Citrus Sinensis ID: 028289

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPAGLFFSHIILFLFLNFRLKLL
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEcEEEEEEccEEEEcccccEEEEEEcccccEEEEEEEcccccccccEEEEcccEEEEEccccccEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEEEEEEEcccEEcccccccEEEEEEccccEEEEEEEEcccccccccEEEEccccEEEEccccccEEEEEEEccccccEEEEEEccccccHHHHHHHHHHHHcccccccccHcccccccccccccccccccccccccccccccccHcccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mgssstaasPAMQEILLEFRAgkmtfdgkkvvpdsrkgLVRIArgehglihfqwldrtrnvveddqivfpheAVFEKVNQASGRVYILKFNTDDRKFFLwmqepkaeedsqlcnsvnyfinrplvfvneeeldasvplqvsedmveddvssragnlvvpnlggeaisdvtsssgpvklEDLQRIFSnigpaglffSHIILFLFLNFRLKLL
Flexible Loop (DISEMBL)
mgssstaaspaMQEILLEFRAGkmtfdgkkvvpdsrKGLVRIArgehglihfqwldrTRNVVEDDQIVFPHEAVfekvnqasgRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPAGLFFSHIILFLFLNFRLKLL
Low Complexity Region (SEG)
MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPAGlffshiilflflnfrlkll
Disordered region (IsUnstruct)
**************ILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKA*EDSQLCNSVNYFINRPLVFVNEEELDA*********************LVVP****************VKLEDLQRIFSNIGPAGLFFSHIILFLFLNFRLK**
Disordered Region (DISOPRED)
*****************EFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINR*********************************************************************GLFFSHIILFLFLNFRLKLL
Disordered Region (DISEMBL)
**********AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSE********SRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPAGLFFSHIILFLFLNFRLKLL
Disordered Region (DISPRO)
************QEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP***************************************************PVKLEDLQRIFSNIGPAGLFFSHIILFLFLNFRLKLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPAGLFFSHIILFLFLNFRLKLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q6NZ09	410	Proteasomal ubiquitin rec	yes	no	0.521	0.268	0.513	1e-30
Q6P877	404	Proteasomal ubiquitin rec	yes	no	0.521	0.272	0.504	3e-30
Q6GN67	404	Proteasomal ubiquitin rec	N/A	no	0.521	0.272	0.495	7e-30
Q16186	407	Proteasomal ubiquitin rec	yes	no	0.535	0.277	0.508	8e-30
Q9JMB5	407	Proteasomal ubiquitin rec	yes	no	0.511	0.265	0.522	1e-29
Q7ZXD6	404	Proteasomal ubiquitin rec	N/A	no	0.521	0.272	0.495	1e-29
A1L5A6	407	Proteasomal ubiquitin rec	yes	no	0.511	0.265	0.522	1e-29
Q9JKV1	407	Proteasomal ubiquitin rec	yes	no	0.511	0.265	0.522	1e-29
Q98SH3	406	Proteasomal ubiquitin rec	yes	no	0.521	0.270	0.504	4e-29
Q7K2G1	389	Proteasomal ubiquitin rec	yes	no	0.507	0.275	0.5	1e-27

>sp|Q6NZ09|ADRM1_DANRE Proteasomal ubiquitin receptor ADRM1 OS=Danio rerio GN=adrm1b PE=1 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 74/111 (66%), Gaps = 1/111 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           + L+EFRAGKMT  G  V PD RKG V I + +  LIHF W DRT   VEDD I+FP + 
Sbjct: 20  KYLVEFRAGKMTLKGSTVTPDKRKGTVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDC 79

Query: 74  VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            F++VNQ  +GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct: 80  EFKRVNQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDDEYCRKVNEYLNNP 130

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.
Danio rerio (taxid: 7955)

>sp|Q6P877|ADRM1_XENTR Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tropicalis GN=adrm1 PE=2 SV=1

 Score =  131 bits (330), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 75/111 (67%), Gaps = 1/111 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP + 
Sbjct: 20  KYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDC 79

Query: 74  VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            F++V+Q  +GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct: 80  EFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKVNEYLNNP 130

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.

Xenopus tropicalis (taxid: 8364)

>sp|Q6GN67|ADM1A_XENLA Proteasomal ubiquitin receptor ADRM1-A OS=Xenopus laevis GN=adrm1-a PE=2 SV=2

 Score =  130 bits (327), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 75/111 (67%), Gaps = 1/111 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP + 
Sbjct: 20  KYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDC 79

Query: 74  VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            F++V+Q  +GRVY+LKF    ++ F WMQEPK ++D + C  +N ++N P
Sbjct: 80  EFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKLNEYLNNP 130

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome (By similarity). Required during gastrulation.

Xenopus laevis (taxid: 8355)

>sp|Q16186|ADRM1_HUMAN Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2

 Score =  130 bits (326), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 11  AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFP 70
           A  + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP
Sbjct: 18  ASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFP 77

Query: 71  HEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            +  F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct: 78  DDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131

Functions as a proteasomal ubiquitin receptor. Recruits the deubiquitinating enzyme UCHL5 at the 26S proteasome and promotes its activity.

Homo sapiens (taxid: 9606)

>sp|Q9JMB5|ADRM1_RAT Proteasomal ubiquitin receptor ADRM1 OS=Rattus norvegicus GN=Adrm1 PE=2 SV=2

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 72/109 (66%), Gaps = 1/109 (0%)

Query: 16  LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
           L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct: 23  LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEF 82

Query: 76  EKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
           ++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN  +N P
Sbjct: 83  KRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131

Functions as a proteasomal ubiquitin receptor. Recruits and activates the deubiquitinating enzyme UCHL5 at the 26S proteasome.

Rattus norvegicus (taxid: 10116)

>sp|Q7ZXD6|ADM1B_XENLA Proteasomal ubiquitin receptor ADRM1-B OS=Xenopus laevis GN=adrm1-b PE=2 SV=1

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 75/111 (67%), Gaps = 1/111 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   V+DD I+FP + 
Sbjct: 20  KYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVDDDLIIFPDDC 79

Query: 74  VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            F++V+Q  +GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct: 80  EFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 130

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.

Xenopus laevis (taxid: 8355)

>sp|A1L5A6|ADRM1_BOVIN Proteasomal ubiquitin receptor ADRM1 OS=Bos taurus GN=ADRM1 PE=2 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 73/109 (66%), Gaps = 1/109 (0%)

Query: 16  LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
           L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct: 23  LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEF 82

Query: 76  EKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
           ++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct: 83  KRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131

Functions as a proteasomal ubiquitin receptor. Recruits the deubiquitinating enzyme UCHL5 at the 26S proteasome and promotes its activity.

Bos taurus (taxid: 9913)

>sp|Q9JKV1|ADRM1_MOUSE Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1 PE=1 SV=2

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 72/109 (66%), Gaps = 1/109 (0%)

Query: 16  LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
           L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct: 23  LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEF 82

Query: 76  EKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
           ++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN  +N P
Sbjct: 83  KRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131

Functions as a proteasomal ubiquitin receptor. Recruits the deubiquitinating enzyme UCHL5 at the 26S proteasome and promotes its activity.

Mus musculus (taxid: 10090)

>sp|Q98SH3|ADRM1_CHICK Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1 PE=2 SV=1

 Score =  128 bits (321), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 74/111 (66%), Gaps = 1/111 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP + 
Sbjct: 21  KYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDC 80

Query: 74  VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            F++V Q  +GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct: 81  EFKRVPQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 131

Functions as a proteasomal ubiquitin receptor. Promotes the deubiquitinating activity associated with the 26S proteasome.

Gallus gallus (taxid: 9031)

>sp|Q7K2G1|ADRM1_DROME Proteasomal ubiquitin receptor ADRM1 homolog OS=Drosophila melanogaster GN=CG13349 PE=1 SV=1

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 74/108 (68%), Gaps = 1/108 (0%)

Query: 17  LEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFE 76
           +EFRAG+M   GK V PD RKGLV + + + GL+HF W DRT   VEDD IVFP +  ++
Sbjct: 18  VEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGLMHFCWKDRTSGKVEDDLIVFPDDFEYK 77

Query: 77  KVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
           +V+Q  +GRVY+LKF +  R+ F WMQEPK ++D + C  +N  +N P
Sbjct: 78  RVDQCKTGRVYVLKFKSSTRRMFFWMQEPKTDKDDEQCRRINELLNNP 125

May function as a proteasomal ubiquitin receptor. May promote the deubiquitinating activity associated with the 26S proteasome.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
224087341	313	predicted protein [Populus trichocarpa]	0.938	0.632	0.787	3e-87
225445652	320	PREDICTED: proteasomal ubiquitin recepto	0.905	0.596	0.785	2e-83
255563882	557	adhesion regulating molecule, putative [	0.829	0.314	0.835	1e-81
388496234	316	unknown [Medicago truncatula]	0.905	0.604	0.755	4e-80
356513237	321	PREDICTED: proteasomal ubiquitin recepto	0.900	0.591	0.753	3e-79
388502850	318	unknown [Lotus japonicus]	0.890	0.591	0.767	4e-79
356523747	321	PREDICTED: proteasomal ubiquitin recepto	0.900	0.591	0.748	9e-79
357520621	312	Proteasomal ubiquitin receptor ADRM1 [Me	0.857	0.580	0.752	4e-76
224073444	223	predicted protein [Populus trichocarpa]	0.900	0.852	0.716	5e-74
18401185	300	regulatory particle non-ATPase 13 [Arabi	0.890	0.626	0.692	5e-71

>gi|224087341|ref|XP_002308128.1| predicted protein [Populus trichocarpa] gi|222854104|gb|EEE91651.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/198 (78%), Positives = 171/198 (86%)

Query: 2   GSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNV 61
            SSS  A PAMQEI+LEFRAGKM FDGKKVVPD RKGLVR+ RGE GL+HFQWLDR  N 
Sbjct: 3   ASSSAEAIPAMQEIMLEFRAGKMVFDGKKVVPDLRKGLVRVGRGEEGLLHFQWLDRNLNA 62

Query: 62  VEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFIN 121
           VEDDQI+FP EAVFEKVNQ SGRVYILKFNTDDRK F WMQEPKAEEDSQLC+SVNY+IN
Sbjct: 63  VEDDQIIFPEEAVFEKVNQVSGRVYILKFNTDDRKLFFWMQEPKAEEDSQLCSSVNYYIN 122

Query: 122 RPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDL 181
            PL F++EEE DA+ PLQVSEDM+ED+VSSRAG+LVVPNLG EAISDVTSSSGPVK+EDL
Sbjct: 123 LPLEFLDEEEPDAAAPLQVSEDMLEDNVSSRAGDLVVPNLGAEAISDVTSSSGPVKMEDL 182

Query: 182 QRIFSNIGPAGLFFSHII 199
           QRI SNIG  GL    ++
Sbjct: 183 QRILSNIGARGLGLGDLL 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445652|ref|XP_002265472.1| PREDICTED: proteasomal ubiquitin receptor ADRM1 [Vitis vinifera] gi|297736028|emb|CBI24066.3| unnamed protein product [Vitis vinifera]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 150/191 (78%), Positives = 164/191 (85%)

Query: 1   MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRN 60
           MGSSS    P MQEI+LEFRAGKM F+G +V PD+RKGLVRIA+GE GL+HFQWLDRT N
Sbjct: 1   MGSSSADTFPVMQEIMLEFRAGKMVFEGTRVTPDARKGLVRIAKGEEGLVHFQWLDRTNN 60

Query: 61  VVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFI 120
           V+EDDQIVFP EAVFEKVNQASGR+YILKFNTD+RKFF WMQEPKAE DSQLCNSVNY I
Sbjct: 61  VLEDDQIVFPDEAVFEKVNQASGRIYILKFNTDNRKFFFWMQEPKAEGDSQLCNSVNYHI 120

Query: 121 NRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLED 180
           NRPL F+ EEE D S P+Q+SEDMVEDD+SSRAGNLV P+LG E  SDVTS SGPVKL D
Sbjct: 121 NRPLEFLGEEEQDVSGPVQISEDMVEDDISSRAGNLVGPSLGAEVTSDVTSLSGPVKLAD 180

Query: 181 LQRIFSNIGPA 191
           LQRI SNI PA
Sbjct: 181 LQRILSNIEPA 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563882|ref|XP_002522941.1| adhesion regulating molecule, putative [Ricinus communis] gi|223537835|gb|EEF39452.1| adhesion regulating molecule, putative [Ricinus communis]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 147/176 (83%), Positives = 160/176 (90%), Gaps = 1/176 (0%)

Query: 14  EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
           E +LEFRAGKM F+ KKV+PD+RKGLVRIARGE GL+HFQWLDR RNVVEDDQI+FP EA
Sbjct: 252 ETMLEFRAGKMFFEEKKVIPDTRKGLVRIARGEEGLVHFQWLDRNRNVVEDDQIIFPDEA 311

Query: 74  VFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELD 133
           VFEKVNQASGRVYILKFNTDDRKFF WMQEPKAE+D QLC+SVNY+INRPL F+ EEE D
Sbjct: 312 VFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDWQLCSSVNYYINRPLEFLGEEEPD 371

Query: 134 ASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIG 189
           A  PLQVSEDMVEDD+SSRAGNLVVPNLG E +SDV+SSSGPVKLEDLQRI SNIG
Sbjct: 372 AYAPLQVSEDMVEDDISSRAGNLVVPNLGAE-VSDVSSSSGPVKLEDLQRILSNIG 426

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496234|gb|AFK36183.1| unknown [Medicago truncatula]

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 145/192 (75%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 1   MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRN 60
           M SSS  A PA+QE LLEFRAGKM+ +GK+VVPD+RKGLVRIARGE GL+HFQWLDRT N
Sbjct: 1   MSSSSIDAFPAIQETLLEFRAGKMSLEGKRVVPDARKGLVRIARGEEGLVHFQWLDRTLN 60

Query: 61  VVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFI 120
           VVEDDQI+FP+EA+FE+VNQ SGRVYILKFN+DDRKFF WMQE  A+ DSQLC+SVN ++
Sbjct: 61  VVEDDQIIFPNEAIFEQVNQTSGRVYILKFNSDDRKFFFWMQESNADNDSQLCSSVNDYL 120

Query: 121 NRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLED 180
           NRPL  + EEE D S+PL+VSEDMVEDD+SSRA NLVVPN G +A SDVT SSGPVKL D
Sbjct: 121 NRPLELLGEEEPDVSLPLEVSEDMVEDDISSRAANLVVPNFGVDATSDVT-SSGPVKLAD 179

Query: 181 LQRIFSNIGPAG 192
           LQRI SNIGPA 
Sbjct: 180 LQRILSNIGPAA 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513237|ref|XP_003525320.1| PREDICTED: proteasomal ubiquitin receptor ADRM1-like [Glycine max]

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 144/191 (75%), Positives = 164/191 (85%), Gaps = 1/191 (0%)

Query: 1   MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRN 60
           M SSS    PA+QE++LEFRAGKM  + K+VVPD+RKGLVRIARGE GL+HFQWLDRT+N
Sbjct: 1   MSSSSADVFPAIQEVMLEFRAGKMFLEEKRVVPDTRKGLVRIARGEEGLVHFQWLDRTQN 60

Query: 61  VVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFI 120
           VVEDDQI+FP+EA+FEKVNQ SGRVYILKFN+DDRKFF WMQE  A+ DSQLC+SVN +I
Sbjct: 61  VVEDDQIIFPNEAIFEKVNQTSGRVYILKFNSDDRKFFFWMQESNADGDSQLCSSVNDYI 120

Query: 121 NRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLED 180
           NRPL  + EEE D S+PLQ+SEDM EDD+SSRA NL +PNLG EA SDVT SSGPVKLED
Sbjct: 121 NRPLELLGEEEPDGSLPLQISEDMTEDDISSRAANLGIPNLGVEATSDVT-SSGPVKLED 179

Query: 181 LQRIFSNIGPA 191
           LQRI SNIGPA
Sbjct: 180 LQRILSNIGPA 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502850|gb|AFK39491.1| unknown [Lotus japonicus]

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 145/189 (76%), Positives = 164/189 (86%), Gaps = 1/189 (0%)

Query: 3   SSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVV 62
           SSS+ A PA+QEI+LEFRAGKM+ +GK+VVPD+RKGLVRIARGE GL+HFQWLDRT NV+
Sbjct: 2   SSSSDAFPAIQEIMLEFRAGKMSLEGKRVVPDTRKGLVRIARGEEGLVHFQWLDRTLNVI 61

Query: 63  EDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINR 122
           EDDQI+FP+EAVFEKVNQASGRVYILKFNTDDRKFF WMQE  A+ DSQLC+SVN +INR
Sbjct: 62  EDDQIIFPNEAVFEKVNQASGRVYILKFNTDDRKFFFWMQESNADNDSQLCSSVNDYINR 121

Query: 123 PLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQ 182
            L F+ EEEL+  +PLQVSEDM EDD+SSRA NL  PNLG EA SDVT SSGPV+LEDLQ
Sbjct: 122 QLDFLGEEELNGDLPLQVSEDMAEDDISSRAANLFAPNLGVEATSDVT-SSGPVRLEDLQ 180

Query: 183 RIFSNIGPA 191
           RI  NIG A
Sbjct: 181 RILGNIGSA 189

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523747|ref|XP_003530496.1| PREDICTED: proteasomal ubiquitin receptor ADRM1-like [Glycine max]

 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 164/191 (85%), Gaps = 1/191 (0%)

Query: 1   MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRN 60
           M SSS    PA+ E++LEFRAGKM  + K+VVPD+RKGLVRIARGE GL+HFQWLDRT+N
Sbjct: 1   MSSSSADVFPAILEVMLEFRAGKMFLEEKRVVPDTRKGLVRIARGEEGLVHFQWLDRTQN 60

Query: 61  VVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFI 120
           +VEDDQI+FP+EA+FEKVNQ SGRVYILKFN+DDRKFF WMQE  A++DSQLC+SVN +I
Sbjct: 61  IVEDDQIIFPNEAIFEKVNQTSGRVYILKFNSDDRKFFFWMQESNADDDSQLCSSVNDYI 120

Query: 121 NRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLED 180
           NRPL  + EEE D S+PLQVSEDM EDD+SSRA NL +PNLG EA SDVT SSGPVKLED
Sbjct: 121 NRPLELLGEEEPDGSLPLQVSEDMAEDDISSRAANLGIPNLGVEATSDVT-SSGPVKLED 179

Query: 181 LQRIFSNIGPA 191
           LQRI SNIGPA
Sbjct: 180 LQRILSNIGPA 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520621|ref|XP_003630599.1| Proteasomal ubiquitin receptor ADRM1 [Medicago truncatula] gi|355524621|gb|AET05075.1| Proteasomal ubiquitin receptor ADRM1 [Medicago truncatula]

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 1/182 (0%)

Query: 11  AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFP 70
           ++ E LLEFRAGKM+ +GK+VVPD+RKGLVRIARGE GL+HFQWLDRT NVVEDDQI+FP
Sbjct: 7   SVNETLLEFRAGKMSLEGKRVVPDARKGLVRIARGEEGLVHFQWLDRTLNVVEDDQIIFP 66

Query: 71  HEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEE 130
           +EA+FE+VNQ SGRVYILKFN+DDRKFF WMQE  A+ DSQLC+SVN ++NRPL  + EE
Sbjct: 67  NEAIFEQVNQTSGRVYILKFNSDDRKFFFWMQESNADNDSQLCSSVNDYLNRPLELLGEE 126

Query: 131 ELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGP 190
           E D S+PL+VSEDMVEDD+SSRA NLVVPN G +A SDVT SSGPVKL DLQRI SNIGP
Sbjct: 127 EPDVSLPLEVSEDMVEDDISSRAANLVVPNFGVDATSDVT-SSGPVKLADLQRILSNIGP 185

Query: 191 AG 192
           A 
Sbjct: 186 AA 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073444|ref|XP_002304096.1| predicted protein [Populus trichocarpa] gi|222841528|gb|EEE79075.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 144/201 (71%), Positives = 162/201 (80%), Gaps = 11/201 (5%)

Query: 1   MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRN 60
           MGSSST    AMQEI+LEFRAGKM F GKK VPDSRKGLVRI RG+ GL+HFQWLDR  N
Sbjct: 1   MGSSSTVDISAMQEIMLEFRAGKMVFVGKKFVPDSRKGLVRIGRGDEGLLHFQWLDRNLN 60

Query: 61  VVED-------DQIV--FPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQ 111
            VED       D+I+  F  +AVFEKVNQA GRVYILKFNTDDRKFF+W+QEPKA++DSQ
Sbjct: 61  AVEDLFLDALIDRIILFFSEDAVFEKVNQALGRVYILKFNTDDRKFFIWVQEPKAKDDSQ 120

Query: 112 LCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTS 171
           LC+SVNY+INRP  FV+EEE DAS P QV EDM+ED++SSR GN VVP+LG E +SDV S
Sbjct: 121 LCSSVNYYINRP--FVDEEEPDASTPFQVFEDMLEDNISSRTGNSVVPDLGAEVMSDVNS 178

Query: 172 SSGPVKLEDLQRIFSNIGPAG 192
           SS PVKLEDLQRI SNIG  G
Sbjct: 179 SSEPVKLEDLQRILSNIGAGG 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401185|ref|NP_565626.1| regulatory particle non-ATPase 13 [Arabidopsis thaliana] gi|79323128|ref|NP_001031424.1| regulatory particle non-ATPase 13 [Arabidopsis thaliana] gi|79323137|ref|NP_001031425.1| regulatory particle non-ATPase 13 [Arabidopsis thaliana] gi|20196943|gb|AAC14506.2| expressed protein [Arabidopsis thaliana] gi|330252768|gb|AEC07862.1| regulatory particle non-ATPase 13 [Arabidopsis thaliana] gi|330252769|gb|AEC07863.1| regulatory particle non-ATPase 13 [Arabidopsis thaliana] gi|330252770|gb|AEC07864.1| regulatory particle non-ATPase 13 [Arabidopsis thaliana]

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 133/192 (69%), Positives = 159/192 (82%), Gaps = 4/192 (2%)

Query: 4   SSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVE 63
           SS+ A P MQEI+LEFRAGKM+  G +VVPD+RKGLVRIARG+ GLIHFQWLDR +N VE
Sbjct: 2   SSSEAFPVMQEIMLEFRAGKMSLQGTRVVPDARKGLVRIARGDEGLIHFQWLDRNQNTVE 61

Query: 64  DDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
           DDQIVFP EA+FEKVNQ+S RVYILKFN+DDRK F WMQEP+AE D++LC+SVN ++N+P
Sbjct: 62  DDQIVFPDEALFEKVNQSSDRVYILKFNSDDRKLFFWMQEPRAEGDAELCSSVNQYLNQP 121

Query: 124 LVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQR 183
           L F  EE L A++  ++ EDM ED+ SSRAGNLVVPNL  E +SDVTSSSGPVKL DLQR
Sbjct: 122 LEFPGEEGLAAAITEEL-EDMAEDNTSSRAGNLVVPNLSSE-VSDVTSSSGPVKLADLQR 179

Query: 184 IFSNI--GPAGL 193
           I +N+  GP G+
Sbjct: 180 ILNNLSGGPVGI 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2066200	300	RPN13 "AT2G26590" [Arabidopsis	0.886	0.623	0.696	1.1e-66
UNIPROTKB|Q16186	407	ADRM1 "Proteasomal ubiquitin r	0.535	0.277	0.508	8.8e-32
UNIPROTKB|F1NEQ9	409	ADRM1 "Proteasomal ubiquitin r	0.511	0.264	0.513	8.8e-32
UNIPROTKB|F1P4I9	405	ADRM1 "Proteasomal ubiquitin r	0.511	0.266	0.513	8.8e-32
UNIPROTKB|Q98SH3	406	ADRM1 "Proteasomal ubiquitin r	0.511	0.266	0.513	8.8e-32
UNIPROTKB|A1L5A6	407	ADRM1 "Proteasomal ubiquitin r	0.511	0.265	0.522	1.4e-31
UNIPROTKB|Q6P877	404	adrm1 "Proteasomal ubiquitin r	0.511	0.267	0.513	3.8e-31
MGI|MGI:1929289	407	Adrm1 "adhesion regulating mol	0.511	0.265	0.522	3.8e-31
RGD|69248	407	Adrm1 "adhesion regulating mol	0.511	0.265	0.522	3.8e-31
UNIPROTKB|E2RDP4	406	ADRM1 "Uncharacterized protein	0.511	0.266	0.513	6.1e-31

TAIR|locus:2066200 RPN13 "AT2G26590" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 133/191 (69%), Positives = 158/191 (82%)

Query:     4 SSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVE 63
             SS+ A P MQEI+LEFRAGKM+  G +VVPD+RKGLVRIARG+ GLIHFQWLDR +N VE
Sbjct:     2 SSSEAFPVMQEIMLEFRAGKMSLQGTRVVPDARKGLVRIARGDEGLIHFQWLDRNQNTVE 61

Query:    64 DDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             DDQIVFP EA+FEKVNQ+S RVYILKFN+DDRK F WMQEP+AE D++LC+SVN ++N+P
Sbjct:    62 DDQIVFPDEALFEKVNQSSDRVYILKFNSDDRKLFFWMQEPRAEGDAELCSSVNQYLNQP 121

Query:   124 LVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQR 183
             L F  EE L A++  ++ EDM ED+ SSRAGNLVVPNL  E +SDVTSSSGPVKL DLQR
Sbjct:   122 LEFPGEEGLAAAITEEL-EDMAEDNTSSRAGNLVVPNLSSE-VSDVTSSSGPVKLADLQR 179

Query:   184 IFSNI--GPAG 192
             I +N+  GP G
Sbjct:   180 ILNNLSGGPVG 190

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007155 "cell adhesion" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

UNIPROTKB|Q16186 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Homo sapiens (taxid:9606)]

 Score = 310 (114.2 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 58/114 (50%), Positives = 75/114 (65%)

Query:    11 AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFP 70
             A  + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP
Sbjct:    18 ASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFP 77

Query:    71 HEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
              +  F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:    78 DDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131

GO:0000502 "proteasome complex" evidence=IDA

GO:0061133 "endopeptidase activator activity" evidence=IDA

GO:0043248 "proteasome assembly" evidence=IDA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IMP

GO:0002020 "protease binding" evidence=IPI

GO:0070628 "proteasome binding" evidence=IDA

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010950 "positive regulation of endopeptidase activity" evidence=IDA

UNIPROTKB|F1NEQ9 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Gallus gallus (taxid:9031)]

 Score = 304 (112.1 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 56/109 (51%), Positives = 73/109 (66%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    26 LVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEF 85

Query:    76 EKVNQAS-GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V Q + GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:    86 KRVPQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 134

GO:0000502 "proteasome complex" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

UNIPROTKB|F1P4I9 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Gallus gallus (taxid:9031)]

 Score = 304 (112.1 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 56/109 (51%), Positives = 73/109 (66%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    22 LVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEF 81

Query:    76 EKVNQAS-GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V Q + GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:    82 KRVPQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 130

GO:0000502 "proteasome complex" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

UNIPROTKB|Q98SH3 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Gallus gallus (taxid:9031)]

 Score = 304 (112.1 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 56/109 (51%), Positives = 73/109 (66%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    23 LVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEF 82

Query:    76 EKVNQAS-GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V Q + GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:    83 KRVPQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 131

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

GO:0000502 "proteasome complex" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

UNIPROTKB|A1L5A6 ADRM1 "Proteasomal ubiquitin receptor ADRM1" [Bos taurus (taxid:9913)]

 Score = 307 (113.1 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
 Identities = 57/109 (52%), Positives = 73/109 (66%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    23 LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEF 82

Query:    76 EKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:    83 KRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0000502 "proteasome complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

UNIPROTKB|Q6P877 adrm1 "Proteasomal ubiquitin receptor ADRM1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 310 (114.2 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 56/109 (51%), Positives = 74/109 (67%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    22 LVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDCEF 81

Query:    76 EKVNQAS-GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V+Q + GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:    82 KRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKVNEYLNNP 130

GO:0000502 "proteasome complex" evidence=ISS

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

MGI|MGI:1929289 Adrm1 "adhesion regulating molecule 1" [Mus musculus (taxid:10090)]

 Score = 305 (112.4 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 57/109 (52%), Positives = 72/109 (66%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    23 LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEF 82

Query:    76 EKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN  +N P
Sbjct:    83 KRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131

GO:0000502 "proteasome complex" evidence=ISO

GO:0001541 "ovarian follicle development" evidence=IMP

GO:0002020 "protease binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=ISO

GO:0007286 "spermatid development" evidence=IMP

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISO

GO:0033081 "regulation of T cell differentiation in thymus" evidence=IMP

GO:0042699 "follicle-stimulating hormone signaling pathway" evidence=IMP

GO:0043248 "proteasome assembly" evidence=ISO

GO:0048477 "oogenesis" evidence=IMP

GO:0048538 "thymus development" evidence=IMP

GO:0060009 "Sertoli cell development" evidence=IMP

GO:0060399 "positive regulation of growth hormone receptor signaling pathway" evidence=IMP

GO:0060612 "adipose tissue development" evidence=IMP

GO:0061133 "endopeptidase activator activity" evidence=ISO

GO:0070628 "proteasome binding" evidence=ISO

GO:0072520 "seminiferous tubule development" evidence=IMP

RGD|69248 Adrm1 "adhesion regulating molecule 1" [Rattus norvegicus (taxid:10116)]

 Score = 305 (112.4 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 57/109 (52%), Positives = 72/109 (66%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    23 LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEF 82

Query:    76 EKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN  +N P
Sbjct:    83 KRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131

GO:0000502 "proteasome complex" evidence=ISO;ISS

GO:0001541 "ovarian follicle development" evidence=ISO

GO:0002020 "protease binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA;ISO

GO:0007286 "spermatid development" evidence=ISO

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISO

GO:0033081 "regulation of T cell differentiation in thymus" evidence=ISO

GO:0042699 "follicle-stimulating hormone signaling pathway" evidence=ISO

GO:0043248 "proteasome assembly" evidence=ISO;ISS

GO:0048477 "oogenesis" evidence=ISO

GO:0048538 "thymus development" evidence=ISO

GO:0060009 "Sertoli cell development" evidence=ISO

GO:0060399 "positive regulation of growth hormone receptor signaling pathway" evidence=ISO

GO:0060612 "adipose tissue development" evidence=ISO

GO:0061133 "endopeptidase activator activity" evidence=ISO;ISS

GO:0070628 "proteasome binding" evidence=IEA;ISO

GO:0072520 "seminiferous tubule development" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E2RDP4 ADRM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 303 (111.7 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
 Identities = 56/109 (51%), Positives = 73/109 (66%)

Query:    16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
             L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct:    23 LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEF 82

Query:    76 EKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
             ++V Q  SGRVY+L+F    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:    83 KRVPQCPSGRVYVLQFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131

GO:0070628 "proteasome binding" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
cd13314	105	cd13314, PH_Rpn13, Regulatory Particle Non-ATPase	9e-56
pfam04683	84	pfam04683, Proteasom_Rpn13, Proteasome complex sub	7e-40

>gnl|CDD|241468 cd13314, PH_Rpn13, Regulatory Particle Non-ATPase 13 Pleckstrin homology-like domain

 Score =  172 bits (437), Expect = 9e-56
 Identities = 56/105 (53%), Positives = 73/105 (69%), Gaps = 1/105 (0%)

Query: 17  LEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFE 76
           +EF+AGKMT  G  V PD RKGLV + +G+ GLIHF W DRT   VEDD I+FP +A F+
Sbjct: 1   VEFKAGKMTLKGTTVTPDPRKGLVYLYQGDDGLIHFCWKDRTTGAVEDDLIIFPDDAEFK 60

Query: 77  KVNQ-ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFI 120
           KV Q  +GRVY+LKF +  +K F WMQEP  ++D ++C  VN  +
Sbjct: 61  KVPQCTTGRVYVLKFKSSSQKHFFWMQEPSTDKDEEICKKVNELL 105

Targeted protein degradation is performed to a great extent by the ubiquitin-proteasome pathway, in which substrate proteins are marked by covalently attached ubiquitin chains that mediate recognition by the proteasome. Rpn13(also called ADRM1/ARM1) is one of the two major ubiquitin receptors of the proteasome, the other being S5a/Rpn10 which is not essential for ubiquitin-mediated protein degradation in budding yeast2. S5a has two ubiquitin interacting motifs (UIMs) that bind simultaneously to ubiquitin moieties to increase affinity while Rpn13 binds ubiquitin with a single, high affinity surface within its N-terminal PH domain. Rpn13 also binds and activates deubiquitinating enzyme Uch37, one of the proteasome's three deubiquitinating enzymes. Recently it was discovered that the ubiquitin-binding domain (BD) and Uch37 BD of human (h) Rpn13 pack against each other when it is not incorporated into the proteasome reducing hRpn13's affinity for ubiquitin. However when hRpn13 binds to hRpn2/S1 this abrogates its interdomain interactions, thus activating hRpn13 for ubiquitin binding. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|218211 pfam04683, Proteasom_Rpn13, Proteasome complex subunit Rpn13 ubiquitin receptor

 Score =  131 bits (331), Expect = 7e-40
 Identities = 45/84 (53%), Positives = 59/84 (70%), Gaps = 1/84 (1%)

Query: 22  GKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQA 81
           GKM  DGK V PD RKGL+ + + + GL+HFQW  R    VEDD I+FP EA F++V Q 
Sbjct: 1   GKMNLDGKTVTPDPRKGLLYLYKSDDGLLHFQWKPRDTGEVEDDLILFPGEATFKRVPQC 60

Query: 82  -SGRVYILKFNTDDRKFFLWMQEP 104
            +GRVY+LKF +  +++F WMQEP
Sbjct: 61  TTGRVYVLKFKSSGQRYFFWMQEP 84

This family was thought originally to be involved in cell-adhesion, but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37. Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG3037	330	consensus Cell membrane glycoprotein [General func	100.0
PF04683	85	Proteasom_Rpn13: Proteasome complex subunit Rpn13	100.0

>KOG3037 consensus Cell membrane glycoprotein [General function prediction only]

Probab=100.00  E-value=5.8e-52  Score=372.75  Aligned_cols=184  Identities=43%  Similarity=0.705  Sum_probs=146.2

Q ss_pred             CCcCCCCCceeEEEeceeeEecC--CcEEecCCCcEEEEEeCCCCceEEEEeeCCCCCcccceEeeCCceEEEEecc-CC
Q 028289            6 TAASPAMQEILLEFRAGKMTFDG--KKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-AS   82 (211)
Q Consensus         6 ~~~~~~~~~~LieFkAGKm~~~g--~~V~Pd~rKG~l~l~~~edgl~hf~W~~R~t~~vEddlIlfPgea~F~kV~~-~t   82 (211)
                      .+.++.++.+||+||||||.+.|  ++|+||+|||+|||.+++|||+||||++|+++.||||+||||+|++|+||++ ||
T Consensus         2 ~~ss~s~~~~lVeFkAGkm~l~~gtk~v~pDprKGli~i~~sddgliHF~WkdR~~g~VEdDlIifPde~eF~kV~qC~t   81 (330)
T KOG3037|consen    2 TESSNSSSSTLVEFKAGKMRLVGGTKLVTPDPRKGLIYIKRSDDGLIHFCWKDRESGNVEDDLIVFPDEAEFKKVDQCKT   81 (330)
T ss_pred             ccccccccceEEEEecceEEecCCcceeecccccceEEEeeCCCceEEEEecccCCCCcccceEEccCceeEEECCCCCC
Confidence            45678999999999999999998  8999999999999999999999999999999999999999999999999999 99


Q ss_pred             CeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcCCcc---------cccccccccC-----------------C
Q 028289           83 GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLV---------FVNEEELDAS-----------------V  136 (211)
Q Consensus        83 GRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~p~~---------~~~~~~~~~~-----------------~  136 (211)
                      ||||+|||+|+.|+|||||||+++++|+++|++||++||+|+-         ..+....+..                 .
T Consensus        82 GRVY~LKFkSs~~r~FFWMQE~~~d~D~e~c~rvNelln~p~~~~~~~~~~~~~~l~~~~~s~~~~lfgg~~~~~~L~~~  161 (330)
T KOG3037|consen   82 GRVYVLKFKSSDQRLFFWMQEPSDDNDKELCSRVNELLNKPPTSRPLGASGSGSMLNDDSKSQLMQLFGGSGMNDGLEAL  161 (330)
T ss_pred             CcEEEEEecCCCeeEEEEeecCCCCcCHHHHHHHHHHHcCCCccccccccccccccccccHHHHHhhcCcccccchhhhh
Confidence            9999999999999999999999999999999999999999820         0000000000                 0


Q ss_pred             cccccccccccccccCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHhcCC
Q 028289          137 PLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGP  190 (211)
Q Consensus       137 ~~~~~~~~~~~~~ss~~~~~~~p~~~~~~~~~~~s~~~~~~l~~lq~iLs~~~~  190 (211)
                      ..+....+.+...++.+++...+++.+.. +...+++.|...++.+++++++.+
T Consensus       162 ~~e~l~~~~~s~~~s~~~~~~~~t~es~~-~~~~~~~~~~~~~~~~~~~~~~~~  214 (330)
T KOG3037|consen  162 TVEQLNSLAESNESSLPGNSVPQTPESSV-SGPESPSEPNKEEDVSNSLSTLSP  214 (330)
T ss_pred             hHhhhcccccCccccccccccccCccccc-cCCCCCCccccchhhcccccCCch
Confidence            01111222222333445555556655543 333456899999999999998754

>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor

Probab=100.00  E-value=8.5e-40  Score=246.34  Aligned_cols=83  Identities=55%  Similarity=1.058  Sum_probs=71.8

Q ss_pred             eeeEecCCcEEecCCCcEEEEEeCCCCceEEEEeeCCC-CCcccceEeeCCceEEEEecc-CCCeEEEEEEcCCCceeEE
Q 028289           22 GKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTR-NVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFL   99 (211)
Q Consensus        22 GKm~~~g~~V~Pd~rKG~l~l~~~edgl~hf~W~~R~t-~~vEddlIlfPgea~F~kV~~-~tGRVyvLkF~ss~~k~FF   99 (211)
                      |||+++|++|+||+|||+|+|++++|+|+||||++|++ +.+|+|+||||||++|++|++ +|||||+|||++|+++|||
T Consensus         1 Gk~~~~~~~V~pd~~KG~l~l~~~~d~l~~f~W~~r~~~~~~e~d~il~pg~~~f~~V~~c~tGRVy~LkF~ss~~~~fF   80 (85)
T PF04683_consen    1 GKMDLDGKIVTPDPRKGLLYLYKSEDGLLHFCWKPRDTTGEVEDDLILFPGDATFKKVPQCKTGRVYVLKFKSSDQRYFF   80 (85)
T ss_dssp             EEEEEETTEEEE-SS-EEEEEEETTTS-EEEEEEETST---EEEEEEE-TTTEEEEE-TTSSTS-EEEEEETTTT-EEEE
T ss_pred             CcEEEeCCEEeECCCCEEEEEEECCCCeEEEEEEEcCcCCCcccceecCCCCeEEEECCcCCCCeEEEEEECCCCccEEE
Confidence            99999999999999999999999999999999999999 999999999999999999999 9999999999999999999


Q ss_pred             EccCC
Q 028289          100 WMQEP  104 (211)
Q Consensus       100 WmQe~  104 (211)
                      |||||
T Consensus        81 WmQe~   85 (85)
T PF04683_consen   81 WMQEP   85 (85)
T ss_dssp             EE-SS
T ss_pred             EecCC
Confidence            99996

The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
2kr0_A	411	A Proteasome Protein Length = 411		5e-31
2r2y_A	153	Crystal Structure Of The Proteasomal Rpn13 Pru-Doma		1e-29
2z59_A	109	Complex Structures Of Mouse Rpn13 (22-130aa) And Ub		2e-28
4b4t_X	156	Near-Atomic Resolution Structural Model Of The Yeas		6e-04

>pdb|2KR0|A Chain A, A Proteasome Protein Length = 411

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 11  AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFP 70
           A  + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP
Sbjct: 22  ASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFP 81
Query: 71  HEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
            +  F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct: 82  DDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 135

>pdb|2Z59|A Chain A, Complex Structures Of Mouse Rpn13 (22-130aa) And Ubiquitin Length = 109

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 16  LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
           L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F
Sbjct: 2   LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEF 61
Query: 76  EKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFIN 121
           ++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN  +N
Sbjct: 62  KRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLN 108

>pdb|4B4T|X Chain X, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 156

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 11  AMQEILLEFRAGKMTF--DGKKVVPDSRKGLVRIARGEH---GLIHFQWLDRTRNVVED- 64
           +M   +++FRAG   +  D +   P   +G + I   E    G   F+W    + V  + 
Sbjct: 2   SMSSTVIKFRAGVCEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGREL 61
Query: 65  ---DQIVFPHEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQE 103
                I+ P E ++  +  + SGR++ L F++++R +F W+QE
Sbjct: 62  DPISLILIPGETMWVPIKSSKSGRIFALVFSSNER-YFFWLQE 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
2r2y_A	153	Protein ADRM1; proteasome, ubiquitin, PH-domain, 1	2e-49
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	2e-46
2z4d_A	96	26S proteasome regulatory subunit RPN13; PH domain	3e-32
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens} Length = 411

 Score =  157 bits (396), Expect = 2e-46
 Identities = 73/195 (37%), Positives = 100/195 (51%), Gaps = 5/195 (2%)

Query: 2   GSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNV 61
            S    +  A  + L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   
Sbjct: 13  PSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGN 72

Query: 62  VEDDQIVFPHEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFI 120
           VEDD I+FP +  F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN ++
Sbjct: 73  VEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYL 132

Query: 121 NRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNL---VVPNLGGEAISDVTSSSGPVK 177
           N P +         S   ++S    E  + S  GN+    +  L G A        G + 
Sbjct: 133 NNPPMPGALGA-SGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALT 191

Query: 178 LEDLQRIFSNIGPAG 192
              L  +  + GP G
Sbjct: 192 GPGLASLLGSSGPPG 206

>2z4d_A 26S proteasome regulatory subunit RPN13; PH domain, nuclear protein; NMR {Saccharomyces cerevisiae} Length = 96

 Score =  111 bits (279), Expect = 3e-32
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 16  LLEFRAGKMTFD--GKKVVPDSRKGLVRIARGE---HGLIHFQWLDRT----RNVVEDDQ 66
           +++FRAG   ++   +   P   +G + I   E    G   F+W        R +     
Sbjct: 2   VIKFRAGVCEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGRELDPISL 61

Query: 67  IVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFLWM 101
           I+ P E ++  +    SGR++ L F++++R FF W+
Sbjct: 62  ILIPGETMWVPIKSSKSGRIFALVFSSNERYFF-WL 96

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 9e-05
 Identities = 28/225 (12%), Positives = 61/225 (27%), Gaps = 71/225 (31%)

Query: 17  LEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVV---EDDQIV-FPHE 72
           ++F  G+  +  K ++       V               D  ++++   E D I+     
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVD------NFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 73  A-----VFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQ--------------LC 113
                 +F  +      +         R  + ++  P   E  Q              L 
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 114 NSVN----YFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGG------ 163
           N       Y ++R       +       L++ + ++E      A N+++  + G      
Sbjct: 121 NDNQVFAKYNVSRL------QPY-----LKLRQALLELR---PAKNVLIDGVLGSGKTWV 166

Query: 164 --EAISD---VTSSSGPV-------------KLEDLQRIFSNIGP 190
             +              +              LE LQ++   I P
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	100.0
2r2y_A	153	Protein ADRM1; proteasome, ubiquitin, PH-domain, 1	100.0
4b4t_X	156	26S proteasome regulatory subunit RPN13; hydrolase	100.0

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}

Probab=100.00  E-value=3.9e-50  Score=372.45  Aligned_cols=115  Identities=50%  Similarity=0.957  Sum_probs=111.3

Q ss_pred             CCCceeEEEeceeeEecCCcEEecCCCcEEEEEeCCCCceEEEEeeCCCCCcccceEeeCCceEEEEecc-CCCeEEEEE
Q 028289           11 AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILK   89 (211)
Q Consensus        11 ~~~~~LieFkAGKm~~~g~~V~Pd~rKG~l~l~~~edgl~hf~W~~R~t~~vEddlIlfPgea~F~kV~~-~tGRVyvLk   89 (211)
                      .+.++||+||||||+++|++|+||+|||+|||++.+|+|+||||++|+++.+|||+||||+|++|+||++ +|||||+||
T Consensus        22 s~~~~lveFkAGk~~~~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~~~~~Eddlii~P~d~~f~~V~~c~tGRVyvLk  101 (411)
T 2kr0_A           22 ASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLK  101 (411)
T ss_dssp             SCCSCSEEECEEEEEESSSSEEECCSCEEEEEEECTTSCEEEEEEESSSCCEEEEEEECTTSEEEEECTTCSSSCEEEEE
T ss_pred             CCCceeEEEeCceEEecCCEEeecCCCcEEEEEeCCCCcEEEEEecCCCCCcccceEEcCCceEEEECCCCCCCeEEEEE
Confidence            5569999999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             EcCCCceeEEEccCCCchhhHHHHHHHHHHhcCCcc
Q 028289           90 FNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLV  125 (211)
Q Consensus        90 F~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~p~~  125 (211)
                      |+++++||||||||++.++|+++|++||++|+++++
T Consensus       102 F~ss~~r~fFWmQe~~~~~D~~~~~~vN~ll~~~~~  137 (411)
T 2kr0_A          102 FKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPM  137 (411)
T ss_dssp             ETTTCCEEEEEECCSCGGGHHHHHHHHHHHHHSCSC
T ss_pred             ecCCCceeEEEecCCCcccHHHHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999998753

>4b4t_X 26S proteasome regulatory subunit RPN13; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} PDB: 2z4d_A

Probab=100.00  E-value=8.5e-47  Score=311.39  Aligned_cols=112  Identities=25%  Similarity=0.567  Sum_probs=99.5

Q ss_pred             CCceeEEEeceeeEecC--CcEEecCCCcEEEEEeCCC---CceEEEEeeCCCCCc----ccceEeeCCceEEEEecc-C
Q 028289           12 MQEILLEFRAGKMTFDG--KKVVPDSRKGLVRIARGEH---GLIHFQWLDRTRNVV----EDDQIVFPHEAVFEKVNQ-A   81 (211)
Q Consensus        12 ~~~~LieFkAGKm~~~g--~~V~Pd~rKG~l~l~~~ed---gl~hf~W~~R~t~~v----EddlIlfPgea~F~kV~~-~   81 (211)
                      +..+||+||||||.+++  ++|+|++|||+|||++++|   ||+||||++|+++..    |+|+||||||++|++|++ +
T Consensus         3 ~s~~li~FkAGk~~~~~~tk~v~Pd~rKG~i~l~~~~d~~~~l~hf~W~~R~~~~~~~~~~~dlii~P~d~~f~~v~~c~   82 (156)
T 4b4t_X            3 MSSTVIKFRAGVCEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGRELDPISLILIPGETMWVPIKSSK   82 (156)
T ss_dssp             ----CEEECEEEEEEETTTTEEEECSCCCBEEEESCSSSSSCCCEEECBSCSCCSSCCCCCCEECCCTTTSEEECCSSCS
T ss_pred             CCceeEEEeCceEEEcCCccEEeecCCceEEEEEECCCCCcceEEEEEecCCCCCcCCCCccceEEcCCceEEEEcCCCC
Confidence            45689999999999986  6899999999999999877   699999999997643    459999999999999999 9


Q ss_pred             CCeEEEEEEcCCCceeEEEccCCCc---------hhhHHHHHHHHHHhcCCc
Q 028289           82 SGRVYILKFNTDDRKFFLWMQEPKA---------EEDSQLCNSVNYFINRPL  124 (211)
Q Consensus        82 tGRVyvLkF~ss~~k~FFWmQe~~~---------~~D~~~~~~vN~~i~~p~  124 (211)
                      |||||+||| +|+|||||||||+++         ++|+++|++||++||++.
T Consensus        83 tGRVyvLkF-ss~~r~fFWmQe~~~~~~~~~~~s~kD~~~~~~vn~lL~~~~  133 (156)
T 4b4t_X           83 SGRIFALVF-SSNERYFFWLQEKNSGNLPLNELSAKDKEIYNKMIGVLNNSS  133 (156)
T ss_dssp             SCCEEEEEC-SSSCCEEEEECSSCSSSSSSCCCSSSSHHHHHHHHHHHHCC-
T ss_pred             CcEEEEEEe-cCCCcEEEEeecCCccCCcccccchhHHHHHHHHHHHhcCCc
Confidence            999999999 678999999999986         679999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00