

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.45  E-value=2.1e-12  Score=117.67  Aligned_cols=153  Identities=19%  Similarity=0.228  Sum_probs=104.5

Q ss_pred             CCcEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH-c-------
Q 028260           47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-F-------  109 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~-~-------  109 (211)
                      |.++.|||||||.|+||.      +|+|+|++|+ |||+|+++.+.++ ++++|+|+++  .+.+.+++.+ +       
T Consensus         1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~-Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~   79 (429)
T PRK02862          1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINS-GINKIYVLTQFNSASLNRHISQTYNFDGFSG   79 (429)
T ss_pred             CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHC-CCCEEEEEecCCHHHHHHHHhcCcCccccCC
Confidence            457889999999999994      5999999999 9999999999997 6999999997  4566666542 1       


Q ss_pred             C-CeEeeCCc------ccCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCC
Q 028260          110 G-ADVIMTSE------SCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKP  180 (211)
Q Consensus       110 ~-v~vi~~~~------~~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~  180 (211)
                      + +.+....+      ...|...++..+++.+.. ..+.++++.+|+ +++ ..+..+++.+.+. ++.++.+...+  .
T Consensus        80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~--~  155 (429)
T PRK02862         80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQ-LYR-MDYRLFVQHHRETGADITLAVLPVD--E  155 (429)
T ss_pred             CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCE-EEe-CCHHHHHHHHHHcCCCEEEEEEecC--h
Confidence            1 11111111      114666788888887742 246899999999 554 5788888877543 34433332221  1


Q ss_pred             CCCCCC-CCeEEEeCCCccEEeeecCCC
Q 028260          181 EDAFDP-NRVKCVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       181 ~~~~d~-~~~~~v~~~~~~~~~~~~~~~  207 (211)
                         -++ ..-.+..|++|.+..|.+++.
T Consensus       156 ---~~~~~yG~i~~d~~g~V~~~~Ekp~  180 (429)
T PRK02862        156 ---KDASGFGLMKTDDDGRITEFSEKPK  180 (429)
T ss_pred             ---hhcccceEEEECCCCcEEEEEECCC
Confidence               112 233455677888888887764

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.44  E-value=2.9e-12  Score=113.47  Aligned_cols=143  Identities=22%  Similarity=0.258  Sum_probs=98.5

Q ss_pred             EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHHHH---cCCeE-eeCCc
Q 028260           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQQ---FGADV-IMTSE  118 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~~~---~~v~v-i~~~~  118 (211)
                      +||||||.|+||.      +|+|++++|+|||+|+++.+.++ ++++++|+++.   +.+.+++..   ++.++ +..++
T Consensus         2 aiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   80 (353)
T TIGR01208         2 ALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEA-GITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQG   80 (353)
T ss_pred             EEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHC-CCCEEEEEeCCCCHHHHHHHHhcccccCceEEEEECC
Confidence            7999999999994      59999999999999999999998 69999988865   456665542   34444 22223


Q ss_pred             ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCC-eEEEeCCC
Q 028260          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNR-VKCVVDNH  196 (211)
Q Consensus       119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~-~~~v~~~~  196 (211)
                      ...|...++..+++.+.  .+.++++.+|+++ + ..+..+++.+.+ ..+.++.+  .++.     ++.. -.+..+.+
T Consensus        81 ~~~G~~~al~~a~~~l~--~~~~li~~gD~~~-~-~~l~~l~~~~~~~~~d~ti~~--~~~~-----~~~~~g~~~~~~~  149 (353)
T TIGR01208        81 EPLGLAHAVYTARDFLG--DDDFVVYLGDNLI-Q-DGISRFVKSFEEKDYDALILL--TKVR-----DPTAFGVAVLEDG  149 (353)
T ss_pred             CCCCHHHHHHHHHHhcC--CCCEEEEECCeec-C-ccHHHHHHHHHhcCCCcEEEE--EECC-----ChhhCeEEEEcCC
Confidence            34566678889998874  4568899999976 3 578888888753 34444333  3322     2211 12333555


Q ss_pred             ccEEeeecCC
Q 028260          197 GYAIYFSRGL  206 (211)
Q Consensus       197 ~~~~~~~~~~  206 (211)
                      +.+..|..++
T Consensus       150 ~~v~~~~ekp  159 (353)
T TIGR01208       150 KRILKLVEKP  159 (353)
T ss_pred             CcEEEEEECC
Confidence            6677776654

Alternate name: dTDP-D-glucose synthase

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=99.43  E-value=8.1e-12  Score=105.94  Aligned_cols=150  Identities=15%  Similarity=0.142  Sum_probs=99.1

Q ss_pred             EEEecCC--CCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH----cCCeEeeCC
Q 028260           52 GIIPARF--ASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ----FGADVIMTS  117 (211)
Q Consensus        52 aIIlA~G--~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~----~~v~vi~~~  117 (211)
                      +||||||  .|+||.      +|+|+|++|+|||+|+++.+....++++|+|+++  .+.+.+++..    .+..+.+..
T Consensus         1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~   80 (257)
T cd06428           1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ   80 (257)
T ss_pred             CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence            5899999  899994      6999999999999999999998336999999886  3455555432    344543322


Q ss_pred             -cccCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCCCCCCCCCCeEEEeC
Q 028260          118 -ESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVD  194 (211)
Q Consensus       118 -~~~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~~~~~d~~~~~~v~~  194 (211)
                       ....|...++..+.+.+.. ..+.++++.||.++ + ..++.+++.+.+. .+.++.+  +++..+..  ...-.+..|
T Consensus        81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~-~-~dl~~~~~~h~~~~~~~tl~~--~~~~~~~~--~~yg~v~~d  154 (257)
T cd06428          81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCC-D-FPLQELLEFHKKHGASGTILG--TEASREQA--SNYGCIVED  154 (257)
T ss_pred             CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeec-C-CCHHHHHHHHHHcCCCEEEEE--EEcccccc--ccccEEEEe
Confidence             2234556677777777642 24679999999963 3 3688999887543 3443332  23211111  112234456


Q ss_pred             -CCccEEeeecCCC
Q 028260          195 -NHGYAIYFSRGLI  207 (211)
Q Consensus       195 -~~~~~~~~~~~~~  207 (211)
                       .+|.+..|.+++.
T Consensus       155 ~~~g~v~~~~Ekp~  168 (257)
T cd06428         155 PSTGEVLHYVEKPE  168 (257)
T ss_pred             CCCCeEEEEEeCCC
Confidence             5778888887653

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=99.42  E-value=2.6e-12  Score=113.95  Aligned_cols=147  Identities=15%  Similarity=0.195  Sum_probs=98.4

Q ss_pred             EEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH-cC--------CeE
Q 028260           52 GIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-FG--------ADV  113 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~-~~--------v~v  113 (211)
                      |||||||.|+||.      +|+|+|++|+ |||+|+++.+.++ ++++|+|+++  .+++.+++.+ ++        +++
T Consensus         1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~   79 (361)
T TIGR02091         1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS-GIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTL   79 (361)
T ss_pred             CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhc-CCceEEEEeccChHHHHHHHHhccCccCccCCCEEE
Confidence            5999999999995      5999999999 8999999999998 6999999986  3556665542 11        122


Q ss_pred             ee------CCcccCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCCCCCCC
Q 028260          114 IM------TSESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFD  185 (211)
Q Consensus       114 i~------~~~~~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~~~~~d  185 (211)
                      +.      .++...|...++..++..+.. ..+.++++.+|+ +. ...+..+++.+.+. .+..+.+.  +...   -+
T Consensus        80 ~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~-l~-~~~l~~~l~~~~~~~~~~ti~~~--~~~~---~~  152 (361)
T TIGR02091        80 LPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDH-IY-KMDYEKMLDYHIESGADVTIACI--PVPR---KE  152 (361)
T ss_pred             eCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCE-EE-cCCHHHHHHHHHHcCCCEEEEEE--ecCh---Hh
Confidence            11      111124556788888887742 247899999998 44 44688888877543 34444332  2110   01


Q ss_pred             CC-CeEEEeCCCccEEeeecCC
Q 028260          186 PN-RVKCVVDNHGYAIYFSRGL  206 (211)
Q Consensus       186 ~~-~~~~v~~~~~~~~~~~~~~  206 (211)
                      .. .-.+..|.++++..|.+++
T Consensus       153 ~~~~g~v~~d~~~~v~~~~ekp  174 (361)
T TIGR02091       153 ASRFGVMQVDEDGRIVDFEEKP  174 (361)
T ss_pred             cccccEEEECCCCCEEEEEECC
Confidence            12 2245567777888887664

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=99.41  E-value=9.4e-12  Score=105.80  Aligned_cols=141  Identities=15%  Similarity=0.190  Sum_probs=94.4

Q ss_pred             EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHc-----CCeEeeC--
Q 028260           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-----GADVIMT--  116 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~-----~v~vi~~--  116 (211)
                      +||||||.|+||.      +|+|++++|+|||+|+++.+.++ ++++|+|+++  .+.+.+++.+.     +.++...  
T Consensus         2 avilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   80 (254)
T TIGR02623         2 AVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHH-GINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN   80 (254)
T ss_pred             EEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence            7999999999993      59999999999999999999987 6999999986  35555555432     2222110  


Q ss_pred             -----------------Cc-ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeee
Q 028260          117 -----------------SE-SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTS  177 (211)
Q Consensus       117 -----------------~~-~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~  177 (211)
                                       .+ ...|...++..+.+.+.  .+.++++.+|.  +....+.++++.+.+ +.+.++.  ...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~--~e~flv~~gD~--i~~~dl~~~~~~h~~~~~d~tl~--~~~  154 (254)
T TIGR02623        81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD--DEAFCFTYGDG--VADIDIKALIAFHRKHGKKATVT--AVQ  154 (254)
T ss_pred             ccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC--CCeEEEEeCCe--EecCCHHHHHHHHHHcCCCEEEE--Eec
Confidence                             01 11234457888888873  56899999998  345678888887754 3444332  111


Q ss_pred             CCCCCCCCCC-CeEEEeCCCccEEeeecCCC
Q 028260          178 LKPEDAFDPN-RVKCVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       178 ~~~~~~~d~~-~~~~v~~~~~~~~~~~~~~~  207 (211)
                             ++. .-.+..| ++.+..|.+++.
T Consensus       155 -------~~~~yG~v~~d-~~~V~~~~Ekp~  177 (254)
T TIGR02623       155 -------PPGRFGALDLE-GEQVTSFQEKPL  177 (254)
T ss_pred             -------CCCcccEEEEC-CCeEEEEEeCCC
Confidence                   111 2233445 357778887653

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=99.41  E-value=1.1e-11  Score=104.93  Aligned_cols=145  Identities=15%  Similarity=0.170  Sum_probs=97.6

Q ss_pred             EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHc---C--CeEe----
Q 028260           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF---G--ADVI----  114 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~---~--v~vi----  114 (211)
                      |||||||.|+||.      +|+|++++|+|||+|+++.+..+ ++++|+|+++  .+.+.++..+.   +  +++.    
T Consensus         1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   79 (253)
T cd02524           1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHY-GHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN   79 (253)
T ss_pred             CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhC-CCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence            5899999999994      59999999999999999999987 6999999986  46677766542   1  2221    


Q ss_pred             ----eCCcc------------cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeee
Q 028260          115 ----MTSES------------CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTS  177 (211)
Q Consensus       115 ----~~~~~------------~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~  177 (211)
                          .++..            ..+...++..+++.+.. .+.++++.+|. +.+. .+..+++.+.. +.+.++..  ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-~~~~lv~~gD~-i~~~-dl~~ll~~h~~~~~~~tl~~--~~  154 (253)
T cd02524          80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-DETFMLTYGDG-VSDV-NINALIEFHRSHGKLATVTA--VH  154 (253)
T ss_pred             ceeeecccccccceeecccCcccccHHHHHHHHHhcCC-CCeEEEEcCCE-EECC-CHHHHHHHHHHcCCCEEEEE--ec
Confidence                11100            12234567888888741 27899999998 4454 55888887654 33333322  11


Q ss_pred             CCCCCCCCCCCeEEEeCCCccEEeeecCCCC
Q 028260          178 LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIP  208 (211)
Q Consensus       178 ~~~~~~~d~~~~~~v~~~~~~~~~~~~~~~~  208 (211)
                        +    ....-.+..|.+|++..|.+++.+
T Consensus       155 --~----~~~~g~v~~d~~g~V~~~~ekp~~  179 (253)
T cd02524         155 --P----PGRFGELDLDDDGQVTSFTEKPQG  179 (253)
T ss_pred             --C----CCcccEEEECCCCCEEEEEECCCC
Confidence              1    111223566788888888887653

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=99.39  E-value=6.5e-12  Score=108.99  Aligned_cols=152  Identities=21%  Similarity=0.211  Sum_probs=104.5

Q ss_pred             CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cH-HHHHHH----HHcCCeEe
Q 028260           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DE-KIAECC----QQFGADVI  114 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e-~i~~~~----~~~~v~vi  114 (211)
                      ..+.||||.||.|+|+-      +|++.+++++|||.|.++++.++ ++++|++.++  ++ ......    .++|++++
T Consensus         8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~ns-Gi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~   86 (371)
T KOG1322|consen    8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINS-GITKIVLATQYNSESLNRHLSKAYGKELGVEIL   86 (371)
T ss_pred             cceeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhC-CCcEEEEEEecCcHHHHHHHHHHhhhccceEEE
Confidence            45779999999999983      59999999999999999999998 6999999996  34 223333    34577764


Q ss_pred             eCCc----ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeE
Q 028260          115 MTSE----SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK  190 (211)
Q Consensus       115 ~~~~----~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~  190 (211)
                      .--+    ..+|+++..+..|...  +...|||+.+|.  +-.-.+.++++.+.++ ++-.++.++++++    ..+.--
T Consensus        87 ~s~eteplgtaGpl~laR~~L~~~--~~~~ffVLnsDv--i~~~p~~~~vqfH~~~-gae~TI~~t~vde----pSkyGv  157 (371)
T KOG1322|consen   87 ASTETEPLGTAGPLALARDFLWVF--EDAPFFVLNSDV--ICRMPYKEMVQFHRAH-GAEITIVVTKVDE----PSKYGV  157 (371)
T ss_pred             EEeccCCCcccchHHHHHHHhhhc--CCCcEEEecCCe--eecCCHHHHHHHHHhc-CCceEEEEEeccC----ccccce
Confidence            4222    2344443333333322  223799999998  3344588899988653 3334444556544    334555


Q ss_pred             EEeCC-CccEEeeecCCCCC
Q 028260          191 CVVDN-HGYAIYFSRGLIPY  209 (211)
Q Consensus       191 ~v~~~-~~~~~~~~~~~~~~  209 (211)
                      ++.|+ .|++..|++++-+|
T Consensus       158 v~~d~~~grV~~F~EKPkd~  177 (371)
T KOG1322|consen  158 VVIDEDTGRVIRFVEKPKDL  177 (371)
T ss_pred             EEEecCCCceeEehhCchhh
Confidence            66777 89999999987654

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.37  E-value=2.5e-11  Score=111.88  Aligned_cols=151  Identities=17%  Similarity=0.199  Sum_probs=97.1

Q ss_pred             EEEEEecCCCCCCCC-------CccccccCC-eehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcCC---eEee
Q 028260           50 VVGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGA---DVIM  115 (211)
Q Consensus        50 i~aIIlA~G~ssRlg-------~K~ll~l~G-kpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~v---~vi~  115 (211)
                      +.+||||||.|+||.       +|+|+++.| +|||+|+++++... .+++++|+++.+.   +.+....++.   .++.
T Consensus         1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~-~~~~iviv~~~~~~~~~~~~l~~~~~~~~~~i~   79 (468)
T TIGR01479         1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGL-PCSSPLVICNEEHRFIVAEQLREIGKLASNIIL   79 (468)
T ss_pred             CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcC-CCcCcEEecCHHHHHHHHHHHHHcCCCcceEEe
Confidence            358999999999994       599999966 89999999999987 5889999887543   3445555543   2344


Q ss_pred             CCcccCCChHHHHHHHHhhc---cCCCEEEEEcCCCcCCCHHHHHHHHHHHH--hCCCeEEEEeeeeCCCCCCCCCCCeE
Q 028260          116 TSESCRNGTERCNEALQKLE---KKYDIVVNIQGDEPLIEPEIIDGVVKALQ--AAPDAVFSTAVTSLKPEDAFDPNRVK  190 (211)
Q Consensus       116 ~~~~~~g~~~si~~al~~l~---~~~d~vlv~~~D~Pli~~~~i~~li~~~~--~~~d~vv~v~~~~~~~~~~~d~~~~~  190 (211)
                      .+ ...|+..++..+...+.   ...+.++++++|+++.+.+.+.++++.+.  ...+.++.+..++..+++    ..-+
T Consensus        80 Ep-~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t----~YGy  154 (468)
T TIGR01479        80 EP-VGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPET----GYGY  154 (468)
T ss_pred             cc-cccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCC----CceE
Confidence            33 33454444444444442   12457999999999888888888887642  112445555544322211    2233


Q ss_pred             EEeCC------CccEEeeecCC
Q 028260          191 CVVDN------HGYAIYFSRGL  206 (211)
Q Consensus       191 ~v~~~------~~~~~~~~~~~  206 (211)
                      ...++      .+.+..|.+++
T Consensus       155 I~~~~~~~~~~~~~V~~f~EKP  176 (468)
T TIGR01479       155 IRRGEPLAGEDVYQVQRFVEKP  176 (468)
T ss_pred             EEeCCccCCCCceEEeEEEECC
Confidence            33342      24577777765

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=99.36  E-value=7.1e-12  Score=111.63  Aligned_cols=150  Identities=12%  Similarity=0.130  Sum_probs=96.6

Q ss_pred             cEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcCc--H-HHHHHHHH---cCCe---
Q 028260           49 RVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--E-KIAECCQQ---FGAD---  112 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~--e-~i~~~~~~---~~v~---  112 (211)
                      ...+||||+|.|+||.      +|+|+|++|+ |||+|+++.|.++ ++++|+|+++.  + .+++++.+   ++.+   
T Consensus         2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~-Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~   80 (369)
T TIGR02092         2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNA-GIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR   80 (369)
T ss_pred             cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhcc-CCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence            4569999999999994      5999999999 9999999999997 69999999974  4 77777742   3333   


Q ss_pred             ----E-eeCCccc--CCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCC
Q 028260          113 ----V-IMTSESC--RNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDA  183 (211)
Q Consensus       113 ----v-i~~~~~~--~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~  183 (211)
                          + +..++..  .|+..++..+.+.+.. ..+.++++.+|.  +....+.++++.+.+ ..+.++.+  +++.++ .
T Consensus        81 ~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~--l~~~dl~~ll~~h~~~~a~~tl~~--~~v~~~-~  155 (369)
T TIGR02092        81 DGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHM--VCNIDLKAVLKYHEETGKDITVVY--KKVKPA-D  155 (369)
T ss_pred             CcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCE--EEecCHHHHHHHHHHcCCCEEEEE--EecCHH-H
Confidence                1 2222221  1333456667776631 247899999998  445678888887754 34443333  332110 0


Q ss_pred             CCCCCeEEEeCCCccEEeeec
Q 028260          184 FDPNRVKCVVDNHGYAIYFSR  204 (211)
Q Consensus       184 ~d~~~~~~v~~~~~~~~~~~~  204 (211)
                      ..+....+..+.+|.+.+|.+
T Consensus       156 ~~~~g~vv~~~~~g~v~~~~~  176 (369)
T TIGR02092       156 ASEYDTILRFDESGKVKSIGQ  176 (369)
T ss_pred             ccccCcEEEEcCCCCEEeccc
Confidence            111223344555566656543

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.36  E-value=1.4e-11  Score=112.41  Aligned_cols=155  Identities=19%  Similarity=0.214  Sum_probs=101.9

Q ss_pred             CCcEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-c--C----
Q 028260           47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--G----  110 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~-~--~----  110 (211)
                      |+++.|||||||.|+||.      +|+|+|++|+ |||+|+++.+.++ ++++++|+++.  +.+.+++.. +  +    
T Consensus         1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~   79 (436)
T PLN02241          1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINS-GINKIYVLTQFNSASLNRHLSRAYNFGNGGN   79 (436)
T ss_pred             CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhC-CCCEEEEEeccCHHHHHHHHhccCCCCCCcc
Confidence            457889999999999994      5999999996 9999999999987 69999999863  566666543 1  1    


Q ss_pred             -----CeEeeCCc------ccCCChHHHHHHHHhhccC----CCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEee
Q 028260          111 -----ADVIMTSE------SCRNGTERCNEALQKLEKK----YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV  175 (211)
Q Consensus       111 -----v~vi~~~~------~~~g~~~si~~al~~l~~~----~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~  175 (211)
                           +.+....+      ...|...++..++..+...    .+.++++.+|+ +. ...+.++++.+.+. ++.+++..
T Consensus        80 ~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~-v~-~~dl~~ll~~h~~~-~a~~ti~~  156 (436)
T PLN02241         80 FGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDH-LY-RMDYMDFVQKHRES-GADITIAC  156 (436)
T ss_pred             cCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCe-EE-ccCHHHHHHHHHHc-CCCEEEEE
Confidence                 11111101      1234446666666554321    47899999998 44 45788888887543 23233333


Q ss_pred             eeCCCCCCCCCCCeEEEeCCCccEEeeecCCC
Q 028260          176 TSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       176 ~~~~~~~~~d~~~~~~v~~~~~~~~~~~~~~~  207 (211)
                      .++..+..  .+.-.+..|.++.+..|.+++.
T Consensus       157 ~~v~~~~~--~~ygvv~~d~~~~v~~~~Ekp~  186 (436)
T PLN02241        157 LPVDESRA--SDFGLMKIDDTGRIIEFSEKPK  186 (436)
T ss_pred             Eecchhhc--CcceEEEECCCCCEEEEEECCC
Confidence            33322111  1223345588889999998753

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=99.34  E-value=5.5e-11  Score=103.86  Aligned_cols=113  Identities=15%  Similarity=0.203  Sum_probs=81.0

Q ss_pred             EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH---c----------
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---F----------  109 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~---~----------  109 (211)
                      .+||+|||.|+||.      +|+++|++|+|+|+|+++.+..+ ++++|+|+++.  +.+.+++..   +          
T Consensus        10 ~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~   88 (302)
T PRK13389         10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR   88 (302)
T ss_pred             EEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhh
Confidence            38999999999993      59999999999999999999998 69999999863  445555431   0          


Q ss_pred             ------------CCeEeeCC-cccCCChHHHHHHHHhhccCCCEEEEEcCCCcC------CCHHHHHHHHHHHHhC
Q 028260          110 ------------GADVIMTS-ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPL------IEPEIIDGVVKALQAA  166 (211)
Q Consensus       110 ------------~v~vi~~~-~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pl------i~~~~i~~li~~~~~~  166 (211)
                                  +..+.+.. ....|...++..+.+.+.  ++.++++.+|.++      +....+.++++.+.+.
T Consensus        89 ~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~--~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~  162 (302)
T PRK13389         89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDET  162 (302)
T ss_pred             HHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcC--CCCEEEEeCcceecccccccccccHHHHHHHHHhc
Confidence                        11111111 112344466777777763  4678999999975      3457888999887543

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=99.34  E-value=3.2e-11  Score=100.11  Aligned_cols=149  Identities=15%  Similarity=0.120  Sum_probs=96.7

Q ss_pred             EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-c--------CCeE
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--------GADV  113 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~-~--------~v~v  113 (211)
                      .+||+|||.|+||.      +|+++|++|+|||+|+++.+.++ ++++|+|+++.  +.+.+...+ .        ++.+
T Consensus         2 ~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (216)
T cd02507           2 QAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKA-GVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV   80 (216)
T ss_pred             eEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHC-CCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence            48999999999994      59999999999999999999987 59999888863  344444332 1        1223


Q ss_pred             eeCCc-ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHH---HHhCCCeEEEEeeeeCCCCC---CCCC
Q 028260          114 IMTSE-SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA---LQAAPDAVFSTAVTSLKPED---AFDP  186 (211)
Q Consensus       114 i~~~~-~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~---~~~~~d~vv~v~~~~~~~~~---~~d~  186 (211)
                      ..... ...|...++..+.+.+   .+.++++.||.  +....+..++++   .....++.+++...+.....   -...
T Consensus        81 ~~~~~~~~~Gta~~l~~~~~~i---~~dflv~~gD~--i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (216)
T cd02507          81 ITSDLCESAGDALRLRDIRGLI---RSDFLLLSCDL--VSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTE  155 (216)
T ss_pred             EEccCCCCCccHHHHHHHhhcC---CCCEEEEeCCE--eecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCC
Confidence            33222 3345566777777766   34689999996  555578888864   23344555554433321111   1233


Q ss_pred             CCeEEEeCCC---ccEEeeecC
Q 028260          187 NRVKCVVDNH---GYAIYFSRG  205 (211)
Q Consensus       187 ~~~~~v~~~~---~~~~~~~~~  205 (211)
                      +....+.|++   +..+++...
T Consensus       156 ~~~~i~~d~~~~~~~~~~~~~~  177 (216)
T cd02507         156 EEDVIAVDSKTQRLLLLHYEED  177 (216)
T ss_pred             CCcEEEEcCCCCceEEEechhh
Confidence            4566777777   455555544

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

Probab=99.33  E-value=4.4e-12  Score=102.69  Aligned_cols=101  Identities=22%  Similarity=0.269  Sum_probs=80.8

Q ss_pred             EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCccc-C
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESC-R  121 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~-~  121 (211)
                      .|||+|||-||||-      +|+|+.++|+|||++.|+.|++. ++++|+|+++  .|+++-+..+++++.+++++-. -
T Consensus         2 nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~-gI~dI~IVvGYlkE~FeYLkdKy~vtLvyN~kY~~y   80 (231)
T COG4750           2 NAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREA-GIDDITIVVGYLKEQFEYLKDKYDVTLVYNPKYREY   80 (231)
T ss_pred             ceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHC-CCceEEEEeeehHHHHHHHHHhcCeEEEeCchHHhh
Confidence            38999999999993      69999999999999999999998 6999999998  4666666678899998887532 2


Q ss_pred             CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHH
Q 028260          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID  157 (211)
Q Consensus       122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~  157 (211)
                      +...++..|.+.+.  +  .-++++|. +++...+.
T Consensus        81 Nn~ySlyla~d~l~--n--tYiidsDn-yl~kNif~  111 (231)
T COG4750          81 NNIYSLYLARDFLN--N--TYIIDSDN-YLTKNIFL  111 (231)
T ss_pred             hhHHHHHHHHHHhc--c--cEEeccch-Hhhhhhhh
Confidence            45678889998884  2  35789998 55554443

>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.31  E-value=2.1e-11  Score=98.18  Aligned_cols=99  Identities=12%  Similarity=0.130  Sum_probs=75.3

Q ss_pred             CC-CccccccCC--eehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhh-ccCC
Q 028260           63 FE-GKPLVNILG--KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL-EKKY  138 (211)
Q Consensus        63 lg-~K~ll~l~G--kpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l-~~~~  138 (211)
                      || +|++++++|  +|||+|+++++..  .+++++|++++++  .+ ...++.++.+.....|++.++..|++.+ ..+.
T Consensus         1 mG~dK~ll~~~g~~~~ll~~~~~~l~~--~~~~iivv~~~~~--~~-~~~~~~~i~d~~~g~gpl~~~~~gl~~~~~~~~   75 (178)
T PRK00576          1 MGRDKATLPLPGGTTTLVEHVVGIVGQ--RCAPVFVMAAPGQ--PL-PELPAPVLRDELRGLGPLPATGRGLRAAAEAGA   75 (178)
T ss_pred             CCCCCEeeEeCCCCcCHHHHHHHHHhh--cCCEEEEECCCCc--cc-ccCCCCEeccCCCCCCcHHHHHHHHHHHHhcCC
Confidence            44 699999999  9999999998874  5899999986532  11 2335566554434457788888888764 2346


Q ss_pred             CEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028260          139 DIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (211)
Q Consensus       139 d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (211)
                      +++++++||||++++++++.+++.+.+.
T Consensus        76 ~~~lv~~~DmP~i~~~~i~~L~~~~~~~  103 (178)
T PRK00576         76 RLAFVCAVDMPYLTVELIDDLARPAAQT  103 (178)
T ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence            8999999999999999999999877543

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.27  E-value=1.8e-10  Score=99.94  Aligned_cols=134  Identities=16%  Similarity=0.235  Sum_probs=91.7

Q ss_pred             EEEEEecCCCCCCC-C------Ccccccc-CCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHH---HcCCe----Ee
Q 028260           50 VVGIIPARFASSRF-E------GKPLVNI-LGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ---QFGAD----VI  114 (211)
Q Consensus        50 i~aIIlA~G~ssRl-g------~K~ll~l-~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~---~~~v~----vi  114 (211)
                      +..+|||||+|+|| |      |||++.+ ++++|++.|++++......++++|+|+.++.....+   +.+..    ++
T Consensus         2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~il   81 (333)
T COG0836           2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAGII   81 (333)
T ss_pred             ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccceE
Confidence            46899999999999 4      6999999 559999999999998556789999999766443333   22222    44


Q ss_pred             eCCcccCCChHHHHHHHHhhcc--CCCEEEEEcCCCcCCCHHHHHHHHHHHHh--CCCeEEEEeeeeCCCCCCC
Q 028260          115 MTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAF  184 (211)
Q Consensus       115 ~~~~~~~g~~~si~~al~~l~~--~~d~vlv~~~D~Pli~~~~i~~li~~~~~--~~d~vv~v~~~~~~~~~~~  184 (211)
                      ..| .-+++..+++.|...+..  .+..++++++|+-.-+.+.+.+.+++..+  ....+++...++-.|++.+
T Consensus        82 lEP-~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGY  154 (333)
T COG0836          82 LEP-EGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGY  154 (333)
T ss_pred             ecc-CCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCc
Confidence            443 345566667655544432  23479999999977777778777766532  2236666665554444433

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.17  E-value=6.7e-10  Score=102.48  Aligned_cols=136  Identities=18%  Similarity=0.264  Sum_probs=89.8

Q ss_pred             CCcEEEEEecCCCCCCC-C------CccccccCC-eehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcC---Ce
Q 028260           47 RSRVVGIIPARFASSRF-E------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFG---AD  112 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRl-g------~K~ll~l~G-kpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~---v~  112 (211)
                      .|++.+||||||.|+|| |      +|+|+++.| +|||+++++++... .+.+.+|+|+..+   +.+.+...+   ..
T Consensus         3 ~~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~-~~~~~iivt~~~~~~~v~~ql~~~~~~~~~   81 (478)
T PRK15460          3 QSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGV-ECESPVVICNEQHRFIVAEQLRQLNKLTEN   81 (478)
T ss_pred             CCceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhC-CCCCcEEEeCHHHHHHHHHHHHhcCCcccc
Confidence            46678999999999999 3      599999954 79999999999876 4556667777543   333333333   24


Q ss_pred             EeeCCcccCCChHHHHHHHHhhcc---C-CCEEEEEcCCCcCCCHHHHHHHHHHHH--hCCCeEEEEeeeeCCCCCCC
Q 028260          113 VIMTSESCRNGTERCNEALQKLEK---K-YDIVVNIQGDEPLIEPEIIDGVVKALQ--AAPDAVFSTAVTSLKPEDAF  184 (211)
Q Consensus       113 vi~~~~~~~g~~~si~~al~~l~~---~-~d~vlv~~~D~Pli~~~~i~~li~~~~--~~~d~vv~v~~~~~~~~~~~  184 (211)
                      ++..| .-+++...+..|...+..   + .+.++++++|+-.-+.+.+.+.++...  ...+.++++..++-.|++.+
T Consensus        82 ii~EP-~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgy  158 (478)
T PRK15460         82 IILEP-AGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGY  158 (478)
T ss_pred             EEecC-CCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCC
Confidence            45544 334555555544444421   1 358999999997777777877766552  12266777776664454443

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.1e-09  Score=94.21  Aligned_cols=157  Identities=18%  Similarity=0.218  Sum_probs=104.8

Q ss_pred             CcEEEEEecCC--CCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEc--CcHHHHHHH----HHcCCeE
Q 028260           48 SRVVGIIPARF--ASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIAECC----QQFGADV  113 (211)
Q Consensus        48 m~i~aIIlA~G--~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt--~~e~i~~~~----~~~~v~v  113 (211)
                      |+..|+|+.||  +|+||.      +|+|.++.|.||++|-|+++++.+++.+|.++.  +++.+..+.    .++.+.+
T Consensus         1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pv   80 (407)
T KOG1460|consen    1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPV   80 (407)
T ss_pred             CceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccch
Confidence            67889999999  699994      599999999999999999999999999999887  455555544    3455444


Q ss_pred             -eeCCcccCCChHHHHHHHHhh-ccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEE
Q 028260          114 -IMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC  191 (211)
Q Consensus       114 -i~~~~~~~g~~~si~~al~~l-~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~  191 (211)
                       +.+.....|...++++.-+.+ ..+.+.++++.||.-.--|  +++|+++++. ....+....++++++...  +.--.
T Consensus        81 rYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfP--l~~ml~ahr~-~g~~~tll~tkvs~e~as--nfG~l  155 (407)
T KOG1460|consen   81 RYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFP--LQDMLEAHRR-YGGIGTLLVTKVSREQAS--NFGCL  155 (407)
T ss_pred             hhhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCc--HHHHHHHHhh-cCCceEEEEEEecHhHhh--ccCee
Confidence             222212223333444433333 2356889999999744334  7888888864 355666666766543333  34556


Q ss_pred             EeCCC-ccEEeeecCCCCC
Q 028260          192 VVDNH-GYAIYFSRGLIPY  209 (211)
Q Consensus       192 v~~~~-~~~~~~~~~~~~~  209 (211)
                      |-||+ |+++++..++.-|
T Consensus       156 V~dP~t~evlHYveKPsTf  174 (407)
T KOG1460|consen  156 VEDPSTGEVLHYVEKPSTF  174 (407)
T ss_pred             eecCCcCceEEeecCcchh
Confidence            66644 5577777766543

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=8.4e-11  Score=103.87  Aligned_cols=115  Identities=16%  Similarity=0.179  Sum_probs=84.5

Q ss_pred             CCCcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHH---HH-HcCC----
Q 028260           46 FRSRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC---CQ-QFGA----  111 (211)
Q Consensus        46 ~~m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~---~~-~~~v----  111 (211)
                      +|++..+||+|||.|+|||      +|+|+|++++|||+|.++-|.++ +|++++|++..++...+   +. .+..    
T Consensus         6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~-gfteiiVv~~e~e~~~i~~al~~~~~l~~~~   84 (433)
T KOG1462|consen    6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQA-GFTEIIVVVNEDEKLDIESALGSNIDLKKRP   84 (433)
T ss_pred             chHHhhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhc-CCeEEEEEecHHHHHHHHHHHhcCCcccccc
Confidence            4567789999999999997      69999999999999999999998 69999999986543333   21 1111    


Q ss_pred             -eEee--CCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028260          112 -DVIM--TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (211)
Q Consensus       112 -~vi~--~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (211)
                       .+.+  ......|..+++..-...+.  .+.|+++.||  |++--.+..+++.|+.
T Consensus        85 ~~v~ip~~~~~d~gtadsLr~Iy~kik--S~DflvlsCD--~Vtdv~l~~lvd~FR~  137 (433)
T KOG1462|consen   85 DYVEIPTDDNSDFGTADSLRYIYSKIK--SEDFLVLSCD--FVTDVPLQPLVDKFRA  137 (433)
T ss_pred             cEEEeecccccccCCHHHHhhhhhhhc--cCCEEEEecc--cccCCCcHHHHHHHhc
Confidence             1111  11122355566665555553  4579999999  6888888999999974

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=99.08  E-value=1.3e-09  Score=88.59  Aligned_cols=94  Identities=20%  Similarity=0.273  Sum_probs=75.5

Q ss_pred             eehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCH
Q 028260           74 KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP  153 (211)
Q Consensus        74 kpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~  153 (211)
                      +||++|+++.+.+. .+++++|+++++++..++..+++.++.++..  |..+++..|++.+..+.++++++.||+|++++
T Consensus        30 ~~ll~~~l~~l~~~-~~~~vvvv~~~~~~~~~~~~~~v~~i~~~~~--G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~  106 (195)
T TIGR03552        30 LAMLRDVITALRGA-GAGAVLVVSPDPALLEAARNLGAPVLRDPGP--GLNNALNAALAEAREPGGAVLILMADLPLLTP  106 (195)
T ss_pred             HHHHHHHHHHHHhc-CCCCEEEECCCHHHHHHHHhcCCEEEecCCC--CHHHHHHHHHHHhhccCCeEEEEeCCCCCCCH
Confidence            79999999999987 3578999998877777766778887766433  66789999998875445799999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEE
Q 028260          154 EIIDGVVKALQAAPDAVF  171 (211)
Q Consensus       154 ~~i~~li~~~~~~~d~vv  171 (211)
                      ++++++++.+.+ .+.++
T Consensus       107 ~~i~~l~~~~~~-~~~vi  123 (195)
T TIGR03552       107 RELKRLLAAATE-GDVVI  123 (195)
T ss_pred             HHHHHHHHhccc-CCEEE
Confidence            999999998754 34443

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.07  E-value=3.7e-09  Score=90.17  Aligned_cols=125  Identities=14%  Similarity=0.149  Sum_probs=89.3

Q ss_pred             cEEEEEecCCCCCCC-C-----CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc------------HHHHHHHH---
Q 028260           49 RVVGIIPARFASSRF-E-----GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD------------EKIAECCQ---  107 (211)
Q Consensus        49 ~i~aIIlA~G~ssRl-g-----~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~------------e~i~~~~~---  107 (211)
                      -..|||||||.|+|| |     +|-|+|+-+||+|+|+++.+.++ ++++|+++|+.            .+++..++   
T Consensus         4 irKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~a-GIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~   82 (291)
T COG1210           4 IRKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAA-GIEEILIVTGRGKRAIEDHFDTSYELENTLEKRG   82 (291)
T ss_pred             ccEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHc-CCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhC
Confidence            346999999999999 4     69999999999999999999998 69999999851            12222211   


Q ss_pred             ---------Hc--CCeEeeCCccc-CCChHHHHHHHHhhccCCCEEEEEcCCCcCCC-HHHHHHHHHHHHhCCCeEEEEe
Q 028260          108 ---------QF--GADVIMTSESC-RNGTERCNEALQKLEKKYDIVVNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTA  174 (211)
Q Consensus       108 ---------~~--~v~vi~~~~~~-~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~-~~~i~~li~~~~~~~d~vv~v~  174 (211)
                               +.  .+++.+..+.. .|-..++..|=..+  .++.|.|+.+|.-..+ ...+..|++.+.+...+++++.
T Consensus        83 K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~v--g~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~  160 (291)
T COG1210          83 KRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFV--GDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVE  160 (291)
T ss_pred             HHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhc--CCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEE
Confidence                     11  23443322222 33345665565656  4678999999986665 5688999999987777888877


Q ss_pred             ee
Q 028260          175 VT  176 (211)
Q Consensus       175 ~~  176 (211)
                      ..
T Consensus       161 ev  162 (291)
T COG1210         161 EV  162 (291)
T ss_pred             EC
Confidence            43

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.91  E-value=1.1e-08  Score=91.36  Aligned_cols=155  Identities=18%  Similarity=0.184  Sum_probs=109.9

Q ss_pred             CCcEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcCcHH--HHHHHH---Hc-----
Q 028260           47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDDEK--IAECCQ---QF-----  109 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~e~--i~~~~~---~~-----  109 (211)
                      +.++.++|||||.|+||.      .|+-.|++|| -+|..+|..+.++ ++.+|.|.|+...  +.....   .+     
T Consensus         3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNS-Gi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~   81 (393)
T COG0448           3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNS-GIRRIGVLTQYKSHSLNDHIGRGWPWDLDRK   81 (393)
T ss_pred             ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEccccccc-CCCeEEEEeccchhHHHHHhhCCCccccccc
Confidence            346789999999999995      4999999996 8999999999998 6999999997432  222221   11     


Q ss_pred             --CCeEee------CCcccCCChHHHHHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHH-hCCCeEEEEeeeeCC
Q 028260          110 --GADVIM------TSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQ-AAPDAVFSTAVTSLK  179 (211)
Q Consensus       110 --~v~vi~------~~~~~~g~~~si~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~-~~~d~vv~v~~~~~~  179 (211)
                        ++.++.      .+.+++|+..++++=+..+. .+.|+++++.+|+  +-.-+++.+++.+. .++|.++++.  ++.
T Consensus        82 ~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDh--IYkmDy~~ml~~H~~~gadiTv~~~--~Vp  157 (393)
T COG0448          82 NGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDH--IYKMDYSDMLDFHIESGADVTVAVK--EVP  157 (393)
T ss_pred             cCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCE--EEecCHHHHHHHHHHcCCCEEEEEE--ECC
Confidence              222222      11256677777776555554 3578999999998  55778999999885 4566665554  443


Q ss_pred             CCCCCCCCCeEEEeCCCccEEeeecCCCC
Q 028260          180 PEDAFDPNRVKCVVDNHGYAIYFSRGLIP  208 (211)
Q Consensus       180 ~~~~~d~~~~~~v~~~~~~~~~~~~~~~~  208 (211)
                      .++..  +.-..-.|++|++..|.+++.+
T Consensus       158 ~~eas--~fGim~~D~~~~i~~F~eKp~~  184 (393)
T COG0448         158 REEAS--RFGVMNVDENGRIIEFVEKPAD  184 (393)
T ss_pred             hHhhh--hcCceEECCCCCEEeeeeccCc
Confidence            32222  1236778999999999998765

>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes

Probab=98.51  E-value=6.2e-06  Score=70.96  Aligned_cols=107  Identities=18%  Similarity=0.121  Sum_probs=70.6

Q ss_pred             EEEEEecCCCCCCCC---CccccccC---CeehHHHHHHHHHcC-------CCCCeEEEEcC--cHHHHHHHHHcC----
Q 028260           50 VVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLA-------TTLDHLVVATD--DEKIAECCQQFG----  110 (211)
Q Consensus        50 i~aIIlA~G~ssRlg---~K~ll~l~---GkpLl~~~i~~l~~~-------~~id~IVVvt~--~e~i~~~~~~~~----  110 (211)
                      +++||||||.|+||+   +|++++++   |+|++++.++++...       ..+..++++++  ++.+.++++++.    
T Consensus         1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~~~   80 (266)
T cd04180           1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQKNS   80 (266)
T ss_pred             CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCCCC
Confidence            368999999999997   69999999   999999999999863       23555555554  466777776643    


Q ss_pred             -CeEeeCC-------------------cccCCChHHHHHHHHh------hc-cCCCEEEEEcCCCcCCCHHHH
Q 028260          111 -ADVIMTS-------------------ESCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPLIEPEII  156 (211)
Q Consensus       111 -v~vi~~~-------------------~~~~g~~~si~~al~~------l~-~~~d~vlv~~~D~Pli~~~~i  156 (211)
                       +.++...                   .....+...++.+|..      +. ...+++.+...|.++....+-
T Consensus        81 ~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP  153 (266)
T cd04180          81 YVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADP  153 (266)
T ss_pred             ceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCH
Confidence             1112110                   0112233344444432      21 346899999999988866333

This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o

>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc

Probab=98.25  E-value=3.5e-05  Score=68.09  Aligned_cols=111  Identities=20%  Similarity=0.241  Sum_probs=72.9

Q ss_pred             cEEEEEecCCCCCCCC---CccccccC---CeehHHHHHHHHHcCC-----------CCCeEEEEcC---cHHHHHHHHH
Q 028260           49 RVVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLAT-----------TLDHLVVATD---DEKIAECCQQ  108 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg---~K~ll~l~---GkpLl~~~i~~l~~~~-----------~id~IVVvt~---~e~i~~~~~~  108 (211)
                      ++.+||||||.|+||+   +|++++++   |+|++++.+++++...           .+ ++++.|+   ++.+.+++++
T Consensus        15 ~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t~~~t~~~~~~   93 (323)
T cd04193          15 KVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEATHEETRKFFKE   93 (323)
T ss_pred             CEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhHhHHHHHHHHh
Confidence            5789999999999997   69999997   7999999999998742           23 4456554   5667777764


Q ss_pred             ---cCC---eE--eeCC----------------c---ccCCChHHHHHHHHh------hc-cCCCEEEEEcCCCcCC---
Q 028260          109 ---FGA---DV--IMTS----------------E---SCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPLI---  151 (211)
Q Consensus       109 ---~~v---~v--i~~~----------------~---~~~g~~~si~~al~~------l~-~~~d~vlv~~~D~Pli---  151 (211)
                         +|.   .+  +..+                .   ..++|...++.+|..      +. ..-+++.+...|.++.   
T Consensus        94 ~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~~~  173 (323)
T cd04193          94 NNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKVA  173 (323)
T ss_pred             CCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccccccc
Confidence               233   22  2110                0   112344455555543      21 2468999999999864   


Q ss_pred             CHHHHHHHH
Q 028260          152 EPEIIDGVV  160 (211)
Q Consensus       152 ~~~~i~~li  160 (211)
                      ++..+--++
T Consensus       174 Dp~~lG~~~  182 (323)
T cd04193         174 DPVFIGFCI  182 (323)
T ss_pred             CHHHhHHHH
Confidence            555554444

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.

>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional

Probab=98.11  E-value=4.2e-05  Score=70.89  Aligned_cols=113  Identities=23%  Similarity=0.225  Sum_probs=73.7

Q ss_pred             CcEEEEEecCCCCCCCC---Ccccccc---CCeehHHHHHHHHHcCC-------------CCCeEEEEcC---cHHHHHH
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT-------------TLDHLVVATD---DEKIAEC  105 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l---~GkpLl~~~i~~l~~~~-------------~id~IVVvt~---~e~i~~~  105 (211)
                      .++.+||||||.|+||+   +|+++++   .|+|++++.++++....             .+ +++|.|+   ++.+.++
T Consensus       105 gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~I-p~~IMTS~~t~~~t~~~  183 (482)
T PTZ00339        105 GEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTI-YILVLTSSFNHDQTRQF  183 (482)
T ss_pred             CCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCC-CEEEEeCcchHHHHHHH
Confidence            35889999999999997   6999999   58999999999998641             23 4455543   4666676


Q ss_pred             HHHc---CC-----eEeeCC-----------------c---ccCCChHHHHHHHHh------hc-cCCCEEEEEcCCCcC
Q 028260          106 CQQF---GA-----DVIMTS-----------------E---SCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPL  150 (211)
Q Consensus       106 ~~~~---~v-----~vi~~~-----------------~---~~~g~~~si~~al~~------l~-~~~d~vlv~~~D~Pl  150 (211)
                      +++.   |.     .++...                 .   ..++|...++.+|..      +. ..-+++.+...|.++
T Consensus       184 f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L  263 (482)
T PTZ00339        184 LEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNIL  263 (482)
T ss_pred             HHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCccc
Confidence            6532   21     111110                 0   012334456666543      21 236799999999995


Q ss_pred             C---CHHHHHHHHH
Q 028260          151 I---EPEIIDGVVK  161 (211)
Q Consensus       151 i---~~~~i~~li~  161 (211)
                      .   +|..+-.+++
T Consensus       264 ~k~~DP~flG~~~~  277 (482)
T PTZ00339        264 AKVLDPEFIGLASS  277 (482)
T ss_pred             ccccCHHHhHHHHH
Confidence            5   6666665554

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=0.00047  Score=64.96  Aligned_cols=151  Identities=17%  Similarity=0.289  Sum_probs=102.8

Q ss_pred             CCcEEEEEecCCCCCCC-C-----CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH--cC--CeE-
Q 028260           47 RSRVVGIIPARFASSRF-E-----GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ--FG--ADV-  113 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRl-g-----~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~--~~--v~v-  113 (211)
                      ..++.||++|=..-+|| |     ++.|+|+.+.|||+|+++-|..+ ++.+++|.+.  ..++.++.++  +.  ... 
T Consensus        22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~a-gV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~  100 (673)
T KOG1461|consen   22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERA-GVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFI  100 (673)
T ss_pred             ccceEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhc-CceEEEEEecccHHHHHHHHhhccccccccce
Confidence            35788999999999998 3     58999999999999999999987 6999999885  6777877764  11  111 


Q ss_pred             eeCCcccCCChHHHHHHHHhhcc---CCCEEEEEcCCCcCCCHHHHHHHHHHH----HhCCCeEEEEeeeeCCCCCCCCC
Q 028260          114 IMTSESCRNGTERCNEALQKLEK---KYDIVVNIQGDEPLIEPEIIDGVVKAL----QAAPDAVFSTAVTSLKPEDAFDP  186 (211)
Q Consensus       114 i~~~~~~~g~~~si~~al~~l~~---~~d~vlv~~~D~Pli~~~~i~~li~~~----~~~~d~vv~v~~~~~~~~~~~d~  186 (211)
                      +..  ...+...++--+|+.+..   ..+.|+++.+|.  ++.-.+.++++.+    ++..+++++....+-+  +....
T Consensus       101 v~t--i~s~~~~S~GDamR~id~k~litgDFiLVsgd~--vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~s--t~~~~  174 (673)
T KOG1461|consen  101 VVT--ICSGESRSVGDAMRDIDEKQLITGDFILVSGDT--VSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESS--TRETT  174 (673)
T ss_pred             EEE--EcCCCcCcHHHHHHHHHhcceeecceEEEeCCe--eecCchHHHHHHHHHHhhhCccceEEEEEeccc--cccCC
Confidence            110  111223345566766642   246788899997  5567889999988    3456777766554422  22334


Q ss_pred             CCeEEEeCCCcc-EEeeec
Q 028260          187 NRVKCVVDNHGY-AIYFSR  204 (211)
Q Consensus       187 ~~~~~v~~~~~~-~~~~~~  204 (211)
                      +.+..++|+.-. .++|.+
T Consensus       175 ~~~~~avd~~T~~ll~yq~  193 (673)
T KOG1461|consen  175 EQVVIAVDSRTSRLLHYQK  193 (673)
T ss_pred             cceEEEEcCCcceEEeehh
Confidence            566666666544 567765

>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]

Probab=97.51  E-value=0.00063  Score=55.55  Aligned_cols=108  Identities=23%  Similarity=0.342  Sum_probs=77.5

Q ss_pred             EEEecC---CCCCCCCC-------ccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccC
Q 028260           52 GIIPAR---FASSRFEG-------KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCR  121 (211)
Q Consensus        52 aIIlA~---G~ssRlg~-------K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~  121 (211)
                      +|||-.   +.-||+.+       |.+.    .-||.+++.++...  +.+|.|++.++++...+.++  ++...    .
T Consensus         3 ~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~--~~~i~Vvtpde~~~~~a~~~--~vl~d----~   70 (210)
T COG1920           3 AIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV--LGEITVVTPDEEVLVPATKL--EVLAD----P   70 (210)
T ss_pred             eEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh--cCCceEEcCChHhhhhcccc--eeeec----c
Confidence            466643   45577752       5554    57899999999853  78999999888766655443  44443    1


Q ss_pred             CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEE
Q 028260          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST  173 (211)
Q Consensus       122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v  173 (211)
                      +-..++.++++.++.. +-++++++|.|+++++.|+++++.... +|.+++-
T Consensus        71 dLN~Ai~aa~~~~~~p-~~v~vvmaDLPLl~~~~i~~~~~~~~d-~dvviaP  120 (210)
T COG1920          71 DLNTAINAALDEIPLP-SEVIVVMADLPLLSPEHIERALSAAKD-ADVVIAP  120 (210)
T ss_pred             chHHHHHHHHhhCCCC-cceEEEecccccCCHHHHHHHHHhcCC-CcEEEec
Confidence            2235678888887643 679999999999999999999988754 5666653

>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis

Probab=97.46  E-value=0.00016  Score=60.41  Aligned_cols=109  Identities=27%  Similarity=0.404  Sum_probs=59.8

Q ss_pred             EEEEecCCCC---CCCCC-------ccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHH-HcCCeEeeCCcc
Q 028260           51 VGIIPARFAS---SRFEG-------KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ-QFGADVIMTSES  119 (211)
Q Consensus        51 ~aIIlA~G~s---sRlg~-------K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~-~~~v~vi~~~~~  119 (211)
                      .+|||....+   ||+.+       ..|.    +.|+.+++.++..   ++ ++|++.++.+..++. .+++.++..+  
T Consensus         2 ~~VIPvK~~~~aKSRLs~~L~~~eR~~La----~aMl~Dvl~al~~---v~-v~vVs~d~~v~~~a~~~~g~~vl~d~--   71 (217)
T PF01983_consen    2 RAVIPVKPLARAKSRLSPVLSPEEREALA----LAMLRDVLAALRA---VD-VVVVSRDPEVAALARARLGAEVLPDP--   71 (217)
T ss_dssp             EEEEE---TT-TTGGGTTTS-HHHHHHHH----HHHHHHHHHHHHH----S-EEEEES--S-TTTTT---SSEEEE----
T ss_pred             eEEEEcCCCCccccccCccCCHHHHHHHH----HHHHHHHHHHHHh---cC-eEEeccchhhhhhhhhccCCeEecCC--
Confidence            4788876544   67741       2222    5789999999976   66 888888777776655 6788887654  


Q ss_pred             cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      ..|-..++..++...  ..+.++++++|.|+++++.|+.+++...+ .+.+++
T Consensus        72 ~~gLN~Al~~a~~~~--~~~~vlvl~aDLPll~~~dl~~~l~~~~~-~~vvia  121 (217)
T PF01983_consen   72 GRGLNAALNAALAAA--GDDPVLVLPADLPLLTPEDLDALLAAAGR-ADVVIA  121 (217)
T ss_dssp             -S-HHHHHHHHHH-H----S-EEEE-S--TT--HHHHHHHCT-SS---SEEEE
T ss_pred             CCCHHHHHHHHHhcc--CCCceEEeecCCccCCHHHHHHHHhccCC-CCEEEe
Confidence            223335566664433  46789999999999999999999987643 355554

One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.

>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide

Probab=97.36  E-value=0.0088  Score=49.51  Aligned_cols=96  Identities=23%  Similarity=0.314  Sum_probs=68.0

Q ss_pred             CCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCc
Q 028260           72 LGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEP  149 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~P  149 (211)
                      ++...|+.+|+.+...  .++|+|+-+  .+...++++.++++++..  ...|...+...|++.+  ..|+++++++|. 
T Consensus        10 Ne~~~l~~~l~sl~~~--~~eiivvD~gStD~t~~i~~~~~~~v~~~--~~~g~~~~~n~~~~~a--~~d~vl~lDaD~-   82 (229)
T cd02511          10 NEERNIERCLESVKWA--VDEIIVVDSGSTDRTVEIAKEYGAKVYQR--WWDGFGAQRNFALELA--TNDWVLSLDADE-   82 (229)
T ss_pred             CcHHHHHHHHHHHhcc--cCEEEEEeCCCCccHHHHHHHcCCEEEEC--CCCChHHHHHHHHHhC--CCCEEEEEeCCc-
Confidence            4456788888888643  478887764  355667777888887665  2234445556688876  478999999998 


Q ss_pred             CCCHHHHHHHHHHHHhCCCeEEEEe
Q 028260          150 LIEPEIIDGVVKALQAAPDAVFSTA  174 (211)
Q Consensus       150 li~~~~i~~li~~~~~~~d~vv~v~  174 (211)
                      .++++.++.+.+.+.+++...+...
T Consensus        83 ~~~~~~~~~l~~~~~~~~~~~~~~~  107 (229)
T cd02511          83 RLTPELADEILALLATDDYDGYYVP  107 (229)
T ss_pred             CcCHHHHHHHHHHHhCCCCcEEEEE
Confidence            7899999999998876554333333

UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

Probab=97.25  E-value=0.012  Score=47.80  Aligned_cols=92  Identities=13%  Similarity=0.236  Sum_probs=61.8

Q ss_pred             ehHHHHHHHHHcCCCCC---eEEEEcC--cHHHHHHHHHcCC----eEeeCCcccCCChHHHHHHHHhhccCCCEEEEEc
Q 028260           75 PMIQRTWERSKLATTLD---HLVVATD--DEKIAECCQQFGA----DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ  145 (211)
Q Consensus        75 pLl~~~i~~l~~~~~id---~IVVvt~--~e~i~~~~~~~~v----~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~  145 (211)
                      .+++.+++.+.+...-+   +|+|+.|  .+...++++.+..    .++..+....+....+..|++..  +.|++++++
T Consensus        15 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~a--~~d~i~~lD   92 (234)
T cd06421          15 EIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNALAHT--TGDFVAILD   92 (234)
T ss_pred             HHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHHHHhC--CCCEEEEEc
Confidence            46788888888654433   6777664  3555566655543    44443322222234567788876  589999999


Q ss_pred             CCCcCCCHHHHHHHHHHHHhCCCe
Q 028260          146 GDEPLIEPEIIDGVVKALQAAPDA  169 (211)
Q Consensus       146 ~D~Pli~~~~i~~li~~~~~~~d~  169 (211)
                      +|. .++++.+..+++.+.++++.
T Consensus        93 ~D~-~~~~~~l~~l~~~~~~~~~~  115 (234)
T cd06421          93 ADH-VPTPDFLRRTLGYFLDDPKV  115 (234)
T ss_pred             ccc-CcCccHHHHHHHHHhcCCCe
Confidence            998 77999999999998764443

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

Probab=97.20  E-value=0.01  Score=52.36  Aligned_cols=117  Identities=15%  Similarity=0.170  Sum_probs=70.7

Q ss_pred             CCCCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHH----HHHHHHHcCCeEee-C
Q 028260           44 KNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEK----IAECCQQFGADVIM-T  116 (211)
Q Consensus        44 ~~~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~----i~~~~~~~~v~vi~-~  116 (211)
                      ++.++++.+|||+--....+          ..+++.+.+.+.+...--+|+|+-|  .+.    +++..++.+..+.. .
T Consensus         2 ~~~~~~vSVVIP~yNE~~~i----------~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~   71 (325)
T PRK10714          2 IHPIKKVSVVIPVYNEQESL----------PELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAIL   71 (325)
T ss_pred             CCCCCeEEEEEcccCchhhH----------HHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEE
Confidence            45667789999985444432          2344444444443322236766654  222    22333333444421 1


Q ss_pred             CcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEE
Q 028260          117 SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST  173 (211)
Q Consensus       117 ~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v  173 (211)
                      ...-.|...++..|+++.  +.|+++++++|. -.+++.+.++++.+.++.|.+.+.
T Consensus        72 ~~~n~G~~~A~~~G~~~A--~gd~vv~~DaD~-q~~p~~i~~l~~~~~~~~DvV~~~  125 (325)
T PRK10714         72 LNRNYGQHSAIMAGFSHV--TGDLIITLDADL-QNPPEEIPRLVAKADEGYDVVGTV  125 (325)
T ss_pred             eCCCCCHHHHHHHHHHhC--CCCEEEEECCCC-CCCHHHHHHHHHHHHhhCCEEEEE
Confidence            112235456778888887  579999999999 479999999999987667766443

>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase

Probab=97.08  E-value=0.0076  Score=56.13  Aligned_cols=113  Identities=19%  Similarity=0.267  Sum_probs=70.4

Q ss_pred             CcEEEEEecCCCCCCCC---Ccccccc---CCeehHHHHHHHHHcCC-------------CCC-eEEEEcC---cHHHHH
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT-------------TLD-HLVVATD---DEKIAE  104 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l---~GkpLl~~~i~~l~~~~-------------~id-~IVVvt~---~e~i~~  104 (211)
                      .++.+|+||||.|+|||   +|-+.++   .|+++++...+++....             .+. .++|-|+   ++...+
T Consensus       115 gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~  194 (493)
T PLN02435        115 GKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRK  194 (493)
T ss_pred             CCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHH
Confidence            46889999999999998   5988866   58999999999875321             111 4456554   466677


Q ss_pred             HHHHc---C-----CeEeeCC-------------------cccCCChHHHHHHHHh------hc-cCCCEEEEEcCCCcC
Q 028260          105 CCQQF---G-----ADVIMTS-------------------ESCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPL  150 (211)
Q Consensus       105 ~~~~~---~-----v~vi~~~-------------------~~~~g~~~si~~al~~------l~-~~~d~vlv~~~D~Pl  150 (211)
                      +++++   |     +.++...                   ...+.|...++.+|..      +. ..-+++.+...|.++
T Consensus       195 ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L  274 (493)
T PLN02435        195 FFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNAL  274 (493)
T ss_pred             HHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEeccccc
Confidence            76643   2     2222110                   0122344456666654      21 246899999999986


Q ss_pred             C---CHHHHHHHH
Q 028260          151 I---EPEIIDGVV  160 (211)
Q Consensus       151 i---~~~~i~~li  160 (211)
                      .   +|..+--++
T Consensus       275 ~~~~DP~flG~~~  287 (493)
T PLN02435        275 VRVADPTFLGYFI  287 (493)
T ss_pred             ccccCHHHHHHHH
Confidence            4   555544444

>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose

Probab=97.05  E-value=0.002  Score=56.43  Aligned_cols=62  Identities=16%  Similarity=0.248  Sum_probs=47.2

Q ss_pred             CcEEEEEecCCCCCCCC---Ccccccc-CCeehHHHHHHHHHcCC-----CCCeEEEEcC---cHHHHHHHHHcC
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLAT-----TLDHLVVATD---DEKIAECCQQFG  110 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l-~GkpLl~~~i~~l~~~~-----~id~IVVvt~---~e~i~~~~~~~~  110 (211)
                      .++++|++|||.|||||   +|.++++ .|+++++..+++++...     .+ .++|-|+   +++..+++++++
T Consensus         2 ~kvavl~LaGG~GTRLG~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~i-Pl~iMtS~~T~~~T~~~l~~~~   75 (300)
T cd00897           2 NKLVVLKLNGGLGTSMGCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDV-PLVLMNSFNTDEDTKKILKKYA   75 (300)
T ss_pred             CcEEEEEecCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCc-eEEEECCCcchHHHHHHHHHcC
Confidence            36889999999999997   5999999 68999999999987421     13 4556553   566777776653

UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.

>PLN02474 UTP--glucose-1-phosphate uridylyltransferase

Probab=97.05  E-value=0.031  Score=51.80  Aligned_cols=64  Identities=6%  Similarity=0.104  Sum_probs=47.1

Q ss_pred             CCcEEEEEecCCCCCCCC---Ccccccc-CCeehHHHHHHHHHcCC---CCC-eEEEEcC---cHHHHHHHHHcC
Q 028260           47 RSRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLAT---TLD-HLVVATD---DEKIAECCQQFG  110 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg---~K~ll~l-~GkpLl~~~i~~l~~~~---~id-~IVVvt~---~e~i~~~~~~~~  110 (211)
                      ..++++|.||||.|+|||   +|.++++ .|+++++..++++....   +.+ ..++-++   +++..+++++++
T Consensus        77 L~k~avlkLnGGlGTrmG~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~  151 (469)
T PLN02474         77 LDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYT  151 (469)
T ss_pred             HhcEEEEEecCCcccccCCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcC
Confidence            357899999999999998   6999999 68999998888886421   222 4455553   566677776654

>PRK11204 N-glycosyltransferase; Provisional

Probab=97.02  E-value=0.041  Score=49.62  Aligned_cols=104  Identities=16%  Similarity=0.212  Sum_probs=66.7

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCC-CeEEEEcC--cHHHHH----HHHHcC-CeEeeCCcc
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL-DHLVVATD--DEKIAE----CCQQFG-ADVIMTSES  119 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~i-d~IVVvt~--~e~i~~----~~~~~~-v~vi~~~~~  119 (211)
                      ++++++||+-.              +...+..+++.+.+.... .+|+|+.|  .++..+    +..++. +.++..+ .
T Consensus        54 p~vsViIp~yn--------------e~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~-~  118 (420)
T PRK11204         54 PGVSILVPCYN--------------EGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLA-E  118 (420)
T ss_pred             CCEEEEEecCC--------------CHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcC-C
Confidence            45777777743              335677788887754322 26766654  233333    333333 4444323 2


Q ss_pred             cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCe
Q 028260          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA  169 (211)
Q Consensus       120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~  169 (211)
                      -.|...++..|++..  +.|+++++|+|. .++++.+..+++.++++++.
T Consensus       119 n~Gka~aln~g~~~a--~~d~i~~lDaD~-~~~~d~L~~l~~~~~~~~~v  165 (420)
T PRK11204        119 NQGKANALNTGAAAA--RSEYLVCIDGDA-LLDPDAAAYMVEHFLHNPRV  165 (420)
T ss_pred             CCCHHHHHHHHHHHc--CCCEEEEECCCC-CCChhHHHHHHHHHHhCCCe
Confidence            235556777888876  589999999999 78999999999999655543

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=97.02  E-value=0.033  Score=46.03  Aligned_cols=102  Identities=21%  Similarity=0.284  Sum_probs=64.7

Q ss_pred             CCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCC---CeEEEEcC--cHHHHHHHHHcC---CeEeeCC
Q 028260           46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL---DHLVVATD--DEKIAECCQQFG---ADVIMTS  117 (211)
Q Consensus        46 ~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~i---d~IVVvt~--~e~i~~~~~~~~---v~vi~~~  117 (211)
                      .++++.+||++-+..              ..|..+++.+.+...-   -+++|+.|  ++...++++++.   +.++..+
T Consensus        27 ~~~~isVvip~~n~~--------------~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i~~~   92 (251)
T cd06439          27 YLPTVTIIIPAYNEE--------------AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLRFP   92 (251)
T ss_pred             CCCEEEEEEecCCcH--------------HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEEEcC
Confidence            345677888875433              4455566665543222   25766664  344445554443   4455443


Q ss_pred             cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028260          118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (211)
Q Consensus       118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (211)
                       ...|...++..|++..  ..|+++++++|. .++++.+.++++.+.+
T Consensus        93 -~~~g~~~a~n~gi~~a--~~d~i~~lD~D~-~~~~~~l~~l~~~~~~  136 (251)
T cd06439          93 -ERRGKAAALNRALALA--TGEIVVFTDANA-LLDPDALRLLVRHFAD  136 (251)
T ss_pred             -CCCChHHHHHHHHHHc--CCCEEEEEcccc-CcCHHHHHHHHHHhcC
Confidence             2345556677888877  469999999999 5679999999999863

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose

Probab=97.00  E-value=0.00098  Score=58.70  Aligned_cols=103  Identities=16%  Similarity=0.118  Sum_probs=67.2

Q ss_pred             EEEEecCCCCCCCC---Ccccccc---CCeehHHHHHHHHHcCCC-------C-CeEEEEcC---cHHHHHHHHHc---C
Q 028260           51 VGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLATT-------L-DHLVVATD---DEKIAECCQQF---G  110 (211)
Q Consensus        51 ~aIIlA~G~ssRlg---~K~ll~l---~GkpLl~~~i~~l~~~~~-------i-d~IVVvt~---~e~i~~~~~~~---~  110 (211)
                      ++|++|||.|+|||   +|-++++   .|+++++..+++++....       . =.++|.|+   +++..++++++   |
T Consensus         2 a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~yFG   81 (315)
T cd06424           2 VFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENNYFG   81 (315)
T ss_pred             EEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCCccC
Confidence            57899999999997   5999998   689999999999875321       1 14566664   56677777642   2


Q ss_pred             C-----eEeeC------------------Cc----ccCCChHHHHHHHHhh-------ccCCCEEEEEcCCCcCCCH
Q 028260          111 A-----DVIMT------------------SE----SCRNGTERCNEALQKL-------EKKYDIVVNIQGDEPLIEP  153 (211)
Q Consensus       111 v-----~vi~~------------------~~----~~~g~~~si~~al~~l-------~~~~d~vlv~~~D~Pli~~  153 (211)
                      .     .++..                  .+    ..++|...++.+|..-       ...-+++.+...|.++...
T Consensus        82 l~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~  158 (315)
T cd06424          82 LEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFK  158 (315)
T ss_pred             CCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhc
Confidence            1     11110                  00    1123444566666542       1246799999999998765

UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f

>PLN02830 UDP-sugar pyrophosphorylase

Probab=96.88  E-value=0.018  Score=55.15  Aligned_cols=115  Identities=14%  Similarity=0.051  Sum_probs=73.1

Q ss_pred             CcEEEEEecCCCCCCCC---Ccccccc---CCeehHHHHHHHHHcCC-----------CCCeEEEEcC---cHHHHHHHH
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT-----------TLDHLVVATD---DEKIAECCQ  107 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l---~GkpLl~~~i~~l~~~~-----------~id~IVVvt~---~e~i~~~~~  107 (211)
                      .++++|+||||.|+|||   +|-++++   .|+++++..++++...+           ..-.++|-|+   +++..++++
T Consensus       127 ~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~  206 (615)
T PLN02830        127 GNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLE  206 (615)
T ss_pred             CcEEEEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHH
Confidence            47889999999999997   5989986   58999999999986531           1114566664   566777776


Q ss_pred             HcC--------CeEeeC--------C----------c----ccCCChHHHHHHHHhh-------ccCCCEEEEEcCCCcC
Q 028260          108 QFG--------ADVIMT--------S----------E----SCRNGTERCNEALQKL-------EKKYDIVVNIQGDEPL  150 (211)
Q Consensus       108 ~~~--------v~vi~~--------~----------~----~~~g~~~si~~al~~l-------~~~~d~vlv~~~D~Pl  150 (211)
                      ++.        +.++..        +          +    ..++|...++.+|..-       ...-+++++...|.|+
T Consensus       207 ~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L  286 (615)
T PLN02830        207 RNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGL  286 (615)
T ss_pred             HCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchh
Confidence            532        111111        0          0    0223344566655432       1245899999999988


Q ss_pred             CCHHHHHHHHHHH
Q 028260          151 IEPEIIDGVVKAL  163 (211)
Q Consensus       151 i~~~~i~~li~~~  163 (211)
                      +...+ -.++..+
T Consensus       287 ~~~Ad-p~flG~~  298 (615)
T PLN02830        287 VFKAI-PAALGVS  298 (615)
T ss_pred             hhccc-HHHhHHH
Confidence            86655 3344443

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis

Probab=96.84  E-value=0.041  Score=43.59  Aligned_cols=100  Identities=20%  Similarity=0.262  Sum_probs=66.3

Q ss_pred             CCeehHHHHHHHHHcCCC---CCeEEEEcC--cHHHHHHHHHcCCeEeeCCcc-cCCChHHHHHHHHhhc---cCCCEEE
Q 028260           72 LGKPMIQRTWERSKLATT---LDHLVVATD--DEKIAECCQQFGADVIMTSES-CRNGTERCNEALQKLE---KKYDIVV  142 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~---id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~-~~g~~~si~~al~~l~---~~~d~vl  142 (211)
                      +....|..+++.+.+...   ..+|+|+.+  .+...++++.++..++..... ..|...++..+++.+.   .+.|+++
T Consensus         7 ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~   86 (183)
T cd06438           7 NEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAVV   86 (183)
T ss_pred             chHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEE
Confidence            445678888888876432   125666654  355666777777666543322 2233445666776652   2478999


Q ss_pred             EEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          143 NIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       143 v~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      ++++|. .+.++.+..++..+.++.+.+.+
T Consensus        87 ~~DaD~-~~~p~~l~~l~~~~~~~~~~v~g  115 (183)
T cd06438          87 VFDADN-LVDPNALEELNARFAAGARVVQA  115 (183)
T ss_pred             EEcCCC-CCChhHHHHHHHHHhhCCCeeEE
Confidence            999999 67899999999999766665544

The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.

>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional

Probab=96.84  E-value=0.035  Score=48.58  Aligned_cols=111  Identities=20%  Similarity=0.213  Sum_probs=70.2

Q ss_pred             CCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcC---CCCCeEEEEcC--cHHHHHHHHHcCCeEeeCC---
Q 028260           46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLA---TTLDHLVVATD--DEKIAECCQQFGADVIMTS---  117 (211)
Q Consensus        46 ~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~---~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~---  117 (211)
                      ..+++.+|||+-..              ...|..+++.+.+.   ....+|+|+-|  .+...+++++++.+++...   
T Consensus        29 ~~~~vSVVIPayNe--------------e~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~   94 (306)
T PRK13915         29 AGRTVSVVLPALNE--------------EETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSREEIL   94 (306)
T ss_pred             CCCCEEEEEecCCc--------------HHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhh
Confidence            45679999999533              34455556655532   23457877764  3555566666665542211   


Q ss_pred             ---cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC--CCeEEE
Q 028260          118 ---ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA--PDAVFS  172 (211)
Q Consensus       118 ---~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~d~vv~  172 (211)
                         ..-.|...++..|+...  +.|+++++++|.-..+++.+..+++.+..+  .+.+.+
T Consensus        95 ~~~~~n~Gkg~A~~~g~~~a--~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g  152 (306)
T PRK13915         95 PELPPRPGKGEALWRSLAAT--TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKA  152 (306)
T ss_pred             hccccCCCHHHHHHHHHHhc--CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEE
Confidence               11234445677787765  579999999998557899999999988533  344444

>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming)

Probab=96.78  E-value=0.041  Score=53.60  Aligned_cols=92  Identities=16%  Similarity=0.294  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHcCCCC-C--eEEEEcCc--------------------HHHHHHHHHcCCeEeeCCcccCCChHHHHHHHH
Q 028260           76 MIQRTWERSKLATTL-D--HLVVATDD--------------------EKIAECCQQFGADVIMTSESCRNGTERCNEALQ  132 (211)
Q Consensus        76 Ll~~~i~~l~~~~~i-d--~IVVvt~~--------------------e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~  132 (211)
                      +++.+++.+.+...- +  +|+|+-|.                    ++++++++++++.++.+++...+....+..|++
T Consensus       146 iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~~n~~~KAgnLN~al~  225 (713)
T TIGR03030       146 IVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRPRNVHAKAGNINNALK  225 (713)
T ss_pred             HHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECCCCCCCChHHHHHHHH
Confidence            667788887754332 2  56666542                    355667777888877665443334556788888


Q ss_pred             hhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeE
Q 028260          133 KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV  170 (211)
Q Consensus       133 ~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~v  170 (211)
                      +.  +.|+++++|+|+ ..+++.+++++..+.++++..
T Consensus       226 ~a--~gd~Il~lDAD~-v~~pd~L~~~v~~f~~dp~v~  260 (713)
T TIGR03030       226 HT--DGELILIFDADH-VPTRDFLQRTVGWFVEDPKLF  260 (713)
T ss_pred             hc--CCCEEEEECCCC-CcChhHHHHHHHHHHhCCCEE
Confidence            87  479999999999 678999999999986655543

Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=96.75  E-value=0.041  Score=40.35  Aligned_cols=94  Identities=18%  Similarity=0.301  Sum_probs=57.3

Q ss_pred             CeehHHHHHHHHHcCC-CCCeEEEEcC--cHHHHHHHHHcC---C-eEeeCCcccCCChHHHHHHHHhhccCCCEEEEEc
Q 028260           73 GKPMIQRTWERSKLAT-TLDHLVVATD--DEKIAECCQQFG---A-DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ  145 (211)
Q Consensus        73 GkpLl~~~i~~l~~~~-~id~IVVvt~--~e~i~~~~~~~~---v-~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~  145 (211)
                      ..++++++++.+.+.. ...+++|+.+  .++..+...+..   . ..........|...++..+++..  +.|++++++
T Consensus         8 ~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~v~~~d   85 (156)
T cd00761           8 EEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAA--RGEYILFLD   85 (156)
T ss_pred             cHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHh--cCCEEEEEC
Confidence            3689999999999864 2457777765  233344333321   1 12222222234445667788876  479999999


Q ss_pred             CCCcCCCHHHHHHHHHHHHhCCCe
Q 028260          146 GDEPLIEPEIIDGVVKALQAAPDA  169 (211)
Q Consensus       146 ~D~Pli~~~~i~~li~~~~~~~d~  169 (211)
                      +|.. +.++.+..++..+..+.+.
T Consensus        86 ~D~~-~~~~~~~~~~~~~~~~~~~  108 (156)
T cd00761          86 ADDL-LLPDWLERLVAELLADPEA  108 (156)
T ss_pred             CCCc-cCccHHHHHHHHHhcCCCc
Confidence            9995 5677787775555433333

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111

Probab=96.75  E-value=0.07  Score=48.90  Aligned_cols=105  Identities=15%  Similarity=0.224  Sum_probs=67.5

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCC-C--eEEEEcC--cHHHHHH----HHHc-CCeEeeCC
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL-D--HLVVATD--DEKIAEC----CQQF-GADVIMTS  117 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~i-d--~IVVvt~--~e~i~~~----~~~~-~v~vi~~~  117 (211)
                      +++.+|||+-              ++...+..+++.+.+...- +  +|+|+-|  .++..++    .+++ .+.+...+
T Consensus        49 P~vsVIIP~y--------------Ne~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~  114 (439)
T TIGR03111        49 PDITIIIPVY--------------NSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMN  114 (439)
T ss_pred             CCEEEEEEeC--------------CChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeC
Confidence            4577888773              4456778888888764322 1  4666543  2333332    2332 23443333


Q ss_pred             cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeE
Q 028260          118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV  170 (211)
Q Consensus       118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~v  170 (211)
                      + ..|...++..|++..  +.|+++++++|. .++++.+.++++.+.++++..
T Consensus       115 ~-~~Gka~AlN~gl~~s--~g~~v~~~DaD~-~~~~d~L~~l~~~f~~~~~v~  163 (439)
T TIGR03111       115 S-DQGKAKALNAAIYNS--IGKYIIHIDSDG-KLHKDAIKNMVTRFENNPDIH  163 (439)
T ss_pred             C-CCCHHHHHHHHHHHc--cCCEEEEECCCC-CcChHHHHHHHHHHHhCCCeE
Confidence            2 235456778888876  578999999999 679999999999997665543

Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=96.71  E-value=0.0089  Score=45.17  Aligned_cols=97  Identities=19%  Similarity=0.294  Sum_probs=62.0

Q ss_pred             CCeehHHHHHHHHHcC-CCCCeEEEEcCc--HHHHHHHHHc-----CCeEeeCCcccCCChHHHHHHHHhhccCCCEEEE
Q 028260           72 LGKPMIQRTWERSKLA-TTLDHLVVATDD--EKIAECCQQF-----GADVIMTSESCRNGTERCNEALQKLEKKYDIVVN  143 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~-~~id~IVVvt~~--e~i~~~~~~~-----~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv  143 (211)
                      ++...|..+++.+.+. ....+|+|+-+.  ++..++++++     .+.++..++.. |....+..|++.+  ..+++++
T Consensus         8 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~~~n~~~~~a--~~~~i~~   84 (169)
T PF00535_consen    8 NEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENL-GFSAARNRGIKHA--KGEYILF   84 (169)
T ss_dssp             S-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCS-HHHHHHHHHHHH----SSEEEE
T ss_pred             CCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccc-ccccccccccccc--ceeEEEE
Confidence            4456788888877764 234467776652  3455555543     34555544332 4446677888887  4679999


Q ss_pred             EcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          144 IQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      ++.|. .+.+..+..+++.+.++...++.
T Consensus        85 ld~D~-~~~~~~l~~l~~~~~~~~~~~~~  112 (169)
T PF00535_consen   85 LDDDD-IISPDWLEELVEALEKNPPDVVI  112 (169)
T ss_dssp             EETTE-EE-TTHHHHHHHHHHHCTTEEEE
T ss_pred             eCCCc-eEcHHHHHHHHHHHHhCCCcEEE
Confidence            99999 67777999999999874443333

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB

Probab=96.66  E-value=0.098  Score=47.02  Aligned_cols=111  Identities=14%  Similarity=0.142  Sum_probs=67.0

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCC--CeEEEEcC--cHHHHHH----HHHc----CCeEe
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL--DHLVVATD--DEKIAEC----CQQF----GADVI  114 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~i--d~IVVvt~--~e~i~~~----~~~~----~v~vi  114 (211)
                      .+++.+|||+.+              +...|..+++.+.+...-  -+|+|+-|  .|...++    .+++    .+.++
T Consensus        39 ~p~VSVIIpa~N--------------e~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi  104 (384)
T TIGR03469        39 WPAVVAVVPARN--------------EADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVV  104 (384)
T ss_pred             CCCEEEEEecCC--------------cHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEe
Confidence            456888888853              346677788888754321  26777664  2332333    3332    23443


Q ss_pred             eCCcc---cCCChHHHHHHHHhhc---cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          115 MTSES---CRNGTERCNEALQKLE---KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       115 ~~~~~---~~g~~~si~~al~~l~---~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      ..++.   ..|...++..|++...   .+.|+++++++|. .++++.++++++.+++....+++
T Consensus       105 ~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~-~~~p~~l~~lv~~~~~~~~~~vs  167 (384)
T TIGR03469       105 SGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADI-AHGPDNLARLVARARAEGLDLVS  167 (384)
T ss_pred             cCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCC-CCChhHHHHHHHHHHhCCCCEEE
Confidence            32211   1233446777777763   1279999999999 67999999999988654333444

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase

Probab=96.65  E-value=0.092  Score=43.65  Aligned_cols=113  Identities=13%  Similarity=0.121  Sum_probs=64.5

Q ss_pred             cCCCCCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHc----CCCCCeEEEEcC--cHHHHH----HHHHcC-
Q 028260           42 RSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKL----ATTLDHLVVATD--DEKIAE----CCQQFG-  110 (211)
Q Consensus        42 ~~~~~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~----~~~id~IVVvt~--~e~i~~----~~~~~~-  110 (211)
                      ++...++++.+|||+-....              .|..+++.+.+    ...+ +|+|+-|  .+...+    +.++++ 
T Consensus         3 ~~~~~~~~vsVvIp~yne~~--------------~l~~~l~~l~~~~~~~~~~-eiivvDdgS~D~t~~i~~~~~~~~~~   67 (243)
T PLN02726          3 APGEGAMKYSIIVPTYNERL--------------NIALIVYLIFKALQDVKDF-EIIVVDDGSPDGTQDVVKQLQKVYGE   67 (243)
T ss_pred             CCCCCCceEEEEEccCCchh--------------hHHHHHHHHHHHhccCCCe-EEEEEeCCCCCCHHHHHHHHHHhcCC
Confidence            34555678999999854433              23333333321    1112 6666653  222233    333333 


Q ss_pred             CeEeeC-CcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEE
Q 028260          111 ADVIMT-SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFS  172 (211)
Q Consensus       111 v~vi~~-~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~  172 (211)
                      ..+... ...-.|...++..|++..  +.|+++++++|.. .+++.+..+++.+.+ ..+.+++
T Consensus        68 ~~v~~~~~~~n~G~~~a~n~g~~~a--~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~g  128 (243)
T PLN02726         68 DRILLRPRPGKLGLGTAYIHGLKHA--SGDFVVIMDADLS-HHPKYLPSFIKKQRETGADIVTG  128 (243)
T ss_pred             CcEEEEecCCCCCHHHHHHHHHHHc--CCCEEEEEcCCCC-CCHHHHHHHHHHHHhcCCcEEEE
Confidence            223221 112234445677788876  5789999999995 799999999998854 4555544

>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional

Probab=96.58  E-value=0.042  Score=54.53  Aligned_cols=92  Identities=15%  Similarity=0.125  Sum_probs=66.1

Q ss_pred             hHHHHHHHHHcCCCC-C--eEEEEcC--cHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcC
Q 028260           76 MIQRTWERSKLATTL-D--HLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPL  150 (211)
Q Consensus        76 Ll~~~i~~l~~~~~i-d--~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pl  150 (211)
                      +++.+++.+.+...- +  +|+|+-|  .++..+++++.++.++.+++...+....+..|++..  +.|+++++|||. .
T Consensus       275 vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~~v~yI~R~~n~~gKAGnLN~aL~~a--~GEyIavlDAD~-i  351 (852)
T PRK11498        275 VVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEVGVKYIARPTHEHAKAGNINNALKYA--KGEFVAIFDCDH-V  351 (852)
T ss_pred             HHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHCCcEEEEeCCCCcchHHHHHHHHHhC--CCCEEEEECCCC-C
Confidence            567777776643322 1  5777654  577888888888887766543323345677888887  579999999999 6


Q ss_pred             CCHHHHHHHHHHHHhCCCeE
Q 028260          151 IEPEIIDGVVKALQAAPDAV  170 (211)
Q Consensus       151 i~~~~i~~li~~~~~~~d~v  170 (211)
                      .+++.++.++..+.++++..
T Consensus       352 p~pdfL~~~V~~f~~dP~Vg  371 (852)
T PRK11498        352 PTRSFLQMTMGWFLKDKKLA  371 (852)
T ss_pred             CChHHHHHHHHHHHhCCCeE
Confidence            89999999998876665543

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=96.53  E-value=0.073  Score=42.27  Aligned_cols=95  Identities=18%  Similarity=0.296  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHcCCC-CCeEEEEcC---cHHHHH----HHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCC
Q 028260           76 MIQRTWERSKLATT-LDHLVVATD---DEKIAE----CCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGD  147 (211)
Q Consensus        76 Ll~~~i~~l~~~~~-id~IVVvt~---~e~i~~----~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D  147 (211)
                      .|+.+++.+.+... -.+++|+.|   .+...+    +.+++++.++..++. .|...+...|+...  +.|+++++++|
T Consensus        14 ~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n-~G~~~a~N~g~~~a--~gd~i~~lD~D   90 (201)
T cd04195          14 FLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKN-RGLGKALNEGLKHC--TYDWVARMDTD   90 (201)
T ss_pred             HHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCcc-ccHHHHHHHHHHhc--CCCEEEEeCCc
Confidence            78888888886532 246666543   233333    333445555544322 35456677788876  57999999999


Q ss_pred             CcCCCHHHHHHHHHHHHhCCCeEEEEe
Q 028260          148 EPLIEPEIIDGVVKALQAAPDAVFSTA  174 (211)
Q Consensus       148 ~Pli~~~~i~~li~~~~~~~d~vv~v~  174 (211)
                      . .+.++.++.+++.+.++++..+...
T Consensus        91 d-~~~~~~l~~~~~~~~~~~~~~~~~~  116 (201)
T cd04195          91 D-ISLPDRFEKQLDFIEKNPEIDIVGG  116 (201)
T ss_pred             c-ccCcHHHHHHHHHHHhCCCeEEEcc
Confidence            9 7889999999999876655544433

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=96.46  E-value=0.14  Score=42.38  Aligned_cols=96  Identities=14%  Similarity=0.162  Sum_probs=59.1

Q ss_pred             CCeehHHHHHHHHHcCCCC---CeEEEEcC--cHHHHHHHHHcC----CeEeeCCc-ccCCChHHHHHHHHhhccCCCEE
Q 028260           72 LGKPMIQRTWERSKLATTL---DHLVVATD--DEKIAECCQQFG----ADVIMTSE-SCRNGTERCNEALQKLEKKYDIV  141 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~i---d~IVVvt~--~e~i~~~~~~~~----v~vi~~~~-~~~g~~~si~~al~~l~~~~d~v  141 (211)
                      +..-.|..+++.+.+...-   -+|+|+.+  .+...++++++.    .++...+. ...|...++..|++..  +.|++
T Consensus        11 Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a--~gd~i   88 (241)
T cd06427          11 KEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFA--RGEYV   88 (241)
T ss_pred             CcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhc--CCCEE
Confidence            3344567777777654221   14555543  344444554432    23433221 2234456777888876  57999


Q ss_pred             EEEcCCCcCCCHHHHHHHHHHHHhC-CCeE
Q 028260          142 VNIQGDEPLIEPEIIDGVVKALQAA-PDAV  170 (211)
Q Consensus       142 lv~~~D~Pli~~~~i~~li~~~~~~-~d~v  170 (211)
                      +++++|. .+.++.+.++++.+.++ .+..
T Consensus        89 ~~~DaD~-~~~~~~l~~~~~~~~~~~~~v~  117 (241)
T cd06427          89 VIYDAED-APDPDQLKKAVAAFARLDDKLA  117 (241)
T ss_pred             EEEcCCC-CCChHHHHHHHHHHHhcCCCEE
Confidence            9999999 79999999999998654 4443

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2

Probab=96.32  E-value=0.0092  Score=54.64  Aligned_cols=61  Identities=18%  Similarity=0.227  Sum_probs=46.1

Q ss_pred             CcEEEEEecCCCCCCCC---Ccccccc-CCeehHHHHHHHHHc----CC-CCCeEEEEcC---cHHHHHHHHHc
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKL----AT-TLDHLVVATD---DEKIAECCQQF  109 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l-~GkpLl~~~i~~l~~----~~-~id~IVVvt~---~e~i~~~~~~~  109 (211)
                      -++++|+||||.|+|||   +|.+.++ .|+++++..++++..    .+ .+ .+++-++   +++..+++++|
T Consensus        55 ~kvavl~LaGGlGTrlG~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~i-Pl~iMtS~~T~~~T~~~l~ky  127 (420)
T PF01704_consen   55 GKVAVLKLAGGLGTRLGCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDI-PLYIMTSFNTHEDTRKFLEKY  127 (420)
T ss_dssp             TCEEEEEEEESBSGCCTESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT--EEEEEEETTTHHHHHHHHHHG
T ss_pred             CCEEEEEEcCcccCccCCCCCCcceecCCcccHHHHHHHHHHHHhccccccc-eEEEecCcccHHHHHHHHHHh
Confidence            47889999999999997   6999999 689999999988874    11 23 4555553   56777777654

7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan

Probab=96.28  E-value=0.11  Score=42.20  Aligned_cols=87  Identities=18%  Similarity=0.240  Sum_probs=57.6

Q ss_pred             CCe-ehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHH---HHcC-CeEeeCCcccCCChHHHHHHHHhhccCCCEEEEE
Q 028260           72 LGK-PMIQRTWERSKLATTLDHLVVATD--DEKIAECC---QQFG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNI  144 (211)
Q Consensus        72 ~Gk-pLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~---~~~~-v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~  144 (211)
                      +.. ..+..+++.+.+.. -.+|+|+.+  .++..+.+   .... +.++.  ....|...++..|++..  +.|+++++
T Consensus        10 ne~~~~l~~~l~sl~~q~-~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~--~~~~g~~~a~n~g~~~a--~~d~v~~l   84 (235)
T cd06434          10 DEDPDVFRECLRSILRQK-PLEIIVVTDGDDEPYLSILSQTVKYGGIFVIT--VPHPGKRRALAEGIRHV--TTDIVVLL   84 (235)
T ss_pred             CCChHHHHHHHHHHHhCC-CCEEEEEeCCCChHHHHHHHhhccCCcEEEEe--cCCCChHHHHHHHHHHh--CCCEEEEE
Confidence            344 78888888888654 446766664  23333332   2222 22222  22335456677788876  58999999


Q ss_pred             cCCCcCCCHHHHHHHHHHHH
Q 028260          145 QGDEPLIEPEIIDGVVKALQ  164 (211)
Q Consensus       145 ~~D~Pli~~~~i~~li~~~~  164 (211)
                      ++|. .+.++.++++++.+.
T Consensus        85 D~D~-~~~~~~l~~l~~~~~  103 (235)
T cd06434          85 DSDT-VWPPNALPEMLKPFE  103 (235)
T ss_pred             CCCc-eeChhHHHHHHHhcc
Confidence            9999 788999999999986

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=96.23  E-value=0.24  Score=39.22  Aligned_cols=93  Identities=22%  Similarity=0.284  Sum_probs=57.7

Q ss_pred             CCe-ehHHHHHHHHHcCCCC-CeEEEEcC---cHHHHHHHHHc-----CCeEeeCCcccCCChHHHHHHHHhhccCCCEE
Q 028260           72 LGK-PMIQRTWERSKLATTL-DHLVVATD---DEKIAECCQQF-----GADVIMTSESCRNGTERCNEALQKLEKKYDIV  141 (211)
Q Consensus        72 ~Gk-pLl~~~i~~l~~~~~i-d~IVVvt~---~e~i~~~~~~~-----~v~vi~~~~~~~g~~~si~~al~~l~~~~d~v  141 (211)
                      ++. ..++.+++.+.+...- .+|+|+-+   ++....+.+.+     .+.++..+ ...|...++..|++..  ..|++
T Consensus        11 n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~g~~~a--~~d~i   87 (202)
T cd04184          11 NTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFRE-ENGGISAATNSALELA--TGEFV   87 (202)
T ss_pred             cCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcc-cCCCHHHHHHHHHHhh--cCCEE
Confidence            445 6778888888754322 25666643   22333333321     23333332 2234446677788876  47999


Q ss_pred             EEEcCCCcCCCHHHHHHHHHHHHhCCC
Q 028260          142 VNIQGDEPLIEPEIIDGVVKALQAAPD  168 (211)
Q Consensus       142 lv~~~D~Pli~~~~i~~li~~~~~~~d  168 (211)
                      +++++|. .++++.++.+++.+..+++
T Consensus        88 ~~ld~D~-~~~~~~l~~~~~~~~~~~~  113 (202)
T cd04184          88 ALLDHDD-ELAPHALYEVVKALNEHPD  113 (202)
T ss_pred             EEECCCC-cCChHHHHHHHHHHHhCCC
Confidence            9999999 7799999999999844333

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=96.07  E-value=0.16  Score=38.02  Aligned_cols=97  Identities=21%  Similarity=0.274  Sum_probs=59.7

Q ss_pred             CCeehHHHHHHHHHcCCC-CCeEEEEcC--cHHHHHHHHHcC----C-eEeeCCcccCCChHHHHHHHHhhccCCCEEEE
Q 028260           72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQFG----A-DVIMTSESCRNGTERCNEALQKLEKKYDIVVN  143 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~-id~IVVvt~--~e~i~~~~~~~~----v-~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv  143 (211)
                      +....|..+++.+.+... ..+++|+-+  .+...+.+.++.    . ..+.......|...+...|++..  ..+++++
T Consensus         7 n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~--~~~~i~~   84 (180)
T cd06423           7 NEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHA--KGDIVVV   84 (180)
T ss_pred             ChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhc--CCCEEEE
Confidence            445678888888876531 336666654  222333333322    1 12222223345556677888877  5899999


Q ss_pred             EcCCCcCCCHHHHHHHHHHHHhCCCeEE
Q 028260          144 IQGDEPLIEPEIIDGVVKALQAAPDAVF  171 (211)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~~~~~d~vv  171 (211)
                      +++|. .+.++.+..++..+.++++..+
T Consensus        85 ~D~D~-~~~~~~l~~~~~~~~~~~~~~~  111 (180)
T cd06423          85 LDADT-ILEPDALKRLVVPFFADPKVGA  111 (180)
T ss_pred             ECCCC-CcChHHHHHHHHHhccCCCeee
Confidence            99999 7789999999777655444433

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]

Probab=96.00  E-value=0.2  Score=43.02  Aligned_cols=73  Identities=15%  Similarity=0.265  Sum_probs=48.1

Q ss_pred             HHHHHHHHcCCe-EeeCCcc--cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHH---HHHhCCCeEEEEe
Q 028260          101 KIAECCQQFGAD-VIMTSES--CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK---ALQAAPDAVFSTA  174 (211)
Q Consensus       101 ~i~~~~~~~~v~-vi~~~~~--~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~---~~~~~~d~vv~v~  174 (211)
                      .+.++++..+.. ++..+..  .-+.....-.|++..  +.|+++++++|+ +++++.+..+++   .+.++++..+..+
T Consensus        51 ~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A--~~d~l~flD~D~-i~~~~~i~~~~~~~~~l~~~~~~~~~~p  127 (281)
T PF10111_consen   51 ELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYA--RGDYLIFLDADC-IPSPDFIEKLLNHVKKLDKNPNAFLVYP  127 (281)
T ss_pred             HHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHc--CCCEEEEEcCCe-eeCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence            455666666655 3333211  123344455677766  589999999999 889999999999   5655666666655


Q ss_pred             ee
Q 028260          175 VT  176 (211)
Q Consensus       175 ~~  176 (211)
                      +.
T Consensus       128 ~~  129 (281)
T PF10111_consen  128 CL  129 (281)
T ss_pred             ee
Confidence            43

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI

Probab=95.94  E-value=0.35  Score=43.19  Aligned_cols=100  Identities=15%  Similarity=0.194  Sum_probs=61.1

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCC-CeEEEEcC--cH----HHHHHHHHcC---CeEeeCC
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL-DHLVVATD--DE----KIAECCQQFG---ADVIMTS  117 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~i-d~IVVvt~--~e----~i~~~~~~~~---v~vi~~~  117 (211)
                      +++++|||+.+.              .+.|...++.+.+...- .+|+|+.+  ++    .++++.+++.   +.++..+
T Consensus        41 p~VSViiP~~ne--------------e~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~  106 (373)
T TIGR03472        41 PPVSVLKPLHGD--------------EPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDA  106 (373)
T ss_pred             CCeEEEEECCCC--------------ChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECC
Confidence            458888888644              35566777777654321 36766543  12    2233333332   3334433


Q ss_pred             cccCCC---hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028260          118 ESCRNG---TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (211)
Q Consensus       118 ~~~~g~---~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (211)
                      ++ .|.   ...+.++++..  +.|+++++|+|. .++++.++.++..+++
T Consensus       107 ~~-~G~~~K~~~l~~~~~~a--~ge~i~~~DaD~-~~~p~~L~~lv~~~~~  153 (373)
T TIGR03472       107 RR-HGPNRKVSNLINMLPHA--RHDILVIADSDI-SVGPDYLRQVVAPLAD  153 (373)
T ss_pred             CC-CCCChHHHHHHHHHHhc--cCCEEEEECCCC-CcChhHHHHHHHHhcC
Confidence            22 232   23455566655  589999999999 6799999999988853

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=95.93  E-value=0.18  Score=40.63  Aligned_cols=97  Identities=21%  Similarity=0.250  Sum_probs=60.5

Q ss_pred             CCeehHHHHHHHHHcCCC--CCeEEEEcC--cHHHHHHH----HHcC-CeEeeCCcccCCChHHHHHHHHhhccCCCEEE
Q 028260           72 LGKPMIQRTWERSKLATT--LDHLVVATD--DEKIAECC----QQFG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVV  142 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~--id~IVVvt~--~e~i~~~~----~~~~-v~vi~~~~~~~g~~~si~~al~~l~~~~d~vl  142 (211)
                      ++...|..+++.+.+...  -.+|+|+-|  .+...+++    +... +.++... .-.|...+...|++..  ..|+++
T Consensus         7 n~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~-~n~G~~~a~n~g~~~a--~gd~i~   83 (224)
T cd06442           7 NERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRP-GKRGLGSAYIEGFKAA--RGDVIV   83 (224)
T ss_pred             chhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEecC-CCCChHHHHHHHHHHc--CCCEEE
Confidence            445667888888875421  236666654  23223333    3323 2333332 3334456677888887  469999


Q ss_pred             EEcCCCcCCCHHHHHHHHHHH-HhCCCeEEE
Q 028260          143 NIQGDEPLIEPEIIDGVVKAL-QAAPDAVFS  172 (211)
Q Consensus       143 v~~~D~Pli~~~~i~~li~~~-~~~~d~vv~  172 (211)
                      ++++|. ..+++.+..+++.+ .++.+.+++
T Consensus        84 ~lD~D~-~~~~~~l~~l~~~~~~~~~~~v~g  113 (224)
T cd06442          84 VMDADL-SHPPEYIPELLEAQLEGGADLVIG  113 (224)
T ss_pred             EEECCC-CCCHHHHHHHHHHHhcCCCCEEEE
Confidence            999998 56899999999985 445565554

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function

Probab=95.92  E-value=0.037  Score=42.04  Aligned_cols=89  Identities=25%  Similarity=0.281  Sum_probs=45.4

Q ss_pred             HHHHHHcCCCCCeEEEEcCcH---HHHHHHHHcCCeEeeCCcccCCC-hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHH
Q 028260           80 TWERSKLATTLDHLVVATDDE---KIAECCQQFGADVIMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEI  155 (211)
Q Consensus        80 ~i~~l~~~~~id~IVVvt~~e---~i~~~~~~~~v~vi~~~~~~~g~-~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~  155 (211)
                      |++++.+....+.++..++..   .........++.+....   .+. .+++.++++.+....+.++++-.|.|.++++.
T Consensus         1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~---g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~   77 (122)
T PF09837_consen    1 TLAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQ---GGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDD   77 (122)
T ss_dssp             -------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE-----SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHH
T ss_pred             CccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecC---CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHH
Confidence            456666665454444444322   22211223355555432   123 37888888887545789999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEE
Q 028260          156 IDGVVKALQAAPDAVFS  172 (211)
Q Consensus       156 i~~li~~~~~~~d~vv~  172 (211)
                      |+.+.+++..+ |.+++
T Consensus        78 l~~A~~~L~~~-d~Vlg   93 (122)
T PF09837_consen   78 LEQAFEALQRH-DVVLG   93 (122)
T ss_dssp             HHHHHHHTTT--SEEEE
T ss_pred             HHHHHHHhccC-CEEEe
Confidence            99999998654 66655

; PDB: 3CGX_A.

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=95.91  E-value=0.16  Score=38.45  Aligned_cols=94  Identities=15%  Similarity=0.156  Sum_probs=62.0

Q ss_pred             CCeehHHHHHHHHHcCCC-CCeEEEEcC--cHHHHHHHHHcC--CeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcC
Q 028260           72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQFG--ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG  146 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~-id~IVVvt~--~e~i~~~~~~~~--v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~  146 (211)
                      +....+.++++.+.+... ..+++|+.+  .+...+.+.+..  +.++..+ ...|...+...+++.+  +.++++++++
T Consensus         7 ~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~~~~~~--~~~~i~~~D~   83 (166)
T cd04186           7 NSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFPEVRLIRNG-ENLGFGAGNNQGIREA--KGDYVLLLNP   83 (166)
T ss_pred             CCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCCCeEEEecC-CCcChHHHhhHHHhhC--CCCEEEEECC
Confidence            456788999999986532 346766664  233344444433  3443332 2335556677788887  5899999999


Q ss_pred             CCcCCCHHHHHHHHHHHHhCCCe
Q 028260          147 DEPLIEPEIIDGVVKALQAAPDA  169 (211)
Q Consensus       147 D~Pli~~~~i~~li~~~~~~~d~  169 (211)
                      |. .++++.+..+++.+.+.++.
T Consensus        84 D~-~~~~~~l~~~~~~~~~~~~~  105 (166)
T cd04186          84 DT-VVEPGALLELLDAAEQDPDV  105 (166)
T ss_pred             Cc-EECccHHHHHHHHHHhCCCc
Confidence            99 67899999999987655443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=95.87  E-value=0.24  Score=38.53  Aligned_cols=96  Identities=22%  Similarity=0.224  Sum_probs=59.7

Q ss_pred             eehHHHHHHHHHcCC---CCCeEEEEcC--cHHHHHHHH----HcC-CeEeeCCcccCCChHHHHHHHHhhccCCCEEEE
Q 028260           74 KPMIQRTWERSKLAT---TLDHLVVATD--DEKIAECCQ----QFG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVVN  143 (211)
Q Consensus        74 kpLl~~~i~~l~~~~---~id~IVVvt~--~e~i~~~~~----~~~-v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv  143 (211)
                      ...+..+++.+.+..   ...+|+|+-+  .+...+.++    +.. ..++..+ .-.|...+...+++..  ..|++++
T Consensus         9 ~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~-~n~G~~~a~n~g~~~a--~gd~i~~   85 (185)
T cd04179           9 EENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLS-RNFGKGAAVRAGFKAA--RGDIVVT   85 (185)
T ss_pred             HhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEcc-CCCCccHHHHHHHHHh--cCCEEEE
Confidence            355667777776552   2557777764  233333333    222 1223332 3345566777888877  4699999


Q ss_pred             EcCCCcCCCHHHHHHHHHHH-HhCCCeEEEE
Q 028260          144 IQGDEPLIEPEIIDGVVKAL-QAAPDAVFST  173 (211)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~-~~~~d~vv~v  173 (211)
                      +++|. .++++.++++++.+ ....+.+++.
T Consensus        86 lD~D~-~~~~~~l~~l~~~~~~~~~~~v~g~  115 (185)
T cd04179          86 MDADL-QHPPEDIPKLLEKLLEGGADVVIGS  115 (185)
T ss_pred             EeCCC-CCCHHHHHHHHHHHhccCCcEEEEE
Confidence            99999 56999999999985 4445555544

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=95.82  E-value=0.25  Score=40.33  Aligned_cols=88  Identities=19%  Similarity=0.317  Sum_probs=58.1

Q ss_pred             ehHHHHHHHHHcCCC-CCeEEEEcC---cH----HHHHHHHHcCCeE--eeCCcccCCC-hHHHHHHHHhhccCCCEEEE
Q 028260           75 PMIQRTWERSKLATT-LDHLVVATD---DE----KIAECCQQFGADV--IMTSESCRNG-TERCNEALQKLEKKYDIVVN  143 (211)
Q Consensus        75 pLl~~~i~~l~~~~~-id~IVVvt~---~e----~i~~~~~~~~v~v--i~~~~~~~g~-~~si~~al~~l~~~~d~vlv  143 (211)
                      .+|..+++.+.+... -.+|+|+-+   ++    .+++++++++.++  +... ...|. ..++..|++.+..+.|++++
T Consensus        12 ~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~-~~~G~~~~a~n~g~~~a~~~~d~i~~   90 (236)
T cd06435          12 EMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE-PLPGAKAGALNYALERTAPDAEIIAV   90 (236)
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC-CCCCCchHHHHHHHHhcCCCCCEEEE
Confidence            378898998886532 236766654   12    2334555544333  3332 22343 45677788876434799999


Q ss_pred             EcCCCcCCCHHHHHHHHHHHH
Q 028260          144 IQGDEPLIEPEIIDGVVKALQ  164 (211)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~~  164 (211)
                      +++|. .++++.+..+++.+.
T Consensus        91 lD~D~-~~~~~~l~~l~~~~~  110 (236)
T cd06435          91 IDADY-QVEPDWLKRLVPIFD  110 (236)
T ss_pred             EcCCC-CcCHHHHHHHHHHhc
Confidence            99998 899999999999885

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=95.68  E-value=0.47  Score=43.48  Aligned_cols=92  Identities=15%  Similarity=0.133  Sum_probs=58.0

Q ss_pred             eehHHHHHHHHHcCCC-CCeEEEEcC--cH----HHHHHHHHc-CCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEc
Q 028260           74 KPMIQRTWERSKLATT-LDHLVVATD--DE----KIAECCQQF-GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ  145 (211)
Q Consensus        74 kpLl~~~i~~l~~~~~-id~IVVvt~--~e----~i~~~~~~~-~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~  145 (211)
                      ...+..+++.+.+... -.+|+|+.|  ++    .+++..+++ .+.++... .-.|...++..|++..  +.|+++++|
T Consensus        87 ~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~-~n~Gka~AlN~gl~~a--~~d~iv~lD  163 (444)
T PRK14583         87 GLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLA-HNQGKAIALRMGAAAA--RSEYLVCID  163 (444)
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeC-CCCCHHHHHHHHHHhC--CCCEEEEEC
Confidence            3556777888765422 136777654  22    233333333 34444432 2234445677777765  589999999


Q ss_pred             CCCcCCCHHHHHHHHHHHHhCCCe
Q 028260          146 GDEPLIEPEIIDGVVKALQAAPDA  169 (211)
Q Consensus       146 ~D~Pli~~~~i~~li~~~~~~~d~  169 (211)
                      +|. ..+++.+..+++.+.++++.
T Consensus       164 AD~-~~~~d~L~~lv~~~~~~~~~  186 (444)
T PRK14583        164 GDA-LLDKNAVPYLVAPLIANPRT  186 (444)
T ss_pred             CCC-CcCHHHHHHHHHHHHhCCCe
Confidence            999 78999999999988655443

>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=95.60  E-value=0.013  Score=53.83  Aligned_cols=39  Identities=21%  Similarity=0.220  Sum_probs=34.9

Q ss_pred             CcEEEEEecCCCCCCCC---CccccccC-CeehHHHHHHHHHc
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKL   86 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l~-GkpLl~~~i~~l~~   86 (211)
                      .++++|++|||.|+|||   +|.+.++. |+++++...++++.
T Consensus       104 ~klAvl~LaGGqGtrlG~~gPKgl~~V~~gks~~dl~~~qIk~  146 (472)
T COG4284         104 GKLAVLKLAGGQGTRLGCDGPKGLFEVKDGKSLFDLQAEQIKY  146 (472)
T ss_pred             CceEEEEecCCcccccccCCCceeEEecCCCcHHHHHHHHHHH
Confidence            46889999999999997   69999997 99999999988874

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis

Probab=95.51  E-value=0.57  Score=37.38  Aligned_cols=86  Identities=14%  Similarity=0.239  Sum_probs=50.2

Q ss_pred             ehHHHHHHHHHcCCC-CCeEEEEcC--cHH----HHHHHHHcC-C--eEeeCCcccCCC---hHHHHHHHHhhccCCCEE
Q 028260           75 PMIQRTWERSKLATT-LDHLVVATD--DEK----IAECCQQFG-A--DVIMTSESCRNG---TERCNEALQKLEKKYDIV  141 (211)
Q Consensus        75 pLl~~~i~~l~~~~~-id~IVVvt~--~e~----i~~~~~~~~-v--~vi~~~~~~~g~---~~si~~al~~l~~~~d~v  141 (211)
                      ..|...|+.+.+... --+|+|+.+  .+.    ++++..++. .  .++..+.. .|.   ...+..|++..  +.|++
T Consensus        14 ~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~g~~~a--~~d~i   90 (196)
T cd02520          14 PNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEK-VGINPKVNNLIKGYEEA--RYDIL   90 (196)
T ss_pred             ccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCc-CCCCHhHHHHHHHHHhC--CCCEE
Confidence            446666777764321 136666654  222    233333332 2  23333222 132   22355677765  57999


Q ss_pred             EEEcCCCcCCCHHHHHHHHHHHH
Q 028260          142 VNIQGDEPLIEPEIIDGVVKALQ  164 (211)
Q Consensus       142 lv~~~D~Pli~~~~i~~li~~~~  164 (211)
                      +++++|. .++++.+..+++.+.
T Consensus        91 ~~~D~D~-~~~~~~l~~l~~~~~  112 (196)
T cd02520          91 VISDSDI-SVPPDYLRRMVAPLM  112 (196)
T ss_pred             EEECCCc-eEChhHHHHHHHHhh
Confidence            9999998 679999999999874

UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.

>PRK10073 putative glycosyl transferase; Provisional

Probab=95.51  E-value=0.46  Score=41.85  Aligned_cols=105  Identities=11%  Similarity=0.115  Sum_probs=65.6

Q ss_pred             cEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCC-CeEEEEcC--cHH----HHHHHHHc-CCeEeeCCccc
Q 028260           49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL-DHLVVATD--DEK----IAECCQQF-GADVIMTSESC  120 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~i-d~IVVvt~--~e~----i~~~~~~~-~v~vi~~~~~~  120 (211)
                      .+.+|||+              ++....|..+++.+.+...- -+|+|+-|  .+.    +++++++. .+.++..  .-
T Consensus         7 ~vSVIIP~--------------yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~~--~n   70 (328)
T PRK10073          7 KLSIIIPL--------------YNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLLHQ--AN   70 (328)
T ss_pred             eEEEEEec--------------cCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEC--CC
Confidence            46677776              34456788888888764321 25666653  222    23333332 2343332  22


Q ss_pred             CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEE
Q 028260          121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFS  172 (211)
Q Consensus       121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~  172 (211)
                      .|...+...|++..  ..|+++++++|. ++.++.++.+++.+.+ +.|.+++
T Consensus        71 ~G~~~arN~gl~~a--~g~yi~flD~DD-~~~p~~l~~l~~~~~~~~~dvv~~  120 (328)
T PRK10073         71 AGVSVARNTGLAVA--TGKYVAFPDADD-VVYPTMYETLMTMALEDDLDVAQC  120 (328)
T ss_pred             CChHHHHHHHHHhC--CCCEEEEECCCC-ccChhHHHHHHHHHHhCCCCEEEE
Confidence            34445667788877  579999999999 7889999999988754 4455544

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=95.47  E-value=0.26  Score=39.74  Aligned_cols=98  Identities=13%  Similarity=0.104  Sum_probs=59.7

Q ss_pred             CCeehHHHHHHHHHcCC-----CCCeEEEEcC--cHH----HHHHHHHcCC--eEeeCCcccCCChHHHHHHHHhhccCC
Q 028260           72 LGKPMIQRTWERSKLAT-----TLDHLVVATD--DEK----IAECCQQFGA--DVIMTSESCRNGTERCNEALQKLEKKY  138 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~-----~id~IVVvt~--~e~----i~~~~~~~~v--~vi~~~~~~~g~~~si~~al~~l~~~~  138 (211)
                      +....|..+++.+.+..     .-.+|+|+-|  .+.    ++++.++++.  .++..+ .-.|...++..|++..  ..
T Consensus         7 N~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~-~n~G~~~a~~~g~~~a--~g   83 (211)
T cd04188           7 NEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLP-KNRGKGGAVRAGMLAA--RG   83 (211)
T ss_pred             ChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcc-cCCCcHHHHHHHHHHh--cC
Confidence            44455666666665421     1236666653  222    3333334443  333332 2235556778888887  47


Q ss_pred             CEEEEEcCCCcCCCHHHHHHHHHHHH-hCCCeEEEE
Q 028260          139 DIVVNIQGDEPLIEPEIIDGVVKALQ-AAPDAVFST  173 (211)
Q Consensus       139 d~vlv~~~D~Pli~~~~i~~li~~~~-~~~d~vv~v  173 (211)
                      |+++++++|. ..+++.+..+++.+. ...+.+++.
T Consensus        84 d~i~~ld~D~-~~~~~~l~~l~~~~~~~~~~~v~g~  118 (211)
T cd04188          84 DYILFADADL-ATPFEELEKLEEALKTSGYDIAIGS  118 (211)
T ss_pred             CEEEEEeCCC-CCCHHHHHHHHHHHhccCCcEEEEE
Confidence            9999999999 689999999999854 445555543

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=95.44  E-value=0.24  Score=42.57  Aligned_cols=97  Identities=10%  Similarity=0.109  Sum_probs=61.7

Q ss_pred             CCe-ehHHHHHHHHHcCCC---CCeEEEEcC--cHHHHHHH-----HHc--CCeEeeCCcccCCChHHHHHHHHhhccCC
Q 028260           72 LGK-PMIQRTWERSKLATT---LDHLVVATD--DEKIAECC-----QQF--GADVIMTSESCRNGTERCNEALQKLEKKY  138 (211)
Q Consensus        72 ~Gk-pLl~~~i~~l~~~~~---id~IVVvt~--~e~i~~~~-----~~~--~v~vi~~~~~~~g~~~si~~al~~l~~~~  138 (211)
                      +.. ..|..+++.+.+...   ..+||||-|  .+...+..     ...  .++++..+. -.|-..+...|++..  ..
T Consensus         8 N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~-n~G~~~a~N~g~~~A--~g   84 (299)
T cd02510           8 NEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKK-REGLIRARIAGARAA--TG   84 (299)
T ss_pred             cCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCC-CCCHHHHHHHHHHHc--cC
Confidence            344 688888888875422   137777764  12222221     222  345554432 234445667788876  57


Q ss_pred             CEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          139 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       139 d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      |+++++++|. .++++.++.+++.+.+++..+++
T Consensus        85 d~i~fLD~D~-~~~~~wL~~ll~~l~~~~~~~v~  117 (299)
T cd02510          85 DVLVFLDSHC-EVNVGWLEPLLARIAENRKTVVC  117 (299)
T ss_pred             CEEEEEeCCc-ccCccHHHHHHHHHHhCCCeEEE
Confidence            9999999999 56999999999999776665544

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=95.42  E-value=0.55  Score=36.67  Aligned_cols=51  Identities=18%  Similarity=0.246  Sum_probs=39.4

Q ss_pred             CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEe
Q 028260          121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA  174 (211)
Q Consensus       121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~  174 (211)
                      .|...++..|++..  ..|+++++++|.. .+++.+..+++.+.++.+.+++..
T Consensus        66 ~G~~~a~n~g~~~a--~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~~~~v~g~~  116 (181)
T cd04187          66 FGQQAALLAGLDHA--RGDAVITMDADLQ-DPPELIPEMLAKWEEGYDVVYGVR  116 (181)
T ss_pred             CCcHHHHHHHHHhc--CCCEEEEEeCCCC-CCHHHHHHHHHHHhCCCcEEEEEe
Confidence            45566777888877  4699999999995 689999999998765566655543

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional

Probab=95.38  E-value=0.5  Score=41.78  Aligned_cols=41  Identities=5%  Similarity=0.072  Sum_probs=33.0

Q ss_pred             CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHH
Q 028260          121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ  164 (211)
Q Consensus       121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~  164 (211)
                      .|...++..|++..  ..|+++++++|. ..+++.+..+++.+.
T Consensus       148 ~G~~~A~~~Gi~~a--~gd~I~~~DaD~-~~~~~~l~~l~~~l~  188 (333)
T PTZ00260        148 KGKGGAVRIGMLAS--RGKYILMVDADG-ATDIDDFDKLEDIML  188 (333)
T ss_pred             CChHHHHHHHHHHc--cCCEEEEEeCCC-CCCHHHHHHHHHHHH
Confidence            35556777888876  579999999998 578889999988875

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=95.33  E-value=0.29  Score=38.23  Aligned_cols=89  Identities=12%  Similarity=0.161  Sum_probs=55.8

Q ss_pred             CCeehHHHHHHHHHcCCCCC--eEEEEcC--cHHHHHHHHHcCC--eEeeCCcccCCChHHHHHHHHhhccCCCEEEEEc
Q 028260           72 LGKPMIQRTWERSKLATTLD--HLVVATD--DEKIAECCQQFGA--DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ  145 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~id--~IVVvt~--~e~i~~~~~~~~v--~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~  145 (211)
                      ++...++.+++.+.+.. ..  +|+|+-+  .+...++++++..  ..+... ...|...++..|++..  +.|++++++
T Consensus         8 n~~~~l~~~l~sl~~q~-~~~~evivvDd~s~d~~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~~~~~a--~~~~v~~ld   83 (202)
T cd06433           8 NQAETLEETIDSVLSQT-YPNIEYIVIDGGSTDGTVDIIKKYEDKITYWISE-PDKGIYDAMNKGIALA--TGDIIGFLN   83 (202)
T ss_pred             chHHHHHHHHHHHHhCC-CCCceEEEEeCCCCccHHHHHHHhHhhcEEEEec-CCcCHHHHHHHHHHHc--CCCEEEEeC
Confidence            45677888888887542 33  5666643  3334444444332  223322 2234456677788876  579999999


Q ss_pred             CCCcCCCHHHHHHHHHHHHh
Q 028260          146 GDEPLIEPEIIDGVVKALQA  165 (211)
Q Consensus       146 ~D~Pli~~~~i~~li~~~~~  165 (211)
                      +|. .+.++.+..++..+..
T Consensus        84 ~D~-~~~~~~~~~~~~~~~~  102 (202)
T cd06433          84 SDD-TLLPGALLAVVAAFAE  102 (202)
T ss_pred             CCc-ccCchHHHHHHHHHHh
Confidence            999 6777888888755543

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

Probab=95.33  E-value=0.54  Score=38.41  Aligned_cols=89  Identities=13%  Similarity=0.162  Sum_probs=52.1

Q ss_pred             CCeehHHHHHHHHHcCCCCC---eEEEEcC-cHH----HHHHHHH---cCCeE--eeCCcccCCC-hHHHHHHHHhhccC
Q 028260           72 LGKPMIQRTWERSKLATTLD---HLVVATD-DEK----IAECCQQ---FGADV--IMTSESCRNG-TERCNEALQKLEKK  137 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~id---~IVVvt~-~e~----i~~~~~~---~~v~v--i~~~~~~~g~-~~si~~al~~l~~~  137 (211)
                      +....|..+|+.+.+.....   +|+|+-+ .+.    +++...+   .+.++  +...+ -.|. ..++..|++..  +
T Consensus        11 Ne~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~-~~G~k~~a~n~g~~~a--~   87 (232)
T cd06437          11 NEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRAD-RTGYKAGALAEGMKVA--K   87 (232)
T ss_pred             CcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCC-CCCCchHHHHHHHHhC--C
Confidence            44466788888887543221   4545433 222    2222222   13333  22222 2343 44567788876  5


Q ss_pred             CCEEEEEcCCCcCCCHHHHHHHHHHHH
Q 028260          138 YDIVVNIQGDEPLIEPEIIDGVVKALQ  164 (211)
Q Consensus       138 ~d~vlv~~~D~Pli~~~~i~~li~~~~  164 (211)
                      .|+++++++|. .+.++.++.+...+.
T Consensus        88 ~~~i~~~DaD~-~~~~~~l~~~~~~~~  113 (232)
T cd06437          88 GEYVAIFDADF-VPPPDFLQKTPPYFA  113 (232)
T ss_pred             CCEEEEEcCCC-CCChHHHHHhhhhhc
Confidence            89999999999 679999999666553

Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we

>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

Probab=95.30  E-value=0.61  Score=37.76  Aligned_cols=102  Identities=18%  Similarity=0.178  Sum_probs=61.8

Q ss_pred             cCCeehHHHHHHHHHcCCCC--CeEEEEcC--cH----HHHHHHHHc---CCeEeeCCc---ccCCChHHHHHHHHhhcc
Q 028260           71 ILGKPMIQRTWERSKLATTL--DHLVVATD--DE----KIAECCQQF---GADVIMTSE---SCRNGTERCNEALQKLEK  136 (211)
Q Consensus        71 l~GkpLl~~~i~~l~~~~~i--d~IVVvt~--~e----~i~~~~~~~---~v~vi~~~~---~~~g~~~si~~al~~l~~  136 (211)
                      +++...|+.+++.+.+...-  -+|+|+-+  .+    .+.++..++   ++.++....   ...|...+...|++..  
T Consensus         6 yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a--   83 (219)
T cd06913           6 HNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQS--   83 (219)
T ss_pred             cCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhc--
Confidence            35667888888888764322  26666654  12    233333322   233333221   1123334556677765  


Q ss_pred             CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEee
Q 028260          137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV  175 (211)
Q Consensus       137 ~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~  175 (211)
                      ..|+++++++|. +..++.+..++..+.++++.+++...
T Consensus        84 ~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~  121 (219)
T cd06913          84 SGRYLCFLDSDD-VMMPQRIRLQYEAALQHPNSIIGCQV  121 (219)
T ss_pred             CCCEEEEECCCc-cCChhHHHHHHHHHHhCCCcEEEEEE
Confidence            579999999998 67888899888887666666655443

This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=95.20  E-value=0.37  Score=39.23  Aligned_cols=89  Identities=17%  Similarity=0.230  Sum_probs=56.3

Q ss_pred             CeehHHHHHHHHHcCCC---CCeEEEEcC--cHHHHHHHHHcC-----CeEeeCCcccCCChHHHHHHHHhhccCCCEEE
Q 028260           73 GKPMIQRTWERSKLATT---LDHLVVATD--DEKIAECCQQFG-----ADVIMTSESCRNGTERCNEALQKLEKKYDIVV  142 (211)
Q Consensus        73 GkpLl~~~i~~l~~~~~---id~IVVvt~--~e~i~~~~~~~~-----v~vi~~~~~~~g~~~si~~al~~l~~~~d~vl  142 (211)
                      ....+..+++.+.+...   --+|+|+-+  .++..+.++.+.     +.++..+  ..+...++..|++..  +.|+++
T Consensus        11 ~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~--~~~~~~a~N~g~~~a--~~d~v~   86 (249)
T cd02525          11 EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNP--KRIQSAGLNIGIRNS--RGDIII   86 (249)
T ss_pred             chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCC--CCCchHHHHHHHHHh--CCCEEE
Confidence            34567778888875432   126666653  233334333322     3334332  224445677788876  589999


Q ss_pred             EEcCCCcCCCHHHHHHHHHHHHhC
Q 028260          143 NIQGDEPLIEPEIIDGVVKALQAA  166 (211)
Q Consensus       143 v~~~D~Pli~~~~i~~li~~~~~~  166 (211)
                      ++++|. .++++.+..+++.+.+.
T Consensus        87 ~lD~D~-~~~~~~l~~~~~~~~~~  109 (249)
T cd02525          87 RVDAHA-VYPKDYILELVEALKRT  109 (249)
T ss_pred             EECCCc-cCCHHHHHHHHHHHhcC
Confidence            999999 78999999999877543

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>PRK10018 putative glycosyl transferase; Provisional

Probab=94.92  E-value=0.93  Score=39.15  Aligned_cols=90  Identities=11%  Similarity=0.117  Sum_probs=56.4

Q ss_pred             CCeehHHHHHHHHHcCCCC-CeEEEEcC--c--HHHHHHHHHcC---CeEeeCCcccCCChHHHHHHHHhhccCCCEEEE
Q 028260           72 LGKPMIQRTWERSKLATTL-DHLVVATD--D--EKIAECCQQFG---ADVIMTSESCRNGTERCNEALQKLEKKYDIVVN  143 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~i-d~IVVvt~--~--e~i~~~~~~~~---v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv  143 (211)
                      +....+..+|+.+.+...- -+++|+-|  .  +.+.++++.+.   +.++..+ .-.|...+...|++..  ..+++++
T Consensus        15 N~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~-~n~G~~~a~N~gi~~a--~g~~I~~   91 (279)
T PRK10018         15 NRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHND-INSGACAVRNQAIMLA--QGEYITG   91 (279)
T ss_pred             CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECC-CCCCHHHHHHHHHHHc--CCCEEEE
Confidence            4455677888877654322 25666543  1  34555555432   3333332 2234445566788876  5899999


Q ss_pred             EcCCCcCCCHHHHHHHHHHHHh
Q 028260          144 IQGDEPLIEPEIIDGVVKALQA  165 (211)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~~~  165 (211)
                      +++|. ...++.+..+++.+.+
T Consensus        92 lDaDD-~~~p~~l~~~~~~~~~  112 (279)
T PRK10018         92 IDDDD-EWTPNRLSVFLAHKQQ  112 (279)
T ss_pred             ECCCC-CCCccHHHHHHHHHHh
Confidence            99999 6778889999887754

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=94.90  E-value=0.52  Score=42.29  Aligned_cols=105  Identities=24%  Similarity=0.361  Sum_probs=70.7

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCee-hHHHHHHHHHcCCCCC-eEEEEcC--cHHHHHHHHHcC------CeEeeCC
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGKP-MIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQFG------ADVIMTS  117 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~Gkp-Ll~~~i~~l~~~~~id-~IVVvt~--~e~i~~~~~~~~------v~vi~~~  117 (211)
                      +++..+||+-++              .+ .++.+++.+.+...-+ +|+|+.|  .|+..+++++.+      +.+...+
T Consensus        54 p~vsviiP~ynE--------------~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~  119 (439)
T COG1215          54 PKVSVIIPAYNE--------------EPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPE  119 (439)
T ss_pred             CceEEEEecCCC--------------chhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEecc
Confidence            567777777544              34 8999999998765332 7777775  455555554432      2222111


Q ss_pred             cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCe
Q 028260          118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA  169 (211)
Q Consensus       118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~  169 (211)
                      ....|....+..|++..  +.|.++++|+|. ...++.+.+++..+......
T Consensus       120 ~~~~gK~~al~~~l~~~--~~d~V~~~DaD~-~~~~d~l~~~~~~f~~~~~~  168 (439)
T COG1215         120 KKNGGKAGALNNGLKRA--KGDVVVILDADT-VPEPDALRELVSPFEDPPVG  168 (439)
T ss_pred             ccCccchHHHHHHHhhc--CCCEEEEEcCCC-CCChhHHHHHHhhhcCCCee
Confidence            12234456777888876  489999999999 78999999999999754433

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=94.86  E-value=0.72  Score=36.98  Aligned_cols=93  Identities=11%  Similarity=0.090  Sum_probs=55.3

Q ss_pred             CCeehHHHHHHHHHcCCCC---CeEEEEcC--cHHHHHHHH---H-cC--CeEeeCCccc-CCChHHHHHHHHhhccCCC
Q 028260           72 LGKPMIQRTWERSKLATTL---DHLVVATD--DEKIAECCQ---Q-FG--ADVIMTSESC-RNGTERCNEALQKLEKKYD  139 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~i---d~IVVvt~--~e~i~~~~~---~-~~--v~vi~~~~~~-~g~~~si~~al~~l~~~~d  139 (211)
                      +....|+.+|+.+.....-   -+|+|+-+  .+...++++   . .+  +.++..+... .|...++..|++..  ..|
T Consensus         7 n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~--~~d   84 (229)
T cd04192           7 NEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAA--KGD   84 (229)
T ss_pred             CcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHh--cCC
Confidence            4456788888888654322   25666654  222222221   1 12  2333322111 22234566677765  479


Q ss_pred             EEEEEcCCCcCCCHHHHHHHHHHHHhCC
Q 028260          140 IVVNIQGDEPLIEPEIIDGVVKALQAAP  167 (211)
Q Consensus       140 ~vlv~~~D~Pli~~~~i~~li~~~~~~~  167 (211)
                      +++++++|. .+.++.++.+++.+..+.
T Consensus        85 ~i~~~D~D~-~~~~~~l~~l~~~~~~~~  111 (229)
T cd04192          85 WIVTTDADC-VVPSNWLLTFVAFIQKEQ  111 (229)
T ss_pred             EEEEECCCc-ccCHHHHHHHHHHhhcCC
Confidence            999999999 789999999999875443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>COG1216 Predicted glycosyltransferases [General function prediction only]

Probab=94.70  E-value=0.84  Score=39.52  Aligned_cols=103  Identities=17%  Similarity=0.200  Sum_probs=64.0

Q ss_pred             cCCeehHHHHHHHHHcCCCCCeEEEEcC---cHHHHHHHHHc---CCeEeeCCcccCCChHHHHHHHHhhccC-CCEEEE
Q 028260           71 ILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQF---GADVIMTSESCRNGTERCNEALQKLEKK-YDIVVN  143 (211)
Q Consensus        71 l~GkpLl~~~i~~l~~~~~id~IVVvt~---~e~i~~~~~~~---~v~vi~~~~~~~g~~~si~~al~~l~~~-~d~vlv  143 (211)
                      ++...-+...++.+.+....+..+|+++   .+...+..+..   .+.++..++. .|...+...+++....+ .+++++
T Consensus        12 yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~N-lG~agg~n~g~~~a~~~~~~~~l~   90 (305)
T COG1216          12 YNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARFFPNVRLIENGEN-LGFAGGFNRGIKYALAKGDDYVLL   90 (305)
T ss_pred             cCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCC-ccchhhhhHHHHHHhcCCCcEEEE
Confidence            5666777777888877665555555443   23333333332   4555555443 24445555566655323 238999


Q ss_pred             EcCCCcCCCHHHHHHHHHHHHhCCCeEEEEee
Q 028260          144 IQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV  175 (211)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~  175 (211)
                      ++-|. .++++.+.++++.+++.++..+....
T Consensus        91 LN~D~-~~~~~~l~~ll~~~~~~~~~~~~~~~  121 (305)
T COG1216          91 LNPDT-VVEPDLLEELLKAAEEDPAAGVVGPL  121 (305)
T ss_pred             EcCCe-eeChhHHHHHHHHHHhCCCCeEeeee
Confidence            99996 78999999999999876555544443

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=94.54  E-value=0.91  Score=35.97  Aligned_cols=94  Identities=16%  Similarity=0.200  Sum_probs=57.0

Q ss_pred             CCeehHHHHHHHHHcCCCC-CeEEEEcC--cHH----HHHHHHHcCCeE-eeCCcccCCChHHHHHHHHhhccCCCEEEE
Q 028260           72 LGKPMIQRTWERSKLATTL-DHLVVATD--DEK----IAECCQQFGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVN  143 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~i-d~IVVvt~--~e~----i~~~~~~~~v~v-i~~~~~~~g~~~si~~al~~l~~~~d~vlv  143 (211)
                      +....|..+++.+.+...- -+|+|+-+  .+.    ++++..+++..+ +...+.-.|....+..|+...  +.|++++
T Consensus         8 n~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~--~g~~v~~   85 (214)
T cd04196           8 NGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAA--DGDYVFF   85 (214)
T ss_pred             CcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhC--CCCEEEE
Confidence            4456778888888754321 25666653  222    333333333222 232222234455666777765  5899999


Q ss_pred             EcCCCcCCCHHHHHHHHHHHHhCCC
Q 028260          144 IQGDEPLIEPEIIDGVVKALQAAPD  168 (211)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~~~~~d  168 (211)
                      ++.|. .+.++.+..+++.+.+.+.
T Consensus        86 ld~Dd-~~~~~~l~~~~~~~~~~~~  109 (214)
T cd04196          86 CDQDD-IWLPDKLERLLKAFLKDDK  109 (214)
T ss_pred             ECCCc-ccChhHHHHHHHHHhcCCC
Confidence            99998 6789999999998544333

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=94.40  E-value=0.9  Score=36.04  Aligned_cols=92  Identities=15%  Similarity=0.241  Sum_probs=58.3

Q ss_pred             cCCeehHHHHHHHHHcCCC-CCeEEEEcC--cHHHHHHHHHcCC----eEeeCCcccCCChHHHHHHHHhhc-cCCCEEE
Q 028260           71 ILGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQFGA----DVIMTSESCRNGTERCNEALQKLE-KKYDIVV  142 (211)
Q Consensus        71 l~GkpLl~~~i~~l~~~~~-id~IVVvt~--~e~i~~~~~~~~v----~vi~~~~~~~g~~~si~~al~~l~-~~~d~vl  142 (211)
                      +++...|..+++.+.+... -.+|+|+-+  .+...++++++..    .++..++ ..|...++..+++... .+.|+++
T Consensus         6 ~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~i~~~~~~~-n~g~~~~~n~~~~~a~~~~~d~v~   84 (202)
T cd04185           6 YNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDNIVYLRLPE-NLGGAGGFYEGVRRAYELGYDWIW   84 (202)
T ss_pred             eCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCceEEEECcc-ccchhhHHHHHHHHHhccCCCEEE
Confidence            3556778888998876432 236666653  3444555554432    3343332 2344444555555432 2578999


Q ss_pred             EEcCCCcCCCHHHHHHHHHHHH
Q 028260          143 NIQGDEPLIEPEIIDGVVKALQ  164 (211)
Q Consensus       143 v~~~D~Pli~~~~i~~li~~~~  164 (211)
                      ++++|. .+.++.++.+++.+.
T Consensus        85 ~ld~D~-~~~~~~l~~l~~~~~  105 (202)
T cd04185          85 LMDDDA-IPDPDALEKLLAYAD  105 (202)
T ss_pred             EeCCCC-CcChHHHHHHHHHHh
Confidence            999999 788999999999886

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK10063 putative glycosyl transferase; Provisional

Probab=94.37  E-value=1.2  Score=37.55  Aligned_cols=81  Identities=6%  Similarity=0.077  Sum_probs=46.1

Q ss_pred             CCeehHHHHHHHHHcC---CCC-CeEEEEcC--cHHHHHHHHHc----CCeEeeCCcccCCChHHHHHHHHhhccCCCEE
Q 028260           72 LGKPMIQRTWERSKLA---TTL-DHLVVATD--DEKIAECCQQF----GADVIMTSESCRNGTERCNEALQKLEKKYDIV  141 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~---~~i-d~IVVvt~--~e~i~~~~~~~----~v~vi~~~~~~~g~~~si~~al~~l~~~~d~v  141 (211)
                      +....|..+++.+.+.   ... -+++|+-+  .+...++++++    .+.++..  ...|...++..|++..  ..|++
T Consensus        11 N~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~~i~~i~~--~~~G~~~A~N~Gi~~a--~g~~v   86 (248)
T PRK10063         11 RNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIFNLRFVSE--PDNGIYDAMNKGIAMA--QGRFA   86 (248)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccCCEEEEEC--CCCCHHHHHHHHHHHc--CCCEE
Confidence            4455677777777521   111 25666543  34444555544    2344432  2235456777888876  57999


Q ss_pred             EEEcCCCcCCCHHHHH
Q 028260          142 VNIQGDEPLIEPEIID  157 (211)
Q Consensus       142 lv~~~D~Pli~~~~i~  157 (211)
                      +++++|. +..++.++
T Consensus        87 ~~ld~DD-~~~~~~~~  101 (248)
T PRK10063         87 LFLNSGD-IFHQDAAN  101 (248)
T ss_pred             EEEeCCc-ccCcCHHH
Confidence            9999877 44455444

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase

Probab=94.33  E-value=0.8  Score=37.19  Aligned_cols=87  Identities=11%  Similarity=0.132  Sum_probs=56.1

Q ss_pred             ccCCe-ehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHH--HcCCeEeeCCcccCCChHHHHHHHHhhcc-CCCEEEE
Q 028260           70 NILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQ--QFGADVIMTSESCRNGTERCNEALQKLEK-KYDIVVN  143 (211)
Q Consensus        70 ~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~--~~~v~vi~~~~~~~g~~~si~~al~~l~~-~~d~vlv  143 (211)
                      .+++. ..+..+++.+.+.  ..+|+|+-+.  +......+  ..++.++..+ .-.|...+...|++.... +.|++++
T Consensus         5 ~yn~~~~~l~~~l~sl~~q--~~~iivvDn~s~~~~~~~~~~~~~~i~~i~~~-~n~G~~~a~N~g~~~a~~~~~d~v~~   81 (237)
T cd02526           5 TYNPDLSKLKELLAALAEQ--VDKVVVVDNSSGNDIELRLRLNSEKIELIHLG-ENLGIAKALNIGIKAALENGADYVLL   81 (237)
T ss_pred             EecCCHHHHHHHHHHHhcc--CCEEEEEeCCCCccHHHHhhccCCcEEEEECC-CceehHHhhhHHHHHHHhCCCCEEEE
Confidence            34666 8899999998864  5577776542  22222222  2234444433 234545566777877642 4699999


Q ss_pred             EcCCCcCCCHHHHHHHH
Q 028260          144 IQGDEPLIEPEIIDGVV  160 (211)
Q Consensus       144 ~~~D~Pli~~~~i~~li  160 (211)
                      +++|. .++++.+..++
T Consensus        82 lD~D~-~~~~~~l~~l~   97 (237)
T cd02526          82 FDQDS-VPPPDMVEKLL   97 (237)
T ss_pred             ECCCC-CcCHhHHHHHH
Confidence            99999 67899999995

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=94.20  E-value=1  Score=38.13  Aligned_cols=89  Identities=10%  Similarity=0.051  Sum_probs=59.5

Q ss_pred             eehHHHHHHHHHcCCCCCeEEEEcCc----HHHHHHHHHc-CCeEeeCCcccCCChHHHHHHHHhhc-cCCCEEEEEcCC
Q 028260           74 KPMIQRTWERSKLATTLDHLVVATDD----EKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGD  147 (211)
Q Consensus        74 kpLl~~~i~~l~~~~~id~IVVvt~~----e~i~~~~~~~-~v~vi~~~~~~~g~~~si~~al~~l~-~~~d~vlv~~~D  147 (211)
                      ...|..+++.+.+.  ..+|+|+-|.    +.+.+..+.. .+.++..++ -.|...+...|++.+. .+.|++++++.|
T Consensus         7 ~~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~~-N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D   83 (281)
T TIGR01556         7 LEHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLGD-NQGIAGAQNQGLDASFRRGVQGVLLLDQD   83 (281)
T ss_pred             HHHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhccCCCeEEEECCC-CcchHHHHHHHHHHHHHCCCCEEEEECCC
Confidence            35778888888764  4677777653    2444444432 345544432 2355566777777652 257999999999


Q ss_pred             CcCCCHHHHHHHHHHHHhC
Q 028260          148 EPLIEPEIIDGVVKALQAA  166 (211)
Q Consensus       148 ~Pli~~~~i~~li~~~~~~  166 (211)
                      . .+.++.+..+++.+.+.
T Consensus        84 ~-~~~~~~l~~l~~~~~~~  101 (281)
T TIGR01556        84 S-RPGNAFLAAQWKLLSAE  101 (281)
T ss_pred             C-CCCHHHHHHHHHHHHhc
Confidence            9 67899999999988654

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan

Probab=93.94  E-value=1.7  Score=36.94  Aligned_cols=43  Identities=21%  Similarity=0.425  Sum_probs=33.5

Q ss_pred             HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCC
Q 028260          125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD  168 (211)
Q Consensus       125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d  168 (211)
                      ..+..++.....+.|+++++++|. .+.++.+..++..+..+++
T Consensus        83 g~l~~~~~~~~~~~~~i~~~DaD~-~~~p~~l~~~v~~~~~~~~  125 (254)
T cd04191          83 GNIADFCRRWGSRYDYMVVLDADS-LMSGDTIVRLVRRMEANPR  125 (254)
T ss_pred             HHHHHHHHHhCCCCCEEEEEeCCC-CCCHHHHHHHHHHHHhCCC
Confidence            445666665323579999999999 8999999999999875544

Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine

Probab=93.11  E-value=2  Score=34.23  Aligned_cols=93  Identities=16%  Similarity=0.207  Sum_probs=56.8

Q ss_pred             cCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHH-H---cCCeEeeCCc--ccCCChHHHHHHHHhhcc------
Q 028260           71 ILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQ-Q---FGADVIMTSE--SCRNGTERCNEALQKLEK------  136 (211)
Q Consensus        71 l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~-~---~~v~vi~~~~--~~~g~~~si~~al~~l~~------  136 (211)
                      ++....|..+++.+.+...-.+|+|+.+  .+...++++ .   .++.++....  .-.|...++..|++.+..      
T Consensus         6 ~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g   85 (191)
T cd06436           6 LNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEG   85 (191)
T ss_pred             cccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhccccc
Confidence            3566788899998886532235666654  333344443 1   1334443321  122444567777776531      


Q ss_pred             ---CCCEEEEEcCCCcCCCHHHHHHHHHHHH
Q 028260          137 ---KYDIVVNIQGDEPLIEPEIIDGVVKALQ  164 (211)
Q Consensus       137 ---~~d~vlv~~~D~Pli~~~~i~~li~~~~  164 (211)
                         +.|+++++++|. .++++.+..+...+.
T Consensus        86 ~~~~~d~v~~~DaD~-~~~~~~l~~~~~~~~  115 (191)
T cd06436          86 ADPERVIIAVIDADG-RLDPNALEAVAPYFS  115 (191)
T ss_pred             cCCCccEEEEECCCC-CcCHhHHHHHHHhhc
Confidence               247999999999 689999999776664

N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.

>PRK05454 glucosyltransferase MdoH; Provisional

Probab=93.06  E-value=2  Score=41.92  Aligned_cols=91  Identities=15%  Similarity=0.295  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCCCCC--eEEEEcC--cHHH--------HHHHHHcC--CeEeeCCcccC-C-ChHHHHHHHHhhccCCCE
Q 028260           77 IQRTWERSKLATTLD--HLVVATD--DEKI--------AECCQQFG--ADVIMTSESCR-N-GTERCNEALQKLEKKYDI  140 (211)
Q Consensus        77 l~~~i~~l~~~~~id--~IVVvt~--~e~i--------~~~~~~~~--v~vi~~~~~~~-g-~~~si~~al~~l~~~~d~  140 (211)
                      ++.+++.+...+.-+  +++|+.|  ++++        .+++++++  .+++++..... + ....+..+++....+.|+
T Consensus       144 L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~KaGNl~~~~~~~~~~~ey  223 (691)
T PRK05454        144 LRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKAGNIADFCRRWGGAYDY  223 (691)
T ss_pred             HHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccHHHHHHHHHhcCCCcCE
Confidence            555566555433322  5666665  2322        23444542  34544322111 1 223455666665446799


Q ss_pred             EEEEcCCCcCCCHHHHHHHHHHHHhCCC
Q 028260          141 VVNIQGDEPLIEPEIIDGVVKALQAAPD  168 (211)
Q Consensus       141 vlv~~~D~Pli~~~~i~~li~~~~~~~d  168 (211)
                      ++++|+|. .++++.+.+++..++.+++
T Consensus       224 ivvLDADs-~m~~d~L~~lv~~m~~dP~  250 (691)
T PRK05454        224 MVVLDADS-LMSGDTLVRLVRLMEANPR  250 (691)
T ss_pred             EEEEcCCC-CCCHHHHHHHHHHHhhCcC
Confidence            99999999 8999999999999875554

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

Probab=92.89  E-value=2.6  Score=32.56  Aligned_cols=89  Identities=16%  Similarity=0.204  Sum_probs=53.4

Q ss_pred             CCeehHHHHHHHHHcCCC-CCeEEEEcC--cHHHHHHHHHc----CCeE--eeCCcccCCChHHHHHHHHhhccCCCEEE
Q 028260           72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQF----GADV--IMTSESCRNGTERCNEALQKLEKKYDIVV  142 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~-id~IVVvt~--~e~i~~~~~~~----~v~v--i~~~~~~~g~~~si~~al~~l~~~~d~vl  142 (211)
                      +....++.+++.+.+... -.+|+|+-+  .+...++++++    ..++  +..+..-.+.......|++..  ..++++
T Consensus         7 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a--~g~~i~   84 (182)
T cd06420           7 NRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA--KGDYLI   84 (182)
T ss_pred             CChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHh--cCCEEE
Confidence            345667888888876432 236776654  23333333322    2222  222211112223455677765  579999


Q ss_pred             EEcCCCcCCCHHHHHHHHHHH
Q 028260          143 NIQGDEPLIEPEIIDGVVKAL  163 (211)
Q Consensus       143 v~~~D~Pli~~~~i~~li~~~  163 (211)
                      ++++|. .++++.+..+++.+
T Consensus        85 ~lD~D~-~~~~~~l~~~~~~~  104 (182)
T cd06420          85 FIDGDC-IPHPDFIADHIELA  104 (182)
T ss_pred             EEcCCc-ccCHHHHHHHHHHh
Confidence            999999 77999999999887

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm

>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function

Probab=92.75  E-value=2.7  Score=33.58  Aligned_cols=89  Identities=12%  Similarity=0.182  Sum_probs=55.6

Q ss_pred             CCeehHHHHHHHHHcCCC-CCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCC
Q 028260           72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE  148 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~-id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~  148 (211)
                      +....+..+++.+.+... ..+|+|+-+  .+...+++++.++.++..+   .|.......|++.+  ..+++++++.|.
T Consensus         9 n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~~~~~~~~~~---~g~~~a~n~g~~~a--~~~~i~~~D~D~   83 (221)
T cd02522           9 NEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARSAGVVVISSP---KGRARQMNAGAAAA--RGDWLLFLHADT   83 (221)
T ss_pred             CcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhcCCeEEEeCC---cCHHHHHHHHHHhc--cCCEEEEEcCCC
Confidence            334567788888776431 246766654  2344455555444433322   23334455677776  479999999998


Q ss_pred             cCCCHHHHHHHHHHHHhC
Q 028260          149 PLIEPEIIDGVVKALQAA  166 (211)
Q Consensus       149 Pli~~~~i~~li~~~~~~  166 (211)
                       .++++.+++++....+.
T Consensus        84 -~~~~~~l~~l~~~~~~~  100 (221)
T cd02522          84 -RLPPDWDAAIIETLRAD  100 (221)
T ss_pred             -CCChhHHHHHHHHhhcC
Confidence             67899999987766543

Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]

Probab=91.71  E-value=0.12  Score=47.60  Aligned_cols=77  Identities=22%  Similarity=0.157  Sum_probs=51.2

Q ss_pred             CCCCCCCCCCCCchhHHHHHHhhcchhhhhhceeehcccCCCCCCcEEEEEecCCCCCCCC---CccccccC---CeehH
Q 028260            4 KSICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFE---GKPLVNIL---GKPMI   77 (211)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~i~aIIlA~G~ssRlg---~K~ll~l~---GkpLl   77 (211)
                      +++|..+|-.- .++|.+.+  .+..   .+.++...++..-..-+..++++|||.|+|+|   +|.+.+++   |++++
T Consensus        58 ~~~~~~~p~p~-~~~~~~~~--~~~~---d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf  131 (477)
T KOG2388|consen   58 KPVGEIRPVPE-SKSWPLKE--RGLD---DVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLF  131 (477)
T ss_pred             CcccccCCCCc-cccceecc--cCch---hhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchh
Confidence            56666666555 66776543  2222   23333334444444456789999999999997   59999987   56799


Q ss_pred             HHHHHHHHc
Q 028260           78 QRTWERSKL   86 (211)
Q Consensus        78 ~~~i~~l~~   86 (211)
                      ++..+++..
T Consensus       132 ~~qae~il~  140 (477)
T KOG2388|consen  132 QIQAERILK  140 (477)
T ss_pred             hhhHHHHHH
Confidence            988877763

>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=89.50  E-value=6  Score=29.41  Aligned_cols=98  Identities=22%  Similarity=0.267  Sum_probs=55.6

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCC-eEEEEcC--cHHHHHHHHHcCCe---Ee-eCCcc
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQFGAD---VI-MTSES  119 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id-~IVVvt~--~e~i~~~~~~~~v~---vi-~~~~~  119 (211)
                      +|++.+|||+-.              ....|..+++.+.+....+ +++|+-+  .+...++++++...   +. .....
T Consensus         2 ~~~~siiip~~n--------------~~~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~   67 (291)
T COG0463           2 MPKVSVVIPTYN--------------EEEYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINER   67 (291)
T ss_pred             CccEEEEEeccc--------------hhhhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhcceEEEeeccc
Confidence            567888888743              3356677777776543332 5655543  34444444444322   22 22222


Q ss_pred             cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHH
Q 028260          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA  162 (211)
Q Consensus       120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~  162 (211)
                      -.|...+...++....  .++++++++|.- ..+ .+..+.+.
T Consensus        68 ~~g~~~~~~~~~~~~~--~~~~~~~d~d~~-~~~-~~~~~~~~  106 (291)
T COG0463          68 NGGLGAARNAGLEYAR--GDYIVFLDADDQ-HPP-ELIPLVAA  106 (291)
T ss_pred             CCChHHHHHhhHHhcc--CCEEEEEccCCC-CCH-HHHHHHHH
Confidence            2344456677777764  589999999996 544 44444433

>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]

Probab=89.20  E-value=12  Score=31.11  Aligned_cols=94  Identities=15%  Similarity=0.241  Sum_probs=56.7

Q ss_pred             ehHHHHHHHHHcCCCCC-eEEEEcC--c----HHHHHHHHHcC-CeEeeCCcc-cCCChHHHHHHHHhhccCCCEEEEEc
Q 028260           75 PMIQRTWERSKLATTLD-HLVVATD--D----EKIAECCQQFG-ADVIMTSES-CRNGTERCNEALQKLEKKYDIVVNIQ  145 (211)
Q Consensus        75 pLl~~~i~~l~~~~~id-~IVVvt~--~----e~i~~~~~~~~-v~vi~~~~~-~~g~~~si~~al~~l~~~~d~vlv~~  145 (211)
                      |++.|.+.......+.+ +|+++-|  +    +..+++.+.+| -++...+.. -.|-.++..+|+++.  +.+.+++++
T Consensus        19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a--~g~fiviMD   96 (238)
T KOG2978|consen   19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHA--TGDFIVIMD   96 (238)
T ss_pred             eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhc--cCCeEEEEe
Confidence            67777776655422333 5666554  2    22333333354 334333322 224346778899988  578999999


Q ss_pred             CCCcCCCHHHHHHHHHHHHhC-CCeEE
Q 028260          146 GDEPLIEPEIIDGVVKALQAA-PDAVF  171 (211)
Q Consensus       146 ~D~Pli~~~~i~~li~~~~~~-~d~vv  171 (211)
                      +|. -=.|+.|-++++..+++ .|.+.
T Consensus        97 aDl-sHhPk~ipe~i~lq~~~~~div~  122 (238)
T KOG2978|consen   97 ADL-SHHPKFIPEFIRLQKEGNYDIVL  122 (238)
T ss_pred             Ccc-CCCchhHHHHHHHhhccCcceee
Confidence            998 46788999999887654 35443

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A

Probab=89.06  E-value=1.3  Score=35.84  Aligned_cols=87  Identities=20%  Similarity=0.306  Sum_probs=48.8

Q ss_pred             eehHHHHHHHHHcCCCC-CeEEEEcC--c----HHHHHHHHHcC---CeEeeCCcccCC---ChHHHHHHHHhhccCCCE
Q 028260           74 KPMIQRTWERSKLATTL-DHLVVATD--D----EKIAECCQQFG---ADVIMTSESCRN---GTERCNEALQKLEKKYDI  140 (211)
Q Consensus        74 kpLl~~~i~~l~~~~~i-d~IVVvt~--~----e~i~~~~~~~~---v~vi~~~~~~~g---~~~si~~al~~l~~~~d~  140 (211)
                      ...+..+++.+...... -+|+|+.+  +    +.+.+++..++   +.++..+... |   ....+..+++..  +.|+
T Consensus        13 ~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~-g~~~k~~a~n~~~~~~--~~d~   89 (228)
T PF13641_consen   13 DDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNP-GPGGKARALNEALAAA--RGDY   89 (228)
T ss_dssp             HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----H-HHHHHHHHHHHHHHH-----SE
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCC-CcchHHHHHHHHHHhc--CCCE
Confidence            45777778877753221 24555553  2    23444544443   3444433211 2   123456777776  4899


Q ss_pred             EEEEcCCCcCCCHHHHHHHHHHHH
Q 028260          141 VVNIQGDEPLIEPEIIDGVVKALQ  164 (211)
Q Consensus       141 vlv~~~D~Pli~~~~i~~li~~~~  164 (211)
                      ++++++|. .++++.++.+++.+.
T Consensus        90 i~~lD~D~-~~~p~~l~~~~~~~~  112 (228)
T PF13641_consen   90 ILFLDDDT-VLDPDWLERLLAAFA  112 (228)
T ss_dssp             EEEE-SSE-EE-CHHHHHHHHHHH
T ss_pred             EEEECCCc-EECHHHHHHHHHHHH
Confidence            99999999 669999999999993

>PRK14716 bacteriophage N4 adsorption protein B; Provisional

Probab=87.17  E-value=13  Score=34.99  Aligned_cols=92  Identities=14%  Similarity=0.196  Sum_probs=51.7

Q ss_pred             cCCeehHHHHHHHH-HcCCCCC-eEEEEcC--c-H---HHHHHHHHcC-CeEeeCCccc-CCChHHHHHHHHhh------
Q 028260           71 ILGKPMIQRTWERS-KLATTLD-HLVVATD--D-E---KIAECCQQFG-ADVIMTSESC-RNGTERCNEALQKL------  134 (211)
Q Consensus        71 l~GkpLl~~~i~~l-~~~~~id-~IVVvt~--~-e---~i~~~~~~~~-v~vi~~~~~~-~g~~~si~~al~~l------  134 (211)
                      +++...|..+++.+ .+...-+ +|+|+.+  + +   .++++++++. +.++..+... .+....+..+++.+      
T Consensus        75 ~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~  154 (504)
T PRK14716         75 WREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFAFERE  154 (504)
T ss_pred             cCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhh
Confidence            35667888888864 4432212 5777652  2 2   3334444443 4433332221 12234555565543      


Q ss_pred             c-cCCCEEEEEcCCCcCCCHHHHHHHHHHH
Q 028260          135 E-KKYDIVVNIQGDEPLIEPEIIDGVVKAL  163 (211)
Q Consensus       135 ~-~~~d~vlv~~~D~Pli~~~~i~~li~~~  163 (211)
                      . .+.|+++++|+|. .++++.++.+...+
T Consensus       155 ~G~~~d~vvi~DAD~-~v~Pd~Lr~~~~~~  183 (504)
T PRK14716        155 RGIRFAIIVLHDAED-VIHPLELRLYNYLL  183 (504)
T ss_pred             cCCCcCEEEEEcCCC-CcCccHHHHHHhhc
Confidence            1 1348999999999 79999988765443

>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.70  E-value=9.3  Score=31.30  Aligned_cols=91  Identities=14%  Similarity=0.188  Sum_probs=61.2

Q ss_pred             eehHHHHHHHHHcCCCCCeEEEEcC----cHHHHHHHHHcCCeEeeCCcccCCChHHHHHH-HHhhccCCCEEEEEcCCC
Q 028260           74 KPMIQRTWERSKLATTLDHLVVATD----DEKIAECCQQFGADVIMTSESCRNGTERCNEA-LQKLEKKYDIVVNIQGDE  148 (211)
Q Consensus        74 kpLl~~~i~~l~~~~~id~IVVvt~----~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~a-l~~l~~~~d~vlv~~~D~  148 (211)
                      +-|++|+++...+.+.....+.-++    ....+++...+|....+.+.-. ...++++.. ...+. ....|+++--|.
T Consensus        37 r~lle~tl~~v~~~~~~~~a~l~~~d~d~~~dlq~m~~~Lg~~lvyqpqGd-d~gdRlars~~~a~~-~~~~VliIg~Dc  114 (211)
T COG3222          37 RQLLEDTLDAVAAAPVTARAVLLIGDLDSGGDLQEMRRWLGSFLVYQPQGD-DLGDRLARSHVDAFD-GSYPVLIIGMDC  114 (211)
T ss_pred             HHHHHHHHHHHHhhhhhhcceeeeecccccccHHHHHHHhhhheeecccCC-CHHHHHHHHHHHHhc-CCCcEEEEecCC
Confidence            4789999999988765555554332    2334555556677777765432 233565443 33343 336899999999


Q ss_pred             cCCCHHHHHHHHHHHHhC
Q 028260          149 PLIEPEIIDGVVKALQAA  166 (211)
Q Consensus       149 Pli~~~~i~~li~~~~~~  166 (211)
                      |-++.+.+..+..++.+.
T Consensus       115 P~lt~elLa~a~taL~~~  132 (211)
T COG3222         115 PGLTAELLADAFTALLQI  132 (211)
T ss_pred             CccCHHHHHHHHHHHhcC
Confidence            999999999999888654

>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2

Probab=85.32  E-value=8  Score=27.13  Aligned_cols=79  Identities=19%  Similarity=0.252  Sum_probs=44.7

Q ss_pred             eehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHc-CCeEeeCCcccCCCh--HHHHHHHHhhccCCCEEEEEcCCC
Q 028260           74 KPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-GADVIMTSESCRNGT--ERCNEALQKLEKKYDIVVNIQGDE  148 (211)
Q Consensus        74 kpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~-~v~vi~~~~~~~g~~--~si~~al~~l~~~~d~vlv~~~D~  148 (211)
                      .++|..-+.--... ++++++|..+  .+...++++++ ++.++....+.....  .....++..-..+.+|++.+++|-
T Consensus         4 ~~~L~~wl~~~~~l-G~d~i~i~d~~s~D~t~~~l~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~DE   82 (97)
T PF13704_consen    4 ADYLPEWLAHHLAL-GVDHIYIYDDGSTDGTREILRALPGVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDADE   82 (97)
T ss_pred             HHHHHHHHHHHHHc-CCCEEEEEECCCCccHHHHHHhCCCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEeeeE
Confidence            35566666666665 6999999875  34455666554 355544433332211  122333332223579999999998


Q ss_pred             cCCCH
Q 028260          149 PLIEP  153 (211)
Q Consensus       149 Pli~~  153 (211)
                      -+..+
T Consensus        83 fl~~~   87 (97)
T PF13704_consen   83 FLVPP   87 (97)
T ss_pred             EEecC
Confidence            54443

>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin

Probab=84.34  E-value=12  Score=30.94  Aligned_cols=32  Identities=19%  Similarity=0.429  Sum_probs=27.5

Q ss_pred             CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCe
Q 028260          137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA  169 (211)
Q Consensus       137 ~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~  169 (211)
                      +.|+++++++|. .+.++.+..+++.+..+++.
T Consensus        73 ~~e~i~~~DaD~-~~~~~~l~~l~~~~~~~p~v  104 (244)
T cd04190          73 DPEFILLVDADT-KFDPDSIVQLYKAMDKDPEI  104 (244)
T ss_pred             CCCEEEEECCCC-cCCHhHHHHHHHHHHhCCCE
Confidence            579999999999 67999999999998655553

Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.

>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional

Probab=83.69  E-value=35  Score=33.70  Aligned_cols=91  Identities=14%  Similarity=0.244  Sum_probs=54.4

Q ss_pred             cCCeehHHHHHHHHH-c--CCCCCeEEEEc--Cc----HHHHHHHHHcC-CeEeeCCcc-cCCChHHHHHHHHhh-----
Q 028260           71 ILGKPMIQRTWERSK-L--ATTLDHLVVAT--DD----EKIAECCQQFG-ADVIMTSES-CRNGTERCNEALQKL-----  134 (211)
Q Consensus        71 l~GkpLl~~~i~~l~-~--~~~id~IVVvt--~~----e~i~~~~~~~~-v~vi~~~~~-~~g~~~si~~al~~l-----  134 (211)
                      ++....+..+++.+. .  -+.+ +|++++  |+    +.+++++++++ +.++..+.. -.|....+..+++.+     
T Consensus        72 ~nE~~vi~~~i~~ll~~ldYP~~-eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN~~l~~~~~~e~  150 (727)
T PRK11234         72 WNETGVIGNMAELAATTLDYENY-HIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFER  150 (727)
T ss_pred             CcchhhHHHHHHHHHHhCCCCCe-EEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhhhc
Confidence            356678888888764 2  2233 677764  22    23444555554 444433322 123345667777765     


Q ss_pred             --ccCCCEEEEEcCCCcCCCHHHHHHHHHHHH
Q 028260          135 --EKKYDIVVNIQGDEPLIEPEIIDGVVKALQ  164 (211)
Q Consensus       135 --~~~~d~vlv~~~D~Pli~~~~i~~li~~~~  164 (211)
                        ..+.+.++++|+|. .++++.++ ++..+.
T Consensus       151 ~~~~~~~vvvi~DAD~-~v~pd~L~-~~~~l~  180 (727)
T PRK11234        151 SANFAFAGFILHDAED-VISPMELR-LFNYLV  180 (727)
T ss_pred             ccCCcccEEEEEcCCC-CCChhHHH-HHHhhc
Confidence              22457889999999 89999998 555553

>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides

Probab=82.66  E-value=35  Score=30.44  Aligned_cols=102  Identities=20%  Similarity=0.309  Sum_probs=58.7

Q ss_pred             CCee-hHHHHHHHHHcCC-C--CCeEEEEcC--cHHHHHHHHHc--CCeEeeCCccc-C--C------ChHHHH----HH
Q 028260           72 LGKP-MIQRTWERSKLAT-T--LDHLVVATD--DEKIAECCQQF--GADVIMTSESC-R--N------GTERCN----EA  130 (211)
Q Consensus        72 ~Gkp-Ll~~~i~~l~~~~-~--id~IVVvt~--~e~i~~~~~~~--~v~vi~~~~~~-~--g------~~~si~----~a  130 (211)
                      .++| -+.++|+.+.+.. .  -.+|+|+.|  .++..+.++.+  .++++..+... .  +      .-.++.    .|
T Consensus         9 yNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~ia~hyk~a   88 (334)
T cd02514           9 CNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYRIARHYKWA   88 (334)
T ss_pred             cCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEEEcccccccccCcccccchhhHHHHHHHHH
Confidence            4556 6889999998752 1  236777754  34455666555  44444332110 0  1      111222    36


Q ss_pred             HHhhcc--CCCEEEEEcCCCcCCCHHHHHHH---HHHHHhCCCeEEEEee
Q 028260          131 LQKLEK--KYDIVVNIQGDEPLIEPEIIDGV---VKALQAAPDAVFSTAV  175 (211)
Q Consensus       131 l~~l~~--~~d~vlv~~~D~Pli~~~~i~~l---i~~~~~~~d~vv~v~~  175 (211)
                      +..+-.  +.+.++++..|. .+.++.++-+   +..+++ ...+.++..
T Consensus        89 ln~vF~~~~~~~vIILEDDl-~~sPdFf~yf~~~l~~y~~-D~~v~~ISa  136 (334)
T cd02514          89 LTQTFNLFGYSFVIILEDDL-DIAPDFFSYFQATLPLLEE-DPSLWCISA  136 (334)
T ss_pred             HHHHHHhcCCCEEEEECCCC-ccCHhHHHHHHHHHHHHhc-CCCEEEEEe
Confidence            655432  378999999999 8999966554   444444 356666664

Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
1vic_A	262	Crystal Structure Of Cmp-kdo Synthetase Length = 26		3e-35
3oam_A	252	Crystal Structure Of Cytidylyltransferase From Vibr		1e-33
1vh3_A	262	Crystal Structure Of Cmp-kdo Synthetase Length = 26		3e-33
3duv_A	262	Crystal Structure Of 3-Deoxy-Manno-Octulosonate Cyt		3e-33
1h6j_A	245	The Three-Dimensional Structure Of Capsule-Specific		1e-31
3k8d_A	264	Crystal Structure Of E. Coli Lipopolysaccharide Spe		6e-31
3jtj_A	253	3-Deoxy-Manno-Octulosonate Cytidylyltransferase Fro		9e-31
3pol_A	276	2.3 Angstrom Crystal Structure Of 3-deoxy-manno-oct		2e-29
4fcu_A	253	1.9 Angstrom Crystal Structure Of 3-Deoxy-Manno-Oct		2e-29
1vh1_A	256	Crystal Structure Of Cmp-Kdo Synthetase Length = 25		1e-28
3tqd_A	256	Structure Of The 3-Deoxy-D-Manno-Octulosonate Cytid		3e-25
2y6p_A	234	Evidence For A Two-Metal-Ion-Mechanism In The Kdo-C		1e-21
1qwj_A	229	The Crystal Structure Of Murine Cmp-5-N-Acetylneura		2e-04

>pdb|1VIC|A Chain A, Crystal Structure Of Cmp-kdo Synthetase Length = 262

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 104/160 (65%), Gaps = 2/160 (1%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           IIPARFASSR  GKPL +I GKPMIQ  +E++ L +    +++ATD+E +A+  + FGA+
Sbjct: 6   IIPARFASSRLPGKPLADIKGKPMIQHVFEKA-LQSGASRVIIATDNENVADVAKSFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V MTS +  +GTER  E ++KL     +I+VNIQGDEPLI P I+  V   L      + 
Sbjct: 65  VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
           S AV     E+ F+PN VK + D  GY +YFSR +IPY++
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164

>pdb|3OAM|A Chain A, Crystal Structure Of Cytidylyltransferase From Vibrio Cholerae Length = 252

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 101/160 (63%), Gaps = 2/160 (1%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           +IPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDDE++ +  Q FG  
Sbjct: 6   VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGV 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V MTS + ++GTER  E + K+    D IVVN+QGDEPLI P II  V   L A    + 
Sbjct: 65  VCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
           + AV      + F+PN VK + D  GYA+YFSR  IP+++
Sbjct: 125 TLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDR 164

>pdb|1VH3|A Chain A, Crystal Structure Of Cmp-kdo Synthetase Length = 262

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 101/160 (63%), Gaps = 2/160 (1%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           IIPARFASSR  GKPL +I GKP IQ  +E++ L +    +++ATD+E +A+  + FGA+
Sbjct: 6   IIPARFASSRLPGKPLADIKGKPXIQHVFEKA-LQSGASRVIIATDNENVADVAKSFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V  TS +  +GTER  E ++KL     +I+VNIQGDEPLI P I+  V   L        
Sbjct: 65  VCXTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNXA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
           S AV     E+ F+PN VK + D  GY +YFSR +IPY++
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164

>pdb|3DUV|A Chain A, Crystal Structure Of 3-Deoxy-Manno-Octulosonate Cytidylyltransferase From Haemophilus Influenzae Complexed With The Substrate 3-Deoxy-Manno-Octulosonate In The- Configuration Length = 262

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 101/160 (63%), Gaps = 2/160 (1%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           IIPARFASSR  GKPL +I GKP IQ  +E++ L +    +++ATD+E +A+  + FGA+
Sbjct: 6   IIPARFASSRLPGKPLADIKGKPXIQHVFEKA-LQSGASRVIIATDNENVADVAKSFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V  TS +  +GTER  E ++KL     +I+VNIQGDEPLI P I+  V   L        
Sbjct: 65  VCXTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNXA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
           S AV     E+ F+PN VK + D  GY +YFSR +IPY++
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164

>pdb|1H6J|A Chain A, The Three-Dimensional Structure Of Capsule-Specific Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From Escherichia Coli Length = 245

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ V +IPAR+ SSR  GKPL++I+GKPMIQ  +ER+     +  + VATDD ++ +  Q
Sbjct: 1   SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQ 60
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
            FG   IMT     +GT+R  E + K+E   DI +N+QGDEP+I P  ++ +++ ++  P
Sbjct: 61  AFGGKAIMTRNDHESGTDRLVEVMHKVEA--DIYINLQGDEPMIRPRDVETLLQGMRDDP 118
Query: 168 DAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
               +T   ++   +A +P+ VK VV+    A+YFSR  IPY +
Sbjct: 119 ALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPR 162

>pdb|3K8D|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo Length = 264

Iteration: 1
 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 100/162 (61%), Gaps = 2/162 (1%)
Query: 51  VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
           V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G
Sbjct: 20  VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAG 78
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
            +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      
Sbjct: 79  GEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVG 138
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
           + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++
Sbjct: 139 MATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 180

>pdb|3JTJ|A Chain A, 3-Deoxy-Manno-Octulosonate Cytidylyltransferase From Yersinia Pestis Length = 253

Iteration: 1
 Score =  129 bits (325), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 96/162 (59%), Gaps = 2/162 (1%)
Query: 51  VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
           + IIPAR+AS+R  GKPL +I GKP +    ER+ LA+  D ++VATD   + +  +  G
Sbjct: 7   IAIIPARYASTRLPGKPLADIAGKPXVVHVXERA-LASGADRVIVATDHPDVVKAVEAAG 65
Query: 111 ADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
            +V +T    ++GTER  E ++       DI+VN+QGDEPL+ P II  V   L A    
Sbjct: 66  GEVCLTRADHQSGTERLAEVIEHYGFADDDIIVNVQGDEPLVPPVIIRQVADNLAACSAG 125
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
             + AV     E+AF+PN VK V D  GYA+YFSR  IP+ +
Sbjct: 126 XATLAVPIASSEEAFNPNAVKVVXDAQGYALYFSRATIPWER 167

>pdb|3POL|A Chain A, 2.3 Angstrom Crystal Structure Of 3-deoxy-manno-octulosonate Cytidylyltransferase (kdsb) From Acinetobacter Baumannii Length = 276

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 97/161 (60%), Gaps = 2/161 (1%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           +IPARF+SSR  GKPL+ I  +PMI R  +++K     D L VATDDE+IAE C+  G D
Sbjct: 28  VIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICRAEGVD 87
Query: 113 VIMTSESCRNGTERCNEALQ-KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V++TS    +GT+R +E  + K     DI+VN+QGDEPL+  +++  V K L   P+   
Sbjct: 88  VVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSM 147
Query: 172 STAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNK 211
           ST    +   D F  +  VK V+     A+YFSR  IPY++
Sbjct: 148 STLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDR 188

>pdb|4FCU|A Chain A, 1.9 Angstrom Crystal Structure Of 3-Deoxy-Manno-Octulosonate Cytidylyltransferase (Kdsb) From Acinetobacter Baumannii Without His- Tag Bound To The Active Site Length = 253

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 97/161 (60%), Gaps = 2/161 (1%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           +IPARF+SSR  GKPL+ I  +PMI R  +++K     D L VATDDE+IAE C+  G D
Sbjct: 5   VIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICRAEGVD 64
Query: 113 VIMTSESCRNGTERCNEALQ-KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V++TS    +GT+R +E  + K     DI+VN+QGDEPL+  +++  V K L   P+   
Sbjct: 65  VVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSM 124
Query: 172 STAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNK 211
           ST    +   D F  +  VK V+     A+YFSR  IPY++
Sbjct: 125 STLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDR 165

>pdb|1VH1|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase Length = 256

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 96/162 (59%), Gaps = 2/162 (1%)
Query: 51  VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
           V IIPAR+AS+R  GKPLV+I GKP I    ER++  +  + ++VATD E +A   +  G
Sbjct: 4   VVIIPARYASTRLPGKPLVDINGKPXIVHVLERAR-ESGAERIIVATDHEDVARAVEAAG 62
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
            +V  T    ++GTER  E ++K     D ++VN+QGDEP I   II  V   L      
Sbjct: 63  GEVCXTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPXIPATIIRQVADNLAQRQVG 122
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
             + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++
Sbjct: 123 XATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 164

>pdb|3TQD|A Chain A, Structure Of The 3-Deoxy-D-Manno-Octulosonate Cytidylyltransferase (Kdsb) From Coxiella Burnetii Length = 256

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 96/161 (59%), Gaps = 3/161 (1%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           IIPARF S+R  GK LV+I GKP IQ  +E S + +  + +V+ATDD++I +  + FGA 
Sbjct: 13  IIPARFDSTRLPGKALVDIAGKPXIQHVYE-SAIKSGAEEVVIATDDKRIRQVAEDFGAV 71
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V  TS   ++GTER  EA   L  + D I+V +QGDEPLI P+ I  + + L    +   
Sbjct: 72  VCXTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKV 131
Query: 172 STAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
           ++  T +   D  F+P+  K V++   YA+YFS   IP+ +
Sbjct: 132 ASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGR 172

>pdb|2Y6P|A Chain A, Evidence For A Two-Metal-Ion-Mechanism In The Kdo-Cytidylyltransferase Kdsb Length = 234

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 10/158 (6%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           IIPAR  S+R + KPL N+LGKP+I+  W    L  T + +++ATD E++ E  +    +
Sbjct: 6   IIPARLGSTRLKEKPLKNLLGKPLIR--WVVEGLVKTGERVILATDSERVKEVVEDL-CE 62
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172
           V +T     +G++R    ++ L+   D+++N QGDEP +  E I  + + L+     V  
Sbjct: 63  VFLTPSDLPSGSDRVLYVVRDLD--VDLIINYQGDEPFVYEEDIKLIFRELEKGERVV-- 118
Query: 173 TAVTSLKPEDAFD-PNRVKCVVDNHGYAIYFSRGLIPY 209
               + K ++A++ P  VK V+D  GYA+YFSR  IPY
Sbjct: 119 --TLARKDKEAYERPEDVKVVLDREGYALYFSRSPIPY 154

>pdb|1QWJ|A Chain A, The Crystal Structure Of Murine Cmp-5-N-Acetylneuraminic Acid Synthetase Length = 229

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 49  RVVGIIPARFASSRFEGKPLVNI---LGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC 105
            +  ++ AR  S   +G PL NI    G P+I      +  A     + V+TD ++I   
Sbjct: 3   HLAALVLARGGS---KGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENV 59
Query: 106 CQQFGADVI-MTSESCRNGTERCNEALQKL--EKKYDIVVNIQGDEPLIEPEIIDGVVKA 162
            +QFGA V   +SE+ ++ +   +  ++ L    + DIV NIQ   P + P  +  V + 
Sbjct: 60  AKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEM 119
Query: 163 L-QAAPDAVFST 173
           + +   D+VFS 
Sbjct: 120 IREEGYDSVFSV 131

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	6e-93
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	8e-88
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	1e-87
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	1e-84
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	1e-83
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	4e-83
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	2e-79
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	5e-22
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	3e-20
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	1e-11
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	2e-10
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	3e-10
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	2e-08
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	8e-08
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	8e-08
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	1e-07
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	3e-07
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	5e-07
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	2e-06
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	3e-06
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	4e-06
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	1e-05
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	2e-05
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	2e-04
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	3e-04
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	7e-04
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	7e-04

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* Length = 245

 Score =  270 bits (694), Expect = 6e-93
 Identities = 65/164 (39%), Positives = 101/164 (61%), Gaps = 2/164 (1%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ V +IPAR+ SSR  GKPL++I+GKPMIQ  +ER+     +  + VATDD ++ +  Q
Sbjct: 1   SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQ 60

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
            FG   IMT     +GT+R  E + K+E   DI +N+QGDEP+I P  ++ +++ ++  P
Sbjct: 61  AFGGKAIMTRNDHESGTDRLVEVMHKVE--ADIYINLQGDEPMIRPRDVETLLQGMRDDP 118

Query: 168 DAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
               +T   ++   +A +P+ VK VV+    A+YFSR  IPY +
Sbjct: 119 ALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPR 162

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A Length = 253

 Score =  258 bits (661), Expect = 8e-88
 Identities = 66/161 (40%), Positives = 96/161 (59%), Gaps = 2/161 (1%)

Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           +IPARF+SSR  GKPL+ I  +PMI R  +++K     D L VATDDE+IAE C+  G D
Sbjct: 5   VIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICRAEGVD 64

Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V++TS    +GT+R +E  +       DI+VN+QGDEPL+  +++  V K L   P+   
Sbjct: 65  VVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSM 124

Query: 172 STAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
           ST    +   ++    + VK V+     A+YFSR  IPY++
Sbjct: 125 STLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDR 165

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} Length = 256

 Score =  257 bits (660), Expect = 1e-87
 Identities = 64/165 (38%), Positives = 98/165 (59%), Gaps = 3/165 (1%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
               IIPARF S+R  GK LV+I GKPMIQ  +E +   +  + +V+ATDD++I +  + 
Sbjct: 9   EFRVIIPARFDSTRLPGKALVDIAGKPMIQHVYESAI-KSGAEEVVIATDDKRIRQVAED 67

Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           FGA V MTS   ++GTER  EA   L  +  +I+V +QGDEPLI P+ I  + + L    
Sbjct: 68  FGAVVCMTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHD 127

Query: 168 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
           +   ++  T +   ++ F+P+  K V++   YA+YFS   IP+ +
Sbjct: 128 NVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGR 172

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} Length = 252

 Score =  250 bits (640), Expect = 1e-84
 Identities = 72/165 (43%), Positives = 101/165 (61%), Gaps = 4/165 (2%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
               +IPAR+ S+R  GKPL +I GKPMIQ  +E++      D +++ATDDE++ +  Q 
Sbjct: 2   SFTVVIPARYQSTRLPGKPLADIGGKPMIQWVYEQAM-QAGADRVIIATDDERVEQAVQA 60

Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           FG  V MTS + ++GTER  E + K+      IVVN+QGDEPLI P II  V   L AA 
Sbjct: 61  FGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNL-AAC 119

Query: 168 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
            A  +T    ++   + F+PN VK + D  GYA+YFSR  IP+++
Sbjct: 120 SAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDR 164

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* Length = 262

 Score =  248 bits (635), Expect = 1e-83
 Identities = 73/165 (44%), Positives = 104/165 (63%), Gaps = 4/165 (2%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
               IIPARFASSR  GKPL +I GKPMIQ  +E++   +    +++ATD+E +A+  + 
Sbjct: 2   SFTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKAL-QSGASRVIIATDNENVADVAKS 60

Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           FGA+V MTS +  +GTER  E ++KL     +I+VNIQGDEPLI P I+  V   L A  
Sbjct: 61  FGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNL-AKF 119

Query: 168 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
           +   ++    +   E+ F+PN VK + D  GY +YFSR +IPY++
Sbjct: 120 NVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, cytoplasm, lipopolysaccharide biosynthesis, magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A* Length = 264

 Score =  246 bits (631), Expect = 4e-83
 Identities = 70/165 (42%), Positives = 99/165 (60%), Gaps = 4/165 (2%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
             V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   + 
Sbjct: 18  SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEA 76

Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
            G +V MT    ++GTER  E ++K       ++VN+QGDEP+I   II  V   L A  
Sbjct: 77  AGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNL-AQR 135

Query: 168 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
               +T    +   E+AF+PN VK V+D  GYA+YFSR  IP+++
Sbjct: 136 QVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 180

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} Length = 234

 Score =  236 bits (604), Expect = 2e-79
 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 8/163 (4%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           R   IIPAR  S+R + KPL N+LGKP+I+   E        + +++ATD E++ E  + 
Sbjct: 2   RRAVIIPARLGSTRLKEKPLKNLLGKPLIRWVVEGLVKT--GERVILATDSERVKEVVED 59

Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
              +V +T     +G++R    ++ L+   D+++N QGDEP +  E I  + + L+    
Sbjct: 60  LC-EVFLTPSDLPSGSDRVLYVVRDLD--VDLIINYQGDEPFVYEEDIKLIFRELEKGER 116

Query: 169 AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
               T     K E    P  VK V+D  GYA+YFSR  IPY +
Sbjct: 117 V--VTLARKDK-EAYERPEDVKVVLDREGYALYFSRSPIPYFR 156

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A Length = 228

 Score = 88.8 bits (221), Expect = 5e-22
 Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 17/143 (11%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           + + +I AR  S     K L  + G  ++  T   +  +   D ++V+TD   IAE  + 
Sbjct: 4   QNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKN 63

Query: 109 FGADVIM----------TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158
           FG +V++          +S S          AL+ +      V  +Q   PL     I  
Sbjct: 64  FGVEVVLRPAELASDTASSISG------VIHALETIGSNSGTVTLLQPTSPLRTGAHIRE 117

Query: 159 VVKALQAAP-DAVFSTAVTSLKP 180
                      +V S       P
Sbjct: 118 AFSLFDEKIKGSVVSACPMEHHP 140

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 Length = 229

 Score = 84.2 bits (209), Expect = 3e-20
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 18/135 (13%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
            +  ++ AR  S     K +  + G P+I      +  A     + V+TD ++I    +Q
Sbjct: 3   HLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQ 62

Query: 109 FGADVIM----------TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158
           FGA V            TS           E L     + DIV NIQ   P + P  +  
Sbjct: 63  FGAQVHRRSSETSKDSSTSLDA------IVEFLNYHN-EVDIVGNIQATSPCLHPTDLQK 115

Query: 159 VVKALQAA-PDAVFS 172
           V + ++    D+VFS
Sbjct: 116 VAEMIREEGYDSVFS 130

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Length = 199

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 18/134 (13%)

Query: 47  RSRVVGIIPARFASSRFEG-KPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIA 103
           RSRV G++ A   S R    K L+ +    ++  T   +      D L+V      +++ 
Sbjct: 3   RSRVTGVVLAAGYSRRLGTPKQLLPLGDTTLLGATLAMA-RRCPFDQLIVTLGGAADEVL 61

Query: 104 ECCQQFGADVIM-------TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEII 156
           E  +  G D+++        S S ++        L  ++   + +V + GD+P I    +
Sbjct: 62  EKVELDGLDIVLVDDAGLGCSSSLKSA-------LTWVDPTAEGIVLMLGDQPGITASAV 114

Query: 157 DGVVKALQAAPDAV 170
             ++   + A  AV
Sbjct: 115 ASLIAGGRGATIAV 128

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 20/150 (13%)

Query: 49  RVVGIIPA-----RFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA 103
           R   I+ A              K LV   G+PM++   E    A      V        A
Sbjct: 2   RPSAIVLAGGKEAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVPA 61

Query: 104 ECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163
                     ++ +           +AL+ +E     V+   GD P +  E +  V+   
Sbjct: 62  PALTLPDRGGLLENLE---------QALEHVE---GRVLVATGDIPHLTEEAVRFVLDKA 109

Query: 164 QAAPDAVFSTAVTSLKPEDAFDPNRVKCVV 193
             A        +   +  +A  P   +   
Sbjct: 110 PEAALVY---PIVPKEAVEARFPRTKRTYA 136

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A Length = 197

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 18/134 (13%)

Query: 47  RSRVVGIIPARFASSRFEG-KPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIA 103
            +++ G++ A   S+R    K L+      ++  T + +      D L++        + 
Sbjct: 3   ATQITGVVLAAGRSNRLGTPKQLLPYRDTTVLGATLDVA-RQAGFDQLILTLGGAASAVR 61

Query: 104 ECCQQFGADVIM-------TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEII 156
                 G DV++        + S R         L ++  +   +V + GD+P + P  +
Sbjct: 62  AAMALDGTDVVVVEDVERGCAASLRVA-------LARVHPRATGIVLMLGDQPQVAPATL 114

Query: 157 DGVVKALQAAPDAV 170
             ++    A    V
Sbjct: 115 RRIIDVGPATEIMV 128

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A 2xwn_A* Length = 231

 Score = 51.7 bits (125), Expect = 2e-08
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 22/136 (16%)

Query: 48  SRVVGIIPA-----RFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI 102
             VV I+PA     R A      K    + G+ +I+R  +    +  +D +VVA   ++ 
Sbjct: 6   GEVVAIVPAAGSGERLAVGV--PKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRT 63

Query: 103 AECCQQFGADVIMT------SESCRNGTERCNEALQKLEKKYDI-VVNIQ-GDEPLIEPE 154
            E  Q  G   ++       +++           L  L    +   V +      L  P 
Sbjct: 64  DEARQILGHRAMIVAGGSNRTDTVNLA-------LTVLSGTAEPEFVLVHDAARALTPPA 116

Query: 155 IIDGVVKALQAAPDAV 170
           ++  VV+AL+    AV
Sbjct: 117 LVARVVEALRDGYAAV 132

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234

 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 20/144 (13%)

Query: 49  RVVGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC 105
             V I+ A     R      K  + I G+ + +        +  +D +V+ T  E     
Sbjct: 13  MNVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVV 72

Query: 106 CQQFGADVIMT--------SESCRNGTERCNEALQKLEKKYDIVVNIQ-GDEPLIEPEII 156
            ++   + ++         S+S R+        L+ LEK     V +     P +  + +
Sbjct: 73  EKRVFHEKVLGIVEGGDTRSQSVRSA-------LEFLEKFSPSYVLVHDSARPFLRKKHV 125

Query: 157 DGVVKALQAAPDAVFSTAVT-SLK 179
             V++  +    A  +   + +L 
Sbjct: 126 SEVLRRARETGAATLALKNSDALV 149

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Length = 223

 Score = 49.8 bits (120), Expect = 8e-08
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 24/135 (17%)

Query: 49  RVVGIIPA-----RFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA 103
             V ++PA     R  + R   K  V + G P+++      + +  +D +V+A       
Sbjct: 2   ATVAVVPAAGSGERLRAGR--PKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTD 59

Query: 104 ECCQQFGADVIMT-------SESCRNGTERCNEALQKLEKKYDIVVNIQ-GDEPLIEPEI 155
           E    FG +  +        +ES     E   +A        + V+ +      L  P +
Sbjct: 60  ESKLVFGGEDSVIVSGGVDRTESVALALEAAGDA--------EFVL-VHDAARALTPPAL 110

Query: 156 IDGVVKALQAAPDAV 170
           I  VV AL+    AV
Sbjct: 111 IARVVAALKEGHSAV 125

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 25/143 (17%)

Query: 49  RVVGIIPA-----RFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVAT---DDE 100
            V  I+ A     R   S    K  + +LG+P+   ++        +  +VV       +
Sbjct: 4   SVSVILLAGGQGKRMKMSM--PKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRD 61

Query: 101 KIAECCQQFGADVIMTS------ESCRNGTERCNEALQKLEKKYDIVVNIQ-GDEPLIEP 153
              E  +    D+          +S  +G       LQ+++   ++V  I     PL+  
Sbjct: 62  IFEEYEESIDVDLSFAIPGKERQDSVYSG-------LQEIDVNSELVC-IHDSARPLVNT 113

Query: 154 EIIDGVVKALQAAPDAVFSTAVT 176
           E ++ V+K   A   AV      
Sbjct: 114 EDVEKVLKDGSAVGAAVLGVPAK 136

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Length = 197

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 24/135 (17%)

Query: 49  RVVGIIPARFASSRFEG-KPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIAEC 105
            +  II A     RF G K L  I   P+I RT    ++   L+ +++     +E +   
Sbjct: 2   NIGVIILAAGEGKRFGGDKLLAKIDNTPIIMRT---IRIYGDLEKIIIVGKYVNEMLPLL 58

Query: 106 CQQFGADVIM-------TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158
                  VI         S S + G       L+  +    ++V   GD P +  E ++ 
Sbjct: 59  M---DQIVIYNPFWNEGISTSLKLG-------LRFFKDYDAVLV-ALGDMPFVTKEDVNK 107

Query: 159 VVKALQAAPDAVFST 173
           ++   +    AV  T
Sbjct: 108 IINTFKPNCKAVIPT 122

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 14/127 (11%)

Query: 66  KPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIAECCQQFGAD--VIMTSESCR 121
           KPL+ + G+ +I         +  ++++ +AT  +  K  E       D   I+  ++  
Sbjct: 19  KPLIKLCGRCLIDYVVSPLLKS-KVNNIFIATSPNTPKTKEYINSAYKDYKNIVVIDTSG 77

Query: 122 NGTERCNEALQKLEKKYD---IVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTS 177
            G     E L +    +    +VV+   D   ++ +II+ +V              A+  
Sbjct: 78  KGYI---EDLNECIGYFSEPFLVVS--SDLINLKSKIINSIVDYFYCIKAKTPDVEALAV 132

Query: 178 LKPEDAF 184
           + P++ +
Sbjct: 133 MIPKEKY 139

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Length = 236

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 15/136 (11%), Positives = 43/136 (31%), Gaps = 25/136 (18%)

Query: 49  RVVGIIPA-----RFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEK 101
            V  ++PA     R  +     K  ++I  + +++ +         +  +V+A    D +
Sbjct: 7   DVCAVVPAAGFGRRMQTEC--PKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR 64

Query: 102 IAECCQQFGADVIMTS------ESCRNGTERCNEALQKLEKKYDIVVNIQ-GDEPLIEPE 154
            A+        + +        +S   G       L+        V+ +     P +  +
Sbjct: 65  FAQLPLANHPQITVVDGGDERADSVLAG-------LKAA-GDAQWVL-VHDAARPCLHQD 115

Query: 155 IIDGVVKALQAAPDAV 170
            +  ++   + +    
Sbjct: 116 DLARLLALSETSRTGG 131

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 29/150 (19%)

Query: 48  SRVVGIIPARFASSRFEG----KPLVNILGKPMIQRTWERSKLATTLDHLVVAT---DDE 100
           S +   I A    +R       K  + + GKP+I  T E+  L T  D +++++      
Sbjct: 2   SLIYAQILAGGKGTRMGNVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMN 61

Query: 101 KIAECCQQFGADVIMT--------SESCRNGTERCNEALQKLEKKY-----DIVVNIQ-G 146
              +  +++ +D  +         +E+  NG       ++ +EK Y     DI+V     
Sbjct: 62  HAEDNIKKYISDDRIVVIEGGEDRNETIMNG-------IRFVEKTYGLTDDDIIV-THDA 113

Query: 147 DEPLIEPEIIDGVVKALQAAPDAVFSTAVT 176
             P +   II+  + A              
Sbjct: 114 VRPFLTHRIIEENIDAALETGAVDTVIEAL 143

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 35/145 (24%)

Query: 48  SRVVGIIPA-----RFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDE 100
            + + +IPA     RF + +   K  V I  K +++      +    +D  VV    +D 
Sbjct: 5   RKNIALIPAAGIGVRFGADK--PKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDT 62

Query: 101 KIAECCQQFGADVIMT------SESCRNGTERCNEALQKLEKKYDIVVNIQGDE------ 148
              +    F    +        +E+ RNG       + KL +           +      
Sbjct: 63  FADKVQTAFPQVRVWKNGGQTRAETVRNG-------VAKLLET----GLAAETDNILVHD 111

Query: 149 ---PLIEPEIIDGVVKALQAAPDAV 170
                +  E +  +++    A +  
Sbjct: 112 AARCCLPSEALARLIEQAGNAAEGG 136

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Length = 371

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 30/146 (20%)

Query: 48  SRVVGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAE 104
           S +  I+ A   S+RF     K  + +   P+     +          +VV + +     
Sbjct: 2   SEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYM- 60

Query: 105 CCQQFGADVIMT------SESCRNGTERCNEALQKLEKKY----DIVVNIQGDEPLIEPE 154
             ++F  +          +ES +         L+ ++ ++    D+         L+   
Sbjct: 61  --KKFTKNYEFIEGGDTRAESLKKA-------LELIDSEFVMVSDVA------RVLVSKN 105

Query: 155 IIDGVVKALQAAPDAVFSTAVT-SLK 179
           + D +++ L  A     +  V  +  
Sbjct: 106 LFDRLIENLDKADCITPALKVADTTL 131

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} Length = 236

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 34/158 (21%)

Query: 49  RVVGIIPARFASSRFEGKP--LVNILGKPMIQRTWERSKLATTLDH----LVVATDDEKI 102
            V  +IPA     R    P   + + G+ +++ T     LA   D     + +    E  
Sbjct: 25  EVSVLIPAAGNGLRLGRGPKAFLQVGGRTLLEWT-----LAAFRDAAEVLVALPPGAEPP 79

Query: 103 AECCQQF---GADVIMT-SESCRNGTERCNEALQKLEKKYDIVVNIQ-GDEPLIEPEIID 157
                 F   GA    T   S           L+         V +     P +   ++ 
Sbjct: 80  KGLGAVFLEGGA----TRQASVARL-------LEAASLPL---VLVHDVARPFVSRGLVA 125

Query: 158 GVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVD 194
            V++A Q +  AV    V  +L    A +      VV 
Sbjct: 126 RVLEAAQRSGAAVPVLPVPDTLM---APEGEAYGRVVP 160

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Length = 236

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 17/143 (11%)

Query: 50  VVGIIPARFASSRFEG----KPLVNILGKPMIQRTWERSKLATTLDHLVVAT---DDEKI 102
           +   I A    +R       K  + +  +P++  T E+  L  +++ +VV          
Sbjct: 3   IYAGILAGGTGTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHA 62

Query: 103 AECCQQFGADVIMTSESCRNGTERCN---EALQKLEKKY-----DIVVNIQ-GDEPLIEP 153
            +   ++           + G +R       ++ ++        DIVV       P I  
Sbjct: 63  EDLVDKYLPLYKERIIITKGGADRNTSIKNIIEAIDAYRPLTPEDIVV-THDSVRPFITL 121

Query: 154 EIIDGVVKALQAAPDAVFSTAVT 176
            +I   ++  Q            
Sbjct: 122 RMIQDNIQLAQNHDAVDTVVEAV 144

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} Length = 201

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 37  RAYLGRSKNFRSRVVGIIPARFASSRF-EGKPLVNILGKPMIQRTWERSKLATTLDHLVV 95
           R +  R  +        + A   S RF E K L  I GK +I+R +E     +    + +
Sbjct: 2   RTFTWRKGSLSKVNTCYVLAGGKSKRFGEDKLLYEIKGKKVIERVYET--AKSVFKEVYI 59

Query: 96  ATDDEKIAECCQQFGADVI 114
              D    E      A V+
Sbjct: 60  VAKDR---EKFSFLNAPVV 75

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} Length = 208

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 60  SSRF-EGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVI 114
             R    K  V + GK +I+   E+   +      V   + +   +   ++ A+ I
Sbjct: 11  GRRIGMEKTEVMLCGKKLIEWVLEK--YSPFQTVFVCRDEKQ-AEKLSSRYEAEFI 63

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255

 Score = 38.5 bits (88), Expect = 7e-04
 Identities = 16/160 (10%), Positives = 36/160 (22%), Gaps = 22/160 (13%)

Query: 53  IIPARFASSRFEG------KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC- 105
           +IP    SSRF        K ++   G+ + + +             +    +       
Sbjct: 3   VIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVF 62

Query: 106 -------CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158
                         +       R   E     L++L K+      +     +    I   
Sbjct: 63  VREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQG-----VDYQGSITVFNIDTF 117

Query: 159 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198
               +           +   +       N      ++ G 
Sbjct: 118 RPNFVFPDISQHSDGYLEVFQG---GGDNWSFAKPEHAGS 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.97
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.96
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	99.96
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.96
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	99.93
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	99.91
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.91
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	99.91
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	99.89
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	99.89
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	99.88
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	99.86
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	99.84
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	99.82
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	99.82
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	99.82
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.82
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	99.82
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	99.81
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	99.8
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.8
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.8
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	99.79
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.78
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	99.77
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	99.77
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.76
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	99.76
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.75
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.75
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	99.73
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	99.73
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	99.72
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	99.71
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	99.71
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.7
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	99.7
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	99.7
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	99.69
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	99.68
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	99.67
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	99.67
3pnn_A	303	Conserved domain protein; structural genomics, PSI	99.65
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	99.64
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.63
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.62
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	99.61
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	99.6
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	99.56
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.53
2i5e_A	211	Hypothetical protein MM_2497; APC86122, methanosar	99.04
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	98.83
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	98.77
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	98.76
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	98.52
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	98.48
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	98.37
3cgx_A	242	Putative nucleotide-diphospho-sugar transferase; Y	98.07
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	97.0
3bcv_A	240	Putative glycosyltransferase protein; protein stru	96.95
3ckj_A	329	Putative uncharacterized protein; mycobacteria, un	96.89
3ogz_A	630	UDP-sugar pyrophosphorylase; LEFT handed beta heli	96.77
3r3i_A	528	UTP--glucose-1-phosphate uridylyltransferase; ross	96.74
4hg6_A	802	Cellulose synthase subunit A; membrane translocati	96.64
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	96.53
3gue_A	484	UTP-glucose-1-phosphate uridylyltransferase 2; pho	96.39
3f1y_A	387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	96.09
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	96.06
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	95.86
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	95.84
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	95.35
4fix_A	657	UDP-galactofuranosyl transferase GLFT2; CAZY GT-2	95.33
2bo4_A	397	Mannosylglycerate synthase; catalysis, glycosyltra	94.33
3l7i_A	729	Teichoic acid biosynthesis protein F; GT-B fold, m	89.86

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=99.97  E-value=1.9e-29  Score=213.76  Aligned_cols=162  Identities=40%  Similarity=0.667  Sum_probs=135.2

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC  127 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si  127 (211)
                      |++.+||||||.|+|||+|+|++++|||||+|+++++.++ ++++|+|+++++++.++++.+++++++..+...+++.++
T Consensus         8 M~~~aIIlA~G~stRl~~K~L~~i~GkPli~~~l~~l~~~-~i~~VvVvt~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~i   86 (256)
T 3tqd_A            8 MEFRVIIPARFDSTRLPGKALVDIAGKPMIQHVYESAIKS-GAEEVVIATDDKRIRQVAEDFGAVVCMTSSDHQSGTERI   86 (256)
T ss_dssp             -CCEEEEECCCC---CTTGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHH
T ss_pred             CCceEEEEcCCCCCCCCCCCeeeECCchHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHcCCeEEEeCCCCCCcHHHH
Confidence            7899999999999999999999999999999999999988 499999999999999998889999877655556777788


Q ss_pred             HHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeC-CCCCCCCCCCeEEEeCCCccEEeeecC
Q 028260          128 NEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRG  205 (211)
Q Consensus       128 ~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~-~~~~~~d~~~~~~v~~~~~~~~~~~~~  205 (211)
                      ..+++.+. .+.|.+++++||+||++++.++.+++.+.++++..++....++ ++++..|++.+|++.|.+|+++||+|+
T Consensus        87 ~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g~~l~fsr~  166 (256)
T 3tqd_A           87 AEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHA  166 (256)
T ss_dssp             HHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESS
T ss_pred             HHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEECCCCEEeEEecC
Confidence            88998873 2468999999999999999999999999765444455555565 345678999999999999999999999


Q ss_pred             CCCCC
Q 028260          206 LIPYN  210 (211)
Q Consensus       206 ~~~~~  210 (211)
                      ++||.
T Consensus       167 pip~~  171 (256)
T 3tqd_A          167 PIPWG  171 (256)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            99875

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=99.96  E-value=9.7e-29  Score=209.09  Aligned_cols=160  Identities=41%  Similarity=0.639  Sum_probs=135.1

Q ss_pred             EEEEEecCCCCCCCCCccccccCCeehHHHHH-HHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHH
Q 028260           50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTW-ERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCN  128 (211)
Q Consensus        50 i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i-~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~  128 (211)
                      +.+||||||.|+||++|+|++++|||||+|++ +++.++ ++++|+|+++++++.++++.+++++++..+...+++.++.
T Consensus         2 ~~aiIlA~G~stR~~~K~L~~i~GkPli~~~i~~~~~~~-~~~~vvVvt~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~   80 (253)
T 4fcu_A            2 KHIVIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVE-GFDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRLS   80 (253)
T ss_dssp             EEEEEECCSCCTTSTTGGGSEETTEEHHHHHHHHHHTCT-TCCEEEEEESCHHHHHHHHTTTCCEEECCTTCCCHHHHHH
T ss_pred             eEEEEEeCCCCCCCCCCceeeECCeEhHHHHHHHHHHhc-CCCEEEEECCHHHHHHHHHHcCCeEEEeCCCCCChHHHHH
Confidence            46999999999999999999999999999999 999987 4999999999999999988889988765545556778899


Q ss_pred             HHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCC-CCCCCCCCCeEEEeCCCccEEeeecCC
Q 028260          129 EALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGL  206 (211)
Q Consensus       129 ~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~-~~~~~d~~~~~~v~~~~~~~~~~~~~~  206 (211)
                      .|++.+.. +.|++++++||+||+++++|+.+++.+.++++..++...++++ +++..||+.+|++.|.+|+++||||++
T Consensus        81 ~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~kvv~d~~g~~l~fsr~~  160 (253)
T 4fcu_A           81 EVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRAT  160 (253)
T ss_dssp             HHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCEEEECTTSBEEEEESSC
T ss_pred             HHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccEEEECCCCeEEEecCCC
Confidence            99988742 4689999999999999999999999997654433333444443 245678899999999999999999999


Q ss_pred             CCCC
Q 028260          207 IPYN  210 (211)
Q Consensus       207 ~~~~  210 (211)
                      +|+.
T Consensus       161 ip~~  164 (253)
T 4fcu_A          161 IPYD  164 (253)
T ss_dssp             CSCC
T ss_pred             CCCC
Confidence            9875

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=99.96  E-value=1.1e-28  Score=210.09  Aligned_cols=166  Identities=42%  Similarity=0.696  Sum_probs=136.8

Q ss_pred             CCCCCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCC
Q 028260           43 SKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRN  122 (211)
Q Consensus        43 ~~~~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g  122 (211)
                      ++...|++.+||||||.|+|||+|+|++++|||||+|+++++.+++ +++|+|+++++++.++++.+++++++..+...+
T Consensus        12 ~~~~~M~~~aIIlA~G~stRlp~K~L~~i~GkPmi~~~l~~l~~~~-i~~IvV~t~~~~i~~~~~~~g~~v~~~~~~~~~   90 (264)
T 3k8d_A           12 PRGSHMSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESG-AERIIVATDHEDVARAVEAAGGEVCMTRADHQS   90 (264)
T ss_dssp             ------CCEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCTTCCS
T ss_pred             cCCCCCceEEEEEcCCCCCCCCCcceeeECCeEHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHcCCEEEEecCCCCC
Confidence            4566788999999999999999999999999999999999999985 899999999999999888889988776555567


Q ss_pred             ChHHHHHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCC-CCCCCCCCCeEEEeCCCccEE
Q 028260          123 GTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAI  200 (211)
Q Consensus       123 ~~~si~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~-~~~~~d~~~~~~v~~~~~~~~  200 (211)
                      ++.++..+++.+. .+.|++++++||+||++++.++.+++.+.+. ++.+++...+++ +++..|++.+|++.|.+|+++
T Consensus        91 Gt~~i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~-~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~~l  169 (264)
T 3k8d_A           91 GTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQR-QVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYAL  169 (264)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTS-SCSEEEEEEECCSHHHHTCTTSCEEEECTTSBEE
T ss_pred             CHHHHHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhc-CCCEEEEEEEcCCHHHccCCCceEEEECCCCeEE
Confidence            7778888888773 2468999999999999999999999998643 333444455543 356778999999999999999


Q ss_pred             eeecCCCCCC
Q 028260          201 YFSRGLIPYN  210 (211)
Q Consensus       201 ~~~~~~~~~~  210 (211)
                      +|||+++|+.
T Consensus       170 ~fsr~~ip~~  179 (264)
T 3k8d_A          170 YFSRATIPWD  179 (264)
T ss_dssp             EEESSCCSCC
T ss_pred             EEecCCCCCC
Confidence            9999998864

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=99.96  E-value=2.9e-28  Score=205.20  Aligned_cols=161  Identities=45%  Similarity=0.743  Sum_probs=136.2

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC  127 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si  127 (211)
                      |++.+||||||.|+|||+|+|++++|||||+|+++++.+++ +++|+|+++++++.+++.++++++++..+....++.++
T Consensus         1 M~~~aiIlA~G~stRlp~K~L~~i~GkPli~~~l~~l~~~~-~~~ivVv~~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~~   79 (252)
T 3oam_A            1 MSFTVVIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAG-ADRVIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERL   79 (252)
T ss_dssp             CCEEEEEECCCCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHH
T ss_pred             CceEEEEecCcCCCCCCCcceeeECCEEHHHHHHHHHHhCC-CCeEEEECCHHHHHHHHHHcCCEEEEcCCCCCCcHHHH
Confidence            68999999999999999999999999999999999999985 89999999999999998888998877655556777778


Q ss_pred             HHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCC-CCCCCCCCCeEEEeCCCccEEeeecC
Q 028260          128 NEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRG  205 (211)
Q Consensus       128 ~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~-~~~~~d~~~~~~v~~~~~~~~~~~~~  205 (211)
                      ..+++.+. .+.|.+++++||+||+++++++.+++.+.++ ++.+++..+++. ++...|++..+++.|.+|++++|||+
T Consensus        80 ~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~-~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~v~~fsr~  158 (252)
T 3oam_A           80 AEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAAC-SAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRA  158 (252)
T ss_dssp             HHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHS-SCSEEEEEEEECCHHHHTCTTSCEEEECTTSBEEEEESS
T ss_pred             HHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhc-CCCEEEEeeecCCHHHhhCCCceEEEECCCCeEEEEeCC
Confidence            88888773 2468999999999999999999999998653 223344444543 45677888999999999999999999


Q ss_pred             CCCCC
Q 028260          206 LIPYN  210 (211)
Q Consensus       206 ~~~~~  210 (211)
                      ++|+.
T Consensus       159 ~i~~~  163 (252)
T 3oam_A          159 TIPWD  163 (252)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            98864

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=99.93  E-value=1.3e-24  Score=180.68  Aligned_cols=157  Identities=39%  Similarity=0.677  Sum_probs=126.9

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC  127 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si  127 (211)
                      |++.+||||||.|+|||+|+|++++|+|||+|+++++.+++.+++|+|+++++++.+++.+++++++.+++...+++.++
T Consensus         1 m~~~aiIlA~G~~~R~~~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~   80 (245)
T 1h7e_A            1 SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRL   80 (245)
T ss_dssp             CCEEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCHHHHHHHHHTTCEEEECCSCCSSHHHHH
T ss_pred             CCeEEEEEcCCcCCCCCCCcccccCCchHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHHcCCeEEeCCCccCCcHHHH
Confidence            67899999999999999999999999999999999999986569999999988888888888888877654555667777


Q ss_pred             HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC--CCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEeeecC
Q 028260          128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA--PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRG  205 (211)
Q Consensus       128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~~~  205 (211)
                      ..+++.+  +.|++++++||+||++++.++.+++.+.++  .+.++.+.  +.++....+++.++++.+.+|++.+|+++
T Consensus        81 ~~~~~~~--~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  156 (245)
T 1h7e_A           81 VEVMHKV--EADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCH--AISAAEAAEPSTVKVVVNTRQDALYFSRS  156 (245)
T ss_dssp             HHHHHHS--CCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEE--EECHHHHTCTTSCEEEECTTCBEEEEESS
T ss_pred             HHHHHhC--CCCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEee--cCCHHHhcCCCCcEEEECCCCcEEEeecC
Confidence            7888877  468999999999999999999999988654  45544433  22222223556778777889999999886


Q ss_pred             CCC
Q 028260          206 LIP  208 (211)
Q Consensus       206 ~~~  208 (211)
                      ..|
T Consensus       157 ~~~  159 (245)
T 1h7e_A          157 PIP  159 (245)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            554

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=99.91  E-value=1e-23  Score=173.71  Aligned_cols=151  Identities=20%  Similarity=0.242  Sum_probs=114.5

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCc----ccCC
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSE----SCRN  122 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~----~~~g  122 (211)
                      .|++.+||||||.|+||++|+|++++|+|||+|+++++.+++.+++|+|+++++++.+++++++++++.++.    ...|
T Consensus         2 ~m~~~aiIlA~G~g~R~~~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g   81 (228)
T 1ezi_A            2 EKQNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTAS   81 (228)
T ss_dssp             CCEEEEEEECCSSCSSSTTTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHTTCEEEECCC------CH
T ss_pred             CCceEEEEecCCCCCCCCCcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCEEEeCchHHcCCCCC
Confidence            378899999999999999999999999999999999999886689999999988888888888888766543    2223


Q ss_pred             ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEe
Q 028260          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY  201 (211)
Q Consensus       123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~  201 (211)
                      ...++..|++.+..+.|++++++||+||++++.++.+++.+.+ ..+.++++....  .    ++....+ .+.+|++..
T Consensus        82 ~~~sv~~~l~~~~~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~--~----~p~~~~~-~~~~g~~~~  154 (228)
T 1ezi_A           82 SISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPME--H----HPLKTLL-QINNGEYAP  154 (228)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECS--S----CTTSCEE-ECC--CEEE
T ss_pred             hHHHHHHHHHHhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecC--C----CcceeeE-EcCCCcEee
Confidence            4568889999884335899999999999999999999988754 345555433221  1    1222222 367777777


Q ss_pred             eec
Q 028260          202 FSR  204 (211)
Q Consensus       202 ~~~  204 (211)
                      |.+
T Consensus       155 ~~~  157 (228)
T 1ezi_A          155 MRH  157 (228)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            755

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=99.91  E-value=1.9e-23  Score=175.96  Aligned_cols=158  Identities=45%  Similarity=0.744  Sum_probs=123.3

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC  127 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si  127 (211)
                      |++.+||||||.|+|||+|+|++++|+|||+|+++++.+++ +++|+|+++++++.++++++++.++.+++...+++.++
T Consensus         1 m~~~aiIlA~G~g~R~~~K~l~~~~gkpli~~~l~~l~~~~-~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~   79 (262)
T 1vic_A            1 MSFTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSG-ASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERL   79 (262)
T ss_dssp             -CCEEEEECCCCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCCSSCCHHHHH
T ss_pred             CCcEEEEEcCCCCCCCCCCccccCCCeEHHHHHHHHHHhCC-CceEEEECCcHHHHHHHHhcCCEEEECCccccCChHHH
Confidence            56789999999999999999999999999999999999884 59999999988888888888888877654445566666


Q ss_pred             HHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCC-CCCCCCCCeEEEeCCCccEEeeec
Q 028260          128 NEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSR  204 (211)
Q Consensus       128 ~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~-~~~~d~~~~~~v~~~~~~~~~~~~  204 (211)
                      ..+++.+.. +.+++++++||+||++++.++.+++.+.+ ..+.++.+.  +... ++..++..++++.+.+|++++|++
T Consensus        80 ~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~v~~f~~  157 (262)
T 1vic_A           80 AEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAV--KIHDAEELFNPNAVKVLTDKDGYVLYFSR  157 (262)
T ss_dssp             HHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEE--ECCCHHHHTCTTSCEEEECTTSBEEEEES
T ss_pred             HHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEE--ecCCHHHhcCCCceEEEECCCCCEeeeec
Confidence            666666532 36899999999999999999999998854 345544332  3211 123345667888888999999998


Q ss_pred             CCCC
Q 028260          205 GLIP  208 (211)
Q Consensus       205 ~~~~  208 (211)
                      +..|
T Consensus       158 ~~~~  161 (262)
T 1vic_A          158 SVIP  161 (262)
T ss_dssp             SCSS
T ss_pred             CCCC
Confidence            7654

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=99.91  E-value=5e-23  Score=169.70  Aligned_cols=153  Identities=36%  Similarity=0.591  Sum_probs=120.2

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC  127 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si  127 (211)
                      |++.+||||||.|+||++|+|++++|+|||+|+++++.++  +++|+|+++++++.+++.++ +.+++.++...+++.+.
T Consensus         1 m~~~aiIlA~G~g~R~~~K~l~~i~g~pli~~~l~~~~~~--~~~i~v~~~~~~i~~~~~~~-~~~~~~~~~~~~g~~~~   77 (234)
T 2y6p_A            1 MRRAVIIPARLGSTRLKEKPLKNLLGKPLIRWVVEGLVKT--GERVILATDSERVKEVVEDL-CEVFLTPSDLPSGSDRV   77 (234)
T ss_dssp             -CEEEEEECCSCCTTTTTGGGCEETTEEHHHHHHHHHHTT--TSCEEEEESCHHHHHHHTTT-SEEEECCTTCCSHHHHH
T ss_pred             CceEEEEEcCCCCCCCCCCcceeECCEEHHHHHHHHHHHh--CCEEEEECChHHHHHHHHhc-eEEEECCcccccchHHH
Confidence            5788999999999999999999999999999999999986  89999999888888777666 67766655445666666


Q ss_pred             HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEeeecCCC
Q 028260          128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~~~~~  207 (211)
                      ..+++.+  +.|++++++||+||++++.++++++.+.++.+ ++++...  ...+..+++.++++.+.+|++..|.+++.
T Consensus        78 ~~~~~~~--~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~g~v~~~~e~~~  152 (234)
T 2y6p_A           78 LYVVRDL--DVDLIINYQGDEPFVYEEDIKLIFRELEKGER-VVTLARK--DKEAYERPEDVKVVLDREGYALYFSRSPI  152 (234)
T ss_dssp             HHHHTTC--CCSEEEECCTTCCCCCHHHHHHHHHHHHHTCS-EEEEEEE--CSGGGGCTTSCEEEECTTSBEEEEESSCC
T ss_pred             HHHHHhC--CCCEEEEecCCcCcCCHHHHHHHHHHHHhCCC-eEEEecC--CHHHhcCCCceEEEEcCCCCEeeeecCCC
Confidence            6777766  46899999999999999999999998865444 3333322  11223355677777788999999988764


Q ss_pred             C
Q 028260          208 P  208 (211)
Q Consensus       208 ~  208 (211)
                      +
T Consensus       153 ~  153 (234)
T 2y6p_A          153 P  153 (234)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=99.89  E-value=5e-23  Score=171.84  Aligned_cols=149  Identities=23%  Similarity=0.317  Sum_probs=114.0

Q ss_pred             cEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc--CCeEeeCCcccCCC
Q 028260           49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF--GADVIMTSESCRNG  123 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~--~v~vi~~~~~~~g~  123 (211)
                      ++.+||||||.|+||+   +|+|++++|+|||+|+++++.+++.+++|+|+++++++..+.+..  .+.++..   ..+.
T Consensus         7 ~~~aIIlAaG~g~Rmg~~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~v~~v~g---g~~r   83 (231)
T 3q80_A            7 EVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGHRAMIVAG---GSNR   83 (231)
T ss_dssp             CEEEEEECCCCCTTTCSSSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGGGCEEEEC---CSSH
T ss_pred             ceEEEEECCCCCccCCCCCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcCCeEEEcC---CCch
Confidence            4789999999999998   599999999999999999999887799999999876543332211  3444321   1123


Q ss_pred             hHHHHHHHHhhccC--CCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEE-EEeeee-C---CC----CCCCCCCCeEEE
Q 028260          124 TERCNEALQKLEKK--YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF-STAVTS-L---KP----EDAFDPNRVKCV  192 (211)
Q Consensus       124 ~~si~~al~~l~~~--~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv-~v~~~~-~---~~----~~~~d~~~~~~v  192 (211)
                      ..++++|++.+...  .|++++++||+||+++++|+++++.+.++.++++ ++++++ +   +.    ..+.||+.++.+
T Consensus        84 ~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~~~~~~i~~~p~~dt~~~~~~~g~v~~~~~r~~l~~~  163 (231)
T 3q80_A           84 TDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAV  163 (231)
T ss_dssp             HHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHTTCSEEEEEECCSSCEEEECTTSBEEECCCGGGEEEE
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhhcCCeEEEEEeccCCEEEEcCCCcEEEecchhheEEE
Confidence            57899999988532  5899999999999999999999999876345554 444444 2   22    247899999999


Q ss_pred             eCCCccEE
Q 028260          193 VDNHGYAI  200 (211)
Q Consensus       193 ~~~~~~~~  200 (211)
                      |+||.|..
T Consensus       164 qTPq~F~~  171 (231)
T 3q80_A          164 QTPQGFTT  171 (231)
T ss_dssp             CSCEEEEH
T ss_pred             cCCcEEEH
Confidence            99999854

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=99.89  E-value=1.5e-22  Score=167.41  Aligned_cols=127  Identities=26%  Similarity=0.345  Sum_probs=107.7

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCc----ccCC
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSE----SCRN  122 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~----~~~g  122 (211)
                      +|++.+||||||.|+||++|+|++++|+|||+|+++++.+++.+++|+|+++++++.+++++++++++.+++    ...+
T Consensus         1 ~~~~~aiIlA~G~s~R~~~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~   80 (229)
T 1qwj_A            1 PPHLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSST   80 (229)
T ss_dssp             CCCEEEEEECCSCCSSSSCTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCGGGSSTTCC
T ss_pred             CCcEEEEEEcCCCCCCCCCcccceECCEEHHHHHHHHHHhCCCcCEEEEECChHHHHHHHHHcCCEEEeChhhhcCCCCc
Confidence            368899999999999999999999999999999999999886679999999988888888888998877653    2345


Q ss_pred             ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEe
Q 028260          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTA  174 (211)
Q Consensus       123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~  174 (211)
                      ++.++..|++.+. +.|++++++||+||+++++++.+++.+.+ ..+.++++.
T Consensus        81 ~~~~v~~al~~~~-~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~  132 (229)
T 1qwj_A           81 SLDAIVEFLNYHN-EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVV  132 (229)
T ss_dssp             HHHHHHHHHTTCT-TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEE
T ss_pred             HHHHHHHHHHhcC-CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence            5678888988873 46899999999999999999999998864 346565554

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=99.88  E-value=4.8e-22  Score=166.37  Aligned_cols=152  Identities=17%  Similarity=0.227  Sum_probs=109.0

Q ss_pred             CCcEEEEEecCCCCCCCCC----ccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcCC--eEeeCC
Q 028260           47 RSRVVGIIPARFASSRFEG----KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGA--DVIMTS  117 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~----K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~v--~vi~~~  117 (211)
                      ||++.+||||||.|+||++    |++++++|+|||+|+++++.+++.+++|+|+++++.   +.+.++.++.  .+....
T Consensus         1 M~~~~aIIlAaG~g~Rm~~~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (246)
T 3f1c_A            1 MSLIYAQILAGGKGTRMGNVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIE   80 (246)
T ss_dssp             -CCEEEEEECC-----C-CSSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEEEE
T ss_pred             CCccEEEEECCccccccCCCCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence            5678999999999999974    999999999999999999998866999999998654   3445555432  221111


Q ss_pred             cccCCChHHHHHHHHhhcc-----CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-C---CC----CCCC
Q 028260          118 ESCRNGTERCNEALQKLEK-----KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-L---KP----EDAF  184 (211)
Q Consensus       118 ~~~~g~~~si~~al~~l~~-----~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~---~~----~~~~  184 (211)
                       ...+...++..|++.+..     +.+++++++||+||+++++++++++.+.++...+.++++++ +   +.    ..+.
T Consensus        81 -~~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~~~~~~d~i~~~~~~~~v~~~~  159 (246)
T 3f1c_A           81 -GGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALDTIVESSNHEVITDIP  159 (246)
T ss_dssp             -CCSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEEECSSCEEECSSSSBCCBCC
T ss_pred             -CCCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEeccceEEEecCCCeEEEec
Confidence             112446788999998853     36899999999999999999999999977544444554443 1   11    2467


Q ss_pred             CCCCeEEEeCCCccE
Q 028260          185 DPNRVKCVVDNHGYA  199 (211)
Q Consensus       185 d~~~~~~v~~~~~~~  199 (211)
                      +++.+..+|+||.|.
T Consensus       160 ~r~~l~~~qtpq~f~  174 (246)
T 3f1c_A          160 VRDHMYQGQTPQSFN  174 (246)
T ss_dssp             CGGGEEEEEEEEEEE
T ss_pred             ChHHhhhhcCCceeE
Confidence            788899999999775

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=99.86  E-value=7.8e-21  Score=152.31  Aligned_cols=123  Identities=19%  Similarity=0.292  Sum_probs=100.1

Q ss_pred             CcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccCCCh
Q 028260           48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT  124 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~g~~  124 (211)
                      |++.+||||||.|+||+ +|++++++|+|||+|+++++..++ +++|+|++++  +++.+++..+++.++.++....|+.
T Consensus         4 ~~~~~iIlA~G~~~R~g~~K~l~~~~g~pli~~~l~~l~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   82 (199)
T 2waw_A            4 SRVTGVVLAAGYSRRLGTPKQLLPLGDTTLLGATLAMARRCP-FDQLIVTLGGAADEVLEKVELDGLDIVLVDDAGLGCS   82 (199)
T ss_dssp             CCEEEEEEESSCCTTTTSCGGGCEETTEEHHHHHHHHHHTSS-CSEEEEEECTTHHHHHHHSCCTTSEEEECCCCCTTCC
T ss_pred             CceEEEEECCCCCCCCCCCEEeCEeCccCHHHHHHHHHHhCC-CCcEEEEeCCCHHHHHHHhccCCCEEEECCCcccCHH
Confidence            56899999999999995 799999999999999999999885 8999999874  4555555556777766554445667


Q ss_pred             HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      .++..|++.+..+.+++++++||+||++++.++.+++. ....+.+++
T Consensus        83 ~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~-~~~~~~~~~  129 (199)
T 2waw_A           83 SSLKSALTWVDPTAEGIVLMLGDQPGITASAVASLIAG-GRGATIAVC  129 (199)
T ss_dssp             CHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHH-HTTCSEEEE
T ss_pred             HHHHHHHHhhhccCCeEEEEeCCcccCCHHHHHHHHhh-cCCCCEEEE
Confidence            88999999874236899999999999999999999988 544454443

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=99.84  E-value=1.3e-20  Score=150.87  Aligned_cols=122  Identities=18%  Similarity=0.327  Sum_probs=97.0

Q ss_pred             CcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccCCCh
Q 028260           48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT  124 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~g~~  124 (211)
                      |++.+||||||.|+||+ +|++++++|+|||+|+++++.+++ +++|+|++++  +++.+++..++++++.++....|..
T Consensus         4 ~~~~~iIlA~G~~~R~g~~K~l~~~~g~pll~~~l~~l~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   82 (197)
T 2wee_A            4 TQITGVVLAAGRSNRLGTPKQLLPYRDTTVLGATLDVARQAG-FDQLILTLGGAASAVRAAMALDGTDVVVVEDVERGCA   82 (197)
T ss_dssp             SEEEEEEEECCCCTTTSSCGGGSEETTEEHHHHHHHHHHHTT-CSEEEEEECTTHHHHHHHSCCTTSEEEECC----CCH
T ss_pred             CceEEEEECCCCcccCCCCeEcCeeCCccHHHHHHHHHHhcC-CCcEEEEeCCCHHHHHHHhccCCCEEEECCCcccCHH
Confidence            67889999999999995 699999999999999999999874 8999999874  4555555456777776654445778


Q ss_pred             HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEE
Q 028260          125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF  171 (211)
Q Consensus       125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv  171 (211)
                      .++..|++.+..+.+++++++||+||++++.++.+++. ....+.++
T Consensus        83 ~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~-~~~~~i~~  128 (197)
T 2wee_A           83 ASLRVALARVHPRATGIVLMLGDQPQVAPATLRRIIDV-GPATEIMV  128 (197)
T ss_dssp             HHHHHHHTTSCTTEEEEEEEETTCTTCCHHHHHHHHHH-GGGSSEEE
T ss_pred             HHHHHHHHHhcccCCeEEEEeCCcCCCCHHHHHHHHhh-cCCCCEEE
Confidence            89999998873235789999999999999999999988 54444443

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=99.82  E-value=6.6e-20  Score=150.53  Aligned_cols=119  Identities=19%  Similarity=0.259  Sum_probs=89.6

Q ss_pred             CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH--HHH-HHHHcCCeEeeCCccc
Q 028260           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK--IAE-CCQQFGADVIMTSESC  120 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~--i~~-~~~~~~v~vi~~~~~~  120 (211)
                      ||++.+||||||.|+||+   +|+|++++|+|||+|+++++.+++++++|+|+++++.  +.+ +...++.++.+.. ..
T Consensus         2 ~~~~~aiIlAaG~g~R~~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~v~~~~-~~   80 (228)
T 2yc3_A            2 EKSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAI-PG   80 (228)
T ss_dssp             TTCEEEEEECCCCC-------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTTSSSEEEEEC-CC
T ss_pred             CcceEEEEECCccccccCCCCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHhCCCcEEEEC-CC
Confidence            457889999999999998   7999999999999999999998767899999998643  322 2223333442211 12


Q ss_pred             CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028260          121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (211)
Q Consensus       121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (211)
                      .+...++..|++.+..+.+.++++++|+||+++++++.+++.+.++
T Consensus        81 ~~~~~sv~~al~~~~~~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~  126 (228)
T 2yc3_A           81 KERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAV  126 (228)
T ss_dssp             SSHHHHHHHHHTTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccCCCEEEEecCCCccCCHHHHHHHHHHHHhc
Confidence            4666889999988753468999999999999999999999988653

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=99.82  E-value=2.7e-20  Score=150.76  Aligned_cols=118  Identities=20%  Similarity=0.209  Sum_probs=92.0

Q ss_pred             CcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccCCCh
Q 028260           48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT  124 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~g~~  124 (211)
                      |++.+||||||.|+||+ +|+|++++|+|||+|+++++...    +++|++++  +.+.+++. .++ ++.++....|+.
T Consensus         1 M~~~~iIlAgG~g~Rmg~~K~l~~i~g~pll~~~l~~l~~~----~ivvv~~~~~~~~~~~~~-~~~-~v~~~~~~~G~~   74 (197)
T 3d5n_A            1 MNIGVIILAAGEGKRFGGDKLLAKIDNTPIIMRTIRIYGDL----EKIIIVGKYVNEMLPLLM-DQI-VIYNPFWNEGIS   74 (197)
T ss_dssp             CCEEEEEECSCCTTCCCSSGGGSBSSSSBHHHHHHHHTTTS----BCCEEECTTHHHHGGGCT-TSC-EEECTTGGGCHH
T ss_pred             CceEEEEECCcCcccCCCCeeeCEeCceEHHHHHHHHHHhC----CEEEEECCCHHHHHHHhc-CCE-EEECCCCCCCHH
Confidence            56889999999999998 79999999999999999999764    66777654  34443333 456 665554445778


Q ss_pred             HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      .++..|++.+. +.+++++++||+||++++.++.+++.+....+.+++
T Consensus        75 ~si~~al~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~  121 (197)
T 3d5n_A           75 TSLKLGLRFFK-DYDAVLVALGDMPFVTKEDVNKIINTFKPNCKAVIP  121 (197)
T ss_dssp             HHHHHHHHHTT-TSSEEEEEETTCCCSCHHHHHHHHHTCCTTCSEEEE
T ss_pred             HHHHHHHHhhc-cCCcEEEEeCCccccCHHHHHHHHHHhcCCCcEEEE
Confidence            89999999884 247999999999999999999999887323344444

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=99.82  E-value=1.1e-19  Score=147.88  Aligned_cols=119  Identities=20%  Similarity=0.250  Sum_probs=96.1

Q ss_pred             CCcEEEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCccc-CCC
Q 028260           47 RSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESC-RNG  123 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~-~g~  123 (211)
                      ||++.+||||||.|+||+  +|++++++|+|||+|+++++..  .+++|+|+++.+. ..+ ..+++.++.++.+. .|.
T Consensus         4 mm~~~~iILAgG~s~Rmg~~~K~ll~i~G~pli~~~l~~l~~--~~~~ivvv~~~~~-~~~-~~~~~~~v~~~~~~~~G~   79 (201)
T 1e5k_A            4 MTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMT--QLSHVVVNANRHQ-EIY-QASGLKVIEDSLADYPGP   79 (201)
T ss_dssp             CCSEEEEEECCCCCSSSCSSCGGGSEETTEEHHHHHHHHHHH--HCSCEEEECSSSH-HHH-HTTSCCEECCCTTCCCSH
T ss_pred             CCcceEEEEcCCCCCcCCCCCCceeeECceeHHHHHHHHHHh--hCCEEEEEcCCcH-HHH-hhcCCeEEecCCCCCCCH
Confidence            678999999999999997  6999999999999999999985  4899999997654 223 34677776554332 466


Q ss_pred             hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      ..++..|++.+  +.+++++++||+||++++.++.+++. ....+.+++
T Consensus        80 ~~si~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~-~~~~~~~~~  125 (201)
T 1e5k_A           80 LAGMLSVMQQE--AGEWFLFCPCDTPYIPPDLAARLNHQ-RKDAPVVWV  125 (201)
T ss_dssp             HHHHHHHHHHC--CSSEEEEEETTCTTCCTTHHHHHHHT-CTTCSEEEE
T ss_pred             HHHHHHHHHhC--CCCcEEEEeCCcCcCCHHHHHHHHhh-cCCCCEEEE
Confidence            78999999988  36899999999999999999999987 444444443

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=99.82  E-value=3.5e-19  Score=145.38  Aligned_cols=122  Identities=25%  Similarity=0.363  Sum_probs=93.4

Q ss_pred             CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc-CCeEeeCCcccCCC
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSESCRNG  123 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~-~v~vi~~~~~~~g~  123 (211)
                      |++.+||||||.|+||+   +|++++++|+|||+|+++++.+++.+++|+|+++++....+.+.. +..+.+..+ ..+.
T Consensus         1 m~~~~vIlA~G~g~R~~~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~v~~~~~-~~~~   79 (223)
T 2xwl_A            1 MATVAVVPAAGSGERLRAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFGGEDSVIVSG-GVDR   79 (223)
T ss_dssp             -CEEEEEECCCCCGGGTSSSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTCBTTEEEEEC-CSSH
T ss_pred             CceEEEEECCccCcccCCCCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhccCCeEEEcC-CCCH
Confidence            57889999999999998   799999999999999999999875689999999876533333322 222312111 2345


Q ss_pred             hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHH-HhCCCeEEE
Q 028260          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL-QAAPDAVFS  172 (211)
Q Consensus       124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~-~~~~d~vv~  172 (211)
                      ..++..|++.+. +.+.+++++||+||++++.++.+++.+ .+ .+.++.
T Consensus        80 ~~~i~~al~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~-~~~~i~  127 (223)
T 2xwl_A           80 TESVALALEAAG-DAEFVLVHDAARALTPPALIARVVAALKEG-HSAVVP  127 (223)
T ss_dssp             HHHHHHHHTTCT-TCSEEEECCTTCTTCCHHHHHHHHHHHHHT-CSEEEE
T ss_pred             HHHHHHHHHhcC-CCCEEEEEcCCcccCCHHHHHHHHHHHhhc-CCeEEE
Confidence            678889998873 467899999999999999999999988 44 455543

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=99.82  E-value=2.6e-19  Score=146.98  Aligned_cols=115  Identities=18%  Similarity=0.216  Sum_probs=94.8

Q ss_pred             EEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc-HHHHHHHHHcCCeEeeCCcccCCChHHHH
Q 028260           51 VGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD-EKIAECCQQFGADVIMTSESCRNGTERCN  128 (211)
Q Consensus        51 ~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~-e~i~~~~~~~~v~vi~~~~~~~g~~~si~  128 (211)
                      .+||||||.|+||| +|++++++|+|||+|+++++...    +|+|++++ +.+..+.+.++++++.++....|+..++.
T Consensus         2 ~aiILAgG~s~Rmg~~K~ll~~~G~pli~~~~~~l~~~----~vvvv~~~~~~~~~~~~~~~~~~v~d~~~~~G~~~si~   77 (208)
T 3ngw_A            2 KVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPF----QTVFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIH   77 (208)
T ss_dssp             EEEEECCCCCTTTTSCGGGCEETTEEHHHHHHHHHTTS----EEEEECSSHHHHHHHHTTSCSCEECCTTCCCSHHHHHH
T ss_pred             EEEEECCCchhhCCCCCcccEECCeeHHHHHHHHhcCC----CEEEEECCHHHHHHHHHhcCCeEEecCCCCCChHHHHH
Confidence            58999999999997 69999999999999999999864    88888875 44454544478887765544456778999


Q ss_pred             HHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEE
Q 028260          129 EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFST  173 (211)
Q Consensus       129 ~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v  173 (211)
                      .|++.+   .+++ +++||+||+++++++.+++.+.+ ..+.+++.
T Consensus        78 ~gl~~~---~~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~  119 (208)
T 3ngw_A           78 AALRHF---GSCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALIPK  119 (208)
T ss_dssp             HHHHHH---SSEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHc---CCCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEEEc
Confidence            999988   5788 99999999999999999998863 56666654

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=99.81  E-value=3e-19  Score=146.68  Aligned_cols=118  Identities=17%  Similarity=0.177  Sum_probs=86.6

Q ss_pred             CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCC-eEeeCCcccC
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGA-DVIMTSESCR  121 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v-~vi~~~~~~~  121 (211)
                      |++.+||||||.|+||+   +|+|++++|+|||+|+++++.+++.+++|+|+++  .+.+.+ +.+++. .+.+.+ ...
T Consensus         5 ~~~~aiIlA~G~g~R~~~~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~~~i~~~~-~~~   82 (231)
T 1vgw_A            5 RKNIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAFPQVRVWKN-GGQ   82 (231)
T ss_dssp             CCEEEEEECC----------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHCTTSEEECC-CCS
T ss_pred             CceEEEEEcccccccCCCCCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcCCCceEEEc-CCC
Confidence            56889999999999997   6999999999999999999998766999999995  345555 444432 222222 233


Q ss_pred             CChHHHHHHHHhhcc-----CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCC
Q 028260          122 NGTERCNEALQKLEK-----KYDIVVNIQGDEPLIEPEIIDGVVKALQAAP  167 (211)
Q Consensus       122 g~~~si~~al~~l~~-----~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~  167 (211)
                      +...++..|++.+..     +.+.+++++||+||++++.++.+++.+.++.
T Consensus        83 ~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~  133 (231)
T 1vgw_A           83 TRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAA  133 (231)
T ss_dssp             SHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCT
T ss_pred             cHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcC
Confidence            556788889887742     3689999999999999999999999886543

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=99.80  E-value=1.1e-19  Score=150.26  Aligned_cols=118  Identities=10%  Similarity=0.168  Sum_probs=93.3

Q ss_pred             CCCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCC-eE-eeCCc
Q 028260           46 FRSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGA-DV-IMTSE  118 (211)
Q Consensus        46 ~~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v-~v-i~~~~  118 (211)
                      .+|++.+||||||.|+||+   +|+|++++|+|||+|+++++.+++.+++|+|++++  +.+.+ +..++. .+ +..+ 
T Consensus         4 ~~~~~~~iIlA~G~g~R~~~~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~~~v~~~~~-   81 (236)
T 1i52_A            4 THLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPLANHPQITVVDG-   81 (236)
T ss_dssp             -CCCEEEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGGGGCTTEEEEEC-
T ss_pred             CCCceeEEEECCcCccccCCCCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHhcCCCCEEEECC-
Confidence            3678999999999999998   79999999999999999999987668999999874  34444 333332 22 2222 


Q ss_pred             ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCC
Q 028260          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP  167 (211)
Q Consensus       119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~  167 (211)
                       ..|...++..|++.+. +.+++++++||+||++++.++.+++.+.++.
T Consensus        82 -~~g~~~~i~~al~~~~-~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~  128 (236)
T 1i52_A           82 -GDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSR  128 (236)
T ss_dssp             -CSSHHHHHHHHHHTST-TCSEEEECCTTCTTCCHHHHHHHHGGGGTCS
T ss_pred             -CCCHHHHHHHHHHhcC-CCCEEEEEcCccccCCHHHHHHHHHHHHhcC
Confidence             2356678999999873 3689999999999999999999999886543

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=99.80  E-value=4.5e-19  Score=145.74  Aligned_cols=117  Identities=15%  Similarity=0.200  Sum_probs=85.5

Q ss_pred             EEEEEecCCCCCCCCC----ccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcCCeEeeCCcc---
Q 028260           50 VVGIIPARFASSRFEG----KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSES---  119 (211)
Q Consensus        50 i~aIIlA~G~ssRlg~----K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~v~vi~~~~~---  119 (211)
                      +.+||||||.|+||++    |+|++++|+|||+|+++++.+++.+++|+|+++++.   +.++++++++.+......   
T Consensus         3 ~~~iIlA~G~g~R~~~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (236)
T 2vsh_A            3 IYAGILAGGTGTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITKG   82 (236)
T ss_dssp             EEEEEEEC-----------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEEEEC
T ss_pred             eEEEEeCCccccccCCCCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEEECC
Confidence            5799999999999975    999999999999999999998766999999998644   666666666322111111   


Q ss_pred             cCCChHHHHHHHHhhc---c--CCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028260          120 CRNGTERCNEALQKLE---K--KYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (211)
Q Consensus       120 ~~g~~~si~~al~~l~---~--~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (211)
                      ..|...++..|++.+.   .  +.+++++++||+||++++.++.+++.+.++
T Consensus        83 ~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~  134 (236)
T 2vsh_A           83 GADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNH  134 (236)
T ss_dssp             CSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHS
T ss_pred             CCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhc
Confidence            1345678888988874   2  347999999999999999999999998654

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=99.80  E-value=5.1e-19  Score=145.74  Aligned_cols=113  Identities=17%  Similarity=0.204  Sum_probs=87.5

Q ss_pred             EEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc--CCeEeeCCcccCC--
Q 028260           50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF--GADVIMTSESCRN--  122 (211)
Q Consensus        50 i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~--~v~vi~~~~~~~g--  122 (211)
                      +.+||||||.|+||+   +|+|++++|+|||+|+++++.+++.+++|+|+++++....+.+..  +..+.    ...|  
T Consensus        14 ~~aiILAaG~s~Rm~~~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~----~~~gg~   89 (234)
T 1vpa_A           14 NVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLG----IVEGGD   89 (234)
T ss_dssp             EEEEEEECCCCGGGCCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCCCTTEEE----EEECCS
T ss_pred             CeEEEEcCcchhhcCCCCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhccCCceE----EeCCCC
Confidence            569999999999998   799999999999999999999886689999999865432211111  11211    1223  


Q ss_pred             -ChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028260          123 -GTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (211)
Q Consensus       123 -~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (211)
                       ...++..|++.+.. +.+++++++||+||+++++++.+++.+.++
T Consensus        90 ~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~  135 (234)
T 1vpa_A           90 TRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARET  135 (234)
T ss_dssp             SHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhc
Confidence             34678889988743 357899999999999999999999988643

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=99.79  E-value=2.9e-19  Score=145.15  Aligned_cols=112  Identities=23%  Similarity=0.265  Sum_probs=92.6

Q ss_pred             ccCCCCCCcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc-CCeEeeCCc
Q 028260           41 GRSKNFRSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSE  118 (211)
Q Consensus        41 ~~~~~~~m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~-~v~vi~~~~  118 (211)
                      .|....+|++.+||||||.|+||+ +|++++++|+|||+|+++++...  +++|+|+++++..    +.+ +++++.++.
T Consensus         6 ~~~~~~~~~~~~iILA~G~g~Rmg~~K~ll~i~g~pll~~~l~~l~~~--~~~i~vv~~~~~~----~~~~~~~~v~~~~   79 (201)
T 2e8b_A            6 WRKGSLSKVNTCYVLAGGKSKRFGEDKLLYEIKGKKVIERVYETAKSV--FKEVYIVAKDREK----FSFLNAPVVLDEF   79 (201)
T ss_dssp             SSTTTSCSCCEEEEEEESSCCCCSTTHHHHHHHHHHHHHHHHHHHHTT--CSEEEEEESCSGG----GGGGTCCEEECCC
T ss_pred             cccCCcccCceEEEECCCCCccCCCCcccceECceEHHHHHHHHHHHh--CCEEEEEeCcHHH----hhcCCceEEecCC
Confidence            344444557889999999999998 79999999999999999999876  8999999976543    223 677766554


Q ss_pred             ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHH-HH
Q 028260          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG-VV  160 (211)
Q Consensus       119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~-li  160 (211)
                      ...|+..++..|++.+.  .+++++++||+||++++.++. ++
T Consensus        80 ~~~g~~~~i~~al~~~~--~~~~lv~~~D~P~i~~~~i~~~l~  120 (201)
T 2e8b_A           80 EESASIIGLYTALKHAK--EENVFVLSGDLPLMKKETVLYVLE  120 (201)
T ss_dssp             SSCCHHHHHHHHHHHCS--SSEEEEEETTCTTCCHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHcC--CCCEEEEeCCcCcCCHHHHHHHHh
Confidence            45577789999999873  689999999999999999999 87

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.78  E-value=1.4e-18  Score=156.22  Aligned_cols=147  Identities=16%  Similarity=0.180  Sum_probs=107.1

Q ss_pred             CcEEEEEecCCCCCCCCC---ccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCC
Q 028260           48 SRVVGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRN  122 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~---K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g  122 (211)
                      |++.+||||||.|+||++   |+|++++|+|||+|+++++.+++ +++|+|+++  .+++.+++...++.++..+ ...|
T Consensus         7 ~~~~aiIlA~G~g~Rl~~~~pK~l~~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~~~~i~~~~~~~~~~~v~~~-~~~g   84 (459)
T 4fce_A            7 SSMSVVILAAGKGTRMYSDLPKVLHPLAGKPMVQHVIDAAMKLG-AQHVHLVYGHGGELLKKTLADPSLNWVLQA-EQLG   84 (459)
T ss_dssp             CCEEEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHHHT-CSCEEEEESSCHHHHHHHC-----CEEECS-SCCC
T ss_pred             CcceEEEECCCCCccCCCCCCcccCeeCCeeHHHHHHHHHHhCC-CCcEEEEeCCCHHHHHHHhccCCcEEEeCC-CCCC
Confidence            578999999999999974   99999999999999999999985 999999995  3666666666667766543 3456


Q ss_pred             ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEee
Q 028260          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF  202 (211)
Q Consensus       123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~  202 (211)
                      ...+++.+++.+. +.+++++++||+||++++.++++++.+.+ .+.++...  +...  +.  ..-++..+ +|++..|
T Consensus        85 ~~~~i~~~~~~~~-~~~~~lv~~~D~P~i~~~~i~~l~~~~~~-~~~~~~~~--~~~~--~~--~~g~v~~~-~g~v~~~  155 (459)
T 4fce_A           85 TGHAMQQAAPHFA-DDEDILMLYGDVPLISVDTLQRLLAAKPE-GGIGLLTV--KLDN--PS--GYGRIVRE-NGDVVGI  155 (459)
T ss_dssp             HHHHHHHHGGGSC-TTSEEEEEETTCTTCCHHHHHHHHHHCCT-TSEEEEEE--ECSC--CT--TSCEEEEE-TTEEEEE
T ss_pred             cHHHHHHHHHhcC-CCCcEEEEeCCcccCCHHHHHHHHHHHhh-CCEEEEEE--ecCC--CC--cccEEEeC-CCcEEEE
Confidence            6788999999885 35899999999999999999999998865 34433322  2111  11  12233334 6777777


Q ss_pred             ecC
Q 028260          203 SRG  205 (211)
Q Consensus       203 ~~~  205 (211)
                      .++
T Consensus       156 ~ek  158 (459)
T 4fce_A          156 VEH  158 (459)
T ss_dssp             ECG
T ss_pred             EEC
Confidence            654

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=99.77  E-value=6.8e-19  Score=156.23  Aligned_cols=144  Identities=16%  Similarity=0.214  Sum_probs=104.1

Q ss_pred             CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc-HHHHHHHHHcCCeEeeCCcccCC
Q 028260           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD-EKIAECCQQFGADVIMTSESCRN  122 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~-e~i~~~~~~~~v~vi~~~~~~~g  122 (211)
                      ||++.+||||||.|+||+   +|+|++++|+|||+|+++++.++..+++|+|++++ +.+.+++.  +++++.   ...+
T Consensus         1 Mmki~aIILAaG~ssRmg~~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~~~~~i~~~~~--~v~~v~---~g~g   75 (371)
T 1w55_A            1 MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKKFTK--NYEFIE---GGDT   75 (371)
T ss_dssp             -CCEEEEEECCSCCTTTCSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESCHHHHHTTCS--SSEEEE---CCSS
T ss_pred             CCccEEEEECCCCCccCCCCCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcCCHHHHHHHhC--CCEEEe---CCCC
Confidence            578999999999999997   69999999999999999999986679999999983 22222221  244442   1234


Q ss_pred             ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEe-eee-CCC-CCCCCCCCeEEEeCCCcc
Q 028260          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA-VTS-LKP-EDAFDPNRVKCVVDNHGY  198 (211)
Q Consensus       123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~-~~~-~~~-~~~~d~~~~~~v~~~~~~  198 (211)
                      ...++..|++.+.  .+++++++||+||++++.++++++.+.++ +..+++. ..+ +.. ..+.+++.+..+++|+.|
T Consensus        76 ~~~sv~~aL~~l~--~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~a~i~~~~~~d~vk~v~~t~~r~~l~~~~~P~~f  151 (371)
T 1w55_A           76 RAESLKKALELID--SEFVMVSDVARVLVSKNLFDRLIENLDKA-DCITPALKVADTTLFDNEALQREKIKLIQTPQIS  151 (371)
T ss_dssp             HHHHHHHHHTTCC--SSEEEEEETTCTTCCHHHHHHHHTTGGGC-SEEEEEECCCSCEEETTEEECGGGCCEECSCEEE
T ss_pred             hHHHHHHHHHhcC--CCeEEEEeCCcccCCHHHHHHHHHHHHhc-CCEEEEEEeecCeeeeeeecCccceeecCCccee
Confidence            5678999998873  68999999999999999999999988654 4444322 221 000 123455566667777754

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=99.77  E-value=2.5e-19  Score=144.00  Aligned_cols=109  Identities=21%  Similarity=0.270  Sum_probs=81.5

Q ss_pred             EEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH-c----CCeEeeCCcccC
Q 028260           51 VGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-F----GADVIMTSESCR  121 (211)
Q Consensus        51 ~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~-~----~v~vi~~~~~~~  121 (211)
                      .+||||||.|+||+  +|++++++|+|||+|+++++.+++ +++|+|+++  .+++.+++.. +    ++.++..  ...
T Consensus         2 ~aiIlA~G~s~R~~~~~K~l~~~~g~pli~~~l~~l~~~~-~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~   78 (196)
T 3rsb_A            2 DALIMAGGKGTRMGGVEKPLIKLCGRCLIDYVVSPLLKSK-VNNIFIATSPNTPKTKEYINSAYKDYKNIVVIDT--SGK   78 (196)
T ss_dssp             EEEEEC----CGGGGSCGGGCEETTEEHHHHHHHHHHSSS-CCCEEEECCTTCHHHHHHHHHHTTTTTEEEE--------
T ss_pred             EEEEECCCCCCcCCCCCccEEEECCEEHHHHHHHHHHHCC-CCEEEEEeCCChHHHHHHHHhhccCCCCEEEEEC--CCC
Confidence            58999999999998  499999999999999999999986 999999995  4666776655 3    2333322  233


Q ss_pred             CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028260          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (211)
Q Consensus       122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (211)
                      |...++..|++.+   .+++++++||+||++++.++++++.+.+
T Consensus        79 g~~~si~~al~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~  119 (196)
T 3rsb_A           79 GYIEDLNECIGYF---SEPFLVVSSDLINLKSKIINSIVDYFYC  119 (196)
T ss_dssp             --CCCCCTTTTTC---SSCEEEEETTEESCCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhC---CCCEEEEeCCcccCCHHHHHHHHHHHHh
Confidence            4455677777766   5789999999999999999999999864

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.76  E-value=6.6e-18  Score=151.58  Aligned_cols=148  Identities=15%  Similarity=0.224  Sum_probs=108.2

Q ss_pred             CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccC
Q 028260           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCR  121 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~  121 (211)
                      +|++.+||||||.|+||+   +|+|++++|+|||+|+++++.+++ +++++|++++  +++.+++.+++++++..+ ...
T Consensus         3 ~~~~~aiIlA~G~g~Rl~~~~pK~l~~i~gkpli~~~l~~l~~~~-~~~iivv~~~~~~~i~~~~~~~~~~~v~~~-~~~   80 (456)
T 2v0h_A            3 KKALSAVILAAGKGTRMYSDLPKVLHTIAGKPMVKHVIDTAHQLG-SENIHLIYGHGGDLMRTHLANEQVNWVLQT-EQL   80 (456)
T ss_dssp             -CCEEEEEECCCCCGGGCSSSCGGGSEETTEEHHHHHHHHHHHTT-CSCEEEEECTTHHHHHHHTTTCCCEEEECS-CCC
T ss_pred             CCcceEEEECCCCCcccCCCCCccccEECCccHHHHHHHHHHhCC-CCcEEEEeCCCHHHHHHHhhcCCcEEEeCC-CCC
Confidence            467899999999999997   599999999999999999999884 9999999975  555555555466665543 344


Q ss_pred             CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEe
Q 028260          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY  201 (211)
Q Consensus       122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~  201 (211)
                      |...++..+++.+. +.+++++++||+||++++.++++++.+.+ .+.++..  .+...  +.  ..-++..+ +|++..
T Consensus        81 g~~~~~~~~~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~-~~~~~~~--~~~~~--~~--~~g~v~~~-~g~v~~  151 (456)
T 2v0h_A           81 GTAHAVQQAAPFFK-DNENIVVLYGDAPLITKETLEKLIEAKPE-NGIALLT--VNLDN--PT--GYGRIIRE-NGNVVA  151 (456)
T ss_dssp             CHHHHHHHHGGGCC-TTSEEEEEETTCTTCCHHHHHHHHHHCCT-TSEEEEE--EECSS--CT--TSCEEEEE-TTEEEE
T ss_pred             CcHHHHHHHHHhcC-CCCeEEEEcCCcceeCHHHHHHHHHHHhc-CCEEEEE--eecCC--CC--ccceEEEc-CCcEEE
Confidence            66678888888874 26899999999999999999999998765 4444332  22211  11  12233344 666666


Q ss_pred             eecC
Q 028260          202 FSRG  205 (211)
Q Consensus       202 ~~~~  205 (211)
                      |.++
T Consensus       152 ~~ek  155 (456)
T 2v0h_A          152 IVEQ  155 (456)
T ss_dssp             EECT
T ss_pred             EEEC
Confidence            6654

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=99.76  E-value=1e-17  Score=143.95  Aligned_cols=148  Identities=18%  Similarity=0.215  Sum_probs=107.0

Q ss_pred             CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEc-C--cHHHHHHHHH---cCCeEee
Q 028260           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVAT-D--DEKIAECCQQ---FGADVIM  115 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt-~--~e~i~~~~~~---~~v~vi~  115 (211)
                      |++.+||||||.|+||+      +|+|++++|+|||+|+++++..++ +++|+|++ +  .+.+.+++.+   +++++.+
T Consensus         1 M~~~aIILAgG~gtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~g-i~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~   79 (293)
T 1fxo_A            1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAG-IREILIISTPQDTPRFQQLLGDGSNWGLDLQY   79 (293)
T ss_dssp             -CEEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEE
T ss_pred             CCceEEEECCCCCCcCccccCCCCceeCeECCEeHHHHHHHHHHHCC-CCEEEEEeccccHHHHHHHHhcccccCceEEE
Confidence            56789999999999997      799999999999999999999884 99998766 3  3556666654   6766532


Q ss_pred             -CCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCe-EEE
Q 028260          116 -TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCV  192 (211)
Q Consensus       116 -~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~-~~v  192 (211)
                       ..+...|...++..+++.+.  .+.++++.||+||.+ ..+.++++.+.+ ..++++..  .++     .|++.+ .+.
T Consensus        80 ~~~~~~~G~~~al~~a~~~i~--~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v~~--~~v-----~dp~~~g~v~  149 (293)
T 1fxo_A           80 AVQPSPDGLAQAFLIGESFIG--NDLSALVLGDNLYYG-HDFHELLGSASQRQTGASVFA--YHV-----LDPERYGVVE  149 (293)
T ss_dssp             EECSSCCCGGGHHHHTHHHHT--TSEEEEEETTEEEEC-TTHHHHHHHHHTCCSSEEEEE--EEC-----SCGGGSEEEE
T ss_pred             eeCCCCCCHHHHHHHHHHHhC--CCCEEEEECChhccC-ccHHHHHHHHHhcCCCcEEEE--EEC-----CCcccCcEEE
Confidence             22233455678888888874  467777779999988 588999988743 34444322  221     233333 455


Q ss_pred             eCCCccEEeeecCC
Q 028260          193 VDNHGYAIYFSRGL  206 (211)
Q Consensus       193 ~~~~~~~~~~~~~~  206 (211)
                      .|.+|++..|.+++
T Consensus       150 ~d~~g~v~~~~ekp  163 (293)
T 1fxo_A          150 FDQGGKAISLEEKP  163 (293)
T ss_dssp             ECTTSCEEEEEESC
T ss_pred             ECCCCcEEEEEECC
Confidence            68888999888765

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=99.75  E-value=2.2e-18  Score=143.21  Aligned_cols=113  Identities=17%  Similarity=0.222  Sum_probs=83.6

Q ss_pred             CcEEEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChH
Q 028260           48 SRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTE  125 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~  125 (211)
                      |++.+||||||.|+||+  +|+|++++|+|||+|++++  . ..+++|+|++++ ++.+ +...++.++..   ..+...
T Consensus        24 M~~~aiILAgG~s~Rm~~~~K~l~~i~gkpli~~~l~~--~-~~~~~ivvv~~~-~~~~-~~~~~v~~~~~---~~~~~~   95 (236)
T 2px7_A           24 MEVSVLIPAAGNGLRLGRGPKAFLQVGGRTLLEWTLAA--F-RDAAEVLVALPP-GAEP-PKGLGAVFLEG---GATRQA   95 (236)
T ss_dssp             CCCEEEEECCC-------CCGGGCBCSSSBHHHHHHHH--T-TTCSEEEEEECT-TCCC-CTTCSCEEEEC---CSSHHH
T ss_pred             CceEEEEEcCCCCccCCCCCCeEEEECCEEHHHHHHHh--c-CCCCeEEEEeCH-HHHH-hhcCCcEEEeC---CCchHH
Confidence            77889999999999998  8999999999999999999  3 468999999986 3333 22234443321   234567


Q ss_pred             HHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEE
Q 028260          126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF  171 (211)
Q Consensus       126 si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv  171 (211)
                      ++..|++.+.  .+++++++||+||++++.++.+++.+.+. +..+
T Consensus        96 ~i~~al~~~~--~~~vlv~~~D~P~~~~~~i~~l~~~~~~~-~~~i  138 (236)
T 2px7_A           96 SVARLLEAAS--LPLVLVHDVARPFVSRGLVARVLEAAQRS-GAAV  138 (236)
T ss_dssp             HHHHHHHHCC--SSEEEECCTTCCCCCHHHHHHHHHHHHHH-SEEE
T ss_pred             HHHHHHHHcC--CCeEEEecCccccCCHHHHHHHHHHHHhc-CCeE
Confidence            8899999873  68999999999999999999999988653 4433

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.75  E-value=1.9e-17  Score=149.31  Aligned_cols=148  Identities=16%  Similarity=0.150  Sum_probs=110.2

Q ss_pred             cEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccCCC
Q 028260           49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNG  123 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~g~  123 (211)
                      .-.+||||||.|+||+   +|+|++++|+|||+|+++++.++ ++++|+|+++.  +++.+++.+ ++.++..+ ...|.
T Consensus        11 ~~~~vIlAaG~g~R~~~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iivv~~~~~~~i~~~~~~-~i~~v~~~-~~~G~   87 (468)
T 1hm9_A           11 SNFAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAI-QPEKTVTVVGHKAELVEEVLAG-QTEFVTQS-EQLGT   87 (468)
T ss_dssp             CEEEEEECCCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTT-CCSEEEEEECTTHHHHHHSSSS-SSEEEECS-SCCCH
T ss_pred             CCcEEEEcCCCCccCCCCCCcEeeEECCccHHHHHHHHHHhc-CCCCEEEEECCCHHHHHHHhCC-CcEEEeCC-ccCCh
Confidence            4569999999999996   49999999999999999999988 59999999965  444433322 55655533 34566


Q ss_pred             hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCCCCCCCCC-CeEEEeCCCccEEe
Q 028260          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIY  201 (211)
Q Consensus       124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~~~~~d~~-~~~~v~~~~~~~~~  201 (211)
                      ..+++.+++.+....+++++++||+||++++.++++++.+.+. .+.++.  ..+..     ++. .-++..|++|++..
T Consensus        88 ~~sl~~a~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~--~~~~~-----~~~~~g~v~~d~~g~v~~  160 (468)
T 1hm9_A           88 GHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATIL--TAETD-----NPFGYGRIVRNDNAEVLR  160 (468)
T ss_dssp             HHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEE--EEECS-----CCTTSCEEEECTTCCEEE
T ss_pred             HHHHHHHHHHhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEE--EeccC-----CCCceeEEEECCCCCEEE
Confidence            7888889988743368999999999999999999999988643 344433  23321     222 23456678888888


Q ss_pred             eecCC
Q 028260          202 FSRGL  206 (211)
Q Consensus       202 ~~~~~  206 (211)
                      |.+++
T Consensus       161 ~~ek~  165 (468)
T 1hm9_A          161 IVEQK  165 (468)
T ss_dssp             EECTT
T ss_pred             EEECC
Confidence            88764

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=99.73  E-value=7e-17  Score=138.91  Aligned_cols=145  Identities=19%  Similarity=0.172  Sum_probs=104.1

Q ss_pred             EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC---cHHHHHHHHH---cCCeEee-CC
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQ---FGADVIM-TS  117 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~---~e~i~~~~~~---~~v~vi~-~~  117 (211)
                      .+||||||.|+||+      +|+|++++|+|||+|+++++..++ +++|+|++.   .+.+.+++.+   +++++.+ ..
T Consensus         5 ~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~g-i~~Iivv~~~~~~~~i~~~l~~g~~~g~~i~~~~~   83 (295)
T 1lvw_A            5 KGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAG-IRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQ   83 (295)
T ss_dssp             EEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEEC
T ss_pred             EEEEECCCCCCccccccCCCCceecEECCeeHHHHHHHHHHHCC-CCeEEEEeccchHHHHHHHhhhccccCceEEEeeC
Confidence            58999999999997      699999999999999999999884 999998763   3556666643   5666522 22


Q ss_pred             cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCC-CeEEEeCC
Q 028260          118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPN-RVKCVVDN  195 (211)
Q Consensus       118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~-~~~~v~~~  195 (211)
                      +...|...++..+++.+.  .+.++++.+|+||.+ ..+.++++.+.+ ..++++.  ..++     .|++ ...+..|.
T Consensus        84 ~~~~G~~~al~~a~~~i~--~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v~--~~~v-----~dp~~~g~v~~d~  153 (295)
T 1lvw_A           84 EEPRGIADAFIVGKDFIG--DSKVALVLGDNVFYG-HRFSEILRRAASLEDGAVIF--GYYV-----RDPRPFGVVEFDS  153 (295)
T ss_dssp             SSCCCGGGHHHHTHHHHT--TSCEEEEETTCCEEC-TTHHHHHHHHHTCCSSEEEE--EEEC-----SCCTTSEEEEECT
T ss_pred             CCCCChHHHHHHHHHHhC--CCcEEEEECCccccC-cCHHHHHHHHHHcCCCcEEE--EEEC-----CCcccCCEEEECC
Confidence            233456678888888874  345555569999998 588999988743 3344432  2221     2333 34556688


Q ss_pred             CccEEeeecCC
Q 028260          196 HGYAIYFSRGL  206 (211)
Q Consensus       196 ~~~~~~~~~~~  206 (211)
                      +|++..|.+++
T Consensus       154 ~g~v~~~~ekp  164 (295)
T 1lvw_A          154 EGRVISIEEKP  164 (295)
T ss_dssp             TSBEEEEEESC
T ss_pred             CCcEEEEEECC
Confidence            89999998765

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=99.73  E-value=1.3e-17  Score=141.33  Aligned_cols=152  Identities=13%  Similarity=0.068  Sum_probs=107.7

Q ss_pred             CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH-----------
Q 028260           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-----------  108 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~-----------  108 (211)
                      |...+||||||.|+||+      +|+|++++|+|||+|+++.+.++ ++++|+|+++  .+.+.+++..           
T Consensus         1 M~~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~   79 (281)
T 3juk_A            1 MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEA-GCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGT   79 (281)
T ss_dssp             CCCEEEEECCSCCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHH-TCCEEEEEECTTHHHHHHHTSCCC--------C
T ss_pred             CceEEEEECCcCCcccCccccCCCcccceECCEEHHHHHHHHHHhC-CCCEEEEEecCCHHHHHHHHhcchhhhhhhhcc
Confidence            45679999999999996      39999999999999999999998 5999999995  4556655432           


Q ss_pred             -------------cCCeEe-eCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHH----HHHHHHHHHHhCCCeE
Q 028260          109 -------------FGADVI-MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPE----IIDGVVKALQAAPDAV  170 (211)
Q Consensus       109 -------------~~v~vi-~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~----~i~~li~~~~~~~d~v  170 (211)
                                   ++..+. ...+...|...++..|++.+.  .+.++++.||+ +++.+    .++++++.+.+....+
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~--~~~~lv~~~D~-~~~~~~~~~~l~~l~~~~~~~~~~~  156 (281)
T 3juk_A           80 NKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIG--NEPFAVILADD-LCISHDHPSVLKQMTSLYQKYQCSI  156 (281)
T ss_dssp             CHHHHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHC--SSCEEEECTTE-EEECTTSCCHHHHHHHHHHHHCSCE
T ss_pred             cchhhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcC--CCCEEEEeCCe-eccCccchHHHHHHHHHHHHcCCCE
Confidence                         234542 222234466678999998884  57899999999 88887    8999999886433345


Q ss_pred             EEEeeeeCCCCCCCCCCCeEEEeCC--Cc--cEEeeecCCC
Q 028260          171 FSTAVTSLKPEDAFDPNRVKCVVDN--HG--YAIYFSRGLI  207 (211)
Q Consensus       171 v~v~~~~~~~~~~~d~~~~~~v~~~--~~--~~~~~~~~~~  207 (211)
                      +++...+  .+...  ..-.+..++  +|  ++..|.+++.
T Consensus       157 v~~~~~~--~~~~~--~~g~v~~~~~~~g~~~v~~~~Ekp~  193 (281)
T 3juk_A          157 VAIEEVA--LEEVS--KYGVIRGEWLEEGVYEIKDMVEKPN  193 (281)
T ss_dssp             EEEEECC--TTTGG--GSEEEEEEEEETTEEEEEEEEESCC
T ss_pred             EEEEEec--hhhcc--cCCEEEeccCCCCceEEeEEEECcC
Confidence            5544322  11111  122334454  66  7888887764

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=99.72  E-value=3e-17  Score=135.33  Aligned_cols=117  Identities=18%  Similarity=0.196  Sum_probs=80.2

Q ss_pred             hcccCCCCCCcEEEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEc-CcHHHHHH-HHHcC--Ce
Q 028260           39 YLGRSKNFRSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVAT-DDEKIAEC-CQQFG--AD  112 (211)
Q Consensus        39 ~~~~~~~~~m~i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt-~~e~i~~~-~~~~~--v~  112 (211)
                      |....++.|+++.+||||||.|+||+  +|++++++|+|||+|+++++.++  +++|+|++ +.+++.+. .++++  +.
T Consensus         8 ~~~~~~~~m~~~~~iIlA~G~g~R~~~~~K~l~~i~g~pli~~~l~~l~~~--~~~i~vv~~~~~~~~~~~~~~~~~~~~   85 (232)
T 2xme_A            8 YLKIFAGRIKLMKAVILAAGLGTRLGGVPKPLVRVGGCEIILRTMKLLSPH--VSEFIIVASRYADDIDAFLKDKGFNYK   85 (232)
T ss_dssp             --------CCCEEEEEEECC------CCCGGGCEETTEEHHHHHHHHHGGG--EEEEEEEESTTHHHHHHHHTTSCCCEE
T ss_pred             hhhhhhcccccceEEEECCcCcCcCCCCCcEEeEECCEEHHHHHHHHHHHh--CCEEEEEeCChHHHHHHHHHhcCCcEE
Confidence            33444555778999999999999995  69999999999999999999886  88998888 33455444 34444  34


Q ss_pred             EeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHH
Q 028260          113 VIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK  161 (211)
Q Consensus       113 vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~  161 (211)
                      ++.++....|...++..|++.+.   +.++++.||+|+ +++.++.+++
T Consensus        86 ~v~~~~~~~g~~~~i~~a~~~~~---~~~lv~~~D~p~-~~~~~~~l~~  130 (232)
T 2xme_A           86 IVRHDRPEKGNGYSLLVAKNHVE---DRFILTMGDHVY-SQQFIEKAVR  130 (232)
T ss_dssp             EEECSCGGGCHHHHHHTTGGGCC---SSEEEEETTEEE-CHHHHHHHTT
T ss_pred             EEECCCCCCCcHHHHHHHHHHCC---CCEEEEcCCccc-CHHHHHHHHh
Confidence            44444334566788888888873   568899999997 9988888775

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=99.71  E-value=2.4e-16  Score=135.94  Aligned_cols=152  Identities=13%  Similarity=0.131  Sum_probs=100.6

Q ss_pred             CcEEEEEecCCCCCCCC-------Ccccccc-CCeehHHHHHHHHHcCCCCCeEEEEcCcH---HHHHHHHH-cCC-eE-
Q 028260           48 SRVVGIIPARFASSRFE-------GKPLVNI-LGKPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQ-FGA-DV-  113 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg-------~K~ll~l-~GkpLl~~~i~~l~~~~~id~IVVvt~~e---~i~~~~~~-~~v-~v-  113 (211)
                      |++.+||||||.|+||.       +|+|+++ +|+|||+|+++++.++  +++|+|+++.+   .+.+.+.. +++ ++ 
T Consensus         3 ~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~--~~~i~vv~~~~~~~~i~~~~~~~~~~~~~~   80 (308)
T 2qh5_A            3 LKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL--VDETLIVCNEKHYFLALEEIKNEIKNKSVG   80 (308)
T ss_dssp             CCEEEEEECC-------------CCGGGCTTBTTBCHHHHHHHHHHTT--CSEEEEEEEGGGHHHHHHHTTTTCSSCEEE
T ss_pred             CccEEEEEcCCCCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHcc--CCCEEEEEChhHHHHHHHHHHHhhCCCccE
Confidence            56789999999999992       6999999 6999999999999986  89999998753   55566655 555 43 


Q ss_pred             eeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHH---HHhCCCeEEEEeeeeCCCCCCCCCCCeE
Q 028260          114 IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA---LQAAPDAVFSTAVTSLKPEDAFDPNRVK  190 (211)
Q Consensus       114 i~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~---~~~~~d~vv~v~~~~~~~~~~~d~~~~~  190 (211)
                      +..++...|...++..++..+. ..+++++++||+|+++.+.++++++.   +.+. +..+++..++..+.    ...-.
T Consensus        81 ~i~~~~~~gt~~al~~a~~~l~-~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~----~~~g~  154 (308)
T 2qh5_A           81 FLLESLSKNTANAIALSALMSD-KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQK-GFLVTFGVSIDKPN----TEFGY  154 (308)
T ss_dssp             EEEESSCCCHHHHHHHHHHTSC-TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHT-TCEEEEEEECSSCC----TTSEE
T ss_pred             EEeCCCCCChHHHHHHHHHHhC-CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhc-CCEEEEEEecCCCC----CCceE
Confidence            2223333465677888888773 24579999999999899889999986   4332 33444443332221    11223


Q ss_pred             EEeCCCccEEeeecCCC
Q 028260          191 CVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       191 ~v~~~~~~~~~~~~~~~  207 (211)
                      +..+.++++..|.+++.
T Consensus       155 i~~d~~~~V~~~~Ekp~  171 (308)
T 2qh5_A          155 IESPNGLDVKRFIEKPS  171 (308)
T ss_dssp             EECSSSSBCSEEEESCC
T ss_pred             EEECCCCEEEEEEECCC
Confidence            33366788889988754

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=99.71  E-value=6.5e-17  Score=136.65  Aligned_cols=146  Identities=19%  Similarity=0.191  Sum_probs=104.0

Q ss_pred             cEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHHH---HcCCeEeeC
Q 028260           49 RVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMT  116 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~~---~~~v~vi~~  116 (211)
                      .+.+||||||.|+||+      +|+|++++|+|||+|+++++.++ ++++|+|+++.   +++.+++.   .+++++.+.
T Consensus        24 ~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~~~~~~~~~~~~~~~i~~~  102 (269)
T 4ecm_A           24 AMKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQC-DITDIMIITGKEHMGDVVSFLGSGQEFGVSFTYR  102 (269)
T ss_dssp             CEEEEEECCSCCGGGTTTTSSSCGGGSEETTEEHHHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEE
T ss_pred             CcEEEEECCCCccccccccCCCCceecEECCEEHHHHHHHHHHHC-CCCEEEEECChhhHHHHHHHHhhccccCceEEEe
Confidence            3689999999999996      39999999999999999999998 49999999973   45555543   245565332


Q ss_pred             -CcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeC
Q 028260          117 -SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVD  194 (211)
Q Consensus       117 -~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~  194 (211)
                       .....|...++..+++.+.  .+.+++++||+|+.  ..++++++.+.+ ..+.++.+.  +..     ++.....+..
T Consensus       103 ~~~~~~G~~~al~~a~~~~~--~~~~lv~~~D~~~~--~~l~~l~~~~~~~~~~~~~~~~--~~~-----~~~~~g~v~~  171 (269)
T 4ecm_A          103 VQDKAGGIAQALGLCEDFVG--NDRMVVILGDNIFS--DDIRPYVEEFTNQKEGAKVLLQ--SVD-----DPERFGVANI  171 (269)
T ss_dssp             ECSSCCCHHHHHHTTHHHHT--TSEEEEEETTEEES--SCSHHHHHHHHTSSSSEEEEEE--ECS-----CGGGSEEEEE
T ss_pred             eCCccCcHHHHHHHHHHhcC--CCcEEEEeCCccCc--cCHHHHHHHHHhcCCCeEEEEE--ECC-----CCCCceEEEE
Confidence             2233455578888888874  68999999999875  678999988864 345444433  322     2222333333


Q ss_pred             CCccEEeeecCC
Q 028260          195 NHGYAIYFSRGL  206 (211)
Q Consensus       195 ~~~~~~~~~~~~  206 (211)
                      .+|.+..|.+++
T Consensus       172 d~g~v~~~~ekp  183 (269)
T 4ecm_A          172 QNRKIIEIEEKP  183 (269)
T ss_dssp             ETTEEEEEEESC
T ss_pred             cCCEEEEEEECC
Confidence            357888887664

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.70  E-value=3.7e-16  Score=142.91  Aligned_cols=150  Identities=17%  Similarity=0.207  Sum_probs=113.7

Q ss_pred             cEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHH----HcCCe--EeeCC
Q 028260           49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQ----QFGAD--VIMTS  117 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~----~~~v~--vi~~~  117 (211)
                      .+.+||||||+||||.   +|+|+|++|||||+|+|+.+.++ ++++|+|+++  .+.+++++.    .++.+  ++..+
T Consensus        12 ~~~vvILAaG~GtRm~~~~pK~l~pv~gkp~i~~~l~~~~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~q~   90 (501)
T 3st8_A           12 DTAVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSHVLHAIAKL-APQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQD   90 (501)
T ss_dssp             CEEEEEEECSCCGGGCCSSCGGGCEETTEEHHHHHHHHHHHH-CCSEEEEEECTTHHHHHHHHHHHHHHHTSCCEEEECS
T ss_pred             CceEEEECCcCcccCCCCCCHHHeEECChhHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            4788999999999995   59999999999999999999998 6999999986  456666553    34544  44443


Q ss_pred             cccCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCC-CeEEEeCC
Q 028260          118 ESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDN  195 (211)
Q Consensus       118 ~~~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~-~~~~v~~~  195 (211)
                       ...|+..++..+++.+.. ..+.++++.+|.|+++.+.+..+++.+++.. ..+++..+++     -|+. +-+++.+.
T Consensus        91 -~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~-~~~ti~~~~~-----~dp~~yG~i~~~~  163 (501)
T 3st8_A           91 -RPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVS-AAVTVLTTTL-----DDPFGYGRILRTQ  163 (501)
T ss_dssp             -SCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTT-CSEEEEEEEC-----SCCTTSCEEEECT
T ss_pred             -CCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhcc-ccceEeeecc-----CCchhcccccccc
Confidence             234556788889988853 2468999999999999999999999886532 2233333442     2443 56788899


Q ss_pred             CccEEeeecCC
Q 028260          196 HGYAIYFSRGL  206 (211)
Q Consensus       196 ~~~~~~~~~~~  206 (211)
                      +|.+..|.++.
T Consensus       164 ~g~v~~ivEk~  174 (501)
T 3st8_A          164 DHEVMAIVEQT  174 (501)
T ss_dssp             TCCEEEEECGG
T ss_pred             ceeEEeecccc
Confidence            99999988774

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=99.70  E-value=1.6e-16  Score=136.16  Aligned_cols=120  Identities=14%  Similarity=0.143  Sum_probs=91.4

Q ss_pred             EEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-------------
Q 028260           50 VVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-------------  108 (211)
Q Consensus        50 i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~-------------  108 (211)
                      +.+||||||.|+||+      +|+|++++|+|||+|+++++.++ ++++|+|++++  +.+.+++..             
T Consensus         9 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~   87 (302)
T 2e3d_A            9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVK   87 (302)
T ss_dssp             CEEEEECCSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECGGGHHHHHHHSCCHHHHHHHC----
T ss_pred             cEEEEECCcCcccCCccccCCCceeeEECCeEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhccc
Confidence            579999999999996      79999999999999999999988 59999999975  566655432             


Q ss_pred             ------------cCCeE-eeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCC----HH---HHHHHHHHHHhCCC
Q 028260          109 ------------FGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE----PE---IIDGVVKALQAAPD  168 (211)
Q Consensus       109 ------------~~v~v-i~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~----~~---~i~~li~~~~~~~d  168 (211)
                                  .++++ +..+....|...++..+++.+.  .+.+++++||+|+ +    ++   .++.+++.+.+...
T Consensus        88 ~~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~~~~~~l~~l~~~~~~~~~  164 (302)
T 2e3d_A           88 RQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVIL-DEYESDLSQDNLAEMIRRFDETGH  164 (302)
T ss_dssp             CHHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHC--SSCEEEECTTEEE-CTTSSCTTTSTHHHHHHHHHHHCC
T ss_pred             hhhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcC--CCcEEEEcCCccc-cCccccchHHHHHHHHHHHHhcCC
Confidence                        24444 2233334566678888888873  4789999999997 5    45   79999998864333


Q ss_pred             eEEEE
Q 028260          169 AVFST  173 (211)
Q Consensus       169 ~vv~v  173 (211)
                      .++++
T Consensus       165 ~~i~~  169 (302)
T 2e3d_A          165 SQIMV  169 (302)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            44443

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=99.70  E-value=7.6e-17  Score=138.77  Aligned_cols=145  Identities=20%  Similarity=0.191  Sum_probs=102.8

Q ss_pred             EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC---cHHHHHHHHH---cCCeEee-CC
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQ---FGADVIM-TS  117 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~---~e~i~~~~~~---~~v~vi~-~~  117 (211)
                      .+||||||.|+||+      +|+|++++|+|||+|+++++..+ ++++|+|+++   .+.+.+++.+   +++++.+ ..
T Consensus         5 ~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~-gi~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~   83 (296)
T 1mc3_A            5 KGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA-GIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQ   83 (296)
T ss_dssp             EEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEEC
T ss_pred             EEEEECCCCCCcCCcccCCCCceeeEECCeeHHHHHHHHHHhC-CCCcEEEEechhHHHHHHHHHhcccccCceEEEecc
Confidence            58999999999997      79999999999999999999987 4999988764   3556666643   5666522 22


Q ss_pred             cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCe-EEEeCC
Q 028260          118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDN  195 (211)
Q Consensus       118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~-~~v~~~  195 (211)
                      +...|...++..|++.+.  .+.++++.||+||.+ ..+..+++.+.+ ..++++..  .++     .|++.+ .+..|.
T Consensus        84 ~~~~G~~~al~~a~~~i~--~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v~~--~~v-----~dp~~yg~v~~d~  153 (296)
T 1mc3_A           84 PSPDGLAQAFIIGETFLN--GEPSCLVLGDNIFFG-QGFSPKLRHVAARTEGATVFG--YQV-----MDPERFGVVEFDD  153 (296)
T ss_dssp             SSCCCSTHHHHHTHHHHT--TSCEEEEETTEEEEC-SSCHHHHHHHTTCCSSEEEEE--EEC-----SCCSSSBBCEEET
T ss_pred             CCCCCHHHHHHHHHHHhC--CCCEEEEECCccccc-cCHHHHHHHHHHcCCCCEEEE--EEC-----CCcccCCEEEECC
Confidence            233466678888888874  345555669999988 578888888743 34444422  221     133332 344578


Q ss_pred             CccEEeeecCC
Q 028260          196 HGYAIYFSRGL  206 (211)
Q Consensus       196 ~~~~~~~~~~~  206 (211)
                      +|++..|.+++
T Consensus       154 ~g~v~~~~ekp  164 (296)
T 1mc3_A          154 NFRAISLEEKP  164 (296)
T ss_dssp             TEEEEECCBSC
T ss_pred             CCcEEEEEECC
Confidence            88888887765

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=99.69  E-value=4.7e-17  Score=134.67  Aligned_cols=113  Identities=23%  Similarity=0.264  Sum_probs=88.4

Q ss_pred             CcEEEEEecCCC---CCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCC
Q 028260           48 SRVVGIIPARFA---SSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRN  122 (211)
Q Consensus        48 m~i~aIIlA~G~---ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g  122 (211)
                      |++.+||||||.   |+||+  +|+|++++|+|||+|+++++.+++ + +|+|+++.+++.+++   ++.+    ....|
T Consensus         1 m~~~~vIlAaG~tRl~~r~~~~~K~l~~i~g~pll~~~l~~l~~~~-~-~ivvv~~~~~i~~~~---~~~~----~~~~g   71 (232)
T 2dpw_A            1 MRPSAIVLAGGKEAWAERFGVGSKALVPYRGRPMVEWVLEALYAAG-L-SPVYVGENPGLVPAP---ALTL----PDRGG   71 (232)
T ss_dssp             CCCEEEEECCCBCSGGGTTTCSBGGGSEETTEETHHHHHHHHHHTT-C-EEEEESCCSSCSSCC---SEEE----CCCSS
T ss_pred             CceeEEEECCCCCccccccCCCCceeeEECCEEHHHHHHHHHHhcC-C-EEEEEeChHHHhhhc---CeEe----cCCCC
Confidence            567899999999   99997  599999999999999999999874 5 888887654333222   4433    23456


Q ss_pred             ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEE
Q 028260          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST  173 (211)
Q Consensus       123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v  173 (211)
                      ...++..|++.+.   +++++++||+||++++.++.+++ +.+..+.+++.
T Consensus        72 ~~~~i~~a~~~~~---~~~lv~~~D~P~~~~~~i~~l~~-~~~~~~~~~~~  118 (232)
T 2dpw_A           72 LLENLEQALEHVE---GRVLVATGDIPHLTEEAVRFVLD-KAPEAALVYPI  118 (232)
T ss_dssp             HHHHHHHHHHTCC---SEEEEEETTCTTCCHHHHHHHHH-HCCSCSEEEEE
T ss_pred             HHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHh-cCCCCCEEEEE
Confidence            6788999998873   79999999999999999999998 54334544443

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=99.68  E-value=4e-17  Score=137.19  Aligned_cols=139  Identities=19%  Similarity=0.182  Sum_probs=102.6

Q ss_pred             CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcc
Q 028260           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSES  119 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~  119 (211)
                      |++.+||||||.|+||+      +|+|++++|+|||+|+++++.++ ++++|+|+++  .+.+..+.+.+++.++..++.
T Consensus        24 ~~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~iv~~~~~  102 (254)
T 1jyk_A           24 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEK-GINDIIIIVGYLKEQFDYLKEKYGVRLVFNDKY  102 (254)
T ss_dssp             CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCCEEEEECTTGGGGTHHHHHHCCEEEECTTT
T ss_pred             cCceEEEECCCCcccCCcccCCCCCEEeeECCEEHHHHHHHHHHHC-CCCeEEEEeCCcHHHHHHHHHhCCcEEEECCCc
Confidence            56889999999999997      69999999999999999999988 4899999986  456666666678887776543


Q ss_pred             -cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCC-CCeEEEeCCCc
Q 028260          120 -CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP-NRVKCVVDNHG  197 (211)
Q Consensus       120 -~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~-~~~~~v~~~~~  197 (211)
                       ..|...++..+++.+.   + +++++||+|+.. +.++.++    + .+.++++...        ++ ..+.++.|.+|
T Consensus       103 ~~~g~~~al~~a~~~~~---~-~lv~~~D~~~~~-~~~~~~~----~-~~~~~t~~~~--------~~~~~~~v~~d~~g  164 (254)
T 1jyk_A          103 ADYNNFYSLYLVKEELA---N-SYVIDADNYLFK-NMFRNDL----T-RSTYFSVYRE--------DCTNEWFLVYGDDY  164 (254)
T ss_dssp             TTSCTHHHHHTTGGGCT---T-EEEEETTEEESS-CCCCSCC----C-SEEEEECEES--------SCSSCCEEEECTTC
T ss_pred             cCCCcHHHHHHHHHHCC---C-EEEEeCCcccCH-HHHHHHH----h-CCceEEEEcc--------cCCCCeEEEECCCC
Confidence             3355677777777662   3 789999999988 5554433    1 2334443321        11 13456688899


Q ss_pred             cEEeeecC
Q 028260          198 YAIYFSRG  205 (211)
Q Consensus       198 ~~~~~~~~  205 (211)
                      ++..|+++
T Consensus       165 ~v~~~~e~  172 (254)
T 1jyk_A          165 KVQDIIVD  172 (254)
T ss_dssp             BEEEEECC
T ss_pred             eEEEEEEC
Confidence            99999875

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=99.67  E-value=1e-16  Score=137.16  Aligned_cols=123  Identities=11%  Similarity=0.159  Sum_probs=92.6

Q ss_pred             CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH-----------
Q 028260           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-----------  108 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~-----------  108 (211)
                      +.+.+||||||.|+||+      +|+|++++|+|||+|+++++.++ ++++|+|+++  .+.+.+++..           
T Consensus        13 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~   91 (297)
T 2ux8_A           13 PLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEA-GIEQMIFVTGRGKSALEDHFDIAYELEATMAAR   91 (297)
T ss_dssp             CCCEEEEEECCCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTT
T ss_pred             CccEEEEECCCCccccCccccCCCceeeeECCeEHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhc
Confidence            44679999999999995      69999999999999999999988 5999999997  4666665432           


Q ss_pred             ------------cCCeE-eeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCC--HHHHHHHHHHHHhCCCeEEEE
Q 028260          109 ------------FGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE--PEIIDGVVKALQAAPDAVFST  173 (211)
Q Consensus       109 ------------~~v~v-i~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~--~~~i~~li~~~~~~~d~vv~v  173 (211)
                                  .+..+ +..++...|...++..|++.+.  .+.+++++||+|+ +  +..++.+++.+.+....++++
T Consensus        92 ~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~l~~l~~~~~~~~~~~i~~  168 (297)
T 2ux8_A           92 GKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVG--DEPFAVLLPDDFM-FGQPGCLKQMVDAYNKVGGNLICA  168 (297)
T ss_dssp             TCCGGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHC--SSCEEEECTTEEE-ESSSCHHHHHHHHHHHHCSEEEEE
T ss_pred             cchhhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcC--CCcEEEEeCCeec-CCChHHHHHHHHHHHhcCCCEEEE
Confidence                        23344 2222334566678888888773  5789999999994 5  579999999886433344444


Q ss_pred             e
Q 028260          174 A  174 (211)
Q Consensus       174 ~  174 (211)
                      .
T Consensus       169 ~  169 (297)
T 2ux8_A          169 E  169 (297)
T ss_dssp             C
T ss_pred             E
Confidence            3

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.67  E-value=1.8e-16  Score=137.57  Aligned_cols=123  Identities=14%  Similarity=0.121  Sum_probs=90.8

Q ss_pred             EEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-------------
Q 028260           50 VVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-------------  108 (211)
Q Consensus        50 i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~-------------  108 (211)
                      +.+||||||.|+||+      +|+|++++|+|||+|+++++.++ ++++|+|+++.  +.+.+++..             
T Consensus        13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~~~   91 (323)
T 2pa4_A           13 KTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAEL-GATRLAIITAPNKAGVLAHFERSSELEETLMERGK   91 (323)
T ss_dssp             CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHTTC
T ss_pred             eEEEEECCCCccccCccccCCCceeeeECCEEHHHHHHHHHHhC-CCCEEEEEecCcHHHHHHHHhccchhhhhhhccch
Confidence            469999999999994      69999999999999999999987 59999999875  555544321             


Q ss_pred             -----------cCCeE-eeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCC-HHHHHHHHHHHHhCCCeEEEEe
Q 028260          109 -----------FGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTA  174 (211)
Q Consensus       109 -----------~~v~v-i~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~-~~~i~~li~~~~~~~d~vv~v~  174 (211)
                                 .+..+ +..++...|...++..+++.+..+.|.+++++||+|+ + +..++.+++.+.+....++++.
T Consensus        92 ~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~-~~~~~l~~l~~~~~~~~~~~i~~~  169 (323)
T 2pa4_A           92 TDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLV-LPTGVMERMAQVRAEFGGSVLCAV  169 (323)
T ss_dssp             HHHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEE-ESSCHHHHHHHHHHTTCSEEEEEE
T ss_pred             hhhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCccc-CchHHHHHHHHHHHhcCCcEEEEE
Confidence                       23444 2223334566677888887774333459999999999 7 6899999998865433444443

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=99.65  E-value=1.4e-15  Score=131.05  Aligned_cols=154  Identities=12%  Similarity=0.061  Sum_probs=106.6

Q ss_pred             CCCcEEEEEecCCCCCCCC-Ccccccc--CCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHHHH---cCCe--Ee
Q 028260           46 FRSRVVGIIPARFASSRFE-GKPLVNI--LGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQQ---FGAD--VI  114 (211)
Q Consensus        46 ~~m~i~aIIlA~G~ssRlg-~K~ll~l--~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~~~---~~v~--vi  114 (211)
                      .||++.+||||||.|+||+ +|+|+++  +|+|||+|+++++.++ ++++|+|+++.   +.+.+++..   .+.+  ++
T Consensus         2 ~~m~~~~vIlAaG~g~R~~~~K~l~~ig~~g~pli~~~l~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~i~~~   80 (303)
T 3pnn_A            2 NAMKPTLFVLAAGMGSRYGSLKQLDGIGPGGDTIMDYSVYDAIRA-GFGRLVFVIRHSFEKEFREKILTKYEGRIPVELV   80 (303)
T ss_dssp             -CCCCEEEEECTTCBCTTSSBCCCCCCSTTSCCHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHHTHHHHTTTSCEEEE
T ss_pred             CCCceEEEEECCCCcccCCCCceEeEcCCCCeeHHHHHHHHHHHC-CCCeEEEEcCchHHHHHHHHHHHHhccCCcEEEE
Confidence            4678899999999999996 5999999  6999999999999887 59999999974   345554432   1333  33


Q ss_pred             eCCc--------------ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC--CCeEEEEeeeeC
Q 028260          115 MTSE--------------SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA--PDAVFSTAVTSL  178 (211)
Q Consensus       115 ~~~~--------------~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~d~vv~v~~~~~  178 (211)
                      ..+.              ...|...++..+.+.+   .+.++|+.+|+ +++.+.++.+++.+.++  .++.+++....+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i---~~~~lV~~gD~-l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~  156 (303)
T 3pnn_A           81 FQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI---REPFAVINADD-FYGRNGFEVLARKLMTLEGKQGEYCMVGYRV  156 (303)
T ss_dssp             ECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC---CSCEEEEESSC-BCCHHHHHHHHHHHHTTTTCSSEEEEEEEEG
T ss_pred             ecccccccccccccccccccCCcHHHHHHHHHhc---CCCEEEEECCe-ecCHHHHHHHHHHHHHhccccCceEEEEEEC
Confidence            3321              1234456777777766   36789999999 78998899999988641  233334433332


Q ss_pred             CCCCCCCCC----CeEEEeCCCccEEeeecCC
Q 028260          179 KPEDAFDPN----RVKCVVDNHGYAIYFSRGL  206 (211)
Q Consensus       179 ~~~~~~d~~----~~~~v~~~~~~~~~~~~~~  206 (211)
                      ..  ++.+.    ...+..|++|++..|.+++
T Consensus       157 ~~--~~~~~g~~~~G~v~~d~~g~v~~i~Ekp  186 (303)
T 3pnn_A          157 GN--TLSESGGVSRGVCQVDEKHLLTGVVERT  186 (303)
T ss_dssp             GG--SCBTTBCEEEEEEEECTTSBEEEEEEEE
T ss_pred             CC--ccCccCceeeeeEeeCCCCcEEEEEECC
Confidence            21  11111    1356778889999998775

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=99.64  E-value=9.1e-16  Score=127.86  Aligned_cols=146  Identities=16%  Similarity=0.193  Sum_probs=96.7

Q ss_pred             CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHc-----CCeE-
Q 028260           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-----GADV-  113 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~-----~v~v-  113 (211)
                      |++.+||||||.|+||+      +|+|++++|+|||+|+++++.++ ++++|+|+++  .+.+.+++.+.     ++.+ 
T Consensus         1 m~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~   79 (259)
T 1tzf_A            1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH-GIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH   79 (259)
T ss_dssp             CCCEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred             CCcEEEEECCCCcccCCCccCCCCccccEECCEEHHHHHHHHHHHC-CCCEEEEEcccCHHHHHHHHhhccccccccccc
Confidence            45679999999999996      69999999999999999999998 4999999995  45666666542     3332 


Q ss_pred             -------eeCC------------cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEE
Q 028260          114 -------IMTS------------ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFST  173 (211)
Q Consensus       114 -------i~~~------------~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v  173 (211)
                             +.++            +...|...++..+++.+. ..+.++++.+|+ +. ...++++++.+.+ +.+.  ++
T Consensus        80 ~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~-~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~~~~~--t~  154 (259)
T 1tzf_A           80 MAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK-DDEAFLFTYGDG-VA-DLDIKATIDFHKAHGKKA--TL  154 (259)
T ss_dssp             GGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT-TSSCEEEEETTE-EE-CCCHHHHHHHHHHHCCSE--EE
T ss_pred             ccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcC-CCCcEEEEECCE-ec-ccCHHHHHHHHHHhCCeE--EE
Confidence                   2211            012344467777777763 257899999998 43 4678999988753 3333  22


Q ss_pred             eeeeCCCCCCCCCCCe-EEEeCCCccEEeeecCCC
Q 028260          174 AVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       174 ~~~~~~~~~~~d~~~~-~~v~~~~~~~~~~~~~~~  207 (211)
                      ...+       ++..+ .+..+ +|++..|.+++.
T Consensus       155 ~~~~-------~~~~~g~v~~~-~g~v~~~~ekp~  181 (259)
T 1tzf_A          155 TATF-------PPGRFGALDIQ-AGQVRSFQEKPK  181 (259)
T ss_dssp             EEEC-------CCCCSEEEEEE-TTEEEEEEESCS
T ss_pred             EEec-------CCCCccEEEEc-CCEEEEEEecCC
Confidence            2221       12223 34455 788888887653

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.63  E-value=2.2e-15  Score=134.66  Aligned_cols=154  Identities=15%  Similarity=0.149  Sum_probs=108.7

Q ss_pred             CCC-cEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-cCC---
Q 028260           46 FRS-RVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-FGA---  111 (211)
Q Consensus        46 ~~m-~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~-~~v---  111 (211)
                      .|| ++.+||||||.|+||+      +|+|++++|+ |||+|+++++.++ ++++|+|+++.  +.+.+++.+ ++.   
T Consensus         8 ~mm~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~~~~~   86 (420)
T 3brk_X            8 PLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNS-GIRRIGVATQYKAHSLIRHLQRGWDFFRP   86 (420)
T ss_dssp             CGGGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHHHHHSCCCCG
T ss_pred             hhhhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhC-CCCeEEEEeCCChHHHHHHHhhhhccccc
Confidence            344 6899999999999997      6999999999 9999999999988 59999999975  677776654 442   


Q ss_pred             ------eEeeCCc----c--cCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeee
Q 028260          112 ------DVIMTSE----S--CRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTS  177 (211)
Q Consensus       112 ------~vi~~~~----~--~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~  177 (211)
                            .++....    +  ..|...+++.+++.+.. +.+.+++++||+ +. ...++++++.+.+ ..+.++.+...+
T Consensus        87 ~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~-~~-~~~l~~l~~~~~~~~~~~tl~~~~~~  164 (420)
T 3brk_X           87 ERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDH-IY-KMDYEYMLQQHVDSGADVTIGCLEVP  164 (420)
T ss_dssp             GGTCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSC-EE-CBCTHHHHHHHHHTTCSEEEEEEEEE
T ss_pred             cccCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccE-EE-chHHHHHHHHHHHcCCeEEEEEeecC
Confidence                  2222111    1  14566788888887742 347899999999 54 4568899988854 345544443222


Q ss_pred             CCCCCCCCC-CCeEEEeCCCccEEeeecCCC
Q 028260          178 LKPEDAFDP-NRVKCVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       178 ~~~~~~~d~-~~~~~v~~~~~~~~~~~~~~~  207 (211)
                      ..     ++ ..-.+..+++|++..|.+++.
T Consensus       165 ~~-----~~~~~g~v~~d~~g~v~~~~ekp~  190 (420)
T 3brk_X          165 RM-----EATGFGVMHVNEKDEIIDFIEKPA  190 (420)
T ss_dssp             TT-----GGGGSEEEEECTTSBEEEEEESCS
T ss_pred             cc-----ccCcccEEEECCCCcEEEeEeCCC
Confidence            11     12 233455688899999988754

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.62  E-value=1.4e-15  Score=134.60  Aligned_cols=138  Identities=17%  Similarity=0.179  Sum_probs=97.3

Q ss_pred             EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc--CCeEeeCCcccCC
Q 028260           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF--GADVIMTSESCRN  122 (211)
Q Consensus        51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~--~v~vi~~~~~~~g  122 (211)
                      .+||||||.|+||+      +|+|++++|+|||+|+++++.+++ +++++|+++++ +.+++...  ++.++..+....|
T Consensus         2 ~aiIlA~G~g~R~~plt~~~~K~ll~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~-i~~~~~~~~~~i~~~~~~~~~~g   79 (401)
T 2ggo_A            2 KAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCG-IRDITVIVSSK-NKEYFEKKLKEISIVTQKDDIKG   79 (401)
T ss_dssp             EEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECGG-GHHHHHHHCTTCEEEECCTTCCB
T ss_pred             eEEEEcCcCccccCcccCCCCcceeeECCEeHHHHHHHHHHHCC-CCEEEEEeCHH-HHHHhhccCCcEEEEeCCCCCCC
Confidence            48999999999995      699999999999999999999884 99999999877 66666554  4666554331334


Q ss_pred             ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCC-CCeEEEeCCCccEEe
Q 028260          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP-NRVKCVVDNHGYAIY  201 (211)
Q Consensus       123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~-~~~~~v~~~~~~~~~  201 (211)
                      ...++..+++     .++++++.||+|+.+++.++++++    ..+..+.+.  +..     |+ +.-.++.+.+|++..
T Consensus        80 ~~~~l~~~~~-----~~~~lv~~~D~~~~~~~~~~~l~~----~~~~~i~~~--~~~-----~~~~~~~v~~~~~g~v~~  143 (401)
T 2ggo_A           80 TGAAILSAKF-----NDEALIIYGDLFFSNEKEICNIIT----LKENAIIGV--KVS-----NPKDYGVLVLDNQNNLSK  143 (401)
T ss_dssp             STTTGGGCCC-----SSEEEEEETTEEESCSHHHHHHTT----CSSEEEEEE--ECS-----CCSSSCEEEECTTSSEEE
T ss_pred             hHHHHHHhcc-----CCCEEEEeCccccccHHHHHHHHH----hcCCEEEEE--EcC-----CCcceeEEEECCCCeEEE
Confidence            4443333221     578999999999998999988886    234444332  221     11 122455566777777


Q ss_pred             eecCC
Q 028260          202 FSRGL  206 (211)
Q Consensus       202 ~~~~~  206 (211)
                      |.+++
T Consensus       144 ~~ek~  148 (401)
T 2ggo_A          144 IIEKP  148 (401)
T ss_dssp             EECSC
T ss_pred             EEECC
Confidence            76643

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=99.61  E-value=5.6e-15  Score=129.25  Aligned_cols=154  Identities=11%  Similarity=0.089  Sum_probs=102.2

Q ss_pred             CcEEEEEecCCCCCCCC-------CccccccCC-eehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcC-CeEeeCCc
Q 028260           48 SRVVGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG-ADVIMTSE  118 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg-------~K~ll~l~G-kpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~-v~vi~~~~  118 (211)
                      |++.+||||||.|+||.       +|+|++++| +|||+|+++++..+.++++++|++++++...+.+.++ ..++..+ 
T Consensus         1 M~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~~~~i~e~-   79 (337)
T 2cu2_A            1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADGIRLLLEP-   79 (337)
T ss_dssp             CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSSSEEEEES-
T ss_pred             CCeEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhccCceEecC-
Confidence            56789999999999992       699999998 9999999999998755899999998765443333333 2323332 


Q ss_pred             ccCCChHHHHHHHHhhc--cCCCEEEEEcCCCcCCCHHHHHHHHHHHHh--CCCeEEEEeeeeCCCCCCCCCCCeEEEeC
Q 028260          119 SCRNGTERCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKCVVD  194 (211)
Q Consensus       119 ~~~g~~~si~~al~~l~--~~~d~vlv~~~D~Pli~~~~i~~li~~~~~--~~d~vv~v~~~~~~~~~~~d~~~~~~v~~  194 (211)
                      ...|...++..+.. +.  ...+.+++++||+|+.+++.++.+++.+.+  ..+.++++..++..+++.    .-....+
T Consensus        80 ~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~~t~----yG~I~~~  154 (337)
T 2cu2_A           80 LGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETE----YGYIRLG  154 (337)
T ss_dssp             SCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSS----SCEEEEE
T ss_pred             CCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCCCCC----ceEEEEC
Confidence            22344445655554 32  135789999999999999998888776521  124555555444322221    2222234


Q ss_pred             CC----ccEEeeecCCC
Q 028260          195 NH----GYAIYFSRGLI  207 (211)
Q Consensus       195 ~~----~~~~~~~~~~~  207 (211)
                      ++    +.+..|.+++.
T Consensus       155 ~~~~~~~~V~~f~EKp~  171 (337)
T 2cu2_A          155 PREGAWYRGEGFVEKPS  171 (337)
T ss_dssp             EEETTEEEEEEEECCCC
T ss_pred             CcccccCeEEEEEeCCC
Confidence            44    67888888753

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=99.60  E-value=9.4e-15  Score=127.79  Aligned_cols=150  Identities=17%  Similarity=0.237  Sum_probs=99.5

Q ss_pred             EEEEecCCCCCCCC-------CccccccCC-eehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcC----CeEeeCCc
Q 028260           51 VGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG----ADVIMTSE  118 (211)
Q Consensus        51 ~aIIlA~G~ssRlg-------~K~ll~l~G-kpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~----v~vi~~~~  118 (211)
                      .+||||||.|+||+       +|+|++++| +|||+|+++++....++++++|++++++...+.+.++    ..++..+ 
T Consensus         3 ~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~~~ii~e~-   81 (336)
T 2x65_A            3 KALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEP-   81 (336)
T ss_dssp             EEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCGGGEEEES-
T ss_pred             EEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccccceEEeCC-
Confidence            58999999999994       699999998 9999999999998656899999998654333333222    2444443 


Q ss_pred             ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHH----HHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeC
Q 028260          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA----LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD  194 (211)
Q Consensus       119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~----~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~  194 (211)
                      ...|...++..+...+. ..+.+++++||+|+.+++.++.+++.    +.+. +.++++..++..+++    ..-....+
T Consensus        82 ~~~gta~ai~~a~~~~~-~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~-~~~vt~~i~p~~~~~----~yG~I~~~  155 (336)
T 2x65_A           82 MKKNTAPACFIGTKLAD-DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKY-DGLFTFGIVPTRPET----GYGYIEIG  155 (336)
T ss_dssp             SCCCHHHHHHHHHTTSC-TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHH-CSEEEEEECCCSCCS----SSEEEEEE
T ss_pred             CCCCcHHHHHHHHHhhC-CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhc-CCeEEEEeecccCCC----CceEEEEC
Confidence            23455566766666542 35789999999999998887777665    3331 234444433322221    12222334


Q ss_pred             CC-----ccEEeeecCCC
Q 028260          195 NH-----GYAIYFSRGLI  207 (211)
Q Consensus       195 ~~-----~~~~~~~~~~~  207 (211)
                      ++     +.+..|.+++.
T Consensus       156 ~~~~~~~~~V~~f~EKp~  173 (336)
T 2x65_A          156 EELEEGVHKVAQFREKPD  173 (336)
T ss_dssp             EEEETTEEEEEEEEESCC
T ss_pred             CccCCCccEEEEEEECCC
Confidence            33     57888887753

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=99.56  E-value=6.7e-15  Score=123.86  Aligned_cols=141  Identities=14%  Similarity=0.125  Sum_probs=97.2

Q ss_pred             EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHc-CCCCCeEEEEcCc--H---HHHHHHHHcCC---eEeeC
Q 028260           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKL-ATTLDHLVVATDD--E---KIAECCQQFGA---DVIMT  116 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~-~~~id~IVVvt~~--e---~i~~~~~~~~v---~vi~~  116 (211)
                      +||||||.|+||.      +|+|++++|+|||+|+++++.+ + ++++|+|+++.  +   .+.+...+++.   .++..
T Consensus         2 ~iIlAaG~GtRl~plt~~~PK~llpv~gkpli~~~l~~l~~~~-gi~~iivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (255)
T 4evw_A            2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYF-ASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAEL   80 (255)
T ss_dssp             EEEECCSCCHHHHHTTCCSCGGGCEETTEEHHHHHHGGGGGGT-TTSCEEEEEESSTTHHHHHHHHHHHHTCSSEEEEEE
T ss_pred             EEEEcCCCCcccccCCCCCCccccEECCeEHHHHHHHHHhccC-CCceEEEEECchhhhHHHHHHHHHHcCCCCceEEEe
Confidence            7999999999994      6999999999999999999998 5 58898888753  2   33343444442   23444


Q ss_pred             CcccCCChHHHHHHHHhhc----cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEE
Q 028260          117 SESCRNGTERCNEALQKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV  192 (211)
Q Consensus       117 ~~~~~g~~~si~~al~~l~----~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v  192 (211)
                      ++...|...++..|++.+.    ...+.++|+.+|+ +++...+..+    ....+.++.+.  ++.     ++..-++.
T Consensus        81 ~~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~-l~~~~~~~~~----~~~~~~~i~~~--~~~-----~p~yG~v~  148 (255)
T 4evw_A           81 HTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDT-FRPNFVFPDI----SQHSDGYLEVF--QGG-----GDNWSFAK  148 (255)
T ss_dssp             SSCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTE-ECTTCCCCGG----GGSSSEEEEEE--ECC-----SSCSCEEE
T ss_pred             CCCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCE-EEecchhHHH----hhcCCcEEEEE--ecC-----CCceeEEE
Confidence            4445566678999998882    2356799999999 7754344332    34455544433  321     23455666


Q ss_pred             eCCCc--cEEeeecC
Q 028260          193 VDNHG--YAIYFSRG  205 (211)
Q Consensus       193 ~~~~~--~~~~~~~~  205 (211)
                      .+++|  ++..|.++
T Consensus       149 ~d~~g~~~V~~i~EK  163 (255)
T 4evw_A          149 PEHAGSTKVIQTAEK  163 (255)
T ss_dssp             ESSTTCCBEEEEESS
T ss_pred             ECCCCCeEEEEEEec
Confidence            78888  88888876

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.53  E-value=5.6e-14  Score=126.40  Aligned_cols=154  Identities=17%  Similarity=0.181  Sum_probs=100.3

Q ss_pred             CCcEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-c--C----
Q 028260           47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--G----  110 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~-~--~----  110 (211)
                      |+++.+||||||.|+||+      +|+|++++|+ |||+|+++++.++ ++++|+|+++.  +.+.+++.+ +  +    
T Consensus        18 ~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~   96 (451)
T 1yp2_A           18 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGY   96 (451)
T ss_dssp             HHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHT-TCCEEEEEESCCCHHHHHHHHHHCC------
T ss_pred             ccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHhhhhhcccccc
Confidence            345889999999999996      6999999999 9999999999987 59999999864  556555532 3  1    


Q ss_pred             -----CeEeeC---C---cccCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeee
Q 028260          111 -----ADVIMT---S---ESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTS  177 (211)
Q Consensus       111 -----v~vi~~---~---~~~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~  177 (211)
                           ++++..   +   +...|...+++.+++.+.. ..+.+++++||+ +.+ ..++++++.+.+ ..+.++.+....
T Consensus        97 ~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~-~~~-~~l~~l~~~~~~~~~~~tl~~~~~~  174 (451)
T 1yp2_A           97 KNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDH-LYR-MDYEKFIQAHRETDADITVAALPMD  174 (451)
T ss_dssp             --CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCE-ECC-CCHHHHHHHHHHTTCSEEEEEEEEC
T ss_pred             cccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcE-EEc-CCHHHHHHHHHHcCCcEEEEEEEcC
Confidence                 123221   1   1124556788888888742 257999999999 554 468899988854 344444332221


Q ss_pred             CCCCCCCCCCCeEEEeCCCccEEeeecCCC
Q 028260          178 LKPEDAFDPNRVKCVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       178 ~~~~~~~d~~~~~~v~~~~~~~~~~~~~~~  207 (211)
                      ..+  .  .+.-.+..|.++++++|.+++.
T Consensus       175 ~~~--~--~~~g~v~~d~~~~v~~~~ekp~  200 (451)
T 1yp2_A          175 EKR--A--TAFGLMKIDEEGRIIEFAEKPQ  200 (451)
T ss_dssp             HHH--H--TTSEEEEECTTSBEEEEEESCC
T ss_pred             hhh--c--ccCCEEEECCCCCEEEEEECCC
Confidence            000  0  1233566788899999998864

>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21

Probab=99.04  E-value=3.3e-10  Score=92.11  Aligned_cols=102  Identities=21%  Similarity=0.253  Sum_probs=78.2

Q ss_pred             EEEEEec--CCCCCCCCC---ccccccCCeehHHHHHHHHHcCCCCCeE-EEEcCcHHHHHHHHHcCCeEeeCCcccCCC
Q 028260           50 VVGIIPA--RFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHL-VVATDDEKIAECCQQFGADVIMTSESCRNG  123 (211)
Q Consensus        50 i~aIIlA--~G~ssRlg~---K~ll~l~GkpLl~~~i~~l~~~~~id~I-VVvt~~e~i~~~~~~~~v~vi~~~~~~~g~  123 (211)
                      +.+|||+  |...||+++   +......++||++|+++++..+ .++.+ +|+++++....+   +++.++.++   .|.
T Consensus         4 ~~~vip~k~g~~KtRL~~~l~~~~~~~l~~~ll~~vl~~l~~~-~~~~v~vvv~~~~~~~~~---~~~~~v~~~---~gl   76 (211)
T 2i5e_A            4 MRAVIPYKKAGAKSRLSPVLSLQEREEFVELMLNQVISSLKGA-GIEQVDILSPSVYGLEEM---TEARVLLDE---KDL   76 (211)
T ss_dssp             CEEEEECCCTTTTGGGTTTSCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEESSCTTCSSC---CSSEEEECC---SCH
T ss_pred             eEEEEEeCCCCCccccCccCCHHHHHHHHHHHHHHHHHHHHHc-CCceEEEEEcCcHHHHhh---cCCEEEECC---CCH
Confidence            5689999  667788863   2223355799999999999987 48899 888876543222   467776654   455


Q ss_pred             hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHH
Q 028260          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK  161 (211)
Q Consensus       124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~  161 (211)
                      .+++..+++.+   .++++++.||+|++++++++.+++
T Consensus        77 ~~sl~~a~~~~---~~~vlvi~~D~P~l~~~~i~~l~~  111 (211)
T 2i5e_A           77 NEALNRYLKEA---EEPVLIVMADLPLLSPEHIKEISS  111 (211)
T ss_dssp             HHHHHHHHHHC---CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred             HHHHHHHHHhc---CCCEEEEcCCcCCCCHHHHHHHHc
Confidence            67888888876   478999999999999999999987

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}

Probab=98.83  E-value=2.5e-08  Score=91.15  Aligned_cols=122  Identities=12%  Similarity=0.162  Sum_probs=77.8

Q ss_pred             CCcEEEEEecCCCCCCCC---CccccccC-CeehHHHHHHHHHcCC---CCC-eEEEEcC---cHHHHHHHHHc---CCe
Q 028260           47 RSRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLAT---TLD-HLVVATD---DEKIAECCQQF---GAD  112 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~-GkpLl~~~i~~l~~~~---~id-~IVVvt~---~e~i~~~~~~~---~v~  112 (211)
                      ..++.+||||||.|+||+   +|.|+++. |+|||+|++++++..+   ++. +++|++.   ++.+.++++++   +.+
T Consensus        90 ~~k~avViLAGG~GTRmgs~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~fg~~  169 (488)
T 2i5k_A           90 LSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIR  169 (488)
T ss_dssp             GGGEEEEEECCCBSGGGTCCSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCSSSCE
T ss_pred             cCCceEEEEcCCCcccCCCCCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccccCce
Confidence            346889999999999997   59999998 9999999999988652   122 3555443   46777777653   344


Q ss_pred             E--eeCC----------------------cccCCChHHHHHH------HHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHH
Q 028260          113 V--IMTS----------------------ESCRNGTERCNEA------LQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVK  161 (211)
Q Consensus       113 v--i~~~----------------------~~~~g~~~si~~a------l~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~  161 (211)
                      +  +...                      ...+.|+..+..+      ++.+. ...++++|+.+|. ++...++.. +.
T Consensus       170 i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~~-L~  247 (488)
T 2i5k_A          170 IRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLKI-LN  247 (488)
T ss_dssp             EEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHHH-HH
T ss_pred             EEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHHH-HH
Confidence            3  2111                      0123333322232      34442 2368999999999 887766653 35


Q ss_pred             HHH-hCCCeE
Q 028260          162 ALQ-AAPDAV  170 (211)
Q Consensus       162 ~~~-~~~d~v  170 (211)
                      .+. ++.+..
T Consensus       248 ~~~~~~a~~t  257 (488)
T 2i5k_A          248 HMIETGAEYI  257 (488)
T ss_dssp             HHHHSCCSEE
T ss_pred             HHHhcCCcEE
Confidence            543 333433

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*

Probab=98.76  E-value=1.9e-07  Score=85.63  Aligned_cols=104  Identities=18%  Similarity=0.188  Sum_probs=70.0

Q ss_pred             CcEEEEEecCCCCCCCC---Ccccccc---CCeehHHHHHHHHHc--------CC---CCCeEEEEcC--cHHHHHHHHH
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKL--------AT---TLDHLVVATD--DEKIAECCQQ  108 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l---~GkpLl~~~i~~l~~--------~~---~id~IVVvt~--~e~i~~~~~~  108 (211)
                      .++.+||||||.|+|||   +|+++++   .|+|+|++.+++++.        .+   .+..+++++.  ++.+.+++++
T Consensus       101 ~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~~f~~  180 (505)
T 1jv1_A          101 NKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTK  180 (505)
T ss_dssp             TCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHH
T ss_pred             CceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHHHHHh
Confidence            46889999999999998   6999999   799999999999876        12   3656666664  4677777754


Q ss_pred             ---cCCe---E--eeCC-------------------cccCCChHHHHHHHH------hhc-cCCCEEEEEcCCCcCC
Q 028260          109 ---FGAD---V--IMTS-------------------ESCRNGTERCNEALQ------KLE-KKYDIVVNIQGDEPLI  151 (211)
Q Consensus       109 ---~~v~---v--i~~~-------------------~~~~g~~~si~~al~------~l~-~~~d~vlv~~~D~Pli  151 (211)
                         +|++   +  +...                   .....|+.+++.++.      .+. ...++++|+.+|.++.
T Consensus       181 ~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~  257 (505)
T 1jv1_A          181 HKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILV  257 (505)
T ss_dssp             TGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTC
T ss_pred             hhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCcccc
Confidence               4542   3  2211                   112233334444433      221 1358999999999866

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*

Probab=98.52  E-value=5.4e-07  Score=82.59  Aligned_cols=58  Identities=12%  Similarity=0.123  Sum_probs=47.0

Q ss_pred             cEEEEEecCCCCCCCC---CccccccC-CeehHHHHHHHHHcCC-----CCCeEEEEcC---cHHHHHHHH
Q 028260           49 RVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLAT-----TLDHLVVATD---DEKIAECCQ  107 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg---~K~ll~l~-GkpLl~~~i~~l~~~~-----~id~IVVvt~---~e~i~~~~~  107 (211)
                      ++.+||||||.|+||+   +|++++++ |+|+|++.++++...+     .+ ++++.+.   ++.+.++++
T Consensus        75 k~avViLAGGlGTRLg~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~i-p~viMtS~~t~e~t~~~f~  144 (505)
T 2oeg_A           75 STVVLKLNGGLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHL-RFMLMDSFNTSASTKSFLK  144 (505)
T ss_dssp             TEEEEEEECCCCGGGTCCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTC-EEEEEECHHHHHHHHHHHH
T ss_pred             cceEEEEcCCcccccCCCCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCc-CEEEEeCCCCHHHHHHHHh
Confidence            6889999999999997   69999999 9999999999998753     13 4555553   466777765

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}

Probab=98.48  E-value=2.4e-06  Score=76.22  Aligned_cols=105  Identities=22%  Similarity=0.228  Sum_probs=69.4

Q ss_pred             cEEEEEecCCCCCCCC---Ccccccc---CCeehHHHHHHHHHc------------CCCCCeEEEEcC--cHHHHHHHHH
Q 028260           49 RVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKL------------ATTLDHLVVATD--DEKIAECCQQ  108 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg---~K~ll~l---~GkpLl~~~i~~l~~------------~~~id~IVVvt~--~e~i~~~~~~  108 (211)
                      ++.+|+||||.|+|||   +|.++++   .|+|++++.++++++            ...+..++.++.  ++.+.+++++
T Consensus        35 kvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~~~f~~  114 (405)
T 3oc9_A           35 KTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEINNYFKE  114 (405)
T ss_dssp             CEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHHHHHHH
T ss_pred             ceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHHHHHHh
Confidence            6889999999999997   5999999   899999999998864            124654444443  5777787764


Q ss_pred             ---cCCe---Ee--eC-------------------CcccCCChHHHHHHHH------hhc-cCCCEEEEEcCCCcCCCH
Q 028260          109 ---FGAD---VI--MT-------------------SESCRNGTERCNEALQ------KLE-KKYDIVVNIQGDEPLIEP  153 (211)
Q Consensus       109 ---~~v~---vi--~~-------------------~~~~~g~~~si~~al~------~l~-~~~d~vlv~~~D~Pli~~  153 (211)
                         +|.+   +.  ..                   ....+.|...++.+|.      .+. ..-+++++...|.++...
T Consensus       115 ~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~~  193 (405)
T 3oc9_A          115 HQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKD  193 (405)
T ss_dssp             TGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCCS
T ss_pred             CcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCccccc
Confidence               3442   21  10                   0112234434444443      221 235799999999988744

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*

Probab=98.37  E-value=2.7e-06  Score=77.69  Aligned_cols=60  Identities=15%  Similarity=0.125  Sum_probs=47.9

Q ss_pred             cEEEEEecCCCCCCCC---CccccccC---CeehHHHHHHHHHcCC-------------CCCeEEEEcC--cHHHHHHHH
Q 028260           49 RVVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLAT-------------TLDHLVVATD--DEKIAECCQ  107 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg---~K~ll~l~---GkpLl~~~i~~l~~~~-------------~id~IVVvt~--~e~i~~~~~  107 (211)
                      ++.+||||||.|+|||   +|++++++   |+|+|++.++++...+             .+..++.+++  ++.+.++++
T Consensus       103 kvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~~~  182 (486)
T 2yqc_A          103 EVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESFFI  182 (486)
T ss_dssp             CEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHHHH
T ss_pred             CeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHHHHHHh
Confidence            5789999999999997   69999999   9999999999998752             2555555554  466777775


Q ss_pred             H
Q 028260          108 Q  108 (211)
Q Consensus       108 ~  108 (211)
                      +
T Consensus       183 ~  183 (486)
T 2yqc_A          183 E  183 (486)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}

Probab=98.07  E-value=1.4e-05  Score=66.51  Aligned_cols=97  Identities=20%  Similarity=0.204  Sum_probs=65.4

Q ss_pred             eehHHHHHHHHHcCCCCCeEEEEcCcHHHHHH--HHHcCCeEeeCCcccCCChHHHHHHHHhh-ccCCCEEEEEcCCCcC
Q 028260           74 KPMIQRTWERSKLATTLDHLVVATDDEKIAEC--CQQFGADVIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPL  150 (211)
Q Consensus        74 kpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~--~~~~~v~vi~~~~~~~g~~~si~~al~~l-~~~~d~vlv~~~D~Pl  150 (211)
                      ++|++++++.+.+. ..+.++++++++....+  ..-.+..+..+++...|..+++.+|++.+ ....+.++++.+|+|+
T Consensus        37 ~~ll~~tl~~~~~~-~~~~vvvvt~~~~~~~~~~~~~~~~~~~~~~q~~~gLg~rl~~a~~~~~~~~~~~vliigaD~P~  115 (242)
T 3cgx_A           37 RHFVQDMLQGLARL-HADLHICYVPGDADLPEKFKAWLGPQHMFAAQQGLDLGERMKHAMQKAFDDGYDRVVLMGSDIPD  115 (242)
T ss_dssp             HHHHHHHHHHHTTS-SSEEEEEECCCCTTHHHHHHHHHCTTSEEEECCSSSHHHHHHHHHHHHHHTTCSEEEEECSSCTT
T ss_pred             HHHHHHHHHHHHhC-CCCEEEEEcCCchhhhhhhhhhccCCcEEecCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCCCCC
Confidence            69999999999987 46666677653221111  11123233333333334457899998876 3346789999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCeEEE
Q 028260          151 IEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       151 i~~~~i~~li~~~~~~~d~vv~  172 (211)
                      +++++|+++++++.+ .+.+++
T Consensus       116 L~~~~l~~a~~~l~~-~d~Vig  136 (242)
T 3cgx_A          116 YPCELVQKALNDLQH-YDAAIG  136 (242)
T ss_dssp             CCHHHHHHHHHHTTT-CSEEEE
T ss_pred             CCHHHHHHHHHHhcc-CCeEEE
Confidence            999999999998765 455554

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=97.00  E-value=0.0083  Score=48.30  Aligned_cols=105  Identities=14%  Similarity=0.196  Sum_probs=68.2

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCC-eEEEEcC--cHHHHHHHHHc----CCeEeeCCc--
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQF----GADVIMTSE--  118 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id-~IVVvt~--~e~i~~~~~~~----~v~vi~~~~--  118 (211)
                      |++++|||+-              +....|..+++.+.+...-+ +|+|+-|  .+...++++++    .+.++..+.  
T Consensus         1 p~vSViIp~y--------------n~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~   66 (255)
T 1qg8_A            1 PKVSVIMTSY--------------NKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISG   66 (255)
T ss_dssp             CCEEEEEEES--------------SCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCS
T ss_pred             CeEEEEEEcC--------------CCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEeccccc
Confidence            4567777763              34567888888887643222 5666654  35555555554    445454431  


Q ss_pred             -----ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCe
Q 028260          119 -----SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA  169 (211)
Q Consensus       119 -----~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~  169 (211)
                           .-.|...+...|++..  +.|+++++++|. .+.++.+..+++.+.++++.
T Consensus        67 ~~~~~~n~G~~~a~N~gi~~a--~g~~i~~lD~Dd-~~~~~~l~~~~~~~~~~~~~  119 (255)
T 1qg8_A           67 VKERTEKTRYAALINQAIEMA--EGEYITYATDDN-IYMPDRLLKMVRELDTHPEK  119 (255)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHC--CCSEEEEEETTE-EECTTHHHHHHHHHHHCTTC
T ss_pred             ccccccccCHHHHHHHHHHHc--CCCEEEEeCCCC-ccChHHHHHHHHHHHhCCCc
Confidence                 1123334566788876  579999999999 57899999999999765443

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=96.95  E-value=0.017  Score=45.82  Aligned_cols=107  Identities=18%  Similarity=0.233  Sum_probs=69.1

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCC-eEEEEcC--cH----HHHHHHHHc-CCeEeeCCc
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HLVVATD--DE----KIAECCQQF-GADVIMTSE  118 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id-~IVVvt~--~e----~i~~~~~~~-~v~vi~~~~  118 (211)
                      ++++.+|||+-              +....|..+|+.+.+...-+ +|+|+-|  .+    .++++..+. .+.++. . 
T Consensus         4 ~p~vsViIp~y--------------n~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~-~-   67 (240)
T 3bcv_A            4 IPKVSVIVPIY--------------NVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIH-K-   67 (240)
T ss_dssp             CCSEEEEEEES--------------SCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEE-C-
T ss_pred             CCcEEEEEecC--------------CCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEE-C-
Confidence            35688888874              33467788888887643222 5666654  22    233343333 344443 2 


Q ss_pred             ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEE
Q 028260          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFS  172 (211)
Q Consensus       119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~  172 (211)
                      .-.|...+...|++..  +.|+++++++|. .+.++.++.+++.+.+ +.+.+++
T Consensus        68 ~n~G~~~a~N~g~~~a--~g~~i~~lD~Dd-~~~~~~l~~l~~~~~~~~~~~v~~  119 (240)
T 3bcv_A           68 KNAGLGMACNSGLDVA--TGEYVAFCDSDD-YVDSDMYMTMYNVAQKYTCDAVFT  119 (240)
T ss_dssp             CCCCHHHHHHHHHHHC--CSSEEEECCTTC-CCCTTHHHHHHHHHHHHTCSEEEC
T ss_pred             CCCChHHHHHHHHHHc--CCCEEEEECCCC-cCCHHHHHHHHHHHHhcCCCEEEE
Confidence            2334456677888887  579999999998 7899999999999865 5565543

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A

Probab=96.89  E-value=0.011  Score=50.39  Aligned_cols=111  Identities=19%  Similarity=0.123  Sum_probs=74.0

Q ss_pred             CCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCC--CCCeEEEEcC--cHHHHHHHHHcCCeEee------
Q 028260           46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT--TLDHLVVATD--DEKIAECCQQFGADVIM------  115 (211)
Q Consensus        46 ~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~--~id~IVVvt~--~e~i~~~~~~~~v~vi~------  115 (211)
                      .++++.+|||+-              +....|..+++.+.+..  ...+|+|+-|  .+...+++++++.++..      
T Consensus        46 ~~~~vSViIp~y--------------N~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~~~~~~~~~~~  111 (329)
T 3ckj_A           46 AGRTISVVLPAL--------------DEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALP  111 (329)
T ss_dssp             TTCCEEEEEEES--------------SCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCT
T ss_pred             cCCcEEEEEeeC--------------CCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhhhhccceeeec
Confidence            346788888884              33456778888887542  2357777764  35556667777665422      


Q ss_pred             CCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC--CCeEEE
Q 028260          116 TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA--PDAVFS  172 (211)
Q Consensus       116 ~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~d~vv~  172 (211)
                      ..+.-.|...++..|++..  +.|+++++++|.-.+.++.+..+++.+.++  .+.+++
T Consensus       112 ~~~~n~G~~~a~n~g~~~a--~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g  168 (329)
T 3ckj_A          112 EVPIRPGKGEALWRSLAAS--RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKS  168 (329)
T ss_dssp             TSCCCCSHHHHHHHHHHHC--CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEE
T ss_pred             cCCCCCCHHHHHHHHHHhC--CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEE
Confidence            1222234456677888877  579999999999547899999999987544  344444

>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*

Probab=96.77  E-value=0.0012  Score=61.73  Aligned_cols=63  Identities=10%  Similarity=0.048  Sum_probs=49.1

Q ss_pred             cEEEEEecCCCCCCCC---CccccccC---CeehHHHHHHHHHcCCCC-CeEEEEcC---cHHHHHHHHHcCC
Q 028260           49 RVVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLATTL-DHLVVATD---DEKIAECCQQFGA  111 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg---~K~ll~l~---GkpLl~~~i~~l~~~~~i-d~IVVvt~---~e~i~~~~~~~~v  111 (211)
                      ++.+|+||||.|+|||   +|.+++++   |+++++..++++.+..+. -.++|.|+   ++...+++++|+.
T Consensus       114 kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~fgl  186 (630)
T 3ogz_A          114 KTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQL  186 (630)
T ss_dssp             GEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHHTTC
T ss_pred             hceEEEecCCcccccCCCCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHHhCC
Confidence            7889999999999998   59999996   999999999999853221 24555553   5777788877764

>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A

Probab=96.74  E-value=0.0013  Score=60.33  Aligned_cols=63  Identities=14%  Similarity=0.172  Sum_probs=47.7

Q ss_pred             CCCCcEEEEEecCCCCCCCC---CccccccC-CeehHHHHHHHHHcC----C-CCCeEEEEcC---cHHHHHHHHH
Q 028260           45 NFRSRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLA----T-TLDHLVVATD---DEKIAECCQQ  108 (211)
Q Consensus        45 ~~~m~i~aIIlA~G~ssRlg---~K~ll~l~-GkpLl~~~i~~l~~~----~-~id~IVVvt~---~e~i~~~~~~  108 (211)
                      ....++.+|+||||.|+|||   +|.++++. |+++++..+++++..    + .+ .++|.|+   ++...+++++
T Consensus       123 ~~l~kvavvlLaGGlGTRLG~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~I-Pl~IMTS~~T~~~T~~~f~k  197 (528)
T 3r3i_A          123 SVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDV-PLVLMNSFNTDEDTKKILQK  197 (528)
T ss_dssp             TTCTTEEEEEECCCBCTTTTCSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCC-CEEEEECTTTHHHHHSSCGG
T ss_pred             hhcCceEEEEeCCCCccccCCCCCccceecCCCCcHHHHHHHHHHHHHHHhCCCC-CEEEEeccchhHHHHHHHHh
Confidence            45568999999999999997   59999995 999999999999864    2 24 4455553   4556665554

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}

Probab=96.64  E-value=0.018  Score=55.32  Aligned_cols=105  Identities=18%  Similarity=0.267  Sum_probs=72.3

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCe-ehHHHHHHHHHcCCCCC---eEEEEcCc---------------------HHH
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGK-PMIQRTWERSKLATTLD---HLVVATDD---------------------EKI  102 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~Gk-pLl~~~i~~l~~~~~id---~IVVvt~~---------------------e~i  102 (211)
                      +++.++||+-              ++. .+++.+++.+.+...-+   +|+|+.|.                     +.+
T Consensus       140 P~VSViIPty--------------Ne~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l  205 (802)
T 4hg6_A          140 PTVDILVPSY--------------NEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRREL  205 (802)
T ss_dssp             CCEEEEEECT--------------TCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEEC--------------CCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHH
Confidence            3567777773              223 46688999997654332   57777752                     123


Q ss_pred             HHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCe
Q 028260          103 AECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA  169 (211)
Q Consensus       103 ~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~  169 (211)
                      +++++++++.++..++...|....+..|++..  +.|+++++|+|. .++++.++++++.+.++++.
T Consensus       206 ~~~~~~~~v~~i~~~~~~~GKa~alN~gl~~a--~gd~Il~lDaD~-~~~pd~L~~lv~~~~~dp~v  269 (802)
T 4hg6_A          206 QQLCRELGVVYSTRERNEHAKAGNMSAALERL--KGELVVVFDADH-VPSRDFLARTVGYFVEDPDL  269 (802)
T ss_dssp             HHHHHHHTCEEEECSSCCSHHHHHHHHHHHHC--CCSEEEECCTTE-EECTTHHHHHHHHHHHSSSC
T ss_pred             HHHHHhcCcEEEEecCCCCcchHHHHHHHHhc--CCCEEEEECCCC-CcChHHHHHHHHHHhcCCCe
Confidence            44456678877766544333345677888887  589999999999 67999999999999655553

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=96.53  E-value=0.019  Score=51.12  Aligned_cols=109  Identities=7%  Similarity=0.046  Sum_probs=73.2

Q ss_pred             CCCcEEEEEecCCCCCCCCCccccccCCe-ehHHHHHHHHHcCCCC---CeEEEEcC---cHH----HHHHHHHcC--Ce
Q 028260           46 FRSRVVGIIPARFASSRFEGKPLVNILGK-PMIQRTWERSKLATTL---DHLVVATD---DEK----IAECCQQFG--AD  112 (211)
Q Consensus        46 ~~m~i~aIIlA~G~ssRlg~K~ll~l~Gk-pLl~~~i~~l~~~~~i---d~IVVvt~---~e~----i~~~~~~~~--v~  112 (211)
                      .+|++.+||++-              +.. ..|..+++.+.+...-   .+|+|+-|   +++    +++++++++  +.
T Consensus        27 ~~p~vSVIIp~y--------------N~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~   92 (472)
T 1xhb_A           27 NLPTTSVVIVFH--------------NEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVH   92 (472)
T ss_dssp             CCCCEEEEEEES--------------SCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEE
T ss_pred             CCCCeEEEEEeC--------------CCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEE
Confidence            456788888874              334 6778888888764322   27777754   222    334444444  45


Q ss_pred             EeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          113 VIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       113 vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      ++..++. .|...+...|++..  ..|+++++++|. .++++.+..+++.+.++++.+++
T Consensus        93 vi~~~~n-~G~~~a~N~g~~~A--~gd~i~flD~D~-~~~p~~L~~ll~~~~~~~~~~v~  148 (472)
T 1xhb_A           93 VIRMEQR-SGLIRARLKGAAVS--RGQVITFLDAHC-ECTAGWLEPLLARIKHDRRTVVC  148 (472)
T ss_dssp             EEECSSC-CCHHHHHHHHHHHC--CSSEEEEEESSE-EECTTCHHHHHHHHHHCTTEEEE
T ss_pred             EEECCCC-CChHHHHHHHHHhc--cCCeEEEECCCe-EeCccHHHHHHHHHHhCCCEEEE
Confidence            5544322 35455677788877  579999999998 58999999999999877666554

>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}

Probab=96.39  E-value=0.0041  Score=56.48  Aligned_cols=59  Identities=8%  Similarity=0.080  Sum_probs=45.6

Q ss_pred             cEEEEEecCCCCCCCC---Ccccccc-CCeehHHHHHHHHHcCC-----CCCeEEEEcC---cHHHHHHHHH
Q 028260           49 RVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLAT-----TLDHLVVATD---DEKIAECCQQ  108 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg---~K~ll~l-~GkpLl~~~i~~l~~~~-----~id~IVVvt~---~e~i~~~~~~  108 (211)
                      ++.+|+||||.|+|||   +|.++++ .|+++++..+++++...     .+ .++|.|+   ++...+++++
T Consensus        76 kvavvlLaGGlGTRLG~~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~i-Pl~IMTS~~T~~~T~~~~~k  146 (484)
T 3gue_A           76 QAVVLKLNGGLGTGMGLNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNV-PFMLMNSFSTSGETKNFLRK  146 (484)
T ss_dssp             TEEEEEEECCCCGGGTCSSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCC-CEEEEECTTTHHHHHHHGGG
T ss_pred             hcEEEEEcCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCc-eEEEECCcchhHHHHHHHHh
Confidence            7889999999999997   5999999 79999999999887521     23 4556553   4666666653

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*

Probab=96.09  E-value=0.043  Score=48.27  Aligned_cols=111  Identities=18%  Similarity=0.254  Sum_probs=72.9

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHH----cCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCC---
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSK----LATTLDHLVVATD--DEKIAECCQQFGADVIMTS---  117 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~----~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~---  117 (211)
                      .+++.+|||+-..              ...|..+++.+.    +.+...+|+|+-|  .+...+++++++.+++...   
T Consensus        93 ~p~vSVVIP~yNe--------------~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgStD~T~~i~~~~~~~v~~~~~~~  158 (387)
T 3f1y_A           93 GLTVSAVLPSRNV--------------ADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAEVYSENELM  158 (387)
T ss_dssp             TCCEEEEEEESSC--------------TTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTT
T ss_pred             CCeEEEEEEcCCC--------------HHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCCccHHHHHHHhCchhcccceeE
Confidence            5789999998533              344455555553    3333457877765  3556677777777654321   


Q ss_pred             ---cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC--CCeEEEE
Q 028260          118 ---ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA--PDAVFST  173 (211)
Q Consensus       118 ---~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~d~vv~v  173 (211)
                         +.-.|...++..|++..  ..|+++++++|.-..+++.+..+++.+.++  .+.+++.
T Consensus       159 i~~~~n~G~g~A~n~G~~~A--~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~  217 (387)
T 3f1y_A          159 SGYGDAHGKGDAMWRALSVT--RGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAA  217 (387)
T ss_dssp             GGGCSCCSHHHHHHHHTTTC--CSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEE
T ss_pred             ecCCccCCHHHHHHHHHHhc--CCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEe
Confidence               11224345677788776  579999999999448999999999998654  4555553

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=96.06  E-value=0.039  Score=49.56  Aligned_cols=109  Identities=7%  Similarity=0.017  Sum_probs=70.9

Q ss_pred             CCCcEEEEEecCCCCCCCCCccccccCCee-hHHHHHHHHHcCCCCC---eEEEEcC---cHHHHHHHHHc-CCeEeeCC
Q 028260           46 FRSRVVGIIPARFASSRFEGKPLVNILGKP-MIQRTWERSKLATTLD---HLVVATD---DEKIAECCQQF-GADVIMTS  117 (211)
Q Consensus        46 ~~m~i~aIIlA~G~ssRlg~K~ll~l~Gkp-Ll~~~i~~l~~~~~id---~IVVvt~---~e~i~~~~~~~-~v~vi~~~  117 (211)
                      .+|++.+||++-              +... .|..+|+.+.+...-.   +|||+-|   ++.+....++. .+.++..+
T Consensus        64 ~~p~vSVIIp~y--------------N~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~~v~vi~~~  129 (501)
T 2ffu_A           64 DLPATSVVITFH--------------NEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRND  129 (501)
T ss_dssp             SCCCEEEEEEES--------------SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBTTEEEEECS
T ss_pred             CCCCEEEEEEeC--------------cCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCCCEEEEECC
Confidence            356788888874              2222 7788888876542222   7777754   33333333333 34544433


Q ss_pred             cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      + -.|...+...|++..  ..|+++++++|. .++++.+..+++.+.++++.+++
T Consensus       130 ~-n~G~~~A~N~G~~~A--~gd~i~flD~D~-~~~p~~L~~ll~~~~~~~~~vv~  180 (501)
T 2ffu_A          130 R-REGLMRSRVRGADAA--QAKVLTFLDSHC-ECNEHWLEPLLERVAEDRTRVVS  180 (501)
T ss_dssp             S-CCHHHHHHHHHHHHC--CSSEEEECCSSE-EECTTCHHHHHHHHHHCTTEEEE
T ss_pred             C-CcCHHHHHHHHHHhc--CCCEEEEECCCc-ccCccHHHHHHHHHHhCCCeEEE
Confidence            2 234445677788877  579999999999 57899999999999876665544

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=95.86  E-value=0.034  Score=51.14  Aligned_cols=108  Identities=10%  Similarity=0.093  Sum_probs=70.3

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCe-ehHHHHHHHHHcCCCCC---eEEEEcC---cHH----HHHHHHHc-CCeEe
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGK-PMIQRTWERSKLATTLD---HLVVATD---DEK----IAECCQQF-GADVI  114 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~Gk-pLl~~~i~~l~~~~~id---~IVVvt~---~e~----i~~~~~~~-~v~vi  114 (211)
                      ++++.+||++-              +.. ..|..+|+.+.+...-+   +|||+-|   ++.    ++++++++ .+.++
T Consensus       111 ~P~vSVIIp~y--------------Ne~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi  176 (570)
T 2d7i_A          111 LPNTSIIIPFH--------------NEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRIL  176 (570)
T ss_dssp             CCCEEEEEEES--------------SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEE
T ss_pred             CCCeEEEEEEC--------------CCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEE
Confidence            45677777774              333 57778888876543222   6777754   222    23333333 34555


Q ss_pred             eCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          115 MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       115 ~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      ..++ -.|...+...|++..  +.|+++++++|. .++++.+..+++.+.++++.+++
T Consensus       177 ~~~~-n~G~~~A~N~G~~~A--~gd~i~fLD~D~-~~~p~~L~~ll~~l~~~~~~vv~  230 (570)
T 2d7i_A          177 RTKK-REGLIRTRMLGASVA--TGDVITFLDSHC-EANVNWLPPLLDRIARNRKTIVC  230 (570)
T ss_dssp             ECSS-CCCHHHHHHHHHHHC--CSSEEEECCSSE-EECTTCSHHHHHHHHHCTTEEEE
T ss_pred             ECCC-CCCHHHHHHHHHHhc--CCCEEEEEcCCc-cccccHHHHHHHHHHhCCCEEEe
Confidence            4432 234455677788877  579999999999 56999999999999877776654

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=95.84  E-value=0.052  Score=49.94  Aligned_cols=108  Identities=18%  Similarity=0.168  Sum_probs=70.7

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCC--CCeEEEEcC--cHHHHHHHHHc----CCeEeeCCc
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATT--LDHLVVATD--DEKIAECCQQF----GADVIMTSE  118 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~--id~IVVvt~--~e~i~~~~~~~----~v~vi~~~~  118 (211)
                      ++++.+||++-              +....|..+++.+.....  -.+|+|+-|  .+...++++++    ++.++..+.
T Consensus        92 ~p~vsviIp~~--------------n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i~~~~  157 (625)
T 2z86_A           92 IDGLSIVIPTY--------------NRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQKD  157 (625)
T ss_dssp             CCCEEEEEEES--------------SCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEECC
T ss_pred             CCcEEEEEecC--------------CcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEEEeCC
Confidence            45788888874              334678888999886521  236666653  34455555554    344444332


Q ss_pred             ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEE
Q 028260          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF  171 (211)
Q Consensus       119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv  171 (211)
                      .-.|...+...|++..  +.|+++++++|. .++++.+..+++.+.++++..+
T Consensus       158 ~~~g~~~a~N~g~~~a--~g~~v~~lD~D~-~~~~~~l~~~~~~~~~~~~~~~  207 (625)
T 2z86_A          158 YGYQLCAVRNLGLRAA--KYNYVAILDCDM-APNPLWVQSYMELLAVDDNVAL  207 (625)
T ss_dssp             CSCCHHHHHHHHHHHC--CSSEEEEECTTE-EECTTHHHHHHHHHHHCTTEEE
T ss_pred             CCcchhHHHHHHHHhC--CcCEEEEECCCC-CCCHHHHHHHHHHHhcCCceEE
Confidence            2112335566788877  579999999999 5699999999999976555443

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=95.35  E-value=0.13  Score=47.30  Aligned_cols=93  Identities=14%  Similarity=0.175  Sum_probs=59.7

Q ss_pred             CCeehHHHHHHHHHcCCCCC-eEEEEcC--cHHHHHHHHH----c-CCeEeeCCcccCCChHHHHHHHHhhccCCCEEEE
Q 028260           72 LGKPMIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQ----F-GADVIMTSESCRNGTERCNEALQKLEKKYDIVVN  143 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~id-~IVVvt~--~e~i~~~~~~----~-~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv  143 (211)
                      ++...|..+|+.+.+....+ +|+|+-|  .+...+++++    . .+.++.  +.-.|...+...|++..  ..|++++
T Consensus       385 n~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~~~--~~n~G~~~a~n~g~~~a--~g~~i~~  460 (625)
T 2z86_A          385 NCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRFIS--QKNKGIGSASNTAVRLC--RGFYIGQ  460 (625)
T ss_dssp             SCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEEE--ECCCCHHHHHHHHHHHC--CSSEEEE
T ss_pred             CCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCCcEEEEe--CCCCCHHHHHHHHHHhc--CCCEEEE
Confidence            44567888888887643323 5666543  2223333332    2 234442  22234456677888877  5799999


Q ss_pred             EcCCCcCCCHHHHHHHHHHHHhCCCe
Q 028260          144 IQGDEPLIEPEIIDGVVKALQAAPDA  169 (211)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~~~~~d~  169 (211)
                      +++|. .+.++.+..+++.+.++++.
T Consensus       461 ld~D~-~~~~~~l~~~~~~~~~~~~~  485 (625)
T 2z86_A          461 LDSDD-FLEPDAVELCLDEFRKDLSL  485 (625)
T ss_dssp             CCTTC-EECTTHHHHHHHHHHHCTTC
T ss_pred             ECCCc-ccChhHHHHHHHHHHhCCCe
Confidence            99998 67999999999988665544

>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*

Probab=95.33  E-value=0.052  Score=51.06  Aligned_cols=103  Identities=9%  Similarity=0.097  Sum_probs=64.9

Q ss_pred             cCCeehHHHHHHHHHcCC----CCCeEEEEcCc-------HHHHHHHHHc--CCeEeeCCcccCCChHHHHHHHHhhcc-
Q 028260           71 ILGKPMIQRTWERSKLAT----TLDHLVVATDD-------EKIAECCQQF--GADVIMTSESCRNGTERCNEALQKLEK-  136 (211)
Q Consensus        71 l~GkpLl~~~i~~l~~~~----~id~IVVvt~~-------e~i~~~~~~~--~v~vi~~~~~~~g~~~si~~al~~l~~-  136 (211)
                      +++...|...|+.+.+..    ...+|||+-|.       +.+.++++..  .+.++..+  -.|...+...|++.+.. 
T Consensus       189 YN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~--N~G~a~a~N~Gl~~A~g~  266 (657)
T 4fix_A          189 FNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP--NLGGSGGYSRVMYEALKN  266 (657)
T ss_dssp             SSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC--CCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECC--CCCHHHHHHHHHHHHHhc
Confidence            466678888898887642    23467776541       1344444433  34444432  23444556667776532 


Q ss_pred             -CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCC-eEEEEeee
Q 028260          137 -KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD-AVFSTAVT  176 (211)
Q Consensus       137 -~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d-~vv~v~~~  176 (211)
                       +.|++++++.|. .+.++.+..+++.+..+++ .+++....
T Consensus       267 ~~~dyIlfLD~D~-~~~pd~L~~ll~~l~~~~~~~~vg~~il  307 (657)
T 4fix_A          267 TDCQQILFMDDDI-RLEPDSILRVLAMHRFAKAPMLVGGQML  307 (657)
T ss_dssp             CCCSEEEEECSSE-EECTHHHHHHHHHHHHBSSCCEEEEEEE
T ss_pred             CCCCEEEEECCCC-ccChhHHHHHHHHHHhCCCcEEEEeEEe
Confidence             478999999999 7889999999999976544 34443333

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*

Probab=94.33  E-value=0.34  Score=42.78  Aligned_cols=51  Identities=16%  Similarity=0.130  Sum_probs=40.2

Q ss_pred             CCChHHHHHHH----HhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEE
Q 028260          121 RNGTERCNEAL----QKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST  173 (211)
Q Consensus       121 ~g~~~si~~al----~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v  173 (211)
                      .|...++..|+    +..  +.|+++++++|.--.+++.+.++++.+.++.|.+++.
T Consensus        74 ~GkG~Al~~G~~~Al~~a--~gd~vv~mDADlq~~~P~~i~~Ll~~l~~g~D~V~g~  128 (397)
T 2bo4_A           74 PGKGDGMNTALRYFLEET--QWERIHFYDADITSFGPDWITKAEEAADFGYGLVRHY  128 (397)
T ss_dssp             SSHHHHHHHHHHHHHHHC--CCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence            45567788888    554  5799999999974468999999999887667877764

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*

Probab=89.86  E-value=0.06  Score=50.80  Aligned_cols=107  Identities=14%  Similarity=0.161  Sum_probs=0.0

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCC-CCeEEEEcC--cHHHHHHH----HHcC--CeEeeCC
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECC----QQFG--ADVIMTS  117 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~-id~IVVvt~--~e~i~~~~----~~~~--v~vi~~~  117 (211)
                      ||++++|||+-.              +...|..+|+.+.+... --+|+|+-|  .+...+++    ++++  +.++..+
T Consensus         1 Mp~vSVIIp~yN--------------~~~~L~~~L~Sll~Qt~~~~EIIVVDDgStD~t~~il~~~~~~~~~~i~~i~~~   66 (729)
T 3l7i_A            1 MNKLTIIVTYYN--------------AEEYITGCLESIKQQRTQDFNLIIVNDGSTDQSKKLMDEAIKDYDKNIRFIDLD   66 (729)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEEEEEEcCC--------------CHHHHHHHHHHHHhCCCCCeEEEEEECCCCCcHHHHHHHHHHhCCCCEEEEECC
Confidence            456777777643              33445555555543321 114555543  23333333    3323  4444332


Q ss_pred             cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      + -.|...+...|++..  +.++++++++|. .+.++.++.+++.+. +.+.+++
T Consensus        67 ~-n~G~~~arN~gi~~A--~gdyI~flD~Dd-~~~p~~l~~l~~~l~-~~d~v~~  116 (729)
T 3l7i_A           67 E-NSGHAHARNIALEEV--ETPYFMFLDADD-ELASYAITFYLEKFN-NTDGLIA  116 (729)
T ss_dssp             -------------------------------------------------------
T ss_pred             C-CCCHHHHHHHHHHhc--cCCEEEEECCCC-CCChhHHHHHHHHhc-CCCEEEE
Confidence            2 234445566778776  478999999999 568999999999887 4555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d1h7ea_	245	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	9e-30
d1vica_	255	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	8e-28
d1vh1a_	246	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	3e-25
d2dpwa1	231	c.68.1.19 (A:1-231) Uncharacterized protein TTHA01	4e-22
d1qwja_	228	c.68.1.13 (A:) CMP acylneuraminate synthetase {Mou	5e-15
d1eyra_	225	c.68.1.13 (A:) CMP acylneuraminate synthetase {Nei	2e-13
d1g97a2	250	c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate	5e-08
d1e5ka_	188	c.68.1.8 (A:) Molybdenum cofactor biosynthesis pro	7e-08
d1vpaa_	221	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	3e-06
d1vgwa_	226	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	6e-06
d2oi6a2	248	c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate	2e-05
d1i52a_	225	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	4e-05
d1lvwa_	295	c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri	1e-04
d1w55a1	205	c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme,	2e-04
d1w77a1	226	c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-	2e-04

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

 Score =  108 bits (270), Expect = 9e-30
 Identities = 59/155 (38%), Positives = 95/155 (61%), Gaps = 2/155 (1%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ V +IPAR+ SSR  GKPL++I+GKPMIQ  +ER+     +  + VATDD ++ +  Q
Sbjct: 1   SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQ 60

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
            FG   IMT     +GT+R  E + K+  + DI +N+QGDEP+I P  ++ +++ ++  P
Sbjct: 61  AFGGKAIMTRNDHESGTDRLVEVMHKV--EADIYINLQGDEPMIRPRDVETLLQGMRDDP 118

Query: 168 DAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF 202
               +T   ++   +A +P+ VK VV+    A+YF
Sbjct: 119 ALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYF 153

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} Length = 255

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

 Score =  103 bits (257), Expect = 8e-28
 Identities = 75/163 (46%), Positives = 103/163 (63%), Gaps = 2/163 (1%)

Query: 50  VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
              IIPARFASSR  GKPL +I GKPMIQ  +E++   +    +++ATD+E +A+  + F
Sbjct: 2   FTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKAL-QSGASRVIIATDNENVADVAKSF 60

Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
           GA+V MTS +  +GTER  E ++KL    + I+VNIQGDEPLI P I+  V   L     
Sbjct: 61  GAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNV 120

Query: 169 AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
            + S AV     E+ F+PN VK + D  GY +YFSR +IPY++
Sbjct: 121 NMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 163

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

 Score = 96.7 bits (239), Expect = 3e-25
 Identities = 70/163 (42%), Positives = 99/163 (60%), Gaps = 2/163 (1%)

Query: 50  VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  
Sbjct: 2   FVVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAA 60

Query: 110 GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
           G +V MT    ++GTER  E ++K       ++VN+QGDEP+I   II  V   L     
Sbjct: 61  GGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQV 120

Query: 169 AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
            + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++
Sbjct: 121 GMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 163

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

 Score = 88.0 bits (217), Expect = 4e-22
 Identities = 27/172 (15%), Positives = 46/172 (26%), Gaps = 25/172 (14%)

Query: 49  RVVGIIPARFASSRFE-----GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA 103
           R   I+ A    +  E      K LV   G+PM++   E          L  A       
Sbjct: 2   RPSAIVLAGGKEAWAERFGVGSKALVPYRGRPMVEWVLEA---------LYAAGLSPVYV 52

Query: 104 ECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163
                      +T        E   +AL+ +      V+   GD P +  E +  V+   
Sbjct: 53  GENPGLVPAPALTLPDRGGLLENLEQALEHV---EGRVLVATGDIPHLTEEAVRFVLDKA 109

Query: 164 QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN-----HGYAIYFSRGLIPYN 210
             A        +   +  +A  P   +           G  +      +   
Sbjct: 110 PEAALVY---PIVPKEAVEARFPRTKRTYARLREGTFTGGNLLLLDKSLFRK 158

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.9 bits (167), Expect = 5e-15
 Identities = 19/82 (23%), Positives = 33/82 (40%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
            +  ++ AR  S     K +  + G P+I      +  A     + V+TD ++I    +Q
Sbjct: 3   HLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQ 62

Query: 109 FGADVIMTSESCRNGTERCNEA 130
           FGA V   S      +    +A
Sbjct: 63  FGAQVHRRSSETSKDSSTSLDA 84

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

 Score = 64.8 bits (156), Expect = 2e-13
 Identities = 19/80 (23%), Positives = 35/80 (43%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           + + +I AR  S     K L  + G  ++  T   +  +   D ++V+TD   IAE  + 
Sbjct: 4   QNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKN 63

Query: 109 FGADVIMTSESCRNGTERCN 128
           FG +V++      + T    
Sbjct: 64  FGVEVVLRPAELASDTASSI 83

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 49.3 bits (116), Expect = 5e-08
 Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 4/113 (3%)

Query: 53  IIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
           II A    +R +    K L  + G  M++  +         +  V     +         
Sbjct: 5   IILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAI-QPEKTVTVVGHKAELVEEVLA 63

Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 162
           G    +T                 LE      + I GD PLI  E +  ++  
Sbjct: 64  GQTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDF 116

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

 Score = 48.5 bits (114), Expect = 7e-08
 Identities = 18/124 (14%), Positives = 39/124 (31%), Gaps = 7/124 (5%)

Query: 48  SRVVGIIPARFASSRFEG--KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC 105
           + + G++ A   + R  G  K L+ + GKP+ Q   +      +   +      E     
Sbjct: 2   TTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEIYQAS 61

Query: 106 CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165
             +   D +                    ++  +  +    D P I P++   +    + 
Sbjct: 62  GLKVIEDSL-----ADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKD 116

Query: 166 APDA 169
           AP  
Sbjct: 117 APVV 120

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 12/111 (10%), Positives = 31/111 (27%), Gaps = 5/111 (4%)

Query: 51  VGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLD--HLVVATDDEKIAEC 105
           V I+ A     R      K  + I G+ + +        +  +D   +V   +  ++ E 
Sbjct: 5   VAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEK 64

Query: 106 CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEII 156
                  + +            +      +     V+      P +  + +
Sbjct: 65  RVFHEKVLGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHV 115

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 10/172 (5%)

Query: 49  RVVGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLD--HLVVATDDEKIA 103
           + + +IPA     RF     K  V I  K +++      +    +D   +VV+ +D    
Sbjct: 3   KNIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFAD 62

Query: 104 ECCQQFGADVIMTSESCRNGTERCNEAL----QKLEKKYDIVVNIQGDEPLIEPEIIDGV 159
           +    F    +  +          N         L  + D ++        +  E +  +
Sbjct: 63  KVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARL 122

Query: 160 VKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
           ++    A +        +       +  ++   VD  G     +  L     
Sbjct: 123 IEQAGNAAEGGILAVPVA-DTLKRAESGQISATVDRSGLWQAQTPQLFQAGL 173

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 22/162 (13%), Positives = 48/162 (29%), Gaps = 12/162 (7%)

Query: 53  IIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
           +I A    +R      K L  + GK M+Q   + +       H+ +              
Sbjct: 6   VILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANEL-GAAHVHLVYGHGGDLLKQALK 64

Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
             ++    ++ + GT    +         + ++ + GD PLI  E +  +  A       
Sbjct: 65  DDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGGIG 124

Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
           + +            DP     +   +G            ++
Sbjct: 125 LLTV--------KLDDPTGYGRITRENGKVTGIVEHKDATDE 158

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 13/116 (11%), Positives = 34/116 (29%), Gaps = 3/116 (2%)

Query: 49  RVVGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC 105
            V  ++PA     R +    K  ++I  + +++ +         +  +V+A         
Sbjct: 3   DVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFA 62

Query: 106 CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 161
                    +T     +       A  K       V+      P +  + +  ++ 
Sbjct: 63  QLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLA 118

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 34/166 (20%), Positives = 50/166 (30%), Gaps = 24/166 (14%)

Query: 52  GIIPARFASSRFEG------KPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIA 103
           GI+ A  + +R         K L+ I  KPMI        LA   D L+++T  D     
Sbjct: 6   GIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYR 65

Query: 104 ECCQ---QFGADVIMTSESCRNGTERCNEALQKLEKKY--DIVVNIQGDEPLIEPEIIDG 158
           +      QFG       +    G     +A    +       V  + GD         + 
Sbjct: 66  DLLGDGSQFGVRFSYRVQEEPRGIA---DAFIVGKDFIGDSKVALVLGDNVFYGHRFSEI 122

Query: 159 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVV-DNHGYAIYFS 203
           + +A      AV              DP     V  D+ G  I   
Sbjct: 123 LRRAASLEDGAVIFGYYVR-------DPRPFGVVEFDSEGRVISIE 161

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 19/151 (12%), Positives = 46/151 (30%), Gaps = 11/151 (7%)

Query: 53  IIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
           I+ A   S+RF     K  + +   P+     +          +VV + +    +   + 
Sbjct: 5   IMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKKFTKN 64

Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
              +        +  +             + V+       L+   + D +++ L  A   
Sbjct: 65  YEFIEGGDTRAESLKKALELI------DSEFVMVSDVARVLVSKNLFDRLIENLDKADCI 118

Query: 170 VFSTAV--TSLKPEDAFDPNRVKCVVDNHGY 198
             +  V  T+L   +A    ++K +      
Sbjct: 119 TPALKVADTTLFDNEALQREKIKLIQTPQIS 149

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 50  VVGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECC 106
           V  I+ A     R +    K  + +LG+P+   ++        +  +VV  D        
Sbjct: 5   VSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFE 64

Query: 107 QQFGADVIMTSESCRNGTERCNEALQ 132
           +   +  +    +      + +    
Sbjct: 65  EYEESIDVDLRFAIPGKERQDSVYSG 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.89
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	99.88
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.87
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.86
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.86
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	99.84
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.83
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	99.82
d1vpaa_	221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.81
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	99.79
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.79
d2dpwa1	231	Uncharacterized protein TTHA0179 {Thermus thermoph	99.76
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	99.71
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	99.64
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	99.64
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	99.6
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	99.6
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	99.57
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	99.55
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	99.44
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	99.33
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	97.4
d2icya2	378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	97.3
d1jv1a_	501	UDP-N-acetylglucosamine pyrophosphorylase {Human (	96.42
d2i5ea1	208	Hypothetical protein MM2497 {Methanosarcina mazei	96.39
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	96.36
d1qg8a_	255	Spore coat polysaccharide biosynthesis protein Sps	95.67
d2bo4a1	381	Mannosylglycerate synthase, MGS {Rhodothermus mari	92.3

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=99.89  E-value=2.6e-22  Score=164.56  Aligned_cols=159  Identities=43%  Similarity=0.695  Sum_probs=125.8

Q ss_pred             EEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHH
Q 028260           50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNE  129 (211)
Q Consensus        50 i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~  129 (211)
                      ..+||||+|.|+|+|+|+|+.++|+|||+|+++++++++ +++|+|+|+++++.++++++|.+++..++....+.+++..
T Consensus         2 ~i~iIpAR~gSkrip~KnL~~i~GkpLI~~~i~~a~~s~-i~~iiVsTd~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~   80 (246)
T d1vh1a_           2 FVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESG-AERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAE   80 (246)
T ss_dssp             CEEEEECCCCCC--CCTTTCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECC-----CHHHHHH
T ss_pred             EEEEEecCCCCcCCCCchhhhcCCccHHHHHHHHHHHcC-CCcEEEEecCccccchhhcccccceeecccccccchHHHH
Confidence            469999999999999999999999999999999999985 8999999999999999999999987766556666777777


Q ss_pred             HHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEeeecCCC
Q 028260          130 ALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       130 al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~~~~~  207 (211)
                      ++.... .+.+.++.+.+|.|+++++.++.+++.+... .+.+..+... .......+.+.++.+.+.+|++++|++...
T Consensus        81 ~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vk~v~~~~~~~~~~~~~~~  159 (246)
T d1vh1a_          81 VVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPI-HNAEEAFNPNAVKVVLDAEGYALYFSRATI  159 (246)
T ss_dssp             HHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEEC-CCHHHHTCTTSCEEEECTTSBEEEEESSCS
T ss_pred             HHHhhcccccceeeeeccccccchhhHHHHHhhhhcccccccccccccc-cchhcccCCCcceeeecccCcccccccccc
Confidence            776653 3578999999999999999999999988653 3444443321 122335566789999999999999999987


Q ss_pred             CCC
Q 028260          208 PYN  210 (211)
Q Consensus       208 ~~~  210 (211)
                      +++
T Consensus       160 ~~~  162 (246)
T d1vh1a_         160 PWD  162 (246)
T ss_dssp             SCC
T ss_pred             hhh
Confidence            765

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=99.88  E-value=3.9e-23  Score=167.80  Aligned_cols=143  Identities=16%  Similarity=0.219  Sum_probs=110.3

Q ss_pred             cEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc--CCeEeeCCcccCCC
Q 028260           49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF--GADVIMTSESCRNG  123 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~--~v~vi~~~~~~~g~  123 (211)
                      ++.+||||||+|+||+   +|+|++++|+|||+|+++++.+...++.|||++++.+..   +.+  .+.++..   ....
T Consensus         1 ~is~IILAaG~g~Rmg~~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~~~~~---~~~~~~~~~v~G---g~~r   74 (205)
T d1w55a1           1 EMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYM---KKFTKNYEFIEG---GDTR   74 (205)
T ss_dssp             CEEEEEECCSCCTTTCSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESCHHHH---HTTCSSSEEEEC---CSSH
T ss_pred             CeEEEEeCCccCeeCCcCCCceeEEECCEEHHHHHHHHHHhhcccccccccccccccc---cccccccccccc---ccch
Confidence            3789999999999998   499999999999999999999887889999988754322   233  2333321   0112


Q ss_pred             hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEe-eee-C-CCCCCCCCCCeEEEeCCCccEE
Q 028260          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA-VTS-L-KPEDAFDPNRVKCVVDNHGYAI  200 (211)
Q Consensus       124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~-~~~-~-~~~~~~d~~~~~~v~~~~~~~~  200 (211)
                      ..++++|++.+  +.+++++++||+||+++++++++++.+.++ ++++++. .++ + ...+++||+.+..+|+||+|..
T Consensus        75 ~~Sv~~gl~~~--~~~~VlIhd~~rP~i~~~~i~~li~~~~~~-~~~i~~~~~~dti~~~~~~~~R~~l~~~qTPQ~f~~  151 (205)
T d1w55a1          75 AESLKKALELI--DSEFVMVSDVARVLVSKNLFDRLIENLDKA-DCITPALKVADTTLFDNEALQREKIKLIQTPQISKT  151 (205)
T ss_dssp             HHHHHHHHTTC--CSSEEEEEETTCTTCCHHHHHHHHTTGGGC-SEEEEEECCCSCEEETTEEECGGGCCEECSCEEEEH
T ss_pred             hhhhhhhhhhh--hhcceeeeccCcccCcHHHHHHHHhhhhcc-cccccccccccccccccccccchheeeeecchhhhh
Confidence            46788899988  578999999999999999999999988765 5554433 333 1 1246899999999999998854

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=99.87  E-value=6.7e-21  Score=155.55  Aligned_cols=158  Identities=40%  Similarity=0.714  Sum_probs=128.8

Q ss_pred             cEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHH
Q 028260           49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCN  128 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~  128 (211)
                      |..+||||+|.|+|+++|+|++++|+|||+|+++++.+++.+++|+|+++++++...+..++.+++..++...++..++.
T Consensus         2 k~i~iIpAR~~SkRl~~Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (245)
T d1h7ea_           2 KAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLV   81 (245)
T ss_dssp             CEEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCHHHHHHHHHTTCEEEECCSCCSSHHHHHH
T ss_pred             CEEEEEcCCCCCcCCCCccccccCCccHHHHHHHHHHhCCCCCeEEEecccccchhhhhhcCceEEEecCccccccHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999998877666666677888


Q ss_pred             HHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCe-EEEEeeeeCCCCCCCCCCCeEEEeCCCccEEeeecCCC
Q 028260          129 EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA-VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       129 ~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~-vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~~~~~  207 (211)
                      .+++.+  +.|.++.+.+|.|+++...++.+++.+...... ...... ........+...++......+..++|.+...
T Consensus        82 ~~~~~~--~~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~  158 (245)
T d1h7ea_          82 EVMHKV--EADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCH-AISAAEAAEPSTVKVVVNTRQDALYFSRSPI  158 (245)
T ss_dssp             HHHHHS--CCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEE-EECHHHHTCTTSCEEEECTTCBEEEEESSCS
T ss_pred             HHHHhc--CCCEEEEecchhhhcccccchhhhhccccccccccccccc-ccccccccCCcceeeccchhhhhhhhhhhhh
Confidence            888887  478999999999999999999999988543322 222221 1111223445678888888888999887765


Q ss_pred             CC
Q 028260          208 PY  209 (211)
Q Consensus       208 ~~  209 (211)
                      .+
T Consensus       159 ~~  160 (245)
T d1h7ea_         159 PY  160 (245)
T ss_dssp             SC
T ss_pred             hh
Confidence            44

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.86  E-value=7.8e-21  Score=155.84  Aligned_cols=159  Identities=45%  Similarity=0.751  Sum_probs=126.7

Q ss_pred             EEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHH
Q 028260           50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNE  129 (211)
Q Consensus        50 i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~  129 (211)
                      +.+||||+|.|+|+|+|+|++++|+|||+|+++++.+++ +++|+|+|+++++..++++++..+....+....++.+...
T Consensus         2 ~~~iIpAR~gSkRlp~Knl~~i~GkpLI~~~i~~a~~s~-i~~IiVsTd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (255)
T d1vica_           2 FTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSG-ASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAE   80 (255)
T ss_dssp             CEEEEECCCCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCCSSCCHHHHHHH
T ss_pred             EEEEEecCCCCCCCCCchhhhhCCcCHHHHHHHHHHHCC-CCeEEEEcCCcccchhhhhhccccceeeeccCCcchhhHH
Confidence            579999999999999999999999999999999999984 8999999999999999999999887766555555655555


Q ss_pred             HHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEeeecCCC
Q 028260          130 ALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       130 al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~~~~~  207 (211)
                      +.+... .+.+.++.+.+|.|++++.+++.+++.+..+ .+....+. .........+.+.+..+.+.++++.+|++.+.
T Consensus        81 ~~~~~~~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  159 (255)
T d1vica_          81 VVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAV-KIHDAEELFNPNAVKVLTDKDGYVLYFSRSVI  159 (255)
T ss_dssp             HHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEE-ECCCHHHHTCTTSCEEEECTTSBEEEEESSCS
T ss_pred             HHHHhhccCCceEEEEecchhhhhhhhhhhhhhhcccccccccceee-eccchhhccCccceeeeeccCCcccccccccc
Confidence            555442 3567899999999999999999999988543 33333322 11222234456788999999999999999876


Q ss_pred             CCC
Q 028260          208 PYN  210 (211)
Q Consensus       208 ~~~  210 (211)
                      ++.
T Consensus       160 ~~~  162 (255)
T d1vica_         160 PYD  162 (255)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            653

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.86  E-value=1.3e-21  Score=159.62  Aligned_cols=149  Identities=17%  Similarity=0.219  Sum_probs=101.7

Q ss_pred             CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcCCeEeeCCcccC
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSESCR  121 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~v~vi~~~~~~~  121 (211)
                      .++++||||||+|+||+   +|+|++++|+|||+|+++++.+++.+++|+|++++..   ++++...++..+...   ..
T Consensus         3 k~i~~IIlAaG~GtRm~~~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~~~~~~~~~---~g   79 (226)
T d1w77a1           3 KSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFA---IP   79 (226)
T ss_dssp             TCEEEEEECCC-------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTTTSCSSEEEEE---CC
T ss_pred             CceEEEEeCCccCccCcCCCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhhhhhhhccccccccccccc---cc
Confidence            35889999999999997   5999999999999999999999888899999997532   222222333333221   11


Q ss_pred             CC--hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-CC-------CCCCCCCCCeEE
Q 028260          122 NG--TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LK-------PEDAFDPNRVKC  191 (211)
Q Consensus       122 g~--~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~~-------~~~~~d~~~~~~  191 (211)
                      |.  ..++.+|++++....++++++++|+||++++++..+++...++...+......+ ..       ...+.+|+.++.
T Consensus        80 g~~r~~sv~~~l~~~~~~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~r~~~~~  159 (226)
T d1w77a1          80 GKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWE  159 (226)
T ss_dssp             CSSHHHHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEEEEEECCSCCCCBCTTSCBC------CCEE
T ss_pred             cchhhhhhhhhHhhhccccccceecccccccccHHHhhhhhhhhhccCceeeccccccceEEEccCCceeecccchhhhH
Confidence            22  457889999886667999999999999999999999999876544444443333 11       135678888999


Q ss_pred             EeCCCccE
Q 028260          192 VVDNHGYA  199 (211)
Q Consensus       192 v~~~~~~~  199 (211)
                      .++||.|.
T Consensus       160 ~~~p~~f~  167 (226)
T d1w77a1         160 MQTPQVIK  167 (226)
T ss_dssp             EEEEEEEC
T ss_pred             HHHHHhHh
Confidence            99999874

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.7e-20  Score=151.31  Aligned_cols=128  Identities=26%  Similarity=0.342  Sum_probs=107.6

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCCh--
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGT--  124 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~--  124 (211)
                      +|++.|||||+|.|+|+++|++++++|+|||+|+++++++++.+++|+|+|+++++.+.+..+++.++.++....+..  
T Consensus         1 ~~ki~aiIpaR~~S~Rlp~K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~~~i~~~~~~~~~~~~~~~~~~~~~~~~   80 (228)
T d1qwja_           1 PPHLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSST   80 (228)
T ss_dssp             CCCEEEEEECCSCCSSSSCTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCGGGSSTTCC
T ss_pred             CCCEEEEeccCCCCCCCCCcchhhhCCeeHHHHHHHHHHhcCCcceEEEecchhhhhhhhhhcCccccccccccccccch
Confidence            478999999999999999999999999999999999999998999999999999999999999998877665444432  


Q ss_pred             --HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHH-hCCCeEEEEee
Q 028260          125 --ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ-AAPDAVFSTAV  175 (211)
Q Consensus       125 --~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~-~~~d~vv~v~~  175 (211)
                        +.+..+++... ..+.++++.+|.||+++++|+.+++.+. +..|.++++..
T Consensus        81 ~~~~i~~~~~~~~-~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~  133 (228)
T d1qwja_          81 SLDAIVEFLNYHN-EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVR  133 (228)
T ss_dssp             HHHHHHHHHTTCT-TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEE
T ss_pred             hhhhhhhcccccc-ccceeeeecccccccCchhhhhhhhhhhccCccccccccc
Confidence              33444554432 4788999999999999999999999985 45677776653

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=99.83  E-value=3.2e-20  Score=151.04  Aligned_cols=151  Identities=16%  Similarity=0.196  Sum_probs=100.2

Q ss_pred             CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcH-HHHHHHH-HcCCeEeeCCcccCC
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDE-KIAECCQ-QFGADVIMTSESCRN  122 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e-~i~~~~~-~~~v~vi~~~~~~~g  122 (211)
                      +|+.|||||||.|+||+   +|+|++++|+|||+|+++++.+++.++.++|+++++ .+.+... .+........ ....
T Consensus         2 ~K~iAIIlAaG~gtRm~~~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~~~~~~~~~~~~~~~~~~~-g~~~   80 (226)
T d1vgwa_           2 RKNIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADKVQTAFPQVRVWKN-GGQT   80 (226)
T ss_dssp             CCEEEEEECC----------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHHHHHHCTTSEEECC-CCSS
T ss_pred             CceEEEEeCCCCcccCCcCCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchhhhhhhhhcccccceeeccc-cccc
Confidence            57789999999999997   499999999999999999999988889999988643 3333333 3332222221 1112


Q ss_pred             ChHHHHHHHHhhc-----cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeC----CC---CCCCCCCCe
Q 028260          123 GTERCNEALQKLE-----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSL----KP---EDAFDPNRV  189 (211)
Q Consensus       123 ~~~si~~al~~l~-----~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~----~~---~~~~d~~~~  189 (211)
                      ...++..++..+.     .+.+.++++++|+||++++.+..+++.+... .+.+++....+.    ..   ..+.+++.+
T Consensus        81 ~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~r~~~  160 (226)
T d1vgwa_          81 RAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPVADTLKRAESGQISATVDRSGL  160 (226)
T ss_dssp             HHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEEECCSCEEEESSSBEEEEECCTTE
T ss_pred             cchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccceeecccccccceeccCCeEEeccchHHH
Confidence            2345666665542     3578999999999999999999999988644 344444443321    11   245778888


Q ss_pred             EEEeCCCccE
Q 028260          190 KCVVDNHGYA  199 (211)
Q Consensus       190 ~~v~~~~~~~  199 (211)
                      ..+++||+|.
T Consensus       161 ~~~~~p~~f~  170 (226)
T d1vgwa_         161 WQAQTPQLFQ  170 (226)
T ss_dssp             EEEEEEEEEE
T ss_pred             HHHHhhhccc
Confidence            8889888774

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.82  E-value=7.2e-20  Score=146.96  Aligned_cols=128  Identities=21%  Similarity=0.274  Sum_probs=108.1

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCC----
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNG----  123 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~----  123 (211)
                      .+..|||||+|.|+|+++|+|++++|+||++|+++++.+++.+++|+|+++++++.++++.++..++.++....+.    
T Consensus         3 ~~~iaiIpar~~S~R~p~K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td~~~i~~i~~~~~~~~~~~~~~~~~~~~~~   82 (225)
T d1eyra_           3 KQNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASS   82 (225)
T ss_dssp             CEEEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCHHHHSTTCCH
T ss_pred             CCEEEEEccCCCCcCCCCccccccCCeEHHHHHHHHHHHcCCCceEEEeeccchhhhhhhhhcceeeeeccccccccccc
Confidence            3567999999999999999999999999999999999999889999999999999999999999887776443322    


Q ss_pred             hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHH-hCCCeEEEEee
Q 028260          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ-AAPDAVFSTAV  175 (211)
Q Consensus       124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~-~~~d~vv~v~~  175 (211)
                      ...+..+++....+.|.++++.+|.||+++++|+++++.+. ...|.++++..
T Consensus        83 ~~~~~~~~~~~~~~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~  135 (225)
T d1eyra_          83 ISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACP  135 (225)
T ss_dssp             HHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEE
T ss_pred             hhhccccccccccccceEEEeeccccccccccccccceeeccccccccceeec
Confidence            24466777776556789999999999999999999999885 34576766553

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=3.5e-20  Score=150.16  Aligned_cols=150  Identities=14%  Similarity=0.161  Sum_probs=106.5

Q ss_pred             CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcC--CeEeeCCcccC
Q 028260           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG--ADVIMTSESCR  121 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~--v~vi~~~~~~~  121 (211)
                      .|++ |||||||.|+||+   +|+|++++|+|||+|+++++.+++.++.|+|+++.+....+.+...  ..+.... ...
T Consensus         2 ~M~i-AIILAaG~gtRm~~~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~~~~~~~~~-~~~   79 (221)
T d1vpaa_           2 HMNV-AILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGIVE-GGD   79 (221)
T ss_dssp             CCEE-EEEEECCCCGGGCCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCCCTTEEEEEE-CCS
T ss_pred             CCeE-EEEccCcCcccCCCCCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhhhHHHhhhcccccccccc-ccc
Confidence            3677 8999999999997   5999999999999999999998878999999998766544433222  2221111 111


Q ss_pred             CChHHHHHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-CC-----CCCCCCCCCeEEEeC
Q 028260          122 NGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LK-----PEDAFDPNRVKCVVD  194 (211)
Q Consensus       122 g~~~si~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~~-----~~~~~d~~~~~~v~~  194 (211)
                      +...+...++..+. ...+.++++++|+||++++++..+++.+.+....+.+....+ +.     ....++++.+...+.
T Consensus        80 ~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  159 (221)
T d1vpaa_          80 TRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDRIEYIPRKGVYRILT  159 (221)
T ss_dssp             SHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEETTEEEEECCTTEEEEEE
T ss_pred             cccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhcccccccccccccceeEeecCccceecchHHHHHhhh
Confidence            23456666776653 357899999999999999999999999876555555544333 11     123445566667777


Q ss_pred             CCcc
Q 028260          195 NHGY  198 (211)
Q Consensus       195 ~~~~  198 (211)
                      |+.+
T Consensus       160 ~~~~  163 (221)
T d1vpaa_         160 PQAF  163 (221)
T ss_dssp             EEEE
T ss_pred             hhhh
Confidence            7655

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.9e-19  Score=140.31  Aligned_cols=113  Identities=21%  Similarity=0.270  Sum_probs=87.4

Q ss_pred             CCcEEEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCC-cccCCC
Q 028260           47 RSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTS-ESCRNG  123 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~-~~~~g~  123 (211)
                      |.++.+||||||.|+|||  +|+|++++|+|||+|+++++...  +++++|+++.+.  +....++..+.... +...++
T Consensus         1 M~~i~~iILAgG~ssRmG~~~K~ll~~~g~~ll~~~l~~l~~~--~~~ivv~~~~~~--~~~~~~~~~v~~d~~~~~~~~   76 (188)
T d1e5ka_           1 MTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMTQ--LSHVVVNANRHQ--EIYQASGLKVIEDSLADYPGP   76 (188)
T ss_dssp             CCSEEEEEECCCCCSSSCSSCGGGSEETTEEHHHHHHHHHHHH--CSCEEEECSSSH--HHHHTTSCCEECCCTTCCCSH
T ss_pred             CCceeEEEEcCCCCcCCCCCCcccCEECCEehhHHHHhhhccc--ccccccccCccH--HhhhhcCCCccccccccccch
Confidence            567999999999999997  49999999999999999999874  678888876432  22234556654432 223345


Q ss_pred             hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028260          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (211)
Q Consensus       124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (211)
                      ..++..++.+.  ..+++++++||+|++++++++.++++..+
T Consensus        77 ~~g~~~~~~~~--~~~~vlv~~~D~P~i~~~~i~~L~~~~~~  116 (188)
T d1e5ka_          77 LAGMLSVMQQE--AGEWFLFCPCDTPYIPPDLAARLNHQRKD  116 (188)
T ss_dssp             HHHHHHHHHHC--CSSEEEEEETTCTTCCTTHHHHHHHTCTT
T ss_pred             hHHHHHHHHhc--ccceEEEeccCCCCCCHHHHHHHHHhccc
Confidence            56677777765  57899999999999999999999987543

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=9.9e-20  Score=147.08  Aligned_cols=150  Identities=11%  Similarity=0.162  Sum_probs=104.8

Q ss_pred             CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH--HHHHHHHcCCeEeeCCcccC
Q 028260           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK--IAECCQQFGADVIMTSESCR  121 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~--i~~~~~~~~v~vi~~~~~~~  121 (211)
                      .|++.|||||||.|+||+   +|+|++++|+|||+|+++++.+++.+++|+|+++.+.  +..........+.... ...
T Consensus         1 ~M~i~AIILAaG~gtRm~~~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~~~~~v~~~~-~~~   79 (225)
T d1i52a_           1 HLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVD-GGD   79 (225)
T ss_dssp             CCCEEEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGGGCTTEEEEE-CCS
T ss_pred             CCCEEEEEeCCCcceeCCCCCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhhhhhhhhhcccccccccc-CCc
Confidence            389999999999999997   4999999999999999999998878899999986432  2222112222222211 122


Q ss_pred             CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEE-EEeeee-C---CC-----CCCCCCCCeEE
Q 028260          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF-STAVTS-L---KP-----EDAFDPNRVKC  191 (211)
Q Consensus       122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv-~v~~~~-~---~~-----~~~~d~~~~~~  191 (211)
                      +...++..++..+. +.+.++++++|.||++++++..+++.+..+.+..+ .+...+ +   ..     ..+.+++.+..
T Consensus        80 ~~~~sv~~~~~~~~-~~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  158 (225)
T d1i52a_          80 ERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWH  158 (225)
T ss_dssp             SHHHHHHHHHHTST-TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEECCSCEEEECTTSSSEEEEECCTTCEE
T ss_pred             chhHHHHhhhcccC-ccceeeeeccCCCCCCHHHHHHHHhhhhhcccccccccceeeccchhcccccccccccchHHHHH
Confidence            34567888888875 57899999999999999999999998875544443 332222 1   01     13445556666


Q ss_pred             EeCCCcc
Q 028260          192 VVDNHGY  198 (211)
Q Consensus       192 v~~~~~~  198 (211)
                      +++++.|
T Consensus       159 ~~~~~~f  165 (225)
T d1i52a_         159 ALTPQFF  165 (225)
T ss_dssp             EEEEEEE
T ss_pred             Hhhhhhh
Confidence            6665544

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=9e-19  Score=142.33  Aligned_cols=116  Identities=20%  Similarity=0.214  Sum_probs=91.6

Q ss_pred             CcEEEEEecCCCCCCC---C--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCC
Q 028260           48 SRVVGIIPARFASSRF---E--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRN  122 (211)
Q Consensus        48 m~i~aIIlA~G~ssRl---g--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g  122 (211)
                      ||.+|||||||+|+||   |  +|+|++++|+|||+|+++++.++ +++.++|+++++...      .......  ...+
T Consensus         1 M~~~avIlA~G~~~r~~r~g~~~K~L~~i~Gkpli~~~~~~l~~~-~~~~vvv~~~~~~~~------~~~~~~~--~~~~   71 (231)
T d2dpwa1           1 MRPSAIVLAGGKEAWAERFGVGSKALVPYRGRPMVEWVLEALYAA-GLSPVYVGENPGLVP------APALTLP--DRGG   71 (231)
T ss_dssp             CCCEEEEECCCBCSGGGTTTCSBGGGSEETTEETHHHHHHHHHHT-TCEEEEESCCSSCSS------CCSEEEC--CCSS
T ss_pred             CCceEEEECCCCCCCCCCCCCCCceeeEECCeeHHHHHHHHHHhc-CCCeEEeeeeccccc------eeeeecc--cchH
Confidence            7899999999999765   4  49999999999999999999998 588888888764311      1112222  3346


Q ss_pred             ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeee
Q 028260          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT  176 (211)
Q Consensus       123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~  176 (211)
                      ...++..|++.+   .+++++++||+||+++++++.+++.+.+ .+.++++...
T Consensus        72 ~~~~v~~al~~~---~~~~lv~~~D~P~i~~~~i~~l~~~~~~-~~~~~~~~~~  121 (231)
T d2dpwa1          72 LLENLEQALEHV---EGRVLVATGDIPHLTEEAVRFVLDKAPE-AALVYPIVPK  121 (231)
T ss_dssp             HHHHHHHHHHTC---CSEEEEEETTCTTCCHHHHHHHHHHCCS-CSEEEEEEEH
T ss_pred             HHHHHHHHHHhh---cCceEEeeCCCccCCHHHHHHHHHHhhh-cCceEEEEec
Confidence            778899999987   3689999999999999999999998754 4666665543

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.71  E-value=2.5e-16  Score=126.90  Aligned_cols=148  Identities=14%  Similarity=0.083  Sum_probs=99.1

Q ss_pred             EEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHH-HHHcCCeEeeCCcccCCChH
Q 028260           50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC-CQQFGADVIMTSESCRNGTE  125 (211)
Q Consensus        50 i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~-~~~~~v~vi~~~~~~~g~~~  125 (211)
                      ..|||||||.||||+   ||+|++++|+|||+|+++++.+. ++++++|++++...... ............ ...|...
T Consensus         2 ~~AIIlAaG~GtRl~~~~PK~L~~i~Gkpli~~~l~~l~~~-~~~~iivv~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~   79 (250)
T d1g97a2           2 NFAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAI-QPEKTVTVVGHKAELVEEVLAGQTEFVTQS-EQLGTGH   79 (250)
T ss_dssp             EEEEEECCCCCGGGCCSSCGGGSEETTEEHHHHHHHHHGGG-CCSEEEEEECTTHHHHHHHTTTTSEEEECS-SCCCHHH
T ss_pred             cEEEEECCCCCCCCCCCCCceeeEECCeeHHHHHHHHHHHc-CCCeEEEecccccchhhhhccccccccccc-cccccch
Confidence            469999999999996   39999999999999999999988 68999988875432211 111123333322 2335556


Q ss_pred             HHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEeeec
Q 028260          126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR  204 (211)
Q Consensus       126 si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~~  204 (211)
                      ++..++..+....+.++++.+|.|++++..++++++.+.+.....+. ...+...    .....+.+.+.+..+..|..
T Consensus        80 ~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~v~~~~~  153 (250)
T d1g97a2          80 AVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATI-LTAETDN----PFGYGRIVRNDNAEVLRIVE  153 (250)
T ss_dssp             HHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEE-EEEECSC----CTTSCEEEECTTCCEEEEEC
T ss_pred             HHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhhcccccc-ccceecc----cCCCceEEEeeceEEEEeec
Confidence            67777777654567889999999999999999999988654333322 2223211    11234455555555555443

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.64  E-value=2.7e-15  Score=126.55  Aligned_cols=148  Identities=17%  Similarity=0.194  Sum_probs=99.5

Q ss_pred             CCCcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHHH---HcCCeE
Q 028260           46 FRSRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADV  113 (211)
Q Consensus        46 ~~m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~~---~~~v~v  113 (211)
                      ..|+  |||||||.||||.      ||+|++++|+|||+|+++++... ++++++|+++.   +.+.++..   ++++++
T Consensus         2 ~~Mk--avIlagG~GtRl~p~t~~~PK~ll~i~~kpii~~~l~~l~~~-g~~~i~Iv~~~~~~~~~~~~~~~~~~~~~~i   78 (295)
T d1lvwa_           2 AHMK--GIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLA-GIRDILIISTPRDLPLYRDLLGDGSQFGVRF   78 (295)
T ss_dssp             CSCE--EEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTSGGGTSEE
T ss_pred             CCcE--EEEECCCCcccCCcccCCCCcccCeECCEEHHHHHHHHHHHC-CCCeEEEEeCcccHHHHHHHhccchhcCCEE
Confidence            4566  8999999999994      59999999999999999999987 58999988874   33444442   346555


Q ss_pred             --eeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCC-Ce
Q 028260          114 --IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPN-RV  189 (211)
Q Consensus       114 --i~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~-~~  189 (211)
                        +..++ ..|+..++..+.+.+. +.+.++++.+| ++++.. +..++..+.+ ..+.++.+  ++.+     ++. .-
T Consensus        79 ~~v~e~~-~~gta~Al~~a~~~l~-~~~~~li~~~d-~~~~~~-~~~~~~~~~~~~~~~ti~~--~~~~-----~~~~yG  147 (295)
T d1lvwa_          79 SYRVQEE-PRGIADAFIVGKDFIG-DSKVALVLGDN-VFYGHR-FSEILRRAASLEDGAVIFG--YYVR-----DPRPFG  147 (295)
T ss_dssp             EEEECSS-CCCGGGHHHHTHHHHT-TSCEEEEETTC-CEECTT-HHHHHHHHHTCCSSEEEEE--EECS-----CCTTSE
T ss_pred             EEEECCC-CCCHHHHHHHHHHHcC-CCCEEEEeCCc-ceechh-HHHHHHHHHhCCCCeEEEE--EEcC-----CCcccc
Confidence              44433 3466678888888885 34455555555 577664 5555555543 33444433  3321     233 34


Q ss_pred             EEEeCCCccEEeeecCCC
Q 028260          190 KCVVDNHGYAIYFSRGLI  207 (211)
Q Consensus       190 ~~v~~~~~~~~~~~~~~~  207 (211)
                      .+..+.++.+..|.+.+-
T Consensus       148 ~i~~~~~~~v~~~~EKp~  165 (295)
T d1lvwa_         148 VVEFDSEGRVISIEEKPS  165 (295)
T ss_dssp             EEEECTTSBEEEEEESCS
T ss_pred             EEEECCCCcEEEEeeccc
Confidence            455678888999987753

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.8e-15  Score=122.16  Aligned_cols=113  Identities=16%  Similarity=0.138  Sum_probs=83.3

Q ss_pred             EEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcH--HHHHHHHHcCCeEeeCCcccCCCh
Q 028260           50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDE--KIAECCQQFGADVIMTSESCRNGT  124 (211)
Q Consensus        50 i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e--~i~~~~~~~~v~vi~~~~~~~g~~  124 (211)
                      +.+||||||.|+||+   ||+|++++|+|||+|+++.+... ++++|+|+++..  .+........ ..........|..
T Consensus         3 MkvIILAAG~GtRm~~~~PKpli~i~gkpiie~~i~~l~~~-~~~~iiiv~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~   80 (248)
T d2oi6a2           3 MSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANEL-GAAHVHLVYGHGGDLLKQALKDDN-LNWVLQAEQLGTG   80 (248)
T ss_dssp             EEEEEECCSCCGGGCCSSCGGGSEETTEEHHHHHHHHHHHH-TCSCEEEEESSCHHHHHHHCCCTT-EEEEECSSCCCHH
T ss_pred             ceEEEECCCCCCCCCCCCCeeeEEECChhHHHHHHHHHHHc-CCcEEEeccCcccceeeeeccccc-ccccccccCcccH
Confidence            458999999999995   59999999999999999999998 688999998753  3222221212 2222222344556


Q ss_pred             HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028260          125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (211)
Q Consensus       125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (211)
                      .++..+.+.+. ....++++.+|.++.+...+..+......
T Consensus        81 ~~~~~~~~~i~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  120 (248)
T d2oi6a2          81 HAMQQAAPFFA-DDEDILMLYGDVPLISVETLQRLRDAKPQ  120 (248)
T ss_dssp             HHHHHHGGGSC-TTSEEEEEETTCTTCCHHHHHHHHHHCCT
T ss_pred             HHHHhhhhhhc-cccceeeecCccccccchhHHHHHHHhhc
Confidence            77877777764 45688999999999998888877765533

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.60  E-value=6.3e-16  Score=123.83  Aligned_cols=141  Identities=18%  Similarity=0.141  Sum_probs=96.2

Q ss_pred             CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcc
Q 028260           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSES  119 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~  119 (211)
                      |++.|||||||.|+||+      +|+|++++|+|||+|+++.+.+. ++++|+|+++  .+.++.+.+.+++++++.++.
T Consensus         2 m~mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gkpli~~~i~~l~~~-g~~~i~iv~g~~~e~i~~~~~~~~i~i~~~~~~   80 (229)
T d1jyka_           2 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEK-GINDIIIIVGYLKEQFDYLKEKYGVRLVFNDKY   80 (229)
T ss_dssp             CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCCEEEEECTTGGGGTHHHHHHCCEEEECTTT
T ss_pred             CceeEEEECCCCcccCCccccCCCcceeEECCEEHHHHHHHHHHHh-CCcccccccccchhhhhhhhhhccccccccccc
Confidence            56679999999999996      59999999999999999999987 5899999996  466777777789988776544


Q ss_pred             c-CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCcc
Q 028260          120 C-RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY  198 (211)
Q Consensus       120 ~-~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~  198 (211)
                      . .|...++..|.+.+.   +.+++. +|..+... .+.    ... ..+..+++.+.+       ..+...++.+.++.
T Consensus        81 ~~~Gt~~sl~~a~~~l~---~~~ii~-~dd~~~~~-~~~----~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~  143 (229)
T d1jyka_          81 ADYNNFYSLYLVKEELA---NSYVID-ADNYLFKN-MFR----NDL-TRSTYFSVYRED-------CTNEWFLVYGDDYK  143 (229)
T ss_dssp             TTSCTHHHHHTTGGGCT---TEEEEE-TTEEESSC-CCC----SCC-CSEEEEECEESS-------CSSCCEEEECTTCB
T ss_pred             cccccccccccchhhhc---cccccc-cccccccc-chh----hhh-hccccceeeeee-------ccccceeEEccCCc
Confidence            3 355677877777662   445554 55544432 111    111 122333333322       22345566777777


Q ss_pred             EEeeecCC
Q 028260          199 AIYFSRGL  206 (211)
Q Consensus       199 ~~~~~~~~  206 (211)
                      +..|.+++
T Consensus       144 i~~~~~~~  151 (229)
T d1jyka_         144 VQDIIVDS  151 (229)
T ss_dssp             EEEEECCC
T ss_pred             eeeEEEec
Confidence            77776654

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.60  E-value=5.7e-15  Score=125.07  Aligned_cols=147  Identities=16%  Similarity=0.171  Sum_probs=103.3

Q ss_pred             EEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC---cHHHHHHHH---HcCCeEee-C
Q 028260           50 VVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQ---QFGADVIM-T  116 (211)
Q Consensus        50 i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~---~e~i~~~~~---~~~v~vi~-~  116 (211)
                      ..|||||||.||||.      +|+|+|++|+|||+|+++.+..+ ++++|+|+++   .+.+.++..   ++++++.+ .
T Consensus         2 ~KavILAgG~GtRl~plT~~~pKpllpi~gkPiI~~~l~~l~~~-Gi~ei~ii~~~~~~~~i~~~~~~~~~~g~~I~y~~   80 (292)
T d1fxoa_           2 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAV   80 (292)
T ss_dssp             EEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEE
T ss_pred             cEEEEECCCCCCcCChhhcCCCcccCEECCEehHHHHHHHHHHC-CCCEEEEEeCcCCHHHHHHHhccccccCeEEEEcc
Confidence            469999999999995      69999999999999999999998 6999987764   345555543   45777633 2


Q ss_pred             CcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCCCCCCCCCCeE-EEeC
Q 028260          117 SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVK-CVVD  194 (211)
Q Consensus       117 ~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~~~~~d~~~~~-~v~~  194 (211)
                      .+...|...++..|.+.+. +.+.++++.+|. +.+. .+.++++.+.++ .++.+...  ++     -|++++- +..|
T Consensus        81 q~~~~Gta~ai~~a~~~i~-~~~~~lil~dD~-~~~~-dl~~ll~~h~~~~~~~~i~~~--~V-----~~p~~yGV~~~d  150 (292)
T d1fxoa_          81 QPSPDGLAQAFLIGESFIG-NDLSALVLGDNL-YYGH-DFHELLGSASQRQTGASVFAY--HV-----LDPERYGVVEFD  150 (292)
T ss_dssp             CSSCCCGGGHHHHTHHHHT-TSEEEEEETTEE-EECT-THHHHHHHHHTCCSSEEEEEE--EC-----SCGGGSEEEEEC
T ss_pred             CCCCCcHHHHHHhhhhhcC-CCceEEEEcccc-ccCc-CHHHHHHHHHhCCCCcEEEEE--EC-----CCHHHCeEEEEc
Confidence            2234466678888888884 234556666664 4444 688999888653 34444322  32     2444444 4478


Q ss_pred             CCccEEeeecCCC
Q 028260          195 NHGYAIYFSRGLI  207 (211)
Q Consensus       195 ~~~~~~~~~~~~~  207 (211)
                      .+|+++.|.++|-
T Consensus       151 ~~~ki~~~~EKP~  163 (292)
T d1fxoa_         151 QGGKAISLEEKPL  163 (292)
T ss_dssp             TTSCEEEEEESCS
T ss_pred             CCCCEeEEEECCC
Confidence            9999999988864

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=5e-15  Score=125.34  Aligned_cols=145  Identities=19%  Similarity=0.183  Sum_probs=99.3

Q ss_pred             EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHH---HHcCCeEeeCCc-
Q 028260           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECC---QQFGADVIMTSE-  118 (211)
Q Consensus        52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~---~~~~v~vi~~~~-  118 (211)
                      |||||||.|+||.      +|+|+|++|+|||+|+++.+..+ ++++|+|+++.   +.++.+.   .++|+++.+..+ 
T Consensus         4 aiIlagG~GtRl~p~t~~~pK~llpi~~kp~i~~~l~~l~~~-gi~~i~iv~~~~~~~~~~~~~~~g~~~gi~I~y~~Q~   82 (291)
T d1mc3a_           4 GIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA-GIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQP   82 (291)
T ss_dssp             EEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECS
T ss_pred             EEEECCcCccccchhhcCCCccccEECCEehHHHHHHHHHHc-CCCEEEEEeCcccHHHHHHHhCchHhhCcEEEEEECC
Confidence            9999999999994      69999999999999999999998 69999888863   3345554   356777633222 


Q ss_pred             ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHH-hCCCeEEEEeeeeCCCCCCCCCCCe-EEEeCCC
Q 028260          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ-AAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNH  196 (211)
Q Consensus       119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~-~~~d~vv~v~~~~~~~~~~~d~~~~-~~v~~~~  196 (211)
                      ...|...++..+.+.+.  .+.++++.+|..|... .+..+++.+. +..++.+...  +     .-||.++ .+..|.+
T Consensus        83 ~plGta~Ai~~a~~fi~--~~~~~lvlgddi~~~~-~~~~~l~~~~~~~~~atI~~~--~-----V~dP~~yGVve~d~~  152 (291)
T d1mc3a_          83 SPDGLAQAFIIGETFLN--GEPSCLVLGDNIFFGQ-GFSPKLRHVAARTEGATVFGY--Q-----VMDPERFGVVEFDDN  152 (291)
T ss_dssp             SCCCSTHHHHHTHHHHT--TSCEEEEETTEEEECS-SCHHHHHHHTTCCSSEEEEEE--E-----CSCCSSSBBCEEETT
T ss_pred             CCCchHHHHHHHHHHhC--CCCeEEEECCCcccCc-CHHHHHHHHHhCcCCcEEEEE--E-----CCCcccCCCceeccC
Confidence            23455678888888884  3444555555556665 3556666654 3344443322  3     2245444 4557889


Q ss_pred             ccEEeeecCCC
Q 028260          197 GYAIYFSRGLI  207 (211)
Q Consensus       197 ~~~~~~~~~~~  207 (211)
                      |.+..|.++|-
T Consensus       153 g~i~~i~EKP~  163 (291)
T d1mc3a_         153 FRAISLEEKPK  163 (291)
T ss_dssp             EEEEECCBSCS
T ss_pred             cceeEEEECCC
Confidence            99999988864

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=1.9e-14  Score=119.96  Aligned_cols=154  Identities=12%  Similarity=0.151  Sum_probs=98.3

Q ss_pred             CcEEEEEecCCCCCCC----C---Ccccccc-CCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHH--cCCeEeeCC
Q 028260           48 SRVVGIIPARFASSRF----E---GKPLVNI-LGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ--FGADVIMTS  117 (211)
Q Consensus        48 m~i~aIIlA~G~ssRl----g---~K~ll~l-~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~--~~v~vi~~~  117 (211)
                      ||+.|||||||.||||    .   +|+|+++ +|+|||+|+++++......++++|+++... +.+.+.  .+.+++..+
T Consensus         1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~ii~E~   79 (268)
T d2cu2a2           1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQ-EAVARPYADGIRLLLEP   79 (268)
T ss_dssp             CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGG-HHHHGGGCSSSEEEEES
T ss_pred             CCceEEEecCCCcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHH-HHHhhhhccccceeeee
Confidence            7899999999999999    2   6999997 679999999999987656778888886432 122222  245555543


Q ss_pred             cccCCChHHHHHHHHhh-ccCCCEEEEEcCCCcCCCHHHHHHHHHHHH--hCCCeEEEEeeeeCCCCCCCCCCCeEEEeC
Q 028260          118 ESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQ--AAPDAVFSTAVTSLKPEDAFDPNRVKCVVD  194 (211)
Q Consensus       118 ~~~~g~~~si~~al~~l-~~~~d~vlv~~~D~Pli~~~~i~~li~~~~--~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~  194 (211)
                      . ..|+..++..++... ...++.++|+++|+++.....+...+....  ...+.++++...+..+.    ....+...+
T Consensus        80 ~-~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~yG~i~~~  154 (268)
T d2cu2a2          80 L-GRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPE----TEYGYIRLG  154 (268)
T ss_dssp             S-CCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCC----SSSCEEEEE
T ss_pred             e-cCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeeccccccc----cccceEEec
Confidence            2 223334555554433 235689999999999988887777666542  23345555554442221    122333333


Q ss_pred             CCc----cEEeeecCCC
Q 028260          195 NHG----YAIYFSRGLI  207 (211)
Q Consensus       195 ~~~----~~~~~~~~~~  207 (211)
                      +++    .+..|.+++.
T Consensus       155 ~~~~~~~~v~~f~EKp~  171 (268)
T d2cu2a2         155 PREGAWYRGEGFVEKPS  171 (268)
T ss_dssp             EEETTEEEEEEEECCCC
T ss_pred             cccccchhhheeecccc
Confidence            332    3667776653

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.44  E-value=5.2e-13  Score=111.41  Aligned_cols=151  Identities=17%  Similarity=0.172  Sum_probs=92.2

Q ss_pred             cEEEEEecCCCCCCCC------CccccccCC-eehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHH-Hc---------
Q 028260           49 RVVGIIPARFASSRFE------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQ-QF---------  109 (211)
Q Consensus        49 ~i~aIIlA~G~ssRlg------~K~ll~l~G-kpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~-~~---------  109 (211)
                      ++.|||||||.||||.      +|+|++++| +|||+|+++.+.++ ++++|+|+++.  +.+..+.. .+         
T Consensus        11 ~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~   89 (307)
T d1yp2a2          11 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKN   89 (307)
T ss_dssp             HEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHT-TCCEEEEEESCCCHHHHHHHHHHCC--------
T ss_pred             ceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHc-CCCEEEEEeccccccchhhhhcccccccccccc
Confidence            4889999999999995      599999988 59999999999998 69999999873  44444332 11         


Q ss_pred             -CCeEeeCCc-------ccCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHH-hCCCeEEEEeeeeCC
Q 028260          110 -GADVIMTSE-------SCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQ-AAPDAVFSTAVTSLK  179 (211)
Q Consensus       110 -~v~vi~~~~-------~~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~-~~~d~vv~v~~~~~~  179 (211)
                       +...++...       ...|...++..++..+.. ..+.++++.+|. ++.. .+..+++.+. ++.+..+........
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~-~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~  167 (307)
T d1yp2a2          90 EGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDH-LYRM-DYEKFIQAHRETDADITVAALPMDEK  167 (307)
T ss_dssp             CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCE-ECCC-CHHHHHHHHHHTTCSEEEEEEEECHH
T ss_pred             cccceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcc-eecc-chhhhhhhhhhccccceEEEEecccc
Confidence             122222111       112344667777777642 246899999998 4444 4566777664 444555443322211


Q ss_pred             CCCCCCCCCeEEEeCCCccEEeeecCC
Q 028260          180 PEDAFDPNRVKCVVDNHGYAIYFSRGL  206 (211)
Q Consensus       180 ~~~~~d~~~~~~v~~~~~~~~~~~~~~  206 (211)
                      +  .  ...-.+..|++|++..|.+++
T Consensus       168 ~--~--~~~gvv~~d~~~~v~~~~Ek~  190 (307)
T d1yp2a2         168 R--A--TAFGLMKIDEEGRIIEFAEKP  190 (307)
T ss_dssp             H--H--TTSEEEEECTTSBEEEEEESC
T ss_pred             c--c--cccceEEECCCCcEEEEEECC
Confidence            1  0  013345568888999888764

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.33  E-value=5.5e-12  Score=101.51  Aligned_cols=58  Identities=21%  Similarity=0.292  Sum_probs=46.9

Q ss_pred             CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHH
Q 028260           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECC  106 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~  106 (211)
                      |...|||||||.|+||+      ||+|++++|+|||+|+++.+.++ ++++|+|+++  .+.+.++.
T Consensus         1 ~~~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gkplI~~~i~~l~~~-gi~~i~iv~gy~~~~i~~~~   66 (259)
T d1tzfa_           1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH-GIKDFIICCGYKGYVIKEYF   66 (259)
T ss_dssp             CCCEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTHHHHHHHH
T ss_pred             CCceEEEECCCccccCChhhCCCCccceEECCEEHHHHHHHHHHHc-CCCeeeeccchhHHHHHHHH
Confidence            45669999999999996      59999999999999999999998 6999999997  35566554

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.0001  Score=55.98  Aligned_cols=108  Identities=14%  Similarity=0.183  Sum_probs=72.5

Q ss_pred             CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcC---cHHHHHHHHHc---CCeEeeCCcccC
Q 028260           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQF---GADVIMTSESCR  121 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~---~e~i~~~~~~~---~v~vi~~~~~~~  121 (211)
                      -++++|||+              ++....|.++++.+.+....++++|+.|   ++..+.+++..   ...++... ...
T Consensus         3 ~~~tvii~t--------------yn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~-~~~   67 (265)
T d1omza_           3 DSFTLIMQT--------------YNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKP-QTA   67 (265)
T ss_dssp             TCEEEEEEE--------------SSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEE-CSS
T ss_pred             CcEEEEEEc--------------CCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhcccceEEEEec-CCC
Confidence            356677766              4667899999999988766667777654   23333333332   22333332 223


Q ss_pred             CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEE
Q 028260          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST  173 (211)
Q Consensus       122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v  173 (211)
                      |...+...|++.+  +.|+++++++|. .+.++.++.+++.+.++++..+..
T Consensus        68 g~~~a~n~~~~~a--~ge~i~~lD~D~-~~~~~~l~~l~~~~~~~~~~~v~~  116 (265)
T d1omza_          68 NKMRNRLQVFPEV--ETNAVLMVDDDT-LISAQDLVFAFSIWQQFPDQIIGF  116 (265)
T ss_dssp             CCGGGGGSCCTTC--CSSEEEEECTTE-EECHHHHHHHHHHHTTSTTSEEES
T ss_pred             CchhhhhhhHHhC--CcCEEEEeCccc-CCCHHHHHHHHHHHHhCCCcceec
Confidence            5455555677766  579999999999 789999999999998776655543

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.30  E-value=0.00018  Score=61.55  Aligned_cols=103  Identities=11%  Similarity=0.133  Sum_probs=68.5

Q ss_pred             CcEEEEEecCCCCCCCC---CccccccC-CeehHHHHHHHHHc-----CCCCCeEEEEcC---cHHHHHHHHHc---CCe
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKL-----ATTLDHLVVATD---DEKIAECCQQF---GAD  112 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l~-GkpLl~~~i~~l~~-----~~~id~IVVvt~---~e~i~~~~~~~---~v~  112 (211)
                      .++++|+||||.|||||   +|.+++++ |+++++..++++..     ...+ +++|.|+   ++...++++++   +..
T Consensus        73 ~kvavv~LaGG~GTRLG~~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~i-P~~iMtS~~T~~~t~~~l~~~~~fg~~  151 (378)
T d2icya2          73 DKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKV-PLVLMNSFNTHDDTHKIVEKYTNSNVD  151 (378)
T ss_dssp             TTEEEEEEECCBSGGGTCCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCC-CEEEEECTTTHHHHHHHHGGGTTSSSC
T ss_pred             CCEEEEEecCCcccccCCCCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCC-CEEEECCCCChHHHHHHHHHhccCCCc
Confidence            47999999999999997   59999994 89999999999874     2234 4555553   57777777654   333


Q ss_pred             E--eeC-------------------Cc---ccCCChHHHHHHHHh------hc-cCCCEEEEEcCCCcCC
Q 028260          113 V--IMT-------------------SE---SCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPLI  151 (211)
Q Consensus       113 v--i~~-------------------~~---~~~g~~~si~~al~~------l~-~~~d~vlv~~~D~Pli  151 (211)
                      +  +..                   +.   ..+.|...++.+|..      +. ...++++++..|.+.-
T Consensus       152 i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a  221 (378)
T d2icya2         152 IHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGA  221 (378)
T ss_dssp             EEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTC
T ss_pred             eEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCccc
Confidence            2  111                   00   113344344444332      22 3468999999999753

>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

Probab=96.42  E-value=0.0033  Score=55.28  Aligned_cols=112  Identities=19%  Similarity=0.189  Sum_probs=70.6

Q ss_pred             CcEEEEEecCCCCCCCC---Ccccccc---CCeehHHHHHHHHHcCC-----------CCCeEEEEcC---cHHHHHHHH
Q 028260           48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT-----------TLDHLVVATD---DEKIAECCQ  107 (211)
Q Consensus        48 m~i~aIIlA~G~ssRlg---~K~ll~l---~GkpLl~~~i~~l~~~~-----------~id~IVVvt~---~e~i~~~~~  107 (211)
                      -++.+|++|||.|+|||   +|-+.++   .|+++++..+++++...           .+ .++|.|+   ++.+.++++
T Consensus       101 gkvavvllaGG~GTRLG~~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~i-Pl~IMtS~~T~~~t~~~l~  179 (501)
T d1jv1a_         101 NKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCII-PWYIMTSGRTMESTKEFFT  179 (501)
T ss_dssp             TCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCC-CEEEEECTTTHHHHHHHHH
T ss_pred             CCEEEEEECCCccccCCCCCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCc-eEEEECChhHhHHHHHHHH
Confidence            36889999999999998   6999887   68999999888876521           13 4555553   567777776


Q ss_pred             Hc---CCe---E--eeCC-------------------cccCCChHHHHHHHHh------hc-cCCCEEEEEcCCCcCC--
Q 028260          108 QF---GAD---V--IMTS-------------------ESCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPLI--  151 (211)
Q Consensus       108 ~~---~v~---v--i~~~-------------------~~~~g~~~si~~al~~------l~-~~~d~vlv~~~D~Pli--  151 (211)
                      ++   |.+   +  +...                   ...+.|...++.+|..      +. ..-+++.++..|.++.  
T Consensus       180 ~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~  259 (501)
T d1jv1a_         180 KHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKV  259 (501)
T ss_dssp             HTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCT
T ss_pred             hccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCccccc
Confidence            43   322   1  1110                   0012333344444443      21 2468999999999864  


Q ss_pred             -CHHHHHHHH
Q 028260          152 -EPEIIDGVV  160 (211)
Q Consensus       152 -~~~~i~~li  160 (211)
                       ++..+--++
T Consensus       260 ~Dp~~lG~~~  269 (501)
T d1jv1a_         260 ADPRFIGFCI  269 (501)
T ss_dssp             TCHHHHHHHH
T ss_pred             cCHHHHHHHH
Confidence             454544443

>d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MM2497-like
domain: Hypothetical protein MM2497
species: Methanosarcina mazei [TaxId: 2209]

Probab=96.39  E-value=0.0012  Score=51.58  Aligned_cols=108  Identities=19%  Similarity=0.236  Sum_probs=68.5

Q ss_pred             EEEecCC-C-CCCCC----CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChH
Q 028260           52 GIIPARF-A-SSRFE----GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTE  125 (211)
Q Consensus        52 aIIlA~G-~-ssRlg----~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~  125 (211)
                      +|||..- + -|||.    .+.-..+. +-|+.++++.+.++ .++.++++++.++....  ..+..+...   ..+-..
T Consensus         3 ~iiPiK~~~aKTRL~~~L~~~~r~~L~-~~ml~~tl~~l~~~-~~~~v~~vs~~~~~~~~--~~~~~~~~~---~~~L~~   75 (208)
T d2i5ea1           3 AVIPYKKAGAKSRLSPVLSLQEREEFV-ELMLNQVISSLKGA-GIEQVDILSPSVYGLEE--MTEARVLLD---EKDLNE   75 (208)
T ss_dssp             EEEECCCTTTTGGGTTTSCHHHHHHHH-HHHHHHHHHHHHHT-TCSEEEEEESSCTTCSS--CCSSEEEEC---CSCHHH
T ss_pred             EEEecCCCCCccCcCcccCHHHHHHHH-HHHHHHHHHHHHhC-CCcEEEEEcCcHHHHHH--hhcCCcccC---CCCHHH
Confidence            7888642 2 35664    22222232 46999999999987 57888888875442221  122333322   123235


Q ss_pred             HHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       126 si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      ++..+++.   ..+.++++.+|.|.++++.|+.+++   ...+.+++
T Consensus        76 al~~a~~~---~~~~vliig~DlP~L~~~~l~~a~~---~~~d~Vi~  116 (208)
T d2i5ea1          76 ALNRYLKE---AEEPVLIVMADLPLLSPEHIKEISS---TEKDVCIV  116 (208)
T ss_dssp             HHHHHHHH---CCSCEEEECSCCTTCCHHHHHHHTT---CSSSEEEE
T ss_pred             HHHHHHhc---CCCCEEEecCCcCcCCHHHHHHHHh---cCCcEEEE
Confidence            67667664   3689999999999999999998754   34565554

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.36  E-value=0.02  Score=46.16  Aligned_cols=109  Identities=7%  Similarity=0.062  Sum_probs=69.7

Q ss_pred             CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCC--C-CeEEEEcC---cH----HHHHHHHHcCC--eEe
Q 028260           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATT--L-DHLVVATD---DE----KIAECCQQFGA--DVI  114 (211)
Q Consensus        47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~--i-d~IVVvt~---~e----~i~~~~~~~~v--~vi  114 (211)
                      ++.+.+||++-..             ....|.++|+.+.+...  . .+||||-|   ++    .++++.++...  .++
T Consensus        21 ~P~vSIIIp~yNe-------------~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi   87 (328)
T d1xhba2          21 LPTTSVVIVFHNE-------------AWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVI   87 (328)
T ss_dssp             CCCEEEEEEESSC-------------CHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEE
T ss_pred             CCCEEEEEeccCC-------------cHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCCCeEEE
Confidence            4568888888421             12467788887765321  1 36777753   22    23445554443  334


Q ss_pred             eCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028260          115 MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (211)
Q Consensus       115 ~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~  172 (211)
                      ..+ .-.|...+...|++..  ..|+++++++|. .+.++.++.+++.+.++...+++
T Consensus        88 ~~~-~n~G~~~a~N~Gi~~a--~gd~i~flD~D~-~~~p~~l~~l~~~~~~~~~~~v~  141 (328)
T d1xhba2          88 RME-QRSGLIRARLKGAAVS--RGQVITFLDAHC-ECTAGWLEPLLARIKHDRRTVVC  141 (328)
T ss_dssp             ECS-SCCCHHHHHHHHHHHC--CSSEEEEEESSE-EECTTCHHHHHHHHHHCTTEEEE
T ss_pred             Eec-ccccchHHHHHHHHhh--hcceeeecCccc-ccChhHHHHHHHHHhcCCCeEEe
Confidence            333 2234455677788887  589999999999 57899999999998776555544

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.67  E-value=0.028  Score=43.30  Aligned_cols=93  Identities=13%  Similarity=0.226  Sum_probs=59.0

Q ss_pred             CCeehHHHHHHHHHcCCCCC--eEEEEcC--cHHHHHHHHHc----CCeEeeCCc------ccCCC-hHHHHHHHHhhcc
Q 028260           72 LGKPMIQRTWERSKLATTLD--HLVVATD--DEKIAECCQQF----GADVIMTSE------SCRNG-TERCNEALQKLEK  136 (211)
Q Consensus        72 ~GkpLl~~~i~~l~~~~~id--~IVVvt~--~e~i~~~~~~~----~v~vi~~~~------~~~g~-~~si~~al~~l~~  136 (211)
                      ++...|+.+++.+.+.. .+  +|+|+-|  .+...++++++    .++++..+.      ....+ ..+...|++.+  
T Consensus        11 N~~~~l~~~l~Si~~Qt-~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~N~gi~~a--   87 (255)
T d1qg8a_          11 NKSDYVAKSISSILSQT-FSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMA--   87 (255)
T ss_dssp             SCTTTHHHHHHHHHTCS-CCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHhCC-CCCeEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhccccccccccc--
Confidence            45567888898887643 33  5666643  34445554433    334333221      01122 34566788877  


Q ss_pred             CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCC
Q 028260          137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD  168 (211)
Q Consensus       137 ~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d  168 (211)
                      +.++++++++|. ++.++.+..+++.+.++++
T Consensus        88 ~g~~i~~lD~Dd-~~~p~~l~~~~~~~~~~~~  118 (255)
T d1qg8a_          88 EGEYITYATDDN-IYMPDRLLKMVRELDTHPE  118 (255)
T ss_dssp             CCSEEEEEETTE-EECTTHHHHHHHHHHHCTT
T ss_pred             cccccccccccc-ccccchHHHHHHHHHhCCC
Confidence            579999999998 5688999999999876544

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

Probab=92.30  E-value=0.24  Score=41.53  Aligned_cols=99  Identities=10%  Similarity=0.105  Sum_probs=63.1

Q ss_pred             ehHHHHHHHHHcCCCCCeEEEEcC--cHH---HHHHH----HHcCCeE--eeCCc--ccC-CChHHH----HHHHHhhcc
Q 028260           75 PMIQRTWERSKLATTLDHLVVATD--DEK---IAECC----QQFGADV--IMTSE--SCR-NGTERC----NEALQKLEK  136 (211)
Q Consensus        75 pLl~~~i~~l~~~~~id~IVVvt~--~e~---i~~~~----~~~~v~v--i~~~~--~~~-g~~~si----~~al~~l~~  136 (211)
                      +++..+++.+...+..+.|+|+-+  ++.   +....    ...+..+  .....  ... |...++    ..+++..  
T Consensus        13 ~il~~~v~~~a~~P~~~eIvVvDdsSdDtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~g~~~A~~~g~~~a--   90 (381)
T d2bo4a1          13 EVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEET--   90 (381)
T ss_dssp             HHHHHHHHHHHHSTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhCCCeeEEEEEcCCCCCcHHHHHHHhhhhhccccccchhhhhcccccccCCCcHHHHHHHHHHHHhC--
Confidence            688899998888888888887654  222   22221    1123222  21111  111 223333    3444544  


Q ss_pred             CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEee
Q 028260          137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV  175 (211)
Q Consensus       137 ~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~  175 (211)
                      +.|.++++|+|.--.+++.+..++..+.++.|.++++..
T Consensus        91 ~gd~lvflDADl~~~~pe~i~~L~~~i~~g~d~V~g~y~  129 (381)
T d2bo4a1          91 QWERIHFYDADITSFGPDWITKAEEAADFGYGLVRHYFP  129 (381)
T ss_dssp             CCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             CCCEEEEEcCCcCcCCHHHHHHHHHHHhhhcCeEEEeec
Confidence            579999999997567899999999999888888877553