Citrus Sinensis ID: 028261

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHcEEEEEEEEEcccccEEEEEcccccEEEEEEEEEccccccccccccEEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEEEcccccccEEEEEEEEEEcccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHcccEEEEEccccccEEEEEEccccEEEEEEEEEEcccccccccccccEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEEEcccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAediksnsmtvgkynvvnpndghplpeshklTVRVTsaygnsyhyadrvdsgqfaftaaEAGDYMACFwavdhspqttvtidfdwrtgvqakdwsnvakkgsvDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI
Flexible Loop (DISEMBL)
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTgvqakdwsnvakkgsvdVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI
Low Complexity Region (SEG)
MIRltltlvlvigilssTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI
Disordered region (IsUnstruct)
**RLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVN**********HKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER*****ELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFE*****
Disordered Region (DISOPRED)
***LTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAK**************ELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI
Disordered Region (DISEMBL)
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI
Disordered Region (DISPRO)
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q9LQY3	214	Transmembrane emp24 domai	yes	no	0.971	0.957	0.697	6e-88
Q8VY92	214	Transmembrane emp24 domai	no	no	0.971	0.957	0.658	1e-82
Q8GYG1	212	Transmembrane emp24 domai	no	no	0.990	0.985	0.612	9e-80
O81045	213	Transmembrane emp24 domai	no	no	0.905	0.896	0.630	3e-73
Q9LJV9	225	Transmembrane emp24 domai	no	no	0.909	0.853	0.546	1e-63
Q6IDL4	217	Transmembrane emp24 domai	no	no	0.947	0.921	0.424	2e-47
Q8RWM6	216	Transmembrane emp24 domai	no	no	0.843	0.824	0.445	9e-43
Q9FVU0	212	Transmembrane emp24 domai	no	no	0.981	0.976	0.410	4e-42
F4J4Y0	217	Transmembrane emp24 domai	no	no	0.928	0.903	0.344	1e-28
Q9D1D4	219	Transmembrane emp24 domai	yes	no	0.943	0.908	0.294	7e-24

>sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9 OS=Arabidopsis thaliana GN=At1g26690 PE=2 SV=1

 Score =  323 bits (827), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 143/205 (69%), Positives = 176/205 (85%)

Query: 7   TLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLT 66
           T++L + I S  SQSL FE+QS  TKCI+EDIKSNSMTVGKY VVNPN+ HP P+SHK++
Sbjct: 10  TILLFLAISSQVSQSLHFELQSGRTKCISEDIKSNSMTVGKYTVVNPNEAHPSPQSHKIS 69

Query: 67  VRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAK 126
           +RVTS+YGN+YH+A+ V+SGQFAFTA E+GDYMAC+ AVDH P+ T++IDFDWRTGVQ+K
Sbjct: 70  IRVTSSYGNTYHHAEDVESGQFAFTAVESGDYMACYTAVDHKPEVTLSIDFDWRTGVQSK 129

Query: 127 DWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFS 186
            WS+VAKK  V+VME ++K+L +TV+SIH+EMFYLREREEEMQ LNR TNS+MAW S  S
Sbjct: 130 SWSSVAKKSQVEVMEFDVKRLIETVNSIHEEMFYLREREEEMQNLNRATNSKMAWLSFLS 189

Query: 187 LFICIAVAGMQLWHLKTFFEKKKLI 211
           LF+C+ VAGMQ  HLKTFFEKKK+I
Sbjct: 190 LFVCLGVAGMQFVHLKTFFEKKKVI 214

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY92|P24DA_ARATH Transmembrane emp24 domain-containing protein p24delta10 OS=Arabidopsis thaliana GN=At1g69460 PE=1 SV=1

 Score =  305 bits (782), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 135/205 (65%), Positives = 173/205 (84%)

Query: 7   TLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLT 66
           T++L++ I S  S SL F++ S  TKCIAEDIKSNSMTVGKYN+ NP++G  LP++HK++
Sbjct: 10  TMLLILAIWSPISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYNIDNPHEGQALPQTHKIS 69

Query: 67  VRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAK 126
           V+VTS  GN+YH+A++VDSGQFAF+A EAGDYMACF AVDH P+ +++IDF+W+TGVQ+K
Sbjct: 70  VKVTSNSGNNYHHAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEVSLSIDFEWKTGVQSK 129

Query: 127 DWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFS 186
            W+NVAKK  V+VME E+K L DTV+SIH+EM+YLR+REEEMQ+LNR TN++MAW S  S
Sbjct: 130 SWANVAKKSQVEVMEFEVKSLLDTVNSIHEEMYYLRDREEEMQDLNRSTNTKMAWLSVLS 189

Query: 187 LFICIAVAGMQLWHLKTFFEKKKLI 211
            F+CI VAGMQ  HLKTFFEKKK+I
Sbjct: 190 FFVCIGVAGMQFLHLKTFFEKKKVI 214

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYG1|P24D7_ARATH Transmembrane emp24 domain-containing protein p24delta7 OS=Arabidopsis thaliana GN=At1g14010 PE=2 SV=1

 Score =  296 bits (757), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 128/209 (61%), Positives = 169/209 (80%)

Query: 3   RLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPES 62
           R +  ++L++ ILS  + S+R+E+ S HTKCI+E+I +N+MT+GKY+++NP++ HPLP S
Sbjct: 4   RRSSIVLLILSILSPVTLSIRYELLSGHTKCISEEIHANAMTIGKYSIINPHEDHPLPSS 63

Query: 63  HKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTG 122
           HK+TVRVTS  G +YH +D V+SGQF+F A E GDY++CF AVDH P+TT+ IDFDWRTG
Sbjct: 64  HKVTVRVTSPQGTAYHESDGVESGQFSFVAVETGDYISCFSAVDHKPETTLIIDFDWRTG 123

Query: 123 VQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWF 182
           +  KDWSNVAKK  V+ ME E+KKL++TV+ IH EMFYLR+REEEM  LN  TNS+MAW 
Sbjct: 124 IHTKDWSNVAKKSQVETMEFEVKKLFETVNGIHDEMFYLRDREEEMHNLNIATNSKMAWL 183

Query: 183 SGFSLFICIAVAGMQLWHLKTFFEKKKLI 211
           S  SL +C++VAG+Q WHLKTFF+KKKLI
Sbjct: 184 SFVSLAVCLSVAGLQFWHLKTFFQKKKLI 212

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|O81045|P24D8_ARATH Transmembrane emp24 domain-containing protein p24delta8 OS=Arabidopsis thaliana GN=At2g03290 PE=1 SV=1

 Score =  274 bits (700), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 158/192 (82%), Gaps = 1/192 (0%)

Query: 21  SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPN-DGHPLPESHKLTVRVTSAYGNSYHY 79
           S+R+E++S+ TKCI E+I  N+M++GKY +VNPN D HPLP+SHK+ V+V    G + H 
Sbjct: 22  SMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDNHPLPDSHKIIVKVMPPQGKNLHE 81

Query: 80  ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
           AD+V++GQF+FTA E G Y+AC  A+D+ P+TT+TIDFDW+TGV +K+W+NVAKK  VD+
Sbjct: 82  ADKVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDWKTGVHSKEWTNVAKKSQVDM 141

Query: 140 MELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLW 199
           ME ++K L DTV SIH+EM+YLREREEEMQELNR TNS+MAW S  SL +C++VAG+Q W
Sbjct: 142 MEYQVKTLMDTVISIHEEMYYLREREEEMQELNRSTNSKMAWLSFGSLVVCLSVAGLQFW 201

Query: 200 HLKTFFEKKKLI 211
           HLKTFFEKKKLI
Sbjct: 202 HLKTFFEKKKLI 213

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJV9|P24DB_ARATH Transmembrane emp24 domain-containing protein p24delta11 OS=Arabidopsis thaliana GN=At3g29070 PE=2 SV=1

 Score =  242 bits (617), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 147/192 (76%)

Query: 20  QSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY 79
           +S+R +++S +TKCI++DIK+N MTVG Y++VNPN+GH LP SHKL V V+S  G S+H+
Sbjct: 34  ESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFVTVSSPKGKSHHH 93

Query: 80  ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
           A+ V+SG+F FTA E GDYM CF A  + P     +DF+W++GV+AKDW+ +AK+G + +
Sbjct: 94  AENVESGKFVFTAEETGDYMTCFVAPGYRPTAKFAVDFEWKSGVEAKDWTTIAKRGQITM 153

Query: 140 MELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLW 199
           +E+E++KL D   +IH+EMF L ERE EMQELNR TNSRMA  S  S  + ++VAG+QL 
Sbjct: 154 LEVEVRKLLDVTETIHEEMFQLIEREREMQELNRSTNSRMAALSLLSFVVTMSVAGLQLR 213

Query: 200 HLKTFFEKKKLI 211
           HLK+F E+KKL+
Sbjct: 214 HLKSFLERKKLL 225

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6IDL4|P24D3_ARATH Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana GN=At1g09580 PE=1 SV=1

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/205 (42%), Positives = 141/205 (68%), Gaps = 5/205 (2%)

Query: 8   LVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTV 67
           L+ ++ ++    +++  ++    TKC++E+I+SN + +  Y +++  D   +P    ++V
Sbjct: 17  LLFLVPVMIPVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIIS-EDHEVMP---TISV 72

Query: 68  RVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHS-PQTTVTIDFDWRTGVQAK 126
           +VTS YGN+ H  + V  GQFAFT  E+G+Y+ACFWA + S     V+I+ DWRTG+ AK
Sbjct: 73  KVTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIAAK 132

Query: 127 DWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFS 186
           DW+++AKK  ++ +ELE++KL   V +IH+ + YLR RE +M+ ++  TNSR+AW+S  S
Sbjct: 133 DWASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNREADMRTMSEKTNSRVAWYSIMS 192

Query: 187 LFICIAVAGMQLWHLKTFFEKKKLI 211
           L +CIAV+G Q+ +LK +FEKKKLI
Sbjct: 193 LGVCIAVSGFQVLYLKQYFEKKKLI 217

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWM6|P24D5_ARATH Transmembrane emp24 domain-containing protein p24delta5 OS=Arabidopsis thaliana GN=At1g21900 PE=1 SV=1

 Score =  173 bits (438), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 123/182 (67%), Gaps = 4/182 (2%)

Query: 31  TKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAF 90
           TKC++E+I+SN + +  Y VV+ ++    P    ++ +VTS YGN+ H+ + V  GQFAF
Sbjct: 38  TKCVSEEIQSNVVVLADYYVVDEHNPENTP---AVSSKVTSPYGNNLHHQENVTHGQFAF 94

Query: 91  TAAEAGDYMACFWA-VDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYD 149
           T  EAG+Y+ACFW    H     +T+  DW+ G+ AKDW +VAKK  ++ +EL+L++L  
Sbjct: 95  TTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAAKDWDSVAKKEKIEGVELQLRRLEG 154

Query: 150 TVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKK 209
            V SI + + Y+++RE EM+E++  TNSR+AWFS  SL +C+ V G Q+ +LK +F KKK
Sbjct: 155 LVLSIRENLNYIKDREAEMREVSETTNSRVAWFSIMSLGVCVVVVGSQILYLKRYFHKKK 214

Query: 210 LI 211
           LI
Sbjct: 215 LI 216

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). Interacts with p24beta2 at endoplasmic reticulum export sites for endoplasmic reticulum exit and coupled transport to the Golgi apparatus. Once in the Golgi, interacts very efficiently with the COPI machinery for retrograde transport back to the endoplasmic reticulum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVU0|P24D4_ARATH Transmembrane emp24 domain-containing protein p24delta4 OS=Arabidopsis thaliana GN=At1g57620 PE=1 SV=1

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 87/212 (41%), Positives = 137/212 (64%), Gaps = 5/212 (2%)

Query: 1   MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLP 60
           MI  T+ L  +I  LS   +++   +    +KC++E+I+SN + +  Y V++  + H + 
Sbjct: 5   MIPTTILLSALIFSLSPICEAVWLTVPHTGSKCVSEEIQSNVIVLADYLVIS--EEHSIF 62

Query: 61  ESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHS-PQTTVTIDFDW 119
            +  ++V+VT+ YG   H+ +   +GQFAFT  E+G Y+ACF A   S      +I+ DW
Sbjct: 63  PT--VSVKVTAPYGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDW 120

Query: 120 RTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRM 179
           +TG+ AKDW ++A+K  ++ +ELE KKL   V +IH+ + YLR RE EM+ ++  TNSR+
Sbjct: 121 KTGIAAKDWDSIARKEKIEGVELEFKKLEGAVEAIHENLIYLRNREAEMRIVSEKTNSRV 180

Query: 180 AWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 211
           AW+S  SL ICI V+G+Q+ +LK +FEKKKLI
Sbjct: 181 AWYSIMSLGICIVVSGLQILYLKQYFEKKKLI 212

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|F4J4Y0|P24D6_ARATH Transmembrane emp24 domain-containing protein p24delta6 OS=Arabidopsis thaliana GN=At3g10780 PE=1 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 113/203 (55%), Gaps = 7/203 (3%)

Query: 13  GILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSA 72
           G L    +++   +  +  +C+ E+I++N + V  Y  ++       P    L VRVTS 
Sbjct: 18  GSLFPGVEAIWLTVPESGERCVYEEIQANVVVVLDYICIDDAFTQLGP---TLDVRVTSP 74

Query: 73  YGNSYHYADRVDSGQFAFTAAEAGDYMACFW----AVDHSPQTTVTIDFDWRTGVQAKDW 128
           YG   +    V  GQ AFT +E+G ++AC         HS  ++V +  DW+ G++AKDW
Sbjct: 75  YGKELYKIANVTHGQAAFTTSESGTFLACLAMHHDQSHHSVNSSVIVSLDWKMGIRAKDW 134

Query: 129 SNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLF 188
            +VAKK  ++ +ELE+++  +  S+I   + YLR RE  M+E+N  TN+R+      SL 
Sbjct: 135 DSVAKKEKIEGVELEIRRSTEYASAIRANILYLRIREAYMREINEKTNTRVNQLGLMSLG 194

Query: 189 ICIAVAGMQLWHLKTFFEKKKLI 211
           + I V+  Q+ +LK +F KKKLI
Sbjct: 195 VAIVVSISQVLYLKRYFLKKKLI 217

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9D1D4|TMEDA_MOUSE Transmembrane emp24 domain-containing protein 10 OS=Mus musculus GN=Tmed10 PE=2 SV=1

 Score =  110 bits (275), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 112/204 (54%), Gaps = 5/204 (2%)

Query: 8   LVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTV 67
            +L++G   S+   + F +     KC+ E+I  + +  G Y + + + G     +H   +
Sbjct: 20  FLLLLG--PSSVLGISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTH---L 74

Query: 68  RVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKD 127
           ++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK+
Sbjct: 75  KITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKN 134

Query: 128 WSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSL 187
           +  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+
Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 194

Query: 188 FICIAVAGMQLWHLKTFFEKKKLI 211
           F  I +A  Q+++L+ FF+ KKLI
Sbjct: 195 FCLIGLATWQVFYLRRFFKAKKLI 218

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED2 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport involved in the biogenesis of COPI vesicles and vesicle coat recruitment. On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation. Increases coatomer-dependent GTPase-activating activity of ARFGAP2. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2LR1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Involved in trafficking of amyloid beta A4 protein and soluble APP-beta release (independent of modulation of gamma-secretase activity). As part of the presenilin-dependent gamma-secretase complex regulates gamma-cleavages of the amyloid beta A4 protein to yield amyloid-beta 40 (Abeta40). Involved in organization of the Golgi apparatus.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
363807104	221	uncharacterized protein LOC100817584 pre	0.962	0.918	0.773	1e-94
225462930	218	PREDICTED: transmembrane emp24 domain-co	1.0	0.967	0.748	2e-94
255562952	215	Transmembrane emp24 domain-containing pr	0.962	0.944	0.753	1e-93
224098928	216	predicted protein [Populus trichocarpa]	0.976	0.953	0.747	2e-93
351726337	220	uncharacterized protein LOC100499866 pre	0.914	0.877	0.782	2e-91
388490748	218	unknown [Lotus japonicus]	0.914	0.885	0.777	1e-90
388500600	218	unknown [Lotus japonicus]	0.914	0.885	0.772	1e-90
118489897	214	unknown [Populus trichocarpa x Populus d	1.0	0.985	0.724	2e-90
224112183	214	predicted protein [Populus trichocarpa]	1.0	0.985	0.714	2e-89
449452048	213	PREDICTED: transmembrane emp24 domain-co	1.0	0.990	0.694	7e-89

>gi|363807104|ref|NP_001242591.1| uncharacterized protein LOC100817584 precursor [Glycine max] gi|255641664|gb|ACU21104.1| unknown [Glycine max]

 Score =  350 bits (899), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 157/203 (77%), Positives = 181/203 (89%)

Query: 9   VLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVR 68
           +L++ + SS+S+SLRFE+QS HTKCI+EDIKSNSMTVGKY +VN N+G PLP+SH++TVR
Sbjct: 19  LLILVLFSSSSESLRFELQSGHTKCISEDIKSNSMTVGKYQIVNSNEGQPLPDSHRVTVR 78

Query: 69  VTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDW 128
           VTS+YGN+YHY DRV +G FAF A EAGDYM CFWAVDH+P  T+T+DFDW+TGV AKDW
Sbjct: 79  VTSSYGNNYHYGDRVQTGHFAFAAVEAGDYMTCFWAVDHNPVETLTVDFDWKTGVAAKDW 138

Query: 129 SNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLF 188
           SNVAKKG VDVMELELKKL DTVSSIH+EMFYLREREEEMQELNR TNSRM W S  SLF
Sbjct: 139 SNVAKKGQVDVMELELKKLQDTVSSIHEEMFYLREREEEMQELNRTTNSRMFWLSLLSLF 198

Query: 189 ICIAVAGMQLWHLKTFFEKKKLI 211
           +C++VAGMQLWHLKTFFEKKKLI
Sbjct: 199 VCLSVAGMQLWHLKTFFEKKKLI 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462930|ref|XP_002267401.1| PREDICTED: transmembrane emp24 domain-containing protein bai-like [Vitis vinifera]

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 158/211 (74%), Positives = 184/211 (87%)

Query: 1   MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLP 60
           MI +   ++L +G L    QS+RFE++S HTKCIAEDIK++SMTVGKY+VVNPNDG+P+P
Sbjct: 8   MIGVVAGVILNLGFLLGGVQSIRFELESGHTKCIAEDIKADSMTVGKYSVVNPNDGYPIP 67

Query: 61  ESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWR 120
           +SHK+TVRVTSAYGN+YHYAD VDSGQFAF AAEAGDYMACFW V H P  T+TID DW+
Sbjct: 68  DSHKVTVRVTSAYGNNYHYADLVDSGQFAFPAAEAGDYMACFWVVYHKPPLTLTIDLDWK 127

Query: 121 TGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMA 180
           TGV AKDWSNVAKKG VDVMELELKKLYDTV+SIH+EMFYLR REEEMQELN+ TNSRMA
Sbjct: 128 TGVAAKDWSNVAKKGQVDVMELELKKLYDTVTSIHEEMFYLRGREEEMQELNQATNSRMA 187

Query: 181 WFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 211
           W S  SLF+C++VAG+QLWHLK FFE+KKL+
Sbjct: 188 WLSFLSLFVCLSVAGLQLWHLKNFFERKKLL 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562952|ref|XP_002522481.1| Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis] gi|223538366|gb|EEF39973.1| Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 153/203 (75%), Positives = 182/203 (89%)

Query: 9   VLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVR 68
           + ++G+LSST++SLRF++QS  TKCIAEDI+SN+MTVGKY+VVNPN+G PLP +H LTVR
Sbjct: 13  ISIVGLLSSTTESLRFDLQSGQTKCIAEDIQSNAMTVGKYSVVNPNEGQPLPTTHSLTVR 72

Query: 69  VTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDW 128
           VTS+YGNSYHYA+ V SGQFAFTAAEAGDYM CFWA DH PQ T+T+DFDW+TGV AKDW
Sbjct: 73  VTSSYGNSYHYAEHVPSGQFAFTAAEAGDYMTCFWAADHKPQVTLTVDFDWKTGVAAKDW 132

Query: 129 SNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLF 188
           +NVAKKGS+DVMELELKKL+DTV SI +EM+ LREREE+MQELNR TNSRM WFS  SL 
Sbjct: 133 TNVAKKGSIDVMELELKKLHDTVISIQEEMYSLREREEQMQELNRATNSRMGWFSFLSLI 192

Query: 189 ICIAVAGMQLWHLKTFFEKKKLI 211
           +C++VAG+Q+WHLKTFFEKKKLI
Sbjct: 193 VCLSVAGLQVWHLKTFFEKKKLI 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098928|ref|XP_002311321.1| predicted protein [Populus trichocarpa] gi|118483721|gb|ABK93754.1| unknown [Populus trichocarpa] gi|222851141|gb|EEE88688.1| predicted protein [Populus trichocarpa]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 154/206 (74%), Positives = 185/206 (89%)

Query: 6   LTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKL 65
           L ++ VIG+LSS S+SLRFE++S HTKCI+EDIKSNSMTVGKY++VNP+D  PLPESHKL
Sbjct: 11  LVIMTVIGLLSSPSKSLRFELESGHTKCISEDIKSNSMTVGKYSIVNPHDSQPLPESHKL 70

Query: 66  TVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQA 125
           TVRVTS+YGNSYHY++RV+SGQFAFTAAEAGDYMACFWA DH P  T+++DFDW+TGV A
Sbjct: 71  TVRVTSSYGNSYHYSERVESGQFAFTAAEAGDYMACFWAADHKPTVTLSVDFDWKTGVAA 130

Query: 126 KDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGF 185
           KDWSNVAKKGSVDVME+ELKK+YDTV SI +EM YLRERE+EMQ+LN  TN +MAW S  
Sbjct: 131 KDWSNVAKKGSVDVMEMELKKMYDTVISIQEEMNYLREREDEMQDLNTSTNVKMAWLSFL 190

Query: 186 SLFICIAVAGMQLWHLKTFFEKKKLI 211
           S+ +C++VAG+Q+WHLKTFF+KKKLI
Sbjct: 191 SIIVCLSVAGLQVWHLKTFFQKKKLI 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726337|ref|NP_001237123.1| uncharacterized protein LOC100499866 precursor [Glycine max] gi|255627251|gb|ACU13970.1| unknown [Glycine max]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 151/193 (78%), Positives = 174/193 (90%)

Query: 19  SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
           ++SLRFEIQS HTKCI+EDIKSNSMTVGKY +V+PN+G PLP++H+ TVRVTS+YGN+YH
Sbjct: 28  TESLRFEIQSGHTKCISEDIKSNSMTVGKYQIVSPNEGQPLPDAHRFTVRVTSSYGNNYH 87

Query: 79  YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
           Y DRV +GQFAF A EAGDYM CFWAVDH+P  T+T+DFDW+TGV AKDWSNVAKKG VD
Sbjct: 88  YGDRVQTGQFAFAAVEAGDYMTCFWAVDHNPVETLTVDFDWKTGVAAKDWSNVAKKGQVD 147

Query: 139 VMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQL 198
           VMELELKKL DTVSSIH+EMFYLRE+EEEMQELNR T+SRM W S  SLF+C++VAGMQ+
Sbjct: 148 VMELELKKLQDTVSSIHEEMFYLREKEEEMQELNRTTSSRMFWLSLLSLFVCLSVAGMQI 207

Query: 199 WHLKTFFEKKKLI 211
           WHLKTFFEKKKLI
Sbjct: 208 WHLKTFFEKKKLI 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490748|gb|AFK33440.1| unknown [Lotus japonicus]

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 150/193 (77%), Positives = 176/193 (91%)

Query: 19  SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
           ++SLRFE+QS HTKCI+EDIKSNSMTVGKY+++NPN+G PLP++H++TVRVTS+YGN+YH
Sbjct: 26  TESLRFELQSGHTKCISEDIKSNSMTVGKYSIINPNEGFPLPDTHRVTVRVTSSYGNNYH 85

Query: 79  YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
           Y DRV+SGQFAF AAEAGDYM+CFWA  H+P  T+TIDF+W+TGV AKDWSNVAKKG VD
Sbjct: 86  YGDRVESGQFAFVAAEAGDYMSCFWAAVHTPAITLTIDFEWKTGVAAKDWSNVAKKGQVD 145

Query: 139 VMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQL 198
           VMELELKKL DTVSSIH+EMFYLREREEEMQ+LNR TNSRM W S  SLF+C++VAG QL
Sbjct: 146 VMELELKKLQDTVSSIHEEMFYLREREEEMQDLNRATNSRMFWLSLVSLFVCLSVAGAQL 205

Query: 199 WHLKTFFEKKKLI 211
           WHLK+FFEKKKLI
Sbjct: 206 WHLKSFFEKKKLI 218

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500600|gb|AFK38366.1| unknown [Lotus japonicus]

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 149/193 (77%), Positives = 176/193 (91%)

Query: 19  SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
           ++SLRFE+QS HTKCI+EDIKSNSMTVGKY+++NP +G PLP++H++TVRVTS+YGN+YH
Sbjct: 26  TESLRFELQSGHTKCISEDIKSNSMTVGKYSIINPTEGFPLPDTHRVTVRVTSSYGNNYH 85

Query: 79  YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
           Y DRV+SGQFAF AAEAGDYM+CFWA DH+P  T+TIDF+W+TGV AKDWSNVAKKG VD
Sbjct: 86  YGDRVESGQFAFVAAEAGDYMSCFWAADHTPAITLTIDFEWKTGVAAKDWSNVAKKGQVD 145

Query: 139 VMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQL 198
           VMELELKKL DTVSSIH+EMFYLREREEEMQ+LNR TNS+M W S  SLF+C++VAG QL
Sbjct: 146 VMELELKKLQDTVSSIHEEMFYLREREEEMQDLNRATNSKMFWLSLVSLFVCLSVAGAQL 205

Query: 199 WHLKTFFEKKKLI 211
           WHLK+FFEKKKLI
Sbjct: 206 WHLKSFFEKKKLI 218

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489897|gb|ABK96746.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 155/214 (72%), Positives = 186/214 (86%), Gaps = 3/214 (1%)

Query: 1   MIRLTLTLVL---VIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGH 57
           M R  L L+L   VI ILSSTS+S+RFE+QS +TKCIAEDIKSNSMTVGKY++VNP+DG 
Sbjct: 1   MSRFNLYLLLITTVIAILSSTSKSIRFELQSGNTKCIAEDIKSNSMTVGKYSIVNPHDGQ 60

Query: 58  PLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDF 117
           PLP S+KLTVRVTS+YGN+YH+++ V+SGQFAFTA+EAGDYMACFWA DH P  T+ IDF
Sbjct: 61  PLPASYKLTVRVTSSYGNNYHHSELVESGQFAFTASEAGDYMACFWAADHKPAVTLNIDF 120

Query: 118 DWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNS 177
           DW+TGV AKDW+NVAKKGSVDVMELELKK+YDTV S+ +EM YLREREEEMQ+LN  TN 
Sbjct: 121 DWKTGVAAKDWTNVAKKGSVDVMELELKKMYDTVISVQEEMNYLREREEEMQDLNISTNV 180

Query: 178 RMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 211
           +MAW S  S+ +C++VAG+Q+WHLKTFF+KKKLI
Sbjct: 181 KMAWLSFLSIAVCLSVAGLQVWHLKTFFQKKKLI 214

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112183|ref|XP_002316111.1| predicted protein [Populus trichocarpa] gi|224112187|ref|XP_002316113.1| predicted protein [Populus trichocarpa] gi|118482364|gb|ABK93105.1| unknown [Populus trichocarpa] gi|222865151|gb|EEF02282.1| predicted protein [Populus trichocarpa] gi|222865153|gb|EEF02284.1| predicted protein [Populus trichocarpa]

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 153/214 (71%), Positives = 186/214 (86%), Gaps = 3/214 (1%)

Query: 1   MIRLTLTLVL---VIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGH 57
           M R  L L+L   VI ILSSTS+S+RFE++S +TKCIAEDIKSNSMTVGKY++VNP+DG 
Sbjct: 1   MSRFNLYLLLITTVIAILSSTSKSIRFELESGNTKCIAEDIKSNSMTVGKYSIVNPHDGQ 60

Query: 58  PLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDF 117
           PLP+S+KLTVRVTS+ GN+YH+++ V+SGQFAFTA+EAGDYMACFWA DH P  T+ IDF
Sbjct: 61  PLPDSYKLTVRVTSSSGNNYHHSELVESGQFAFTASEAGDYMACFWAADHKPAVTLNIDF 120

Query: 118 DWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNS 177
           DW+TGV AKDW+NVAKKGSVDVMELELKK+YDTV S+ +EM YLREREEEMQ+LN  TN 
Sbjct: 121 DWKTGVAAKDWTNVAKKGSVDVMELELKKMYDTVISVQEEMNYLREREEEMQDLNISTNV 180

Query: 178 RMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 211
           +MAW S  S+ +C++VAG+Q+WHLKTFF+KKKLI
Sbjct: 181 KMAWLSFLSIVVCLSVAGLQVWHLKTFFQKKKLI 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452048|ref|XP_004143772.1| PREDICTED: transmembrane emp24 domain-containing protein p24delta9-like [Cucumis sativus] gi|449486527|ref|XP_004157323.1| PREDICTED: transmembrane emp24 domain-containing protein p24delta9-like [Cucumis sativus]

 Score =  332 bits (850), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 148/213 (69%), Positives = 184/213 (86%), Gaps = 2/213 (0%)

Query: 1   MIRLT--LTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHP 58
           M+R      L+++IG LSS S+SLRF++QS HTKCI+EDIK N+MTVGKY+VVNPN+G P
Sbjct: 1   MVRFVAAFHLLVLIGFLSSRSESLRFDLQSGHTKCISEDIKQNAMTVGKYHVVNPNEGQP 60

Query: 59  LPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFD 118
           L +  KL VRVTSA GN+YHY+D+V+SGQF F AAEAGD+MACFWA DH P  T+++DFD
Sbjct: 61  LTDERKLIVRVTSATGNTYHYSDKVESGQFGFVAAEAGDFMACFWAPDHQPIVTLSVDFD 120

Query: 119 WRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSR 178
           WRTGV AKDWSNVAKKGSV+VMELEL+KL++T +SI +EM+YLREREEEMQ+LN+ TN++
Sbjct: 121 WRTGVAAKDWSNVAKKGSVEVMELELQKLFETANSIQEEMYYLREREEEMQDLNKSTNTK 180

Query: 179 MAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 211
           MAW S  SLF+C++VAG+Q+WHLKTFFEKKKLI
Sbjct: 181 MAWLSLLSLFVCLSVAGLQIWHLKTFFEKKKLI 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2200630	214	AT1G26690 [Arabidopsis thalian	0.914	0.901	0.720	1.6e-77
TAIR|locus:2007196	214	AT1G69460 [Arabidopsis thalian	0.914	0.901	0.678	5.9e-73
TAIR|locus:2014864	212	AT1G14010 [Arabidopsis thalian	0.905	0.900	0.643	7.7e-71
TAIR|locus:2056976	213	AT2G03290 [Arabidopsis thalian	0.905	0.896	0.630	3.1e-67
TAIR|locus:2092788	225	AT3G29070 [Arabidopsis thalian	0.909	0.853	0.546	2.2e-57
TAIR|locus:2056730	166	AT2G03040 [Arabidopsis thalian	0.682	0.867	0.586	3e-46
TAIR|locus:2012335	217	AT1G09580 [Arabidopsis thalian	0.890	0.866	0.445	3.9e-44
TAIR|locus:2201098	216	p24delta5 "p24 subfamily delta	0.838	0.819	0.453	2.2e-41
TAIR|locus:2206520	212	AT1G57620 [Arabidopsis thalian	0.843	0.839	0.443	9.9e-39
DICTYBASE|DDB_G0277923	221	empD "emp24/gp25L/p24 family p	0.909	0.868	0.348	2.9e-25

TAIR|locus:2200630 AT1G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 139/193 (72%), Positives = 169/193 (87%)

Query:    19 SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
             SQSL FE+QS  TKCI+EDIKSNSMTVGKY VVNPN+ HP P+SHK+++RVTS+YGN+YH
Sbjct:    22 SQSLHFELQSGRTKCISEDIKSNSMTVGKYTVVNPNEAHPSPQSHKISIRVTSSYGNTYH 81

Query:    79 YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
             +A+ V+SGQFAFTA E+GDYMAC+ AVDH P+ T++IDFDWRTGVQ+K WS+VAKK  V+
Sbjct:    82 HAEDVESGQFAFTAVESGDYMACYTAVDHKPEVTLSIDFDWRTGVQSKSWSSVAKKSQVE 141

Query:   139 VMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQL 198
             VME ++K+L +TV+SIH+EMFYLREREEEMQ LNR TNS+MAW S  SLF+C+ VAGMQ 
Sbjct:   142 VMEFDVKRLIETVNSIHEEMFYLREREEEMQNLNRATNSKMAWLSFLSLFVCLGVAGMQF 201

Query:   199 WHLKTFFEKKKLI 211
              HLKTFFEKKK+I
Sbjct:   202 VHLKTFFEKKKVI 214

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2007196 AT1G69460 [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 131/193 (67%), Positives = 165/193 (85%)

Query:    19 SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
             S SL F++ S  TKCIAEDIKSNSMTVGKYN+ NP++G  LP++HK++V+VTS  GN+YH
Sbjct:    22 SHSLHFDLHSGRTKCIAEDIKSNSMTVGKYNIDNPHEGQALPQTHKISVKVTSNSGNNYH 81

Query:    79 YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
             +A++VDSGQFAF+A EAGDYMACF AVDH P+ +++IDF+W+TGVQ+K W+NVAKK  V+
Sbjct:    82 HAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEVSLSIDFEWKTGVQSKSWANVAKKSQVE 141

Query:   139 VMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQL 198
             VME E+K L DTV+SIH+EM+YLR+REEEMQ+LNR TN++MAW S  S F+CI VAGMQ 
Sbjct:   142 VMEFEVKSLLDTVNSIHEEMYYLRDREEEMQDLNRSTNTKMAWLSVLSFFVCIGVAGMQF 201

Query:   199 WHLKTFFEKKKLI 211
              HLKTFFEKKK+I
Sbjct:   202 LHLKTFFEKKKVI 214

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2014864 AT1G14010 [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 123/191 (64%), Positives = 158/191 (82%)

Query:    21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA 80
             S+R+E+ S HTKCI+E+I +N+MT+GKY+++NP++ HPLP SHK+TVRVTS  G +YH +
Sbjct:    22 SIRYELLSGHTKCISEEIHANAMTIGKYSIINPHEDHPLPSSHKVTVRVTSPQGTAYHES 81

Query:    81 DRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVM 140
             D V+SGQF+F A E GDY++CF AVDH P+TT+ IDFDWRTG+  KDWSNVAKK  V+ M
Sbjct:    82 DGVESGQFSFVAVETGDYISCFSAVDHKPETTLIIDFDWRTGIHTKDWSNVAKKSQVETM 141

Query:   141 ELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWH 200
             E E+KKL++TV+ IH EMFYLR+REEEM  LN  TNS+MAW S  SL +C++VAG+Q WH
Sbjct:   142 EFEVKKLFETVNGIHDEMFYLRDREEEMHNLNIATNSKMAWLSFVSLAVCLSVAGLQFWH 201

Query:   201 LKTFFEKKKLI 211
             LKTFF+KKKLI
Sbjct:   202 LKTFFQKKKLI 212

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2056976 AT2G03290 [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 121/192 (63%), Positives = 158/192 (82%)

Query:    21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPN-DGHPLPESHKLTVRVTSAYGNSYHY 79
             S+R+E++S+ TKCI E+I  N+M++GKY +VNPN D HPLP+SHK+ V+V    G + H 
Sbjct:    22 SMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDNHPLPDSHKIIVKVMPPQGKNLHE 81

Query:    80 ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
             AD+V++GQF+FTA E G Y+AC  A+D+ P+TT+TIDFDW+TGV +K+W+NVAKK  VD+
Sbjct:    82 ADKVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDWKTGVHSKEWTNVAKKSQVDM 141

Query:   140 MELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLW 199
             ME ++K L DTV SIH+EM+YLREREEEMQELNR TNS+MAW S  SL +C++VAG+Q W
Sbjct:   142 MEYQVKTLMDTVISIHEEMYYLREREEEMQELNRSTNSKMAWLSFGSLVVCLSVAGLQFW 201

Query:   200 HLKTFFEKKKLI 211
             HLKTFFEKKKLI
Sbjct:   202 HLKTFFEKKKLI 213

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2092788 AT3G29070 [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 105/192 (54%), Positives = 147/192 (76%)

Query:    20 QSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY 79
             +S+R +++S +TKCI++DIK+N MTVG Y++VNPN+GH LP SHKL V V+S  G S+H+
Sbjct:    34 ESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFVTVSSPKGKSHHH 93

Query:    80 ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
             A+ V+SG+F FTA E GDYM CF A  + P     +DF+W++GV+AKDW+ +AK+G + +
Sbjct:    94 AENVESGKFVFTAEETGDYMTCFVAPGYRPTAKFAVDFEWKSGVEAKDWTTIAKRGQITM 153

Query:   140 MELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLW 199
             +E+E++KL D   +IH+EMF L ERE EMQELNR TNSRMA  S  S  + ++VAG+QL 
Sbjct:   154 LEVEVRKLLDVTETIHEEMFQLIEREREMQELNRSTNSRMAALSLLSFVVTMSVAGLQLR 213

Query:   200 HLKTFFEKKKLI 211
             HLK+F E+KKL+
Sbjct:   214 HLKSFLERKKLL 225

GO:0005739 "mitochondrion" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2056730 AT2G03040 [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 85/145 (58%), Positives = 116/145 (80%)

Query:    21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPN-DGHPLPESHKLTVRVTSAYGNSYHY 79
             S+R+E++S+ TKCI E+I  N+M++GKY +VNPN D HPLP+SHK+ V+V    G + H 
Sbjct:    22 SMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDHHPLPDSHKIIVKVMPPQGKNLHE 81

Query:    80 ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
             AD V++GQF+FTA E G Y+AC  A+D+ P+TT+TIDFDW+TGV +K+W+NVAKK  VD+
Sbjct:    82 ADNVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDWKTGVHSKEWTNVAKKSQVDM 141

Query:   140 MELELKKLYDTVSSIHQEMFYLRER 164
             ME ++K L DTV SIH+EM+YLRER
Sbjct:   142 MEYQVKTLMDTVISIHEEMYYLRER 166

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2012335 AT1G09580 [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 86/193 (44%), Positives = 135/193 (69%)

Query:    20 QSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY 79
             +++  ++    TKC++E+I+SN + +  Y +++  D   +P    ++V+VTS YGN+ H 
Sbjct:    29 EAVWLDVPPTGTKCVSEEIQSNVVVLADYLIIS-EDHEVMPT---ISVKVTSPYGNNLHN 84

Query:    80 ADRVDSGQFAFTAAEAGDYMACFWAVDHSP-QTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
              + V  GQFAFT  E+G+Y+ACFWA + S     V+I+ DWRTG+ AKDW+++AKK  ++
Sbjct:    85 MENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIAAKDWASIAKKEKIE 144

Query:   139 VMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQL 198
              +ELE++KL   V +IH+ + YLR RE +M+ ++  TNSR+AW+S  SL +CIAV+G Q+
Sbjct:   145 GVELEIRKLEGAVEAIHENILYLRNREADMRTMSEKTNSRVAWYSIMSLGVCIAVSGFQV 204

Query:   199 WHLKTFFEKKKLI 211
              +LK +FEKKKLI
Sbjct:   205 LYLKQYFEKKKLI 217

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2201098 p24delta5 "p24 subfamily delta 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 83/183 (45%), Positives = 124/183 (67%)

Query:    31 TKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAF 90
             TKC++E+I+SN + +  Y VV   D H    +  ++ +VTS YGN+ H+ + V  GQFAF
Sbjct:    38 TKCVSEEIQSNVVVLADYYVV---DEHNPENTPAVSSKVTSPYGNNLHHQENVTHGQFAF 94

Query:    91 TAAEAGDYMACFWAVD--HSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLY 148
             T  EAG+Y+ACFW +D  H     +T+  DW+ G+ AKDW +VAKK  ++ +EL+L++L 
Sbjct:    95 TTQEAGNYLACFW-IDSSHHLANPITLGVDWKMGIAAKDWDSVAKKEKIEGVELQLRRLE 153

Query:   149 DTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKK 208
               V SI + + Y+++RE EM+E++  TNSR+AWFS  SL +C+ V G Q+ +LK +F KK
Sbjct:   154 GLVLSIRENLNYIKDREAEMREVSETTNSRVAWFSIMSLGVCVVVVGSQILYLKRYFHKK 213

Query:   209 KLI 211
             KLI
Sbjct:   214 KLI 216

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0030134 "ER to Golgi transport vesicle" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2206520 AT1G57620 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 82/185 (44%), Positives = 125/185 (67%)

Query:    30 HT--KCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQ 87
             HT  KC++E+I+SN + +  Y V++  + H +  +  ++V+VT+ YG   H+ +   +GQ
Sbjct:    32 HTGSKCVSEEIQSNVIVLADYLVIS--EEHSIFPT--VSVKVTAPYGTVLHHRENTTNGQ 87

Query:    88 FAFTAAEAGDYMACFWAVDHSP-QTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKK 146
             FAFT  E+G Y+ACF A   S      +I+ DW+TG+ AKDW ++A+K  ++ +ELE KK
Sbjct:    88 FAFTTQESGTYLACFEADAKSHGNKDFSINIDWKTGIAAKDWDSIARKEKIEGVELEFKK 147

Query:   147 LYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFE 206
             L   V +IH+ + YLR RE EM+ ++  TNSR+AW+S  SL ICI V+G+Q+ +LK +FE
Sbjct:   148 LEGAVEAIHENLIYLRNREAEMRIVSEKTNSRVAWYSIMSLGICIVVSGLQILYLKQYFE 207

Query:   207 KKKLI 211
             KKKLI
Sbjct:   208 KKKLI 212

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0277923 empD "emp24/gp25L/p24 family protein D" [Dictyostelium discoideum (taxid:44689)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 71/204 (34%), Positives = 110/204 (53%)

Query:    19 SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNV---VNPNDGHP---LPESHKLTVRVTSA 72
             S S  FE+++A  KCI E+ + +++  GK+ V   ++ N       +  S ++   V   
Sbjct:    19 SYSFMFEVRAADEKCIVEEFRQDTLVNGKFEVSDRLSKNIAFQYEVVMASMQMKFYVRGP 78

Query:    73 YGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTV-----TIDFDWRTGVQAKD 127
              G+         +G  AF A EAGDY  CF   ++ P         T+  + +TGV+A D
Sbjct:    79 TGDLILVNHDASTGVIAFNAQEAGDYSFCFLD-NYRPGAQAMPLSRTVSLEIKTGVEAND 137

Query:   128 WSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSL 187
             +S+V  KG +   E+ELKK+ D V SI  E+ Y++ REE M+  N  TNSR+A  S F  
Sbjct:   138 YSDVITKGQLKPSEIELKKIEDVVDSIKVEILYMKNREETMRNTNESTNSRVANLSIFCF 197

Query:   188 FICIAVAGMQLWHLKTFFEKKKLI 211
             F+ I  A  Q+ +LK +F+++KLI
Sbjct:   198 FVLIGSAAFQINYLKRYFKQRKLI 221

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49755	TMEDA_HUMAN	No assigned EC number	0.3036	0.8909	0.8584	yes	no
Q5RE32	TMEDA_PONAB	No assigned EC number	0.3036	0.8909	0.8584	yes	no
Q9LQY3	P24D9_ARATH	No assigned EC number	0.6975	0.9715	0.9579	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	5e-54

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score =  170 bits (432), Expect = 5e-54
 Identities = 67/189 (35%), Positives = 105/189 (55%), Gaps = 14/189 (7%)

Query: 21  SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNS---Y 77
           +L FE+ +   +C  E++   ++  G Y V++  +         +   +T   GN    Y
Sbjct: 1   ALTFELPAGEKECFYEEVPKGTLVTGSYQVISGGN-------LDIDFTITDPDGNGNVIY 53

Query: 78  HYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSV 137
              DR   G+F+FTA E+G+Y  CF     S  ++ T+ FD + G +AKD   +AKK  +
Sbjct: 54  SKEDRKSGGKFSFTATESGEYKFCFSN-SFSTFSSKTVSFDIKVGEEAKD---IAKKEKL 109

Query: 138 DVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQ 197
           D +E ELKKL D ++ I +E  YLRERE   +E N  TNSR+ W+S   + + I V+ +Q
Sbjct: 110 DPLEEELKKLEDQLNDIKREQKYLREREARHRETNESTNSRVVWWSIIQILVLIGVSVLQ 169

Query: 198 LWHLKTFFE 206
           +++LK FFE
Sbjct: 170 VYYLKRFFE 178

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG1691	210	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1692	201	consensus Putative cargo transport protein EMP24 (	100.0
KOG1690	215	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1693	209	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG3287	236	consensus Membrane trafficking protein, emp24/gp25	100.0
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	100.0
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	95.41
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	93.54
PF04151	70	PPC: Bacterial pre-peptidase C-terminal domain; In	93.09
PF00630	101	Filamin: Filamin/ABP280 repeat; InterPro: IPR01786	90.27
PF13860	81	FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.	89.78
PF05753	181	TRAP_beta: Translocon-associated protein beta (TRA	88.19
PF09315	179	DUF1973: Domain of unknown function (DUF1973); Int	87.61
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	87.26
PRK12813	223	flgD flagellar basal body rod modification protein	84.46
PRK06655	225	flgD flagellar basal body rod modification protein	84.41
PRK12812	259	flgD flagellar basal body rod modification protein	83.14
TIGR03503	374	conserved hypothetical protein TIGR03503. This set	82.61
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	82.55
PRK12633	230	flgD flagellar basal body rod modification protein	80.02

>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.7e-48  Score=292.38  Aligned_cols=207  Identities=53%  Similarity=0.885  Sum_probs=190.8

Q ss_pred             ChhHHHHHHHHHHHHhhcceeEEEEEeCCCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEee
Q 028261            1 MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA   80 (211)
Q Consensus         1 ~~~~~~~~~~~l~~l~~~~~~l~f~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~   80 (211)
                      |++.+..+++++++++..+.|+.|+++++.+.|+.|++.++..+.|.|.+.++..+.    .+.+++.|+||.|+.+++.
T Consensus         2 ~~~~~~~~l~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~----~~~~~~~Vts~~G~~~~~~   77 (210)
T KOG1691|consen    2 MMPCLSLLLLIFLLLLPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDH----SHKLSVKVTSPYGNNLHSK   77 (210)
T ss_pred             ccHhHHHHHHHHHHHhhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCc----cceEEEEEEcCCCceeehh
Confidence            455666666677778899999999999999999999999999999999999876321    1579999999999999999


Q ss_pred             eccceeeEEEEeeecccEEEEEEecC--CCCceeEEEEEEEeeCccccCchhhhhcCCCChHHHHHHHHHHHHHHHHHHH
Q 028261           81 DRVDSGQFAFTAAEAGDYMACFWAVD--HSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEM  158 (211)
Q Consensus        81 ~~~~~g~~~f~~~~~G~y~~Cf~n~~--~~~~~~v~v~~~~~~g~~~~~~~~~ak~e~~~~l~~~l~~l~~~l~~i~~~q  158 (211)
                      ++.++|+|+|++.++|.|..||.+..  ..+.....|+||++.|.+++||+++||+++++|+|-++.+|++.+..|.++.
T Consensus        78 env~~gqFaFta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~  157 (210)
T KOG1691|consen   78 ENVTKGQFAFTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEM  157 (210)
T ss_pred             hccccceEEEEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999943  3344568999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 028261          159 FYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI  211 (211)
Q Consensus       159 ~~~~~re~~~~~~~es~~~rv~~~sii~~~vli~~~~~Qv~~lk~fF~~KklI  211 (211)
                      .|++.||+++|+++|+||+|+.|+|++-+++++++++||++|||+||++||+|
T Consensus       158 ~YLr~REeemr~~nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKKLI  210 (210)
T KOG1691|consen  158 YYLREREEEMRNTNESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKKLI  210 (210)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999998

>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.8e-48  Score=286.01  Aligned_cols=187  Identities=25%  Similarity=0.433  Sum_probs=169.1

Q ss_pred             HhhcceeEEEEEeCCCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeeccceeeEEEEeee
Q 028261           15 LSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAE   94 (211)
Q Consensus        15 l~~~~~~l~f~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~~   94 (211)
                      |+..+.+..+.+++.+++||+|++.+|+.++++|+|.+++       ..++++.|++|+|+.+++..+...|+|+|+++.
T Consensus        14 L~~~~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg-------~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~   86 (201)
T KOG1692|consen   14 LFISAAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGG-------FLGVDVEITGPDGKIIHKGKRESSGKYTFTAPK   86 (201)
T ss_pred             HHHHhhheeEEEccchhhhHhhhhccCCEEEEEEEEecCC-------ccceeEEEECCCCchhhhcccccCceEEEEecC
Confidence            3344889999999999999999999999999999999875       579999999999999999998899999999999


Q ss_pred             cccEEEEEEecCCC-CceeEEEEEEEeeCccccCchhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261           95 AGDYMACFWAVDHS-PQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNR  173 (211)
Q Consensus        95 ~G~y~~Cf~n~~~~-~~~~v~v~~~~~~g~~~~~~~~~ak~e~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~e  173 (211)
                      +|.|++||.|..+. .++.  |.|+++.|.... .++.++.++.+++++.+.+|...+..++.||+|+..|+++||.++|
T Consensus        87 ~G~Y~fCF~N~~s~mtpk~--V~F~ihvg~~~~-~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~nE  163 (201)
T KOG1692|consen   87 KGTYTFCFSNKMSTMTPKT--VMFTIHVGHAPQ-RDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARERIHRNTNE  163 (201)
T ss_pred             CceEEEEecCCCCCCCceE--EEEEEEEeeccc-cchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence            99999999999885 3554  556666676543 3456788888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 028261          174 VTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI  211 (211)
Q Consensus       174 s~~~rv~~~sii~~~vli~~~~~Qv~~lk~fF~~KklI  211 (211)
                      +|++||.|||+.|.+++|+++++|||||||||+.|++.
T Consensus       164 ntn~RVv~wsife~~vLi~~s~~QVyYLkRfFEvkrvv  201 (201)
T KOG1692|consen  164 NTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFEVKRVV  201 (201)
T ss_pred             cccceeehHHHHHHHHHHHHHHHHHHHHHHhheeeecC
Confidence            99999999999999999999999999999999999863

>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-45  Score=275.20  Aligned_cols=204  Identities=26%  Similarity=0.416  Sum_probs=180.1

Q ss_pred             HHHHHHHHHHhhcceeEEEEEeCCCcceEEEEcCCCcEEEEEEEEecCCCC--CC-CCCCceEEEEEEcCCCC--eEEee
Q 028261            6 LTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDG--HP-LPESHKLTVRVTSAYGN--SYHYA   80 (211)
Q Consensus         6 ~~~~~~l~~l~~~~~~l~f~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~--~~-~~~~~~i~~~v~~p~g~--~i~~~   80 (211)
                      .-++++|++|+..+.|++|++.+++++||++++|+|+.+.|+|.+.--+..  .| ...+.++.+.|.+|.++  +|.++
T Consensus         5 ~~~~lll~~l~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q   84 (215)
T KOG1690|consen    5 MRLLLLLLLLATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQ   84 (215)
T ss_pred             HHHHHHHHHHHhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEee
Confidence            345667777899999999999999999999999999999999998643322  12 22256899999999877  89999


Q ss_pred             eccceeeEEEEeeecccEEEEEEecCCC--CceeEEEEEEEeeCccccCchhhhhcCCCChHHHHHHHHHHHHHHHHHHH
Q 028261           81 DRVDSGQFAFTAAEAGDYMACFWAVDHS--PQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEM  158 (211)
Q Consensus        81 ~~~~~g~~~f~~~~~G~y~~Cf~n~~~~--~~~~v~v~~~~~~g~~~~~~~~~ak~e~~~~l~~~l~~l~~~l~~i~~~q  158 (211)
                      +..++|+|+|++..+|+|+||+....+.  .+...+|++|+++|.++.++..  .++..+.++..+..|.+++..|+.||
T Consensus        85 ~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a~--~ke~~k~l~~Rv~~L~~~~~~IrkEQ  162 (215)
T KOG1690|consen   85 QYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDAQ--IKETDKLLEGRVRQLNSRLESIRKEQ  162 (215)
T ss_pred             cCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhhh--hhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988764  4567899999999998877644  45667788889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 028261          159 FYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI  211 (211)
Q Consensus       159 ~~~~~re~~~~~~~es~~~rv~~~sii~~~vli~~~~~Qv~~lk~fF~~KklI  211 (211)
                      .++|.||+++|++.||+|+|++||+++|+++++++|+||+.+||+||.+||++
T Consensus       163 ~~~R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqKlv  215 (215)
T KOG1690|consen  163 NLQREREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQKLV  215 (215)
T ss_pred             HHHHHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999985

>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-42  Score=257.25  Aligned_cols=200  Identities=22%  Similarity=0.376  Sum_probs=171.2

Q ss_pred             hhHHHHH--HHHHHHHhhcceeEEEEEeCCCcceEEEEcCCCcE-EEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEE
Q 028261            2 IRLTLTL--VLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSM-TVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH   78 (211)
Q Consensus         2 ~~~~~~~--~~~l~~l~~~~~~l~f~l~~g~~~Cf~~~v~~~~~-i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~   78 (211)
                      .++...+  +++++++++.+..++|+||++.++|||+++++++. ++.+|.|..|+       +++|++.|++|+|++|+
T Consensus         2 ~~~~~v~~~~~lla~~~s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG-------~fDVD~~I~aPdgkvI~   74 (209)
T KOG1693|consen    2 PTLIVVLFQLLLLALLFSEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGG-------HFDVDYDIEAPDGKVIY   74 (209)
T ss_pred             ceeHHHHHHHHHHHHHhhhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCC-------ceeeEEEEECCCCCEEe
Confidence            3444444  45556667778899999999999999999999765 99999999886       68999999999999999


Q ss_pred             eeeccceeeEEEEeeecccEEEEEEecCCCCceeEEEEEEEeeCccccCchhh-hhcCCCChHHHHHHHHHHHHHHHHHH
Q 028261           79 YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNV-AKKGSVDVMELELKKLYDTVSSIHQE  157 (211)
Q Consensus        79 ~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~~~~~v~v~~~~~~g~~~~~~~~~-ak~e~~~~l~~~l~~l~~~l~~i~~~  157 (211)
                      +.+++..+.|.|++...|+|++||+|..+. .....+.++++.|.+.+-.+.. ++....+.++..+..++..|+.|.+.
T Consensus        75 ~~~kk~~~~~~f~ae~~G~Y~fCFsN~fst-f~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~  153 (209)
T KOG1693|consen   75 SEKKKRYDSFLFKAEGKGEYTFCFSNEFST-FSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDT  153 (209)
T ss_pred             eccccccccEEEEEecceEEEEEecCcccc-ccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999899999999999999999999999877 3344567777777543322222 12223578999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 028261          158 MFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKK  209 (211)
Q Consensus       158 q~~~~~re~~~~~~~es~~~rv~~~sii~~~vli~~~~~Qv~~lk~fF~~Kk  209 (211)
                      |.|+|.||.|.+.+++|+++|++|||++++++++++++.|+..||.||..|+
T Consensus       154 q~y~R~RE~rn~~tv~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r  205 (209)
T KOG1693|consen  154 QTYYRLREARNRSTVESTNSRVTWWSLLEIIAVVVISIAQVFILKFFFTDRR  205 (209)
T ss_pred             HHHHHHHHhcCccchhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999876

>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.5e-37  Score=232.79  Aligned_cols=184  Identities=18%  Similarity=0.320  Sum_probs=156.1

Q ss_pred             eeEEEEEeCCCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeeccceeeEEEEeeecccEE
Q 028261           20 QSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYM   99 (211)
Q Consensus        20 ~~l~f~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~~~G~y~   99 (211)
                      -.+++.||||+++|||+.++.+..+..+|.|++|.+      +.+|++.+.+|.|.++.+.+.+.+|.+++.+.++|.|+
T Consensus        34 ~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G~G------Dl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~  107 (236)
T KOG3287|consen   34 YDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDGAG------DLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQ  107 (236)
T ss_pred             cceEEEecCCCceeeeeeccCCeEEEEEEEEEecCC------ccceeeEEeCCCccEEeecccccCceeEeeccCCcceE
Confidence            459999999999999999999999999999998831      57999999999999999988889999999999999999


Q ss_pred             EEEEecCCC-CceeEEEEEEEe-eCccc---cCchhhhhcC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261          100 ACFWAVDHS-PQTTVTIDFDWR-TGVQA---KDWSNVAKKG-----SVDVMELELKKLYDTVSSIHQEMFYLREREEEMQ  169 (211)
Q Consensus       100 ~Cf~n~~~~-~~~~v~v~~~~~-~g~~~---~~~~~~ak~e-----~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~  169 (211)
                      +||+|+.++ ..|.|-+++-+. .|+..   ..|++.++..     .++.+++.++.++..+..+...|..+|.||.|+|
T Consensus       108 ~CfDNsFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr  187 (236)
T KOG3287|consen  108 VCFDNSFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDR  187 (236)
T ss_pred             EEEcCccccccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            999999988 456565555332 24322   2233322221     3567788888888888888888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 028261          170 ELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKK  209 (211)
Q Consensus       170 ~~~es~~~rv~~~sii~~~vli~~~~~Qv~~lk~fF~~Kk  209 (211)
                      .+.+++..||.|||++|++++|++++.|+++||++|+.|+
T Consensus       188 ~L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~  227 (236)
T KOG3287|consen  188 NLQESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKS  227 (236)
T ss_pred             HHHhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCC
Confidence            9999999999999999999999999999999999999875

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=100.00  E-value=2.3e-40  Score=255.05  Aligned_cols=179  Identities=34%  Similarity=0.574  Sum_probs=5.6

Q ss_pred             eEEEEEeCCCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEE--cCCCCeEEeeeccc-eeeEEEEeeeccc
Q 028261           21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVT--SAYGNSYHYADRVD-SGQFAFTAAEAGD   97 (211)
Q Consensus        21 ~l~f~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~--~p~g~~i~~~~~~~-~g~~~f~~~~~G~   97 (211)
                      |++|+|+||+++||++++++|+.+.|+|.+.++++      +.++++.|+  +|+|+.++++.+.. +|+|+|+++++|+
T Consensus         1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~------~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~   74 (183)
T PF01105_consen    1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGGG------AYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGE   74 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeeccc------cceEEEEEEecccCCceeeeecccccCCcEEEEeccCCC
Confidence            68999999999999999999999999999997751      469999999  55668998875554 5799999999999


Q ss_pred             EEEEEEecCCCCcee-EEEEEEEeeCccccCchhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261           98 YMACFWAVDHSPQTT-VTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTN  176 (211)
Q Consensus        98 y~~Cf~n~~~~~~~~-v~v~~~~~~g~~~~~~~~~ak~e~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~  176 (211)
                      |++||+|..+. ... ..|+|+++.|.+..+.++.++++++++++..|+++...++.|+++|+|++.|+++|++.+++++
T Consensus        75 y~iCf~n~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~  153 (183)
T PF01105_consen   75 YQICFDNSSSS-FSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTN  153 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEcCCCC-ccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999876 223 6778888788765566678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028261          177 SRMAWFSGFSLFICIAVAGMQLWHLKTFFE  206 (211)
Q Consensus       177 ~rv~~~sii~~~vli~~~~~Qv~~lk~fF~  206 (211)
                      +|++||+++++++++++++||+++||+||+
T Consensus       154 ~~i~~~si~~~~vli~~~~~Qv~~lk~~f~  183 (183)
T PF01105_consen  154 SRIMWWSIIQIVVLILVSVWQVYYLKKFFK  183 (183)
T ss_dssp             ------------------------HHHHHH
T ss_pred             heEEhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999996

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=95.41  E-value=0.51  Score=32.12  Aligned_cols=68  Identities=16%  Similarity=0.149  Sum_probs=42.7

Q ss_pred             CCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeec---cceeeEEEEee-----ecccEEEEEEecCC
Q 028261           40 SNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR---VDSGQFAFTAA-----EAGDYMACFWAVDH  107 (211)
Q Consensus        40 ~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~---~~~g~~~f~~~-----~~G~y~~Cf~n~~~  107 (211)
                      .|+.+.+.--+.+.+.....+.+..+.+.|+||+|+.+.++..   ...|.+++..+     ..|.|++=......
T Consensus        13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~   88 (99)
T PF01835_consen   13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDD   88 (99)
T ss_dssp             TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTT
T ss_pred             CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccC
Confidence            3677766655544431112334579999999999999977655   23565554432     36999998887533

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=93.54  E-value=1.2  Score=30.07  Aligned_cols=45  Identities=24%  Similarity=0.371  Sum_probs=31.9

Q ss_pred             CceEEEEEEcCCCCeEEe-eeccceeeE--EEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYHY-ADRVDSGQF--AFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~-~~~~~~g~~--~f~~~~~G~y~~Cf~n~~  106 (211)
                      ...+.+.|.+|+|+.+.- -.+..+|.|  +|+++..|.|++...-..
T Consensus        31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g   78 (93)
T smart00557       31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG   78 (93)
T ss_pred             CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            468999999999965532 233345544  578888999998877654

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.09  E-value=0.91  Score=28.84  Aligned_cols=61  Identities=18%  Similarity=0.183  Sum_probs=41.8

Q ss_pred             ceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeec-----cceeeEEEEeeecccEEEEE
Q 028261           32 KCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR-----VDSGQFAFTAAEAGDYMACF  102 (211)
Q Consensus        32 ~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~-----~~~g~~~f~~~~~G~y~~Cf  102 (211)
                      ..|..++++|+.+.+.  +...        ..+.++.+++++|..+.+...     .......|+++.+|+|-+=.
T Consensus         3 D~y~f~v~ag~~l~i~--l~~~--------~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V   68 (70)
T PF04151_consen    3 DYYSFTVPAGGTLTID--LSGG--------SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV   68 (70)
T ss_dssp             EEEEEEESTTEEEEEE--ECET--------TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred             EEEEEEEcCCCEEEEE--EcCC--------CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence            4678888998887655  4332        236779999999877765222     12356778888999997643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....

>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod

Probab=90.27  E-value=2.1  Score=28.99  Aligned_cols=43  Identities=21%  Similarity=0.312  Sum_probs=28.6

Q ss_pred             ceEEEEEEcCCCC----eE-EeeeccceeeE--EEEeeecccEEEEEEec
Q 028261           63 HKLTVRVTSAYGN----SY-HYADRVDSGQF--AFTAAEAGDYMACFWAV  105 (211)
Q Consensus        63 ~~i~~~v~~p~g~----~i-~~~~~~~~g~~--~f~~~~~G~y~~Cf~n~  105 (211)
                      ..+.+.+.+|++.    .+ ..-.+..+|.|  +|+++..|.|+++..-.
T Consensus        42 ~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~   91 (101)
T PF00630_consen   42 DEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN   91 (101)
T ss_dssp             SEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred             ceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence            4788999999986    33 22233345544  47778888888887654

Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....

>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A

Probab=89.78  E-value=4.1  Score=26.72  Aligned_cols=54  Identities=17%  Similarity=0.236  Sum_probs=34.3

Q ss_pred             cEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeee--ccceeeEEEEee---------ecccEEEEEE
Q 028261           42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAA---------EAGDYMACFW  103 (211)
Q Consensus        42 ~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~--~~~~g~~~f~~~---------~~G~y~~Cf~  103 (211)
                      ....+.|.+..+        ...+.+.|+|.+|++|++..  ..+.|.+.|...         .+|.|.+=+.
T Consensus        12 ~~~~~~~~l~~~--------a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~   76 (81)
T PF13860_consen   12 TKGSIEYTLPED--------ADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVT   76 (81)
T ss_dssp             CEEEEEEEECSS--------CEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEE
T ss_pred             EEEEEEEeCCCc--------ccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEE
Confidence            467778877544        45899999999999998743  233455565553         2466665544

>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins

Probab=88.19  E-value=9.5  Score=29.35  Aligned_cols=48  Identities=13%  Similarity=0.226  Sum_probs=30.8

Q ss_pred             HhhcceeEEEEEeCCCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEc
Q 028261           15 LSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTS   71 (211)
Q Consensus        15 l~~~~~~l~f~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~   71 (211)
                      +....+.....+.   +.-.-..+.+|..+.+.|.+-..+.      +.-.++.+.|
T Consensus        14 ~~~~~~~a~llv~---K~il~~~~v~g~~v~V~~~iyN~G~------~~A~dV~l~D   61 (181)
T PF05753_consen   14 VAQEDSPARLLVS---KQILNKYLVEGEDVTVTYTIYNVGS------SAAYDVKLTD   61 (181)
T ss_pred             hccCCCCcEEEEE---EeeccccccCCcEEEEEEEEEECCC------CeEEEEEEEC
Confidence            3334444444443   3334556677999999999987542      4567788888

The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels

Probab=87.61  E-value=11  Score=28.93  Aligned_cols=45  Identities=18%  Similarity=0.225  Sum_probs=30.3

Q ss_pred             eEEEEEEcCCCCeEEe-eeccceeeEEEEe---eecccEEEEEEecCCC
Q 028261           64 KLTVRVTSAYGNSYHY-ADRVDSGQFAFTA---AEAGDYMACFWAVDHS  108 (211)
Q Consensus        64 ~i~~~v~~p~g~~i~~-~~~~~~g~~~f~~---~~~G~y~~Cf~n~~~~  108 (211)
                      ...+.+++|+|+.+.. ..+.......+..   .+.|.+++.+.|....
T Consensus        42 ~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~   90 (179)
T PF09315_consen   42 PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSS   90 (179)
T ss_pred             CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCC
Confidence            4567899999998866 2333334444444   4689999999877654

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=87.26  E-value=5.1  Score=24.72  Aligned_cols=45  Identities=13%  Similarity=0.174  Sum_probs=29.8

Q ss_pred             CceEEEEEEcCCCCeEEeeeccceeeEEEEeeecccEEEEEEecCCC
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHS  108 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~  108 (211)
                      +......+.+.+++-+.......  .+.|+...+|.|+|-.......
T Consensus         7 ~~~Y~Y~l~g~d~~W~~~~~~~~--~~~~~~L~~G~Y~l~V~a~~~~   51 (66)
T PF07495_consen    7 NIRYRYRLEGFDDEWITLGSYSN--SISYTNLPPGKYTLEVRAKDNN   51 (66)
T ss_dssp             TEEEEEEEETTESSEEEESSTS---EEEEES--SEEEEEEEEEEETT
T ss_pred             ceEEEEEEECCCCeEEECCCCcE--EEEEEeCCCEEEEEEEEEECCC
Confidence            45677777777766444433221  8899999999999999887644

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PRK12813 flgD flagellar basal body rod modification protein; Reviewed

Probab=84.46  E-value=5.1  Score=31.91  Aligned_cols=58  Identities=16%  Similarity=0.026  Sum_probs=41.1

Q ss_pred             CcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeeccceeeEEEEee---------ecccEEEEEEecCC
Q 028261           41 NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAA---------EAGDYMACFWAVDH  107 (211)
Q Consensus        41 ~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~---------~~G~y~~Cf~n~~~  107 (211)
                      +..+.+.|....+        ...+.+.|+|.+|++|++... +.|.+.|...         .+|.|+|-......
T Consensus       110 g~~~~~~~~l~~~--------a~~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~~~  176 (223)
T PRK12813        110 GTPVTISPNPAAD--------ADKAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESYSG  176 (223)
T ss_pred             CceeEEEEeccCC--------CceEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEEeC
Confidence            4466777776543        458999999999999987643 4555555553         36999999877643

>PRK06655 flgD flagellar basal body rod modification protein; Reviewed

Probab=84.41  E-value=19  Score=28.71  Aligned_cols=56  Identities=21%  Similarity=0.210  Sum_probs=40.2

Q ss_pred             cEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeec--cceeeEEEEee---------ecccEEEEEEec
Q 028261           42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR--VDSGQFAFTAA---------EAGDYMACFWAV  105 (211)
Q Consensus        42 ~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~--~~~g~~~f~~~---------~~G~y~~Cf~n~  105 (211)
                      ....+.|....+        ...+.+.|+|.+|++|++-..  .+.|.+.|...         .+|.|++=+...
T Consensus       113 ~~~~~~~~l~~~--------a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~  179 (225)
T PRK06655        113 GTTPFGVELPSA--------ADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS  179 (225)
T ss_pred             CceEEEEEcCCC--------CcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence            355666665433        458999999999999986432  45788888653         379999998765

>PRK12812 flgD flagellar basal body rod modification protein; Reviewed

Probab=83.14  E-value=15  Score=30.03  Aligned_cols=57  Identities=14%  Similarity=0.138  Sum_probs=40.8

Q ss_pred             cEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeee--ccceeeEEEEeee---------cccEEEEEEecC
Q 028261           42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAAE---------AGDYMACFWAVD  106 (211)
Q Consensus        42 ~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~--~~~~g~~~f~~~~---------~G~y~~Cf~n~~  106 (211)
                      ..+.+.|.+...        ...+.+.|+|.+|++|++..  ..+.|.+.|....         +|.|++-.....
T Consensus       128 ~~~~~~~~l~~~--------a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~~  195 (259)
T PRK12812        128 ELIALKLYFPED--------SDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYNN  195 (259)
T ss_pred             ceeEEEEecCCc--------CceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEEc
Confidence            356666665332        45899999999999998753  3446777887743         699999987544

>TIGR03503 conserved hypothetical protein TIGR03503

Probab=82.61  E-value=31  Score=29.75  Aligned_cols=47  Identities=11%  Similarity=0.053  Sum_probs=29.0

Q ss_pred             CceEEEEEEcCCCCeEEeeeccceeeEEEEe---eecccEEEEEEecCCC
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSGQFAFTA---AEAGDYMACFWAVDHS  108 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~---~~~G~y~~Cf~n~~~~  108 (211)
                      +-.+++.+++|+|..........++...+..   .+.|.|++-.+.-.+.
T Consensus       241 s~~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~~~~Tt  290 (374)
T TIGR03503       241 SLVIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKGTVFGTT  290 (374)
T ss_pred             cEEEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEEEEEEec
Confidence            4578888899999843333333344444433   3679998876655443

This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=82.55  E-value=7.8  Score=26.81  Aligned_cols=57  Identities=11%  Similarity=0.144  Sum_probs=37.1

Q ss_pred             CcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeeccc--eeeEEEEe--eecccEEEEEEecCC
Q 028261           41 NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVD--SGQFAFTA--AEAGDYMACFWAVDH  107 (211)
Q Consensus        41 ~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~--~g~~~f~~--~~~G~y~~Cf~n~~~  107 (211)
                      |..+.+.|..  +        ..++.+.|+|..|+++|+..-..  .....+..  ...|+|.+=+.+...
T Consensus        36 ~~~l~I~F~~--~--------~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g   96 (106)
T PF11589_consen   36 GNNLSIEFES--P--------IGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG   96 (106)
T ss_dssp             TTEEEEEESS------------SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred             CCEEEEEEcC--C--------CCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence            5666666642  2        34899999999999999874333  23455555  468999999998875

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

>PRK12633 flgD flagellar basal body rod modification protein; Provisional

Probab=80.02  E-value=20  Score=28.65  Aligned_cols=45  Identities=22%  Similarity=0.315  Sum_probs=34.6

Q ss_pred             CceEEEEEEcCCCCeEEeee--ccceeeEEEEee---------ecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAA---------EAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~--~~~~g~~~f~~~---------~~G~y~~Cf~n~~  106 (211)
                      ...+.+.|+|.+|++|++..  ..+.|.+.|...         .+|.|+|-+....
T Consensus       128 a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a~~  183 (230)
T PRK12633        128 ATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSASD  183 (230)
T ss_pred             CcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEEEe
Confidence            46899999999999998753  345778888763         3689999997644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	95.51
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	92.63
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	92.54
3rgh_A	100	Filamin-A; cell adhesion, cytoskeleton-complex, di	91.45
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	91.31
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	89.82
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	89.41
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	89.4
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.78
4g9s_B	111	Inhibitor of G-type lysozyme, goose-type lysozyme;	88.51
2e9j_A	119	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.38
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.36
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	88.2
2nqc_A	138	Filamin-C; immunoglobulin, metal binding, immune s	88.02
1v05_A	96	Filamin C; actin-binding protein, immunoglobulin;	87.93
2eea_A	115	Filamin-B; beta-sandwich, immunoglobulin-like fold	87.81
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	87.7
3osv_A	138	Flagellar basal-BODY ROD modification protein FLG;	87.56
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	87.52
2dia_A	113	Filamin-B; beta-sandwich, immunoglobulin-like fold	86.72
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	86.7
2dmc_A	116	Filamin-B; beta-sandwich, immunoglobulin-like fold	86.6
3c12_A	138	FLGD, flagellar protein; HOOK capping, IG-like dom	85.67
2k9u_A	119	Gamma filamin; cytoskeletal complex, alternative s	85.0
2dic_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	82.74
2w0p_A	94	Filamin-A; alternative splicing, cytoskeleton/comp	82.52
2bp3_A	97	Filamin A; structural protein, cytoskeleton/comple	82.36
2ds4_A	113	Tripartite motif protein 45; beta-sandwich, immuno	82.22
2eec_A	125	Filamin-B; beta-sandwich, immunoglobulin-like fold	80.09

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=95.51  E-value=0.21  Score=41.96  Aligned_cols=87  Identities=10%  Similarity=0.095  Sum_probs=55.0

Q ss_pred             EEEEeCCCcceEEEEcC-CCcEEEEEEEEecCCCCCCCCCCceEEEEEEc-----CC---C--CeEEeeeccc----eee
Q 028261           23 RFEIQSAHTKCIAEDIK-SNSMTVGKYNVVNPNDGHPLPESHKLTVRVTS-----AY---G--NSYHYADRVD----SGQ   87 (211)
Q Consensus        23 ~f~l~~g~~~Cf~~~v~-~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~-----p~---g--~~i~~~~~~~----~g~   87 (211)
                      ++.|.+|+...+-..+. .|..+.=.|.+.+          .+|.+.|+=     ++   |  ..+....+..    -..
T Consensus       281 ~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~----------~DI~F~v~~~~~~~~~~~~~~~~~v~p~~r~~~~~~~~~  350 (403)
T 1olm_A          281 SVQISRGSSHQVEYEILFPGCVLRWQFMSDG----------ADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPED  350 (403)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEESS----------SCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEE
T ss_pred             EEEEcCCCEEEEEEEEcCCCCEEEEEEEecC----------CcEEEEEEEecccccccCCCcceEEeeeeeecCcccccc
Confidence            37889999999888887 5788877777732          366666651     11   1  1232221111    113


Q ss_pred             EEEEeeecccEEEEEEecCCC-CceeEEEEEEE
Q 028261           88 FAFTAAEAGDYMACFWAVDHS-PQTTVTIDFDW  119 (211)
Q Consensus        88 ~~f~~~~~G~y~~Cf~n~~~~-~~~~v~v~~~~  119 (211)
                      =+|.+.++|.|.++|+|+.|. ..+.+...+.+
T Consensus       351 G~~~~~~~G~y~l~fdNs~S~~~~k~l~y~v~v  383 (403)
T 1olm_A          351 GTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEV  383 (403)
T ss_dssp             EEEECCSCEEEEEEEECTTCCCCSEEEEEEEEE
T ss_pred             CEEEcCCCeEEEEEEeccccceeceEEEEEEEE
Confidence            346789999999999999875 34555444444

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=92.63  E-value=1.2  Score=29.32  Aligned_cols=55  Identities=15%  Similarity=0.123  Sum_probs=37.3

Q ss_pred             CceEEEEEEcCCCCeEEe-eecccee--eEEEEeeecccEEEEEEecCCC-CceeEEEE
Q 028261           62 SHKLTVRVTSAYGNSYHY-ADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~-~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~v~v~  116 (211)
                      ..++.+.|.+|+|..+.- -.+..+|  ...|++++.|.|.++..-.... ......+.
T Consensus        21 ~~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~~I~GSPF~v~   79 (93)
T 2d7n_A           21 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFY   79 (93)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEEE
T ss_pred             CCCEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECCEeCCCCCeEEE
Confidence            458999999999986532 1223455  4557888999999999876654 33444444

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=92.54  E-value=0.27  Score=33.81  Aligned_cols=70  Identities=10%  Similarity=0.056  Sum_probs=49.8

Q ss_pred             EEeCCCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCe---EEeeeccceeeEEEEeeecccEEEE
Q 028261           25 EIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNS---YHYADRVDSGQFAFTAAEAGDYMAC  101 (211)
Q Consensus        25 ~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~---i~~~~~~~~g~~~f~~~~~G~y~~C  101 (211)
                      .|.+++...+...+.+|+.+.+..   ++        +..+.+.|.+|+|+.   ++..+....+.|+-+.+.+|.|++=
T Consensus        23 ~I~g~~~~~Y~~~a~aGQ~l~V~l---s~--------~~~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~   91 (114)
T 4dzg_A           23 SFTGYDTIHYTLVAXAGQTMTVXI---GG--------SSNANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQ   91 (114)
T ss_dssp             CCBTTCCEEEECCC-CCCEEEC-C---EE--------STTCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEE
T ss_pred             EecCCCceEEEEEecCCCEEEEEe---CC--------CCcEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEE
Confidence            577788888888899999987775   22        235667889999873   3443333346888899999999999


Q ss_pred             EEec
Q 028261          102 FWAV  105 (211)
Q Consensus       102 f~n~  105 (211)
                      ....
T Consensus        92 V~~~   95 (114)
T 4dzg_A           92 VYQM   95 (114)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            8876

>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0

Probab=91.45  E-value=1.7  Score=28.80  Aligned_cols=45  Identities=18%  Similarity=0.217  Sum_probs=29.7

Q ss_pred             CceEEEEEEcCCCCeEEe-eeccceee--EEEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYHY-ADRVDSGQ--FAFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~-~~~~~~g~--~~f~~~~~G~y~~Cf~n~~  106 (211)
                      ...+.+.|.+|+|..+.- -.+..+|.  .+|+++..|.|.+...-..
T Consensus        38 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~~~g   85 (100)
T 3rgh_A           38 SAELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKYGG   85 (100)
T ss_dssp             SCCEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEEETT
T ss_pred             CceEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            457899999999865422 22334554  4567788898888866543

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.31  E-value=1.1  Score=29.74  Aligned_cols=55  Identities=13%  Similarity=0.128  Sum_probs=36.8

Q ss_pred             CceEEEEEEcCCCCeEEe-eecccee--eEEEEeeecccEEEEEEecCCC-CceeEEEE
Q 028261           62 SHKLTVRVTSAYGNSYHY-ADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~-~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~v~v~  116 (211)
                      ..++.+.|.+|+|+.+.- -.+..+|  ...|++++.|.|+++..-.... ++....+.
T Consensus        29 ~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~~I~GSPF~v~   87 (95)
T 2ee9_A           29 KGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGSHIPESPLQFY   87 (95)
T ss_dssp             TTSEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESSCBCTTCSEEEE
T ss_pred             CCCEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECCEECCCCCeEEE
Confidence            458999999999976532 1223355  4457788999999998876544 33444443

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=89.82  E-value=2.5  Score=28.74  Aligned_cols=54  Identities=19%  Similarity=0.166  Sum_probs=35.4

Q ss_pred             ceEEEEEEcCCCCeEEee-ecccee--eEEEEeeecccEEEEEEecCCC-CceeEEEE
Q 028261           63 HKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (211)
Q Consensus        63 ~~i~~~v~~p~g~~i~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~v~v~  116 (211)
                      ..+.+.|.+|+|..+--. .+..+|  ..+|++++.|.|.+...-.... ......+.
T Consensus        41 g~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g~~I~GSPF~v~   98 (112)
T 2d7p_A           41 GVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIR   98 (112)
T ss_dssp             SCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             CCEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECCeEcCCCCEEEE
Confidence            488999999999754321 222344  4557888999999998866544 33344443

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=89.41  E-value=3.2  Score=27.29  Aligned_cols=64  Identities=14%  Similarity=0.081  Sum_probs=39.9

Q ss_pred             CCcEEEEEEEEecCCCCCCCCCC-ceEEEEEEcCCCCeEEeeecc--ceeeEE--EEee---ecccEEEEEEecC
Q 028261           40 SNSMTVGKYNVVNPNDGHPLPES-HKLTVRVTSAYGNSYHYADRV--DSGQFA--FTAA---EAGDYMACFWAVD  106 (211)
Q Consensus        40 ~~~~i~~~y~v~~~~~~~~~~~~-~~i~~~v~~p~g~~i~~~~~~--~~g~~~--f~~~---~~G~y~~Cf~n~~  106 (211)
                      .|+.+.+..-+.+.+.   .|.+ ..+.+.+.||+|+.+.++...  ..|.++  |..+   ..|.|++......
T Consensus        15 PGetV~~~~~~~~~~~---~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~   86 (102)
T 2p9r_A           15 PGQTVKFRVVSMDENF---HPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS   86 (102)
T ss_dssp             TTCEEEEEEEEECGGG---CBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred             CCCEEEEEEEEECCCC---cCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC
Confidence            3677766655554432   1222 347899999999998775322  244443  4442   4799999988643

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=89.40  E-value=3.2  Score=28.13  Aligned_cols=55  Identities=16%  Similarity=0.253  Sum_probs=35.7

Q ss_pred             CceEEEEEEcCCCCeEEe-eeccceeeE--EEEeeecccEEEEEEecCCC-CceeEEEE
Q 028261           62 SHKLTVRVTSAYGNSYHY-ADRVDSGQF--AFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~-~~~~~~g~~--~f~~~~~G~y~~Cf~n~~~~-~~~~v~v~  116 (211)
                      ...+.+.|.+|+|..+.. -.+..+|.|  +|++++.|.|.+...-.... ......+.
T Consensus        43 ~~~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~I~gSPF~v~  101 (115)
T 2d7m_A           43 EGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIH  101 (115)
T ss_dssp             SSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             CCEEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEECCEECCCCCEEEE
Confidence            457899999999865422 222345544  47778999999998876544 23334443

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=88.78  E-value=3.9  Score=27.37  Aligned_cols=47  Identities=23%  Similarity=0.273  Sum_probs=32.5

Q ss_pred             CceEEEEEEcCCCCeEEe-eeccceeeEE--EEeeecccEEEEEEecCCC
Q 028261           62 SHKLTVRVTSAYGNSYHY-ADRVDSGQFA--FTAAEAGDYMACFWAVDHS  108 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~-~~~~~~g~~~--f~~~~~G~y~~Cf~n~~~~  108 (211)
                      ...+.+.|.+|+|..+.- -.+..+|.|.  |++++.|.|.+...-....
T Consensus        42 ~~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~   91 (108)
T 2dj4_A           42 LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADEE   91 (108)
T ss_dssp             SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESSSB
T ss_pred             CceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEECCEE
Confidence            468999999999965422 1223455444  7778899999998866543

>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A

Probab=88.51  E-value=2.1  Score=29.02  Aligned_cols=72  Identities=8%  Similarity=-0.089  Sum_probs=50.6

Q ss_pred             EEEEEeCCCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEee---eccceeeEEEEeeecccE
Q 028261           22 LRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA---DRVDSGQFAFTAAEAGDY   98 (211)
Q Consensus        22 l~f~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~---~~~~~g~~~f~~~~~G~y   98 (211)
                      +.=.|.+++...+...+.+|+.+++..  ..+          +..+.+..|.+......   ......++..+.+.+|+|
T Consensus        18 v~G~I~g~~~~~Y~~~a~aGQ~l~v~l--~s~----------~~~~~i~~pg~~~~~~~~~~~~~~~~~~~~~LP~sG~Y   85 (111)
T 4g9s_B           18 YSGEIKGYDYDTYTFYAKKGQKVHVSI--SNE----------GADTYLFGPGIDDSVDLSRYSPELDSHGQYSLPASGKY   85 (111)
T ss_dssp             EEEEEETTCCEEEEEEECTTCEEEEEE--SCT----------TCEEEEECTTCSSCEECSTTCTTCCTTSCEECSSSEEE
T ss_pred             EEEEEeCCCceEEEEEecCCCEEEEEE--ecC----------CccEEEECCCCccccccccccccCCceEEEEecCCccE
Confidence            444788899999999999999998764  222          23566888876543221   122245678889999999


Q ss_pred             EEEEEec
Q 028261           99 MACFWAV  105 (211)
Q Consensus        99 ~~Cf~n~  105 (211)
                      ++=....
T Consensus        86 ~I~V~~~   92 (111)
T 4g9s_B           86 ELRVLQT   92 (111)
T ss_dssp             EEEEECC
T ss_pred             EEEEEec
Confidence            9998743

>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.38  E-value=1.6  Score=29.92  Aligned_cols=47  Identities=17%  Similarity=0.277  Sum_probs=31.7

Q ss_pred             CceEEEEEEcCCCCeEEe-eeccceeeE--EEEeeecccEEEEEEecCCC
Q 028261           62 SHKLTVRVTSAYGNSYHY-ADRVDSGQF--AFTAAEAGDYMACFWAVDHS  108 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~-~~~~~~g~~--~f~~~~~G~y~~Cf~n~~~~  108 (211)
                      ...+.+.|.+|+|..+.- -.+..+|.|  +|+++..|.|.+...-....
T Consensus        53 ~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~  102 (119)
T 2e9j_A           53 EGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGGDD  102 (119)
T ss_dssp             CCCEECCEECTTCCCCCEEEEECCSSEEEEEECCCSCSEEEECCEESSCB
T ss_pred             CCeEEEEEECCCCCEEEEEEEECCCCEEEEEEEeCCCEEEEEEEEECCEE
Confidence            457899999999864422 122345544  47778899999988765543

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.36  E-value=3.3  Score=27.60  Aligned_cols=44  Identities=20%  Similarity=0.277  Sum_probs=32.2

Q ss_pred             CceEEEEEEcCCCCeEEeeecccee--eEEEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  106 (211)
                      ...+.+.|.+|++..+ +-.+..+|  ..+|+++.+|.|.++..-..
T Consensus        41 ~~~l~v~v~~p~~~~v-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g   86 (105)
T 2ee6_A           41 AGGLSIAVEGPSKAEI-TFDDHKNGSCGVSYIAQEPGNYEVSIKFND   86 (105)
T ss_dssp             CCCEEEEEESSSCEEE-EECCCCSSCCCEEEEESSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEE-EEEECCCCEEEEEEEECCCceEEEEEEECC
Confidence            4578899999998655 32333455  56688889999999988654

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=88.20  E-value=3.6  Score=26.35  Aligned_cols=45  Identities=16%  Similarity=0.156  Sum_probs=29.1

Q ss_pred             CceEEEEEEcCCCCeEE-eeecccee--eEEEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYH-YADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~-~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  106 (211)
                      +..+.+.|.+|+|..+. +-.+..+|  ..+|++++.|.|.+...-..
T Consensus        29 ~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   76 (89)
T 3cnk_A           29 NNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGH   76 (89)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEECC
Confidence            45788899999985321 11222344  44477788899988877554

>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A

Probab=88.02  E-value=5.4  Score=28.15  Aligned_cols=44  Identities=16%  Similarity=0.259  Sum_probs=31.0

Q ss_pred             CceEEEEEEcCCCCeEEeeecccee-eEEEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSG-QFAFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g-~~~f~~~~~G~y~~Cf~n~~  106 (211)
                      ...+.+.|.+|++..+.-.+ ..+| ..+|+++++|.|.+...-..
T Consensus        75 ~g~l~v~I~gPs~~~~~~~d-~~dGy~V~YtP~~~G~y~I~Vk~~g  119 (138)
T 2nqc_A           75 SGALSVTIDGPSKVQLDCRE-CPEGHVVTYTPMAPGNYLIAIKYGG  119 (138)
T ss_dssp             SCCEEEEEESSSCCEEEEEE-ETTEEEEEEECCSCEEEEEEEEESS
T ss_pred             CCcEEEEEECCCCCeeeEEE-CCCcEEEEEEcCCCEEEEEEEEECC
Confidence            45789999999987553322 2345 44577789999998877655

>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A

Probab=87.93  E-value=3.8  Score=26.66  Aligned_cols=45  Identities=20%  Similarity=0.279  Sum_probs=29.1

Q ss_pred             CceEEEEEEcCCCCeEE-eeeccceee--EEEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYH-YADRVDSGQ--FAFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~-~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~  106 (211)
                      ...+.+.|.+|+|..+. +-.+..+|.  .+|++++.|.|.+...-..
T Consensus        36 ~~~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   83 (96)
T 1v05_A           36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEEEEECC
Confidence            45788899999985321 112233454  4467788899988877554

>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.81  E-value=4.8  Score=27.25  Aligned_cols=46  Identities=13%  Similarity=0.147  Sum_probs=32.2

Q ss_pred             CceEEEEEEcCCCCeEEeeecccee--eEEEEeeecccEEEEEEecCCC
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS  108 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~  108 (211)
                      ...+.+.|.+|++..+. -.+..+|  ..+|+++.+|.|.+...-....
T Consensus        51 ~~~l~v~v~~p~~~~~~-v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~   98 (115)
T 2eea_A           51 EGGLDLAIEGPSKAEIS-CIDNKDGTCTVTYLPTLPGDYSILVKYNDKH   98 (115)
T ss_dssp             SSCEEEEEESSSCCEEC-CBCCSSSEEEEEEECSSCSCEEEEEEESSSB
T ss_pred             CCceEEEEECCCCceEE-EEECCCCEEEEEEEeCCCeeEEEEEEECCEE
Confidence            45789999999985442 2333456  4557888999999998865433

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=87.70  E-value=5.2  Score=27.58  Aligned_cols=55  Identities=22%  Similarity=0.281  Sum_probs=35.9

Q ss_pred             CceEEEEEEcCCCCeEEe-eeccceee--EEEEeeecccEEEEEEecCCC-CceeEEEE
Q 028261           62 SHKLTVRVTSAYGNSYHY-ADRVDSGQ--FAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~-~~~~~~g~--~~f~~~~~G~y~~Cf~n~~~~-~~~~v~v~  116 (211)
                      ...+.+.|.+|+|..+.. -.+..+|.  ..|++++.|.|+++..-.... ......+.
T Consensus        42 ~~~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~  100 (124)
T 2dmb_A           42 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTVM  100 (124)
T ss_dssp             SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             CCcEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECCEECCCCCeEEE
Confidence            458899999999865432 12234554  457888999999998876544 33344443

>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}

Probab=87.56  E-value=3.5  Score=29.02  Aligned_cols=57  Identities=16%  Similarity=0.110  Sum_probs=40.9

Q ss_pred             cEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeee--ccceeeEEEEee---------ecccEEEEEEecC
Q 028261           42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAA---------EAGDYMACFWAVD  106 (211)
Q Consensus        42 ~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~--~~~~g~~~f~~~---------~~G~y~~Cf~n~~  106 (211)
                      ....+.|.+..+        ...+.+.|+|.+|+++++..  ..+.|.+.|...         .+|.|++-.....
T Consensus        24 ~~~~~~~~l~~~--------a~~v~v~I~d~~G~~V~t~~~g~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~v~a~~   91 (138)
T 3osv_A           24 DTFKASLNLPVS--------SSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSI   91 (138)
T ss_dssp             SCEEEEEEESBC--------EEEEEEEEECTTSCEEEEEEEEEECSEEEEEEECSBCTTSCBCCSEEEEEEEEEEE
T ss_pred             CeEEEEEECCCC--------CcEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCccEEEEEEEEc
Confidence            346677776433        35899999999999998743  345677777663         2689999987664

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=87.52  E-value=1.3  Score=29.72  Aligned_cols=54  Identities=15%  Similarity=0.129  Sum_probs=36.3

Q ss_pred             CceEEEEEEcCCCCeEEee-eccceeeE--EEEeeecccEEEEEEecCCC-CceeEEE
Q 028261           62 SHKLTVRVTSAYGNSYHYA-DRVDSGQF--AFTAAEAGDYMACFWAVDHS-PQTTVTI  115 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~-~~~~~g~~--~f~~~~~G~y~~Cf~n~~~~-~~~~v~v  115 (211)
                      ..++.+.|.+|+|..+--. .+..+|.|  +|++++.|.|.+...-.... +.....+
T Consensus        30 ~~~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g~~I~GSPF~v   87 (102)
T 2dlg_A           30 SSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQHVTGSPFQF   87 (102)
T ss_dssp             GGGCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSSSBCSSCSEEE
T ss_pred             CCCEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECCEeCCCCCeEE
Confidence            4689999999999765332 22345544  47888999999998866544 3334433

>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=86.72  E-value=3.3  Score=27.93  Aligned_cols=46  Identities=15%  Similarity=0.171  Sum_probs=31.5

Q ss_pred             CceEEEEEEcCCCCeEEe-eeccceee--EEEEeeecccEEEEEEecCC
Q 028261           62 SHKLTVRVTSAYGNSYHY-ADRVDSGQ--FAFTAAEAGDYMACFWAVDH  107 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~-~~~~~~g~--~~f~~~~~G~y~~Cf~n~~~  107 (211)
                      ...+.+.|.+|+|..+.. -.+..+|.  .+|+++..|.|++...-...
T Consensus        41 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~   89 (113)
T 2dia_A           41 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGE   89 (113)
T ss_dssp             SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETTE
T ss_pred             CccEEEEEECCCCCEeeEEEEECCCCEEEEEEEeCCCccEEEEEEECCE
Confidence            457889999998854422 23334564  45788899999999886543

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=86.70  E-value=2.9  Score=34.41  Aligned_cols=80  Identities=14%  Similarity=0.192  Sum_probs=48.7

Q ss_pred             eeEEEEEeCCCcceEEEEcCC-----CcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEE---eeeccceeeE--E
Q 028261           20 QSLRFEIQSAHTKCIAEDIKS-----NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH---YADRVDSGQF--A   89 (211)
Q Consensus        20 ~~l~f~l~~g~~~Cf~~~v~~-----~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~---~~~~~~~g~~--~   89 (211)
                      ..+.-...|.+-+|+.--+..     |...  .|.|...++|     ...+.+.|.+|+|..+-   +..+..+|.|  +
T Consensus       246 ~~l~~k~~pskv~a~GpGle~~g~~vg~p~--~F~Vdt~~AG-----~g~l~v~V~~P~G~~~~~~v~~~~~~~gty~v~  318 (347)
T 4b7l_A          246 APLKPKLNPKKARAYGRGIEPTGNMVKQPA--KFTVDTISAG-----QGDVMVFVEDPEGNKEEAQVTPDSDKNKTYSVE  318 (347)
T ss_dssp             CCCCCSCCGGGCEEESGGGSSSCCCTTSCE--EEEEECTTTC-----SCCEEEEEECTTSCEEECEEEESSTTCSEEEEE
T ss_pred             ccccccccccceeEEeccccccCceeCCEE--EEEEEeCCCC-----CCceEEEEECCCCCeecCEEEEEcCCCCEEEEE
Confidence            344445555666666655542     2333  5555443322     45899999999997553   2233345644  5


Q ss_pred             EEeeecccEEEEEEecC
Q 028261           90 FTAAEAGDYMACFWAVD  106 (211)
Q Consensus        90 f~~~~~G~y~~Cf~n~~  106 (211)
                      |++++.|.|.+-..-..
T Consensus       319 y~P~~~G~~~I~V~~~g  335 (347)
T 4b7l_A          319 YLPKVTGLHKVTVLFAG  335 (347)
T ss_dssp             ECCCSSSEEEEEEEETT
T ss_pred             EEECCCEeEEEEEEECC
Confidence            88889999998876554

>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=86.60  E-value=1  Score=30.89  Aligned_cols=55  Identities=16%  Similarity=0.256  Sum_probs=36.0

Q ss_pred             CceEEEEEEcCCCCeEEe-eecccee--eEEEEeeecccEEEEEEecCCC-CceeEEEE
Q 028261           62 SHKLTVRVTSAYGNSYHY-ADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~-~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~v~v~  116 (211)
                      ...+.+.|.+|+|..+-. -.+..+|  ..+|++++.|+|.+...-.... +.....+.
T Consensus        44 ~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~e~G~h~v~V~~~g~~I~GSPF~v~  102 (116)
T 2dmc_A           44 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGNHVANSPVSIM  102 (116)
T ss_dssp             STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSSBCTTCSEEEE
T ss_pred             CCCEEEEEECCCCCEEeeEEEeCCCCeEEEEEEeCCCeeEEEEEEECCEECCCCCeEEE
Confidence            457899999999975422 1222344  4568889999999998866544 33444443

>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}

Probab=85.67  E-value=7.3  Score=27.29  Aligned_cols=44  Identities=18%  Similarity=0.203  Sum_probs=34.3

Q ss_pred             CceEEEEEEcCCCCeEEeee--ccceeeEEEEee---------ecccEEEEEEec
Q 028261           62 SHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAA---------EAGDYMACFWAV  105 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~--~~~~g~~~f~~~---------~~G~y~~Cf~n~  105 (211)
                      ...+.+.|+|.+|+++++..  ..+.|.+.|...         .+|.|++.+...
T Consensus        38 a~~v~v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg~d~~G~~~~~G~Y~~~v~a~   92 (138)
T 3c12_A           38 AGFVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYGITATQT   92 (138)
T ss_dssp             SEEEEEEEECSSCCEEEEEEEEESSSEEEEEEECSBCTTSCBCCSEEEEEEEEEE
T ss_pred             CCEEEEEEEeCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCceEEEEEEEE
Confidence            46899999999999998753  345777777763         268999999876

>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}

Probab=85.00  E-value=7.1  Score=26.55  Aligned_cols=53  Identities=17%  Similarity=0.358  Sum_probs=35.4

Q ss_pred             CceEEEEEEcCCCCeEEeeecccee--eEEEEeeecccEEEEEEecCCC-CceeEEE
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTI  115 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~v~v  115 (211)
                      ...+.+.|.+|++-.+.- .+..+|  ..+|+++.+|.|.+...-...+ ......+
T Consensus        48 ~~~l~v~v~~p~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v  103 (119)
T 2k9u_A           48 AGGLSIAVEGPSKAEIAF-EDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVV  103 (119)
T ss_dssp             SEEEEEEEESSSCCEEEE-ECCSSSEEEEEEECCSSEEEEEEEEETSCBCSSCSEEE
T ss_pred             CCcEEEEEeCCCCCeEEE-EECCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEE
Confidence            468899999998843322 334456  4557888999999998866543 3334444

>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=82.74  E-value=8.3  Score=25.56  Aligned_cols=44  Identities=16%  Similarity=0.157  Sum_probs=30.4

Q ss_pred             CceEEEEEEcCCCCeEEeeecccee--eEEEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  106 (211)
                      ...+.+.|.+|.+..+.-.+ ..+|  ..+|+++.+|.|.+...-..
T Consensus        41 ~g~l~v~v~gp~~~~~~v~d-~~dGty~v~Y~p~~~G~y~I~V~~~g   86 (105)
T 2dic_A           41 IGGLGITVEGPSESKINCRD-NKDGSCSAEYIPFAPGDYDVNITYGG   86 (105)
T ss_dssp             SSCEEEEEESSSCCCCEEEE-CSSSCEEEEECCSSCEEEEEEEEETT
T ss_pred             CCceEEEEECCCCCeEEEEE-CCCCeEEEEEEeCCCeEEEEEEEECC
Confidence            34688888999875443222 3455  45577788999999988654

>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A

Probab=82.52  E-value=7.7  Score=25.07  Aligned_cols=44  Identities=18%  Similarity=0.294  Sum_probs=30.1

Q ss_pred             CceEEEEEEcCCCCeEEeeecccee--eEEEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  106 (211)
                      ...+.+.|.+|++..+.-. +..+|  ..+|+++.+|.|.+...-..
T Consensus        33 ~~~~~v~v~gp~~~~~~v~-d~~dGty~v~Y~p~~~G~y~I~V~~~g   78 (94)
T 2w0p_A           33 AGGLAIAVEGPSKAEISFE-DRKDGSCGVAYVVQEPGDYEVSVKFNE   78 (94)
T ss_dssp             SCCEEEEEEESSCCEEEEE-ECTTSCEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCeEEEE-ECCCCEEEEEEEECCCceEEEEEEECC
Confidence            3467888899988554322 23455  44577888999999887654

>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A

Probab=82.36  E-value=8  Score=25.13  Aligned_cols=44  Identities=11%  Similarity=0.177  Sum_probs=30.7

Q ss_pred             CceEEEEEEcCCCCeEEeeecccee--eEEEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  106 (211)
                      ...+.+.|.+|++..+.-. +..+|  ..+|+++++|.|.+...-..
T Consensus        36 ~~~l~v~v~~p~~~~~~v~-d~~dGty~v~Y~p~~~G~y~i~V~~~g   81 (97)
T 2bp3_A           36 EGGLSLAIEGPSKAEISCT-DNQDGTCSVSYLPVLPGDYSILVKYNE   81 (97)
T ss_dssp             SEEEEEEEEESSCCEEEEE-ECSSSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEEEE-ECCCCEEEEEEEeCCCCcEEEEEEECC
Confidence            4578899999988554322 23455  45577788999999887554

>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.22  E-value=8.8  Score=25.49  Aligned_cols=47  Identities=15%  Similarity=0.258  Sum_probs=30.7

Q ss_pred             CceEEEEEEcCCC--CeE-EeeeccceeeEE--EEeeecccEEEEEEecCCC
Q 028261           62 SHKLTVRVTSAYG--NSY-HYADRVDSGQFA--FTAAEAGDYMACFWAVDHS  108 (211)
Q Consensus        62 ~~~i~~~v~~p~g--~~i-~~~~~~~~g~~~--f~~~~~G~y~~Cf~n~~~~  108 (211)
                      +..+.+.|.+|++  ..+ .+-.+..+|.|.  |++.+.|.|+++..-...+
T Consensus        48 g~~~~v~i~~p~~~~~~~~~~v~D~~dGty~v~y~p~~~G~y~i~V~~~g~~   99 (113)
T 2ds4_A           48 GDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQH   99 (113)
T ss_dssp             CCCEEEEEEESSCSSCCCEEEEECCSSSEEEEEEECSSSEEEEEEEEESSCB
T ss_pred             CceEEEEEEecCCCCceeEEEEEECCCCEEEEEEEeCCCeEEEEEEEECCEE
Confidence            3578999999986  222 222333456444  7778899999988866543

>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.09  E-value=12  Score=25.73  Aligned_cols=54  Identities=13%  Similarity=0.275  Sum_probs=35.4

Q ss_pred             EEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeecccee-eEEEEeeecccEEEEEEecC
Q 028261           47 KYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG-QFAFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        47 ~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~~g-~~~f~~~~~G~y~~Cf~n~~  106 (211)
                      .|.+...+++     ...+.+.|.+|++..+--.. ..+| ..+|++++.|.|.+...-..
T Consensus        41 ~F~v~t~daG-----~~~l~v~i~gp~~~~~~~~d-~~dGy~V~Y~P~~~G~y~I~V~~~g   95 (125)
T 2eec_A           41 EFFINTTRAG-----PGTLSVTIEGPSKVKMDCQE-TPEGYKVMYTPMAPGNYLISVKYGG   95 (125)
T ss_dssp             EEEEECTTTC-----SCCEEEEEESSSCCCCEEEE-CSSSEEEEECCSSCEEEEEEEEESS
T ss_pred             EEEEEEcCCC-----CCcEEEEEECCCCCcceeEE-CCCCEEEEEEcCCCeEEEEEEEECC
Confidence            4555544432     46889999999986543322 3355 34477789999999887665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	97.38
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	94.76
d1wmda1	116	Alkaline serine protease kp-43, C-terminal domain	93.02
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	92.05
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.74
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	90.77
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	90.07
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	89.83
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.76
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	89.48
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	89.32
d1qfha2	108	F-actin cross-linking gelation factor (ABP-120) re	88.74
d1qfha1	104	F-actin cross-linking gelation factor (ABP-120) re	88.63
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	87.54
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	87.21
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	87.17
d2d7na1	80	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	86.68
d1nqja_	101	Class 1 collagenase {Bacteria (Clostridium histoly	85.77
d2dmca1	103	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	83.9
d2di9a1	118	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	80.35

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.0011  Score=44.76  Aligned_cols=85  Identities=12%  Similarity=0.134  Sum_probs=52.3

Q ss_pred             EEEEeCCCcceEEEEcCC-CcEEEEEEEEecCCCCCCCCCCceEEEEEEc--CCC--------CeEEeeeccc------e
Q 028261           23 RFEIQSAHTKCIAEDIKS-NSMTVGKYNVVNPNDGHPLPESHKLTVRVTS--AYG--------NSYHYADRVD------S   85 (211)
Q Consensus        23 ~f~l~~g~~~Cf~~~v~~-~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~--p~g--------~~i~~~~~~~------~   85 (211)
                      ++.|.+|+.......+.. |..+.=.|.+.          +.+|.+.|.=  ..|        ..+....+..      .
T Consensus         7 tvtV~~G~~~~v~~~v~~~Gs~l~WeF~t~----------~~DI~Fgv~~~~~~~~~~~~~~~~~v~p~~r~~s~~~p~~   76 (119)
T d1olma2           7 SVQISRGSSHQVEYEILFPGCVLRWQFMSD----------GADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPED   76 (119)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEES----------SSCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEE
T ss_pred             EEEECCCCEEEEEEEEeCCCcEEEEEEEeC----------CccEEEEEEEecccCCccccCceEEEeeeEEecCCceeEc
Confidence            456888888777777764 77777666653          2466666652  111        1233222111      2


Q ss_pred             eeEEEEeeecccEEEEEEecCCC-CceeEEEEEEE
Q 028261           86 GQFAFTAAEAGDYMACFWAVDHS-PQTTVTIDFDW  119 (211)
Q Consensus        86 g~~~f~~~~~G~y~~Cf~n~~~~-~~~~v~v~~~~  119 (211)
                      |.  |.++++|.|.+||+|+.+. ..|.+...+++
T Consensus        77 g~--~~~~~~G~Y~l~FDNs~S~~~sK~l~Y~i~v  109 (119)
T d1olma2          77 GT--LTCSDPGIYVLRFDNTYSFIHAKKVNFTVEV  109 (119)
T ss_dssp             EE--EECCSCEEEEEEEECTTCCCCSEEEEEEEEE
T ss_pred             cE--EEcCCCEEEEEEEeCCcceEEeeEEEEEEEE
Confidence            44  7778999999999999886 45555555554

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.11  Score=33.29  Aligned_cols=54  Identities=17%  Similarity=0.228  Sum_probs=36.1

Q ss_pred             CceEEEEEEcCCCCeEEee-eccceee--EEEEeeecccEEEEEEecCCC-CceeEEE
Q 028261           62 SHKLTVRVTSAYGNSYHYA-DRVDSGQ--FAFTAAEAGDYMACFWAVDHS-PQTTVTI  115 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~~~-~~~~v~v  115 (211)
                      ...+.+.|.+|+|+.+--. ....+|.  .+|++++.|.|.+...-.... +.....+
T Consensus        36 ~g~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~~I~gSPF~v   93 (102)
T d2d7ma1          36 EGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRI   93 (102)
T ss_dssp             SSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSCBCTTCSEEE
T ss_pred             CCcEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEEECCEECCCCCEEE
Confidence            4578999999999755321 2233564  478889999999998765443 3334433

>d1wmda1 b.18.1.20 (A:319-434) Alkaline serine protease kp-43, C-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Proprotein convertase P-domain
domain: Alkaline serine protease kp-43, C-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

Probab=93.02  E-value=0.4  Score=31.39  Aligned_cols=81  Identities=11%  Similarity=0.083  Sum_probs=52.2

Q ss_pred             EEeCCCcceEEEEcCCCcEEEEEEEEecCCCCCCCCC--CceEEEEEEcCCCCeEEeeec-----------cceeeEEEE
Q 028261           25 EIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPE--SHKLTVRVTSAYGNSYHYADR-----------VDSGQFAFT   91 (211)
Q Consensus        25 ~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~--~~~i~~~v~~p~g~~i~~~~~-----------~~~g~~~f~   91 (211)
                      .|.+|+..=|...++++..+.+.....++.+....+.  -.++++.|.+|+|..++-...           -.-.+..+.
T Consensus         8 ~l~~g~~~ty~~~v~~~~~l~vtL~W~D~p~s~~a~~~LvnDLDL~V~~p~G~~~~~n~~~~~~~~~~D~~nnvE~V~i~   87 (116)
T d1wmda1           8 SLSTSQKATYSFTATAGKPLKISLVWSDAPASTTASVTLVNDLDLVITAPNGTQYVGNDFTSPYNDNWDGRNNVENVFIN   87 (116)
T ss_dssp             EECTTCEEEEEEEECTTSCEEEEEECCCCCCCTTCSCCCCSEEEEEEECTTSCEEETTCCSSSTTSCCCSSCSEEEEEES
T ss_pred             cCCCCCeEEEEEEeCCCCCEEEEEEeeCCCCCCCcchheeeeeeEEEEcCCCCEEeCCccccCccCccccCCcEeEEEEC
Confidence            4667777777777887777777766666543211111  349999999999987642210           012466666


Q ss_pred             eeecccEEEEEEec
Q 028261           92 AAEAGDYMACFWAV  105 (211)
Q Consensus        92 ~~~~G~y~~Cf~n~  105 (211)
                      .+..|+|++-....
T Consensus        88 ~p~~G~y~i~V~~~  101 (116)
T d1wmda1          88 APQSGTYTIEVQAY  101 (116)
T ss_dssp             SCCSEEEEEEEEEE
T ss_pred             CCCCeEEEEEEEEE
Confidence            67889998877654

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=0.77  Score=28.39  Aligned_cols=43  Identities=14%  Similarity=0.190  Sum_probs=31.6

Q ss_pred             CceEEEEEEcCCCCeEEeeeccceeeE--EEEeeecccEEEEEEec
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSGQF--AFTAAEAGDYMACFWAV  105 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g~~--~f~~~~~G~y~~Cf~n~  105 (211)
                      ...+.+.|.+|.+..+.-.. ..+|.|  +|++++.|.|.+-..-.
T Consensus        33 ~g~l~v~v~~p~~~~~~v~~-~~dg~y~v~ytP~~~G~h~i~V~~~   77 (92)
T d2bp3a1          33 EGGLSLAIEGPSKAEISCTD-NQDGTCSVSYLPVLPGDYSILVKYN   77 (92)
T ss_dssp             SEEEEEEEEESSCCEEEEEE-CSSSEEEEEEECSSCEEEEEEEEET
T ss_pred             CCceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCccEEEEEEEC
Confidence            45889999999997665443 345655  48899999998876544

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.78  Score=29.45  Aligned_cols=55  Identities=22%  Similarity=0.286  Sum_probs=36.9

Q ss_pred             CceEEEEEEcCCCCeEEe-eecccee--eEEEEeeecccEEEEEEecCCC-CceeEEEE
Q 028261           62 SHKLTVRVTSAYGNSYHY-ADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~-~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~v~v~  116 (211)
                      ...+.+.|.+|+|+.+.- -.+..+|  ..+|++++.|.|++...-.... ......+.
T Consensus        35 ~g~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~~~g~~I~gSPf~v~   93 (111)
T d2dmba1          35 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTVM   93 (111)
T ss_dssp             SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             CCcEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEEECCEECCCCCEEEE
Confidence            457899999999876532 2223455  4568889999999998876544 33334443

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=1.1  Score=27.99  Aligned_cols=54  Identities=15%  Similarity=0.269  Sum_probs=35.6

Q ss_pred             CceEEEEEEcCCCCeEEeeeccceeeE--EEEeeecccEEEEEEecCCC-CceeEEEE
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSGQF--AFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g~~--~f~~~~~G~y~~Cf~n~~~~-~~~~v~v~  116 (211)
                      ..++++.|.+|++..+.-.+ ..+|.|  +|++.+.|.|.+...-.... +....++.
T Consensus        34 ~g~l~v~i~gp~~~~v~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v~   90 (98)
T d2di8a1          34 YGGISLAVEGPSKVDIQTED-LEDGTCKVSYFPTVPGVYIVSTKFADEHVPGSPFTVK   90 (98)
T ss_dssp             BCCEEEEEESSSCCCEECCB-CTTSCEEEEECCCSCSEEEEEEEESSCBCTTCSEEEE
T ss_pred             CCceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEEE
Confidence            34789999999887664332 335544  58889999999997665443 33344443

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.07  E-value=1.1  Score=27.81  Aligned_cols=44  Identities=14%  Similarity=0.194  Sum_probs=32.0

Q ss_pred             CceEEEEEEcCCCCeEEeeeccceeeEEEEeeecccEEEEEEec
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAV  105 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~~~G~y~~Cf~n~  105 (211)
                      ...+.+.+.+|++..+--..+...-..+|++.+.|.|.+...-.
T Consensus        34 ~~~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~~~   77 (97)
T d2nqca1          34 SGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYG   77 (97)
T ss_dssp             SCCEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEEES
T ss_pred             CCceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEEEC
Confidence            45889999999987665443332335678889999999998644

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.83  E-value=1.2  Score=27.82  Aligned_cols=46  Identities=17%  Similarity=0.109  Sum_probs=32.8

Q ss_pred             ceEEEEEEcCCCCeEEee-eccceeeE--EEEeeecccEEEEEEecCCC
Q 028261           63 HKLTVRVTSAYGNSYHYA-DRVDSGQF--AFTAAEAGDYMACFWAVDHS  108 (211)
Q Consensus        63 ~~i~~~v~~p~g~~i~~~-~~~~~g~~--~f~~~~~G~y~~Cf~n~~~~  108 (211)
                      ..+++.|.+|+|..+--. .+..+|.|  +|++.+.|.|.+...-....
T Consensus        34 g~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~~g~~   82 (99)
T d2d7pa1          34 GVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAH   82 (99)
T ss_dssp             SCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCB
T ss_pred             CeEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEECCEE
Confidence            478999999999765322 22345544  58888999999998876544

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.76  E-value=1.4  Score=27.51  Aligned_cols=46  Identities=24%  Similarity=0.279  Sum_probs=32.3

Q ss_pred             CceEEEEEEcCCCCeEEe-eeccceee--EEEEeeecccEEEEEEecCC
Q 028261           62 SHKLTVRVTSAYGNSYHY-ADRVDSGQ--FAFTAAEAGDYMACFWAVDH  107 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~-~~~~~~g~--~~f~~~~~G~y~~Cf~n~~~  107 (211)
                      ...+++.|.+|+|..+-- -.+..+|.  .+|++++.|.|++-..-...
T Consensus        35 ~g~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~~~g~   83 (101)
T d2dj4a1          35 LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADE   83 (101)
T ss_dssp             SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESSS
T ss_pred             CCCEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECCE
Confidence            457899999999986532 22334554  45788899999988765543

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.48  E-value=1.2  Score=27.50  Aligned_cols=44  Identities=20%  Similarity=0.334  Sum_probs=32.2

Q ss_pred             CceEEEEEEcCCCCeEEeeeccceeeE--EEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSGQF--AFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g~~--~f~~~~~G~y~~Cf~n~~  106 (211)
                      ...+++.|.+|++..+.-.+ ..+|.|  +|++++.|.|.+...-..
T Consensus        32 ~g~l~v~v~gp~~~~v~v~d-~~dg~y~v~ytP~~~G~y~i~V~~~g   77 (92)
T d2w0pa1          32 AGGLAIAVEGPSKAEISFED-RKDGSCGVAYVVQEPGDYEVSVKFNE   77 (92)
T ss_dssp             SCCEEEEEEESSCCEEEEEE-CTTSCEEEEEECSSCEEEEEEEEETT
T ss_pred             CCceEEEEEeCCceEEEEEE-CCCCEEEEEEEECCCceEEEEEEECC
Confidence            35788899999987664333 345644  789999999999877654

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.32  E-value=1  Score=27.93  Aligned_cols=45  Identities=20%  Similarity=0.295  Sum_probs=31.6

Q ss_pred             CceEEEEEEcCCCCeEE-eeecccee--eEEEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYH-YADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~-~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  106 (211)
                      ...+++.|.+|+|..+- +-.+..+|  ...|++++.|.|++...-..
T Consensus        36 ~g~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~~~g   83 (96)
T d1v05a_          36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence            34789999999986542 22233455  45688899999999987654

>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.74  E-value=1.9  Score=27.45  Aligned_cols=45  Identities=16%  Similarity=0.171  Sum_probs=30.9

Q ss_pred             CceEEEEEEcCCCCeEEeeeccceeeE--EEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSGQF--AFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g~~--~f~~~~~G~y~~Cf~n~~  106 (211)
                      ...+.+.|.+|.+.+-..-.+..+|.|  .|++...|.|.+...-..
T Consensus        30 ~~~~~v~i~gp~~~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~g   76 (108)
T d1qfha2          30 GDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNG   76 (108)
T ss_dssp             CCCEEEEEEECCSEEEEEEEECSSSEEEEEEEEESSEEEEEEEEETT
T ss_pred             CCeEEEEEECCCcccccEEEECCCCEEEEEEEECcceeEEEEEEECC
Confidence            457889999998764333333445544  477889999998877554

>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.63  E-value=1.1  Score=28.09  Aligned_cols=45  Identities=13%  Similarity=0.223  Sum_probs=31.7

Q ss_pred             CceEEEEEEcCCCCeEEee-eccceeeE--EEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYHYA-DRVDSGQF--AFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~-~~~~~g~~--~f~~~~~G~y~~Cf~n~~  106 (211)
                      +..+.+.|.+|+|..+-.. .+..+|.|  +|++...|.|.+-..-..
T Consensus        43 g~~~~v~v~~p~g~~~~~~v~d~~dGtY~v~y~p~~~G~~~i~V~~~g   90 (104)
T d1qfha1          43 GDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRG   90 (104)
T ss_dssp             CCCEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEETT
T ss_pred             CceeEEEEECCCCCEEeeEEEECCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            4578999999998765322 23345655  578888999998876553

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.54  E-value=1.2  Score=27.75  Aligned_cols=46  Identities=15%  Similarity=0.169  Sum_probs=32.4

Q ss_pred             CceEEEEEEcCCCCeEEe-eecccee--eEEEEeeecccEEEEEEecCC
Q 028261           62 SHKLTVRVTSAYGNSYHY-ADRVDSG--QFAFTAAEAGDYMACFWAVDH  107 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~-~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~  107 (211)
                      ...+++.|.+|+|..+.- -.+..+|  ..+|++++.|.|++.+.-...
T Consensus        34 ~~~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~   82 (100)
T d2diaa1          34 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGE   82 (100)
T ss_dssp             SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETTE
T ss_pred             CCcEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEEECCE
Confidence            457899999999875422 2223445  556888999999999876543

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.21  E-value=2.1  Score=26.48  Aligned_cols=44  Identities=16%  Similarity=0.169  Sum_probs=31.3

Q ss_pred             CceEEEEEEcCCCCeEEeeeccceeeE--EEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSGQF--AFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g~~--~f~~~~~G~y~~Cf~n~~  106 (211)
                      ..++.+.|.+|++..+--.. ..+|.|  +|++++.|.|.+...-..
T Consensus        34 ~g~l~v~v~~p~~~~~~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g   79 (98)
T d2dica1          34 IGGLGITVEGPSESKINCRD-NKDGSCSAEYIPFAPGDYDVNITYGG   79 (98)
T ss_dssp             SSCEEEEEESSSCCCCEEEE-CSSSCEEEEECCSSCEEEEEEEEETT
T ss_pred             CCCcEEEEEeCCCcEEEEEE-CCCCEEEEEEEECCCceEEEEEEECC
Confidence            34788999999887553322 245554  488889999999987654

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.17  E-value=0.23  Score=30.78  Aligned_cols=45  Identities=20%  Similarity=0.213  Sum_probs=29.4

Q ss_pred             CceEEEEEEcCCCCeEEee-eccceeeE--EEEeeecccEEEEEEecC
Q 028261           62 SHKLTVRVTSAYGNSYHYA-DRVDSGQF--AFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~-~~~~~g~~--~f~~~~~G~y~~Cf~n~~  106 (211)
                      ..++.+.|.+|+|+.+-.. ....+|.|  +|++.+.|.|.+-+.-..
T Consensus        23 ~g~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~~~g   70 (88)
T d2j3sa2          23 IQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKG   70 (88)
T ss_dssp             CCCEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEEECC
Confidence            3479999999999876432 22345654  488889999988877554

>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.68  E-value=2.1  Score=25.65  Aligned_cols=55  Identities=15%  Similarity=0.126  Sum_probs=36.0

Q ss_pred             CceEEEEEEcCCCCeEEee-ecccee--eEEEEeeecccEEEEEEecCCC-CceeEEEE
Q 028261           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~v~v~  116 (211)
                      ..++.+.|++|+|..+-.. .+..+|  ..+|+..+.|.|.+=....... .+....|.
T Consensus        14 ~g~l~~~v~~P~G~~~~~~v~~~~dg~y~v~y~P~~~G~h~v~V~~~g~~I~gSPf~v~   72 (80)
T d2d7na1          14 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFY   72 (80)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEEE
T ss_pred             CCcEEEEEECCCCCEeceEEEECCCCEEEEEEEECCcEEEEEEEEECCEECCCCCEEEE
Confidence            4589999999999865321 223355  4557888999998877766543 33444443

>d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}

class: All beta proteins
fold: CUB-like
superfamily: Collagen-binding domain
family: Collagen-binding domain
domain: Class 1 collagenase
species: Bacteria (Clostridium histolyticum) [TaxId: 1498]

Probab=85.77  E-value=2.6  Score=26.02  Aligned_cols=69  Identities=7%  Similarity=0.016  Sum_probs=41.8

Q ss_pred             CCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeecccee--eEEEEeeecccEEEEEEecC
Q 028261           29 AHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (211)
Q Consensus        29 g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~  106 (211)
                      ....-|...++++..+.+...-  ..       +.++++.+++++|..+........+  ........+|.|-+=.....
T Consensus        20 dd~D~y~f~l~~~~~v~i~l~~--~~-------~~d~~l~lyd~~g~~~~~~~~~~~~~~~~~~~~~~~GtYyi~V~~~~   90 (101)
T d1nqja_          20 DSRDYYSFEVKEEGEVNIELDK--KD-------EFGVTWTLHPESNINDRITYGQVDGNKVSNKVKLRPGKYYLLVYKYS   90 (101)
T ss_dssp             CCEEEEEEEESSCEEEEEEEEE--SS-------SSEEEEEEEECC----CCEECEEETTEEEEEEEECSEEEEEEEEEEE
T ss_pred             CcceEEEEECCCCCEEEEEEeC--Cc-------cCCeEEEEEcCCCCEEEEecCCCCCceEEEEEecCCeEEEEEEEecC
Confidence            4466777888888888776543  22       3588999999999877654333222  23333446888888776543

>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.90  E-value=0.49  Score=29.92  Aligned_cols=42  Identities=17%  Similarity=0.300  Sum_probs=28.5

Q ss_pred             CceEEEEEEcCCCCeEE-eeeccceeeE--EEEeeecccEEEEEE
Q 028261           62 SHKLTVRVTSAYGNSYH-YADRVDSGQF--AFTAAEAGDYMACFW  103 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~-~~~~~~~g~~--~f~~~~~G~y~~Cf~  103 (211)
                      ..++++.|.+|+|+.+- +-....+|.|  +|++++.|.|++=..
T Consensus        37 ~g~l~v~v~~P~g~~v~~~v~~~~dg~y~v~f~P~~~G~h~i~V~   81 (103)
T d2dmca1          37 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIK   81 (103)
T ss_dssp             STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECB
T ss_pred             CCcEEEEEECCCCCEeccEEEECCCCEEEEEEEeCCceeEEEEEE
Confidence            35788999999997652 2222334544  588889999987543

>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.35  E-value=5.2  Score=25.41  Aligned_cols=46  Identities=13%  Similarity=0.270  Sum_probs=33.1

Q ss_pred             CceEEEEEEcCCCCeEEeeeccceee--EEEEeeecccEEEEEEecCCC
Q 028261           62 SHKLTVRVTSAYGNSYHYADRVDSGQ--FAFTAAEAGDYMACFWAVDHS  108 (211)
Q Consensus        62 ~~~i~~~v~~p~g~~i~~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~~~  108 (211)
                      ...+.+.|.+|++..+.-.+ ..+|.  .+|++.+.|.|++...-....
T Consensus        54 ~g~l~v~i~~p~~~~~~v~~-~~dG~y~v~ytP~~~G~y~i~V~~~g~~  101 (118)
T d2di9a1          54 TGGLGLTVEGPCEAKIECSD-NGDGTCSVSYLPTKPGEYFVNILFEEVH  101 (118)
T ss_dssp             SSCEEEEECSSSCCEEEEEE-CSSSEEEEEEECSSSSEEEEEEEESSCB
T ss_pred             CCccEEEEecCCceEEEEEE-CCCCEEEEEEEeCCcEeEEEEEEECCEE
Confidence            35788999999987654333 34554  458888999999998876544