Citrus Sinensis ID: 028296

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Secondary Structure (PSIPRED)
ccccccccEEcccccccccccccccccccccHHHHHHcccccEEEEEEEccccEEEcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccHHcccccccccEEEEEEccc
Coil and Loop (DISEMBL)
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTakaheyispstttKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKenkslqdgfiinakeedphyeyelvdngehcdsdfgfqnegpgifalrlqpn
Flexible Loop (DISEMBL)
mgrgkmemkrienatnrqvtfskrrnglfKKARELTILCDAKVSILICSSTAkaheyispstttkqLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINtfkrkvrgvqkenkslqdgfiinAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Low Complexity Region (SEG)
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Disordered region (IsUnstruct)
************************RNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQK**KSLQDGFIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFAL*****
Disordered Region (DISOPRED)
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR*************NLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFII**********************************ALRLQP*
Disordered Region (DISEMBL)
*********RIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Disordered Region (DISPRO)
****KMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
P23706	227	Floral homeotic protein D	N/A	no	0.981	0.911	0.587	1e-62
Q07472	231	Floral homeotic protein P	N/A	no	0.962	0.878	0.596	2e-61
P35632	232	Floral homeotic protein A	yes	no	0.981	0.892	0.511	7e-52
Q944S9	224	MADS-box transcription fa	yes	no	0.976	0.919	0.445	2e-43
Q42498	214	MADS-box protein CMB2 OS=	N/A	no	0.777	0.766	0.469	1e-37
Q07474	212	Floral homeotic protein P	N/A	no	0.952	0.948	0.396	3e-33
Q03378	215	Floral homeotic protein G	N/A	no	0.957	0.939	0.373	2e-30
Q9XGJ4	237	MADS-box protein GGM13 OS	N/A	no	0.985	0.877	0.363	5e-29
Q8VWM8	259	MADS-box protein ZMM17 OS	N/A	no	0.753	0.613	0.405	2e-28
Q6H711	260	MADS-box transcription fa	no	no	0.753	0.611	0.405	9e-28

>sp|P23706|DEFA_ANTMA Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/211 (58%), Positives = 160/211 (75%), Gaps = 4/211 (1%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA EL++LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           +T TKQL D YQK + VDLWSSHYEKM E+L  + +VNR L+++IRQRMGESLNDL  E+
Sbjct: 61  TTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQ 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
           +  L +D+ + LK+I E K +V++ QI+T K+KVR V++ +++L   F  +A+ EDPH  
Sbjct: 121 IVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEF--DARREDPH-- 176

Query: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
           + LVDN    +S  GF N GP I ALRL  N
Sbjct: 177 FGLVDNEGDYNSVLGFPNGGPRIIALRLPTN 207

Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Antirrhinum majus (taxid: 4151)

>sp|Q07472|MADS1_PETHY Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1

 Score =  235 bits (599), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/208 (59%), Positives = 158/208 (75%), Gaps = 5/208 (2%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HE+ISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S TTKQL DLYQKT+ VDLW+SHYEKM E L  +++VNR L+K+IRQRMGESLNDL  E+
Sbjct: 61  SITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQ 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
           L  L +++ + LK+I E K +V+  QI TFK+KVR V++ +++L   F  +A++EDP   
Sbjct: 121 LEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNLLLEF--DARQEDP--- 175

Query: 181 YELVDNGEHCDSDFGFQNEGPGIFALRL 208
           Y LV+     +S  GF N G  I ALRL
Sbjct: 176 YGLVEQEGDYNSVLGFPNGGHRILALRL 203

Transcription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals.

Petunia hybrida (taxid: 4102)

>sp|P35632|AP3_ARATH Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1

 Score =  203 bits (516), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 108/211 (51%), Positives = 146/211 (69%), Gaps = 4/211 (1%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDA+VSI++ SS+ K HEYISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           +TTTK+++DLYQ    VD+W++ YE+M E    + + NR L+ QI+QR+GE L++L ++E
Sbjct: 61  NTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
           L  LE ++ +  K++ E K + L  QI T K+K +  Q   K+L     + A  EDPH  
Sbjct: 121 LRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRA--EDPH-- 176

Query: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
           Y LVDNG   DS  G+Q EG   +ALR   N
Sbjct: 177 YGLVDNGGDYDSVLGYQIEGSRAYALRFHQN 207

Probable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms an heterodimer with PISTILLATA that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q944S9|MAD16_ORYSJ MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/211 (44%), Positives = 131/211 (62%), Gaps = 5/211 (2%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIENATNRQVT+SKRR G+ KKARELT+LCDA+V+I++ SST K HE+ SP
Sbjct: 1   MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           ST  K + D YQ+ +   LW   YE M   L  ++ +NR L+ +IRQRMGE L+ L  +E
Sbjct: 61  STDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
           L GLEQ++   LK +   K  V+  Q  T+K+KV+   +  ++LQ    +    E+P + 
Sbjct: 121 LRGLEQNVDAALKEVRHRKYHVITTQTETYKKKVKHSYEAYETLQQELGL---REEPAFG 177

Query: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
           +  VDN                +FA R+ P+
Sbjct: 178 F--VDNTGGGWDGGAGAGAAADMFAFRVVPS 206

Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as an heterodimer with MADS4.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q42498|CMB2_DIACA MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1

 Score =  155 bits (393), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 114/164 (69%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+++IEN TNRQVTFSKRRNG+ KKA+ELT+LCDAKVS+L+ SST K H Y+SP
Sbjct: 1   MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             + K++ D YQK   VDLW   +E+M E    V ++N +L+++I +RMG  L  LTL E
Sbjct: 61  GVSLKKMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSL 164
           L+ L+Q++ + +  I   K   +  Q  T ++K++ +++ +  L
Sbjct: 121 LSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDL 164

Dianthus caryophyllus (taxid: 3570)

>sp|Q07474|MADS2_PETHY Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/212 (39%), Positives = 134/212 (63%), Gaps = 11/212 (5%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIEN++NRQVT+SKRRNG+ KKA+E+T+LCDAKVS++I  ++ K HEY SP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STT   +LD YQKT    LW + +E +   +  +++ N  ++ ++R   GE +N L  +E
Sbjct: 61  STTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPH-Y 179
           L  LE+ + +GL  I   + ++L       ++  + +++E+K LQ  + ++ KE      
Sbjct: 121 LMVLEEGLTNGLSSISAKQSEIL----RMVRKNDQILEEEHKQLQ--YALHQKEMAAMGG 174

Query: 180 EYELVDNGEHC-DSDFGFQNEGPGIFALRLQP 210
              +++   H  D D+ +Q + P  FALR+QP
Sbjct: 175 NMRMIEEVYHQRDRDYEYQ-QMP--FALRVQP 203

Transcription factor involved in the genetic control of flower development.

Petunia hybrida (taxid: 4102)

>sp|Q03378|GLOB_ANTMA Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 12/214 (5%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIEN++NRQVT+SKRRNG+ KKA+E+++LCDA VS++I +S+ K HE+ SP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STT   +LD Y K     LW   +E +   +  V++ N  ++ ++R   GE +  L  +E
Sbjct: 61  STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPH-- 178
           L  LE  + +G   + + K     R +   ++    V++EN+SLQ  F +     DP   
Sbjct: 121 LMVLEDALENGTSAL-KNKQMEFVRMM---RKHNEMVEEENQSLQ--FKLRQMHLDPMND 174

Query: 179 --YEYELVDNGEHCDSDFGFQNEGPGIFALRLQP 210
              E + V +  H  +   ++ + P  FA R+QP
Sbjct: 175 NVMESQAVYDHHHHQNIADYEAQMP--FAFRVQP 206

Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).

Antirrhinum majus (taxid: 4151)

>sp|Q9XGJ4|GGM13_GNEGN MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1

 Score =  127 bits (319), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 123/220 (55%), Gaps = 12/220 (5%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIEN TNRQVTFSKRR GL KKA EL++LCDA++ ++I SS+ K  EY S 
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSA 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S++ K++++ YQK     +     + +   +  ++  N  L+  IR+ MGE L  LT+ E
Sbjct: 61  SSSMKKIIERYQKVSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSL------QDGFIINAKE 174
           L  L Q +      +   K+Q++ +Q+   +RK R ++ +N  L      Q   +   +E
Sbjct: 121 LHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAEQQAAVEGVQE 180

Query: 175 EDPHYEYELV----DNGEHCDSDFGFQNEGPGIFALRLQP 210
             P  E+ +     DN     ++ G  + G  + A RLQP
Sbjct: 181 --PLLEFGVFCPPPDNKTAAAANAGPLHLGHHLPAFRLQP 218

Probable transcription factor.

Gnetum gnemon (taxid: 3382)

>sp|Q8VWM8|M17_MAIZE MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 111/170 (65%), Gaps = 11/170 (6%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIEN+TNRQVTFSKRR GL KKA EL +LCDA+V ++I SST K  EY SP
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRI------LKKQIRQRMGESLN 114
           + + ++L++ YQ        +SH+E++  +   + ++ R+      L+  IR+  G+ L+
Sbjct: 61  ACSLRELIEQYQHA-----TNSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLS 115

Query: 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSL 164
            LTL++++ LEQ +   +  +   K Q+L +Q++  +RK + ++ +N  L
Sbjct: 116 SLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFL 165

Probable transcription factor.

Zea mays (taxid: 4577)

>sp|Q6H711|MAD29_ORYSJ MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1

 Score =  123 bits (308), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 108/170 (63%), Gaps = 11/170 (6%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIENATNRQVTFSKRR GL KKA EL +LCDA+V ++I SST K  EY SP
Sbjct: 1   MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRI------LKKQIRQRMGESLN 114
           + + ++L++ YQ      + ++H+E++  +     ++ R+      L   IR+  G+ L+
Sbjct: 61  TCSLRELIEHYQT-----VTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLS 115

Query: 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSL 164
           +LTL ++  LEQ +   +  +   K Q+L +Q++  +RK   ++ +N  L
Sbjct: 116 NLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFL 165

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
343887324	211	MADS-box protein (CitMADS8) [Citrus unsh	1.0	1.0	1.0	1e-120
116078103	211	MADS-box protein [Citrus unshiu]	1.0	1.0	0.995	1e-119
225458107	226	PREDICTED: floral homeotic protein DEFIC	0.981	0.915	0.601	7e-64
302584056	226	MADS domain transcription factor [Camell	0.981	0.915	0.601	3e-63
126023786	226	flowering-related B-class MADS-box prote	0.981	0.915	0.597	3e-63
315418854	226	AP3 [Actinidia eriantha]	0.981	0.915	0.597	8e-63
262071557	223	MADS-domain transcription factor, partia	0.919	0.869	0.616	9e-63
333827677	226	apetala3-like protein [Vitis labrusca x	0.981	0.915	0.592	1e-62
1370276	227	MADS-box protein [Nicotiana tabacum]	0.976	0.907	0.597	1e-62
118426	227	RecName: Full=Floral homeotic protein DE	0.981	0.911	0.587	5e-61

>gi|343887324|dbj|BAK61870.1| MADS-box protein (CitMADS8) [Citrus unshiu]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/211 (100%), Positives = 211/211 (100%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP
Sbjct: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE
Sbjct: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
           LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE
Sbjct: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180

Query: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
           YELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Sbjct: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116078103|dbj|BAF34915.1| MADS-box protein [Citrus unshiu]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/211 (99%), Positives = 210/211 (99%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP
Sbjct: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE
Sbjct: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
           LTGLEQDILDGLKII ECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE
Sbjct: 121 LTGLEQDILDGLKIIRECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180

Query: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
           YELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Sbjct: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458107|ref|XP_002279735.1| PREDICTED: floral homeotic protein DEFICIENS [Vitis vinifera] gi|125616882|gb|ABN46893.1| AP3-like MADS-box protein [Vitis labrusca x Vitis vinifera] gi|302142587|emb|CBI19790.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (635), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 127/211 (60%), Positives = 161/211 (76%), Gaps = 4/211 (1%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+E+KRIEN+TNRQVT+SKRRNG+FKKA ELT+LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIEIKRIENSTNRQVTYSKRRNGIFKKASELTVLCDAKVSIIMLSSTGKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STTTKQ+ D YQ TL VDLWS HYE+M ENL  ++ VN+ L+K+IRQRMGE L+DL++EE
Sbjct: 61  STTTKQIFDQYQNTLGVDLWSYHYERMQENLKKLKDVNKNLRKEIRQRMGEHLSDLSVEE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
           L  LEQ++   LK++ + K QV+  QI TFK+KVR V++ +K+L   F  +A++ D H  
Sbjct: 121 LRDLEQEMESSLKMVRDRKYQVINNQIETFKKKVRNVEQIHKNLLHEF--DARDRDQH-- 176

Query: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
           Y LVDNG   +S  GF N    +FAL LQPN
Sbjct: 177 YGLVDNGGDYESVLGFSNGSSPVFALSLQPN 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302584056|gb|ADL57412.1| MADS domain transcription factor [Camellia japonica]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 127/211 (60%), Positives = 162/211 (76%), Gaps = 4/211 (1%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN+TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HE+ISP
Sbjct: 1   MARGKIQIKRIENSTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMVSSTGKLHEFISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           ST+TKQ+ D YQK L +DLW SHYE+M E+L  ++ VN+ L+ +IRQRMG+ LNDL+ EE
Sbjct: 61  STSTKQMYDQYQKALGIDLWCSHYERMQEHLKKLKDVNKNLRTEIRQRMGDCLNDLSYEE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
           L GLEQD+   +KII + K +VL  QI T K+K R V++ +++L     +N+KEEDP  +
Sbjct: 121 LCGLEQDMESSVKIIRDRKYKVLNNQIETQKKKKRNVEEIHRNLLHQ--VNSKEEDP--Q 176

Query: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
           Y LVDNG   +S  GF N G GI ALRLQPN
Sbjct: 177 YGLVDNGVDYNSILGFSNGGHGILALRLQPN 207

Source: Camellia japonica

Species: Camellia japonica

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126023786|gb|ABN71371.1| flowering-related B-class MADS-box protein APETALA3 [Vitis vinifera] gi|269116070|gb|ACZ26526.1| apetala3 [Vitis vinifera]

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 126/211 (59%), Positives = 161/211 (76%), Gaps = 4/211 (1%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+E+KRIEN+TNRQVT+SKRRNG+FKKA ELT+LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIEIKRIENSTNRQVTYSKRRNGIFKKASELTVLCDAKVSIIMLSSTGKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STTTKQ+ D YQ TL VDLWS HYE+M ENL  ++ VN+ L+K+IRQRMGE L+DL++EE
Sbjct: 61  STTTKQIFDQYQNTLGVDLWSYHYERMQENLKKLKDVNKNLRKEIRQRMGEHLSDLSVEE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
           L  LEQ++   LK++ + K QV+  QI TFK+KVR V++ +K+L   F  +A++ D +  
Sbjct: 121 LRDLEQEMESSLKMVRDRKYQVINNQIETFKKKVRNVEQIHKNLLHEF--DARDRDQY-- 176

Query: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
           Y LVDNG   +S  GF N    +FAL LQPN
Sbjct: 177 YGLVDNGGDYESVLGFSNGSSPVFALSLQPN 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315418854|gb|ADU15474.1| AP3 [Actinidia eriantha]

 Score =  245 bits (626), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 126/211 (59%), Positives = 160/211 (75%), Gaps = 4/211 (1%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN+TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIQIKRIENSTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S +TKQL D YQKTL +DLWSSHYEKM E+L  ++ VNR  +++IRQRMGESLN+L+ E+
Sbjct: 61  SVSTKQLFDQYQKTLGIDLWSSHYEKMQEHLKKLKDVNRNFRREIRQRMGESLNELSYED 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
           L GLEQD+   LKII + K +V+  QI T+K+K+R V++ ++SL   F  +A   DP   
Sbjct: 121 LRGLEQDMETSLKIIRDRKYKVIGNQIETYKKKLRNVEEIHRSLLHEF--DAIGADP--T 176

Query: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
           Y LVDN    DS   + + G GI ALRLQP+
Sbjct: 177 YGLVDNEGDYDSVLAYSDGGRGILALRLQPD 207

Source: Actinidia eriantha

Species: Actinidia eriantha

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|262071557|gb|ACY08903.1| MADS-domain transcription factor, partial [Diospyros digyna]

 Score =  245 bits (625), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 122/198 (61%), Positives = 151/198 (76%), Gaps = 4/198 (2%)

Query: 14  ATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK 73
            TNRQVT+SKRRNGLFKKA ELT+LCDA+VSI++ SST K HEYI+P+TTTKQL D YQK
Sbjct: 2   GTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMVSSTGKIHEYINPTTTTKQLFDQYQK 61

Query: 74  TLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLK 133
           TL +DLWSSHYE+M ENL  ++ VNR L++QIRQRMGESLNDL   E+ GLE+DI   LK
Sbjct: 62  TLNIDLWSSHYERMQENLKKLKDVNRNLRRQIRQRMGESLNDLNFNEMHGLEEDIESSLK 121

Query: 134 IIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYEYELVDNGEHCDSD 193
           +I E K +V+  QI T+K+K+R V++ N++L   F   A+EEDPH  Y LVDNG   +  
Sbjct: 122 VIRERKYKVIGNQIETYKKKMRNVEEINRNLMHEF--GAREEDPH--YGLVDNGVDYEHV 177

Query: 194 FGFQNEGPGIFALRLQPN 211
            GF N GP + ALRLQP+
Sbjct: 178 LGFLNGGPRMLALRLQPH 195

Source: Diospyros digyna

Species: Diospyros digyna

Genus: Diospyros

Family: Ebenaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333827677|gb|AEG19541.1| apetala3-like protein [Vitis labrusca x Vitis vinifera]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/211 (59%), Positives = 160/211 (75%), Gaps = 4/211 (1%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+E+KRIEN+TNRQVT+SKRRNG+FKKA ELT+LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIEIKRIENSTNRQVTYSKRRNGIFKKASELTVLCDAKVSIIMLSSTGKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S TTKQ+ D YQ TL VDLWS HYE+M ENL  ++ VN+ L+K+IRQRMGE L+DL++EE
Sbjct: 61  SATTKQIFDQYQNTLGVDLWSYHYERMQENLKKLKDVNKNLRKEIRQRMGEHLSDLSVEE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
           L  LEQ++   LK++ + K QV+  QI TFK+KVR V++ +K+L   F  +A++ D +  
Sbjct: 121 LRDLEQEMESSLKMVRDRKYQVINNQIETFKKKVRNVEQIHKNLLHEF--DARDRDQY-- 176

Query: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
           Y LVDNG   +S  GF N    +FAL LQPN
Sbjct: 177 YGLVDNGGDYESVLGFSNGSSPVFALSLQPN 207

Source: Vitis labrusca x Vitis vinifera

Species: Vitis labrusca x Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1370276|emb|CAA65288.1| MADS-box protein [Nicotiana tabacum]

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 126/211 (59%), Positives = 162/211 (76%), Gaps = 5/211 (2%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HE+ISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S TTKQL DLYQKT+ VDLW+SHYEKM E L  ++ VNR L+++IRQRMGESLNDL  E+
Sbjct: 61  SVTTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKDVNRNLRREIRQRMGESLNDLNYEQ 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
           L  L +++ + LK+I E K +V+  QI+T+K+KVR V++ +++L   F  +A++EDP   
Sbjct: 121 LEELNENVDNSLKLIRERKYKVIGNQIDTYKKKVRNVEEIHRNLLLEF--DARQEDP--- 175

Query: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
           Y LV+     +S  GF N GP I ALRLQPN
Sbjct: 176 YGLVEQEGDYNSVLGFPNGGPRILALRLQPN 206

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118426|sp|P23706.1|DEFA_ANTMA RecName: Full=Floral homeotic protein DEFICIENS gi|16018|emb|CAA44629.1| DEF A protein [Antirrhinum majus] gi|16020|emb|CAA36268.1| deficiens [Antirrhinum majus]

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 124/211 (58%), Positives = 160/211 (75%), Gaps = 4/211 (1%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA EL++LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           +T TKQL D YQK + VDLWSSHYEKM E+L  + +VNR L+++IRQRMGESLNDL  E+
Sbjct: 61  TTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQ 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
           +  L +D+ + LK+I E K +V++ QI+T K+KVR V++ +++L   F  +A+ EDPH  
Sbjct: 121 IVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEF--DARREDPH-- 176

Query: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
           + LVDN    +S  GF N GP I ALRL  N
Sbjct: 177 FGLVDNEGDYNSVLGFPNGGPRIIALRLPTN 207

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
UNIPROTKB|P23706	227	DEFA "Floral homeotic protein	0.981	0.911	0.587	1.2e-58
UNIPROTKB|Q9ZS27	228	gdef2 "MADS-box protein, GDEF2	0.981	0.907	0.521	1.2e-51
TAIR|locus:2096164	232	AP3 "APETALA 3" [Arabidopsis t	0.981	0.892	0.511	1.2e-49
UNIPROTKB|Q9ZS28	226	gdef1 "MADs-box protein, GDEF1	0.981	0.915	0.460	3.8e-46
UNIPROTKB|Q03378	215	GLO "Floral homeotic protein G	0.957	0.939	0.373	1.1e-30
UNIPROTKB|Q9ZS26	197	gglo1 "MADS-box protein, GGLO1	0.834	0.893	0.373	3.8e-30
TAIR|locus:2149264	208	PI "PISTILLATA" [Arabidopsis t	0.677	0.687	0.433	1.7e-27
UNIPROTKB|Q9ZS25	210	gsqua1 "MADS-box protein, GSQU	0.810	0.814	0.370	2.2e-27
UNIPROTKB|Q10CQ1	246	MADS14 "MADS-box transcription	0.824	0.707	0.396	3.5e-27
TAIR|locus:2042182	234	AGL44 "AGAMOUS-like 44" [Arabi	0.819	0.739	0.398	1.9e-26

UNIPROTKB|P23706 DEFA "Floral homeotic protein DEFICIENS" [Antirrhinum majus (taxid:4151)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 124/211 (58%), Positives = 160/211 (75%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             M RGK+++KRIEN TNRQVT+SKRRNGLFKKA EL++LCDAKVSI++ SST K HEYISP
Sbjct:     1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             +T TKQL D YQK + VDLWSSHYEKM E+L  + +VNR L+++IRQRMGESLNDL  E+
Sbjct:    61 TTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQ 120

Query:   121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
             +  L +D+ + LK+I E K +V++ QI+T K+KVR V++ +++L   F  +A+ EDPH+ 
Sbjct:   121 IVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEF--DARREDPHFG 178

Query:   181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
               LVDN    +S  GF N GP I ALRL  N
Sbjct:   179 --LVDNEGDYNSVLGFPNGGPRIIALRLPTN 207

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS27 gdef2 "MADS-box protein, GDEF2" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 111/213 (52%), Positives = 147/213 (69%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             M RGK+++K+IEN+TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ S T K HEYISP
Sbjct:     1 MARGKIQIKKIENSTNRQVTYSKRRNGLFKKASELTVLCDAKVSIIMVSCTDKLHEYISP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             S TTKQ  D YQK   +DLW+SHYEKM E L  +++VNR L++QIRQR+G+ L DL  EE
Sbjct:    61 SITTKQFFDQYQKASGIDLWNSHYEKMQEELRQLKEVNRNLRRQIRQRLGDCLEDLGFEE 120

Query:   121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
                LE++  + + II E K +V+  ++ T K+KVR  Q   K L   F I    EDP  +
Sbjct:   121 FLDLEKESQEAVYIIRERKLKVIGNKLETSKKKVRSAQDVYKKLMHEFDIRG--EDP--Q 176

Query:   181 YELVDNGEHCDSDFGFQNE--GPGIFALRLQPN 211
             Y ++++G   ++ +G+      P I  LRLQPN
Sbjct:   177 YGMIEDGVEYEALYGYPPHISAPRILTLRLQPN 209

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2096164 AP3 "APETALA 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 108/211 (51%), Positives = 146/211 (69%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDA+VSI++ SS+ K HEYISP
Sbjct:     1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             +TTTK+++DLYQ    VD+W++ YE+M E    + + NR L+ QI+QR+GE L++L ++E
Sbjct:    61 NTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQE 120

Query:   121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
             L  LE ++ +  K++ E K + L  QI T K+K +  Q   K+L     + A  EDPHY 
Sbjct:   121 LRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRA--EDPHYG 178

Query:   181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
               LVDNG   DS  G+Q EG   +ALR   N
Sbjct:   179 --LVDNGGDYDSVLGYQIEGSRAYALRFHQN 207

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q9ZS28 gdef1 "MADs-box protein, GDEF1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 98/213 (46%), Positives = 146/213 (68%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+E+K+IEN TNRQVT+SKRRNG+FKKA ELT+LCDAKVS+++ S+T K HEYISP
Sbjct:     1 MGRGKIEIKKIENNTNRQVTYSKRRNGIFKKAHELTVLCDAKVSLIMFSNTGKFHEYISP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQR-MGESLNDLTLE 119
             STTTK++ D YQ T+  DLWSSHYE+M E +  ++  N  L+++IRQR +GE  + L + 
Sbjct:    61 STTTKKMYDQYQSTVGFDLWSSHYERMKETMKKLKDTNNKLRREIRQRVLGEDFDGLDMN 120

Query:   120 ELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQ-DGFIINAKEEDPH 178
             +LT LEQ + D L ++ E K  V+  Q +T +++VR +++ N +L+ D   I+  ++   
Sbjct:   121 DLTSLEQHMQDSLTLVRERKYHVIKTQTDTCRKRVRNLEQRNGNLRLDYETIHQLDK--- 177

Query:   179 YEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211
              +Y+  +N    +S   + N    ++A  + PN
Sbjct:   178 -KYDTGENEGDYESVVAYSNGVSNLYAFCVHPN 209

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q03378 GLO "Floral homeotic protein GLOBOSA" [Antirrhinum majus (taxid:4151)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 80/214 (37%), Positives = 122/214 (57%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+E+KRIEN++NRQVT+SKRRNG+ KKA+E+++LCDA VS++I +S+ K HE+ SP
Sbjct:     1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             STT   +LD Y K     LW   +E +   +  V++ N  ++ ++R   GE +  L  +E
Sbjct:    61 STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query:   121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPH-- 178
             L  LE  + +G   +   K     R +      V   ++EN+SLQ  F +     DP   
Sbjct:   121 LMVLEDALENGTSALKN-KQMEFVRMMRKHNEMV---EEENQSLQ--FKLRQMHLDPMND 174

Query:   179 --YEYELVDNGEHCDSDFGFQNEGPGIFALRLQP 210
                E + V +  H  +   ++ + P  FA R+QP
Sbjct:   175 NVMESQAVYDHHHHQNIADYEAQMP--FAFRVQP 206

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS26 gglo1 "MADS-box protein, GGLO1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 68/182 (37%), Positives = 110/182 (60%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+E+KRIEN +NRQVT+SKR+NG+ KKA+E+T+LCDA VS++I  S+ K +EY SP
Sbjct:     1 MGRGKIEIKRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCSP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
              T    +LD YQ+     LW + +E +   +  +++ N  ++ ++R   GE +  L  EE
Sbjct:    61 KTNLIDMLDRYQRLSGNKLWDAKHENLQNEIDRIKKENESMQIELRHLKGEDITSLNYEE 120

Query:   121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180
             L   E  + +GL  I E KD++        ++  + +++ENK L   +++   E     +
Sbjct:   121 LIAYEDALENGLTNIREKKDEIP----KIMRKHEQVLEEENKHLM--YLVQQSEMAAMGD 174

Query:   181 YE 182
             Y+
Sbjct:   175 YQ 176

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149264 PI "PISTILLATA" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 62/143 (43%), Positives = 91/143 (63%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+E+KRIENA NR VTFSKRRNGL KKA+E+T+LCDAKV+++I +S  K  +Y  P
Sbjct:     1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             S     +LD YQK     LW + +E +   +  +++ N  L+ ++R   GE +  L L+ 
Sbjct:    61 SMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKN 120

Query:   121 LTGLEQDILDGLKIIHECKDQVL 143
             L  +E  I  GL  + + + ++L
Sbjct:   121 LMAVEHAIEHGLDKVRDHQMEIL 143

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q9ZS25 gsqua1 "MADS-box protein, GSQUA1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 67/181 (37%), Positives = 110/181 (60%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+++KRIEN  NRQVTFSKRR GL KKA E+++LCDA+V++++ S+  K  EY S 
Sbjct:     1 MGRGKVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-ST 59

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYE-----KMLENLGAVEQVNRILKKQIRQRMGESLND 115
              +  + +LD Y++   +D      +     +  +    ++    +L++ +R  MGE +  
Sbjct:    60 DSCMENILDRYEQYSNIDRQHVAVDTDSPIRWTQECNKLKSRAELLQRNLRHYMGEDIES 119

Query:   116 LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEE 175
             L L E+  LEQ +   LK IH  K+Q+L + I+  ++K + +Q++N +L    I N KE+
Sbjct:   120 LGLREIQNLEQQLDTALKRIHSKKNQLLHQSISELQKKEKAIQEQNNTL----IKNIKEK 175

Query:   176 D 176
             +
Sbjct:   176 E 176

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q10CQ1 MADS14 "MADS-box transcription factor 14" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 77/194 (39%), Positives = 116/194 (59%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+++KRIEN  NRQVTFSKRR+GL KKA E+++LCDA+V+++I S+  K +EY + 
Sbjct:     1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATD 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVN-----RILKKQIR--QR----- 108
             S   K +L+ Y++        S+ EK+L +  +  Q N     R LK ++   Q+     
Sbjct:    61 SCMDK-ILERYERY-------SYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHL 112

Query:   109 MGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168
             MGE L  L L+EL  LEQ + + LK I   K Q++   IN  +RK + +Q+ENK LQ   
Sbjct:   113 MGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKEL 172

Query:   169 IINAKEEDPHYEYE 182
             +   K +    +++
Sbjct:   173 VEKQKVQKQQVQWD 186

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2042182 AGL44 "AGAMOUS-like 44" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 71/178 (39%), Positives = 113/178 (63%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+ ++RI+N+T+RQVTFSKRR+GL KKA+EL+ILCDA+V ++I SST K ++Y S 
Sbjct:     1 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

Query:    61 STTTKQLLDLYQ--KTLRVDLWSSHYE-KMLEN-LGAVEQVNRILKKQIRQRMGESLNDL 116
             S+  K +++ Y   K  +  L +   E K  +  + +++Q  + L++  R+ +GE L+ +
Sbjct:    61 SSM-KTIIERYNRVKEEQHQLLNHASEIKFWQREVASLQQQLQYLQECHRKLVGEELSGM 119

Query:   117 TLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKE 174
                +L  LE  ++  LK +   KDQ++  +I    RK + +QKEN  LQ+   I  KE
Sbjct:   120 NANDLQNLEDQLVTSLKGVRLKKDQLMTNEIRELNRKGQIIQKENHELQNIVDIMRKE 177

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0007584 "response to nutrient" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0008134 "transcription factor binding" evidence=IPI

GO:0071249 "cellular response to nitrate" evidence=IEP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010167 "response to nitrate" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944S9	MAD16_ORYSJ	No assigned EC number	0.4454	0.9763	0.9196	yes	no
Q07472	MADS1_PETHY	No assigned EC number	0.5961	0.9620	0.8787	N/A	no
P23706	DEFA_ANTMA	No assigned EC number	0.5876	0.9810	0.9118	N/A	no
P35632	AP3_ARATH	No assigned EC number	0.5118	0.9810	0.8922	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	8e-38
smart00432	59	smart00432, MADS, MADS domain	8e-31
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	9e-28
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	8e-23
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	2e-20
pfam01486	100	pfam01486, K-box, K-box region	7e-20
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	1e-07

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  125 bits (316), Expect = 8e-38
 Identities = 48/79 (60%), Positives = 65/79 (82%), Gaps = 2/79 (2%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GRGK+E+KRIEN+TNRQVTFSKRRNGL KKA EL++LCDA+V+++I SS+ K +E+ SPS
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 62 TTTKQLLDLYQKTLRVDLW 80
             +++++ YQKT    LW
Sbjct: 61 --MEKIIERYQKTSGSSLW 77

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  107 bits (269), Expect = 8e-31
 Identities = 40/59 (67%), Positives = 51/59 (86%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
          GR K+E+KRIEN TNRQVTFSKRRNGLFKKA EL++LCDA+V++++ S T K +E+ SP
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 99.1 bits (248), Expect = 9e-28
 Identities = 38/59 (64%), Positives = 51/59 (86%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
          GRGK+E+KRIEN T+RQVTFSKRRNGLFKKA EL++LCDA+V++++ S + K +E+ S 
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 87.3 bits (217), Expect = 8e-23
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GR K+++KRIEN   R VTFSKRR GLFKKA EL+ LC A+V++++ S + K + +   S
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 80.1 bits (198), Expect = 2e-20
 Identities = 36/51 (70%), Positives = 45/51 (88%)

Query: 9  KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          KRIEN +NRQVTFSKRRNG+FKKA EL++LCDA+V+++I SST K +EY S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 80.3 bits (199), Expect = 7e-20
 Identities = 36/95 (37%), Positives = 59/95 (62%)

Query: 71  YQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILD 130
           YQK    DLW S YE + +    +++ N  L+++ R  +GE L  L+L+EL  LEQ + +
Sbjct: 1   YQKLSGNDLWESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLEN 60

Query: 131 GLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQ 165
           GLK I   K+++L  QI   ++K R +Q+EN++L+
Sbjct: 61  GLKHIRSRKNELLLNQIEELQKKERELQEENRNLR 95

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           +   K+ +  I N T R VTFSKR++G+ KKA EL++L   +V +L+ S     H + +P
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  S 61
            
Sbjct: 141 K 141

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.97
smart00432	59	MADS MADS domain.	99.97
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.94
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.83
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.78
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.49
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	91.7
PRK04098	158	sec-independent translocase; Provisional	88.44
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	86.45
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	85.35
KOG4797	123	consensus Transcriptional regulator [Transcription	85.05
PRK10884	206	SH3 domain-containing protein; Provisional	84.75
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	84.21
PF05812	118	Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro:	83.77
PHA03155	115	hypothetical protein; Provisional	83.37
PRK15422	79	septal ring assembly protein ZapB; Provisional	81.67
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	81.45

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=1.3e-38  Score=258.68  Aligned_cols=158  Identities=33%  Similarity=0.473  Sum_probs=123.9

Q ss_pred             CCccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhhccccc
Q 028296            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLW   80 (211)
Q Consensus         1 MgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~~~~~   80 (211)
                      |||+||+|++|+|.++|+|||+|||+||||||+||||||||+||||||||+|++|+||+|+.+|..|++||...+.....
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999876699999999886542211


Q ss_pred             h---hhhHH----------------------hHhhHHHHHHHHHHHH---HHHHhhcCCCCCCCCH-HHHHHHHHHHHHH
Q 028296           81 S---SHYEK----------------------MLENLGAVEQVNRILK---KQIRQRMGESLNDLTL-EELTGLEQDILDG  131 (211)
Q Consensus        81 ~---~~~e~----------------------lq~el~kLk~~~~~L~---~~ir~~~Ge~L~~Ls~-~EL~~LE~~Le~~  131 (211)
                      .   .....                      .......+....+.+.   ...+++.|+++.+++. .+|..++.+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            0   00000                      1111222333333333   2357888999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHhhhhHH
Q 028296          132 LKIIHECKDQVLARQIN-TFKRKVRGVQ  158 (211)
Q Consensus       132 L~~Ir~RK~~ll~~qi~-~l~kk~~~l~  158 (211)
                      +..++..+...+.+++. .++.+...+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKEKSLE  188 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccchhcc
Confidence            99999999988887776 4444444333

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=1.5e-34  Score=201.51  Aligned_cols=77  Identities=62%  Similarity=0.998  Sum_probs=73.4

Q ss_pred             CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhhccccc
Q 028296            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLW   80 (211)
Q Consensus         2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~~~~~   80 (211)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|+|+||+  +++||+||.+.++.++|
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s--~~~vl~ry~~~~~~~~~   77 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS--MEKIIERYQKTSGSSLW   77 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCC--HHHHHHHHHhccccccC
Confidence            899999999999999999999999999999999999999999999999999999999986  59999999998876654

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=1.5e-31  Score=189.02  Aligned_cols=74  Identities=42%  Similarity=0.685  Sum_probs=70.7

Q ss_pred             CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhhc
Q 028296            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR   76 (211)
Q Consensus         2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~   76 (211)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+++.|++++. +..++++|...+.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~   74 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSA   74 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCH
Confidence            8999999999999999999999999999999999999999999999999999999988874 9999999988764

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.97  E-value=2.6e-31  Score=175.22  Aligned_cols=59  Identities=68%  Similarity=1.042  Sum_probs=58.2

Q ss_pred             CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCC
Q 028296            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP   60 (211)
Q Consensus         2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp   60 (211)
                      ||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|+++.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999987

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.96  E-value=1.9e-30  Score=171.24  Aligned_cols=59  Identities=64%  Similarity=1.014  Sum_probs=57.8

Q ss_pred             CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCC
Q 028296            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP   60 (211)
Q Consensus         2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp   60 (211)
                      ||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|+++.|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999875

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.94  E-value=1.8e-28  Score=156.69  Aligned_cols=51  Identities=51%  Similarity=0.812  Sum_probs=46.8

Q ss_pred             eeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccC
Q 028296            9 KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS   59 (211)
Q Consensus         9 ~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~s   59 (211)
                      |+|+|++.|++||+||+.||||||+|||+||||+||+|||||+|++|.|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            589999999999999999999999999999999999999999999999975

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.83  E-value=5.9e-20  Score=134.37  Aligned_cols=98  Identities=38%  Similarity=0.614  Sum_probs=94.9

Q ss_pred             HhhhhccccchhhhHHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028296           71 YQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTF  150 (211)
Q Consensus        71 Y~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l  150 (211)
                      |.+.++.+.|...++.++.++.+++.+++.|+..+|+++|++|++||++||..||.+|+.+|..||+||.+++.++|+.|
T Consensus         1 Y~~~~~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l   80 (100)
T PF01486_consen    1 YQKQSGTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEEL   80 (100)
T ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            66777888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHH
Q 028296          151 KRKVRGVQKENKSLQDGF  168 (211)
Q Consensus       151 ~kk~~~l~een~~L~~~~  168 (211)
                      ++|++.+.++|..|+.++
T Consensus        81 ~~ke~~l~~en~~L~~~~   98 (100)
T PF01486_consen   81 KKKERELEEENNQLRQKI   98 (100)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999999987

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.78  E-value=3.9e-20  Score=154.95  Aligned_cols=60  Identities=43%  Similarity=0.661  Sum_probs=58.8

Q ss_pred             CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCc
Q 028296            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS   61 (211)
Q Consensus         2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~   61 (211)
                      ||.||+|++|+|+..|.|||||||.||||||+|||||+|.+|-|+|.|.+|-+|.|+.|.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpK  122 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPK  122 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccc
Confidence            799999999999999999999999999999999999999999999999999999999985

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.49  E-value=1.7e-14  Score=126.26  Aligned_cols=61  Identities=38%  Similarity=0.586  Sum_probs=59.9

Q ss_pred             CCccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCc
Q 028296            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS   61 (211)
Q Consensus         1 MgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~   61 (211)
                      |||+|+.|..|+|+.+|.|||+||+.||+|||+||+||.|.+|.++|.|.+|.++.|+.|.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~  141 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK  141 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCc
Confidence            7899999999999999999999999999999999999999999999999999999999985

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=91.70  E-value=1.6  Score=29.76  Aligned_cols=47  Identities=26%  Similarity=0.367  Sum_probs=31.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 028296          116 LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDG  167 (211)
Q Consensus       116 Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~  167 (211)
                      +|++.+..||..+..++..|..=     ..++..|+.+...|.++|..|...
T Consensus         1 M~~E~l~~LE~ki~~aveti~~L-----q~e~eeLke~n~~L~~e~~~L~~e   47 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIALL-----QMENEELKEKNNELKEENEELKEE   47 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHH
Confidence            47889999999999999988653     445566666655555555554443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK04098 sec-independent translocase; Provisional

Probab=88.44  E-value=0.54  Score=36.98  Aligned_cols=30  Identities=17%  Similarity=0.270  Sum_probs=21.7

Q ss_pred             eEEEEEecCCCccccccCCcchhHHHHHHHhhhh
Q 028296           42 KVSILICSSTAKAHEYISPSTTTKQLLDLYQKTL   75 (211)
Q Consensus        42 eva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~   75 (211)
                      =||||||+| ++++..+-   ++-..+..|++..
T Consensus        14 vVaLlvfGP-~KLP~~~r---~lGk~ir~~K~~~   43 (158)
T PRK04098         14 VVAIIFLGP-DKLPQAMV---DIAKFFKAVKKTI   43 (158)
T ss_pred             HHHHhhcCc-hHHHHHHH---HHHHHHHHHHHHH
Confidence            378999999 58888764   4566777777654

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=86.45  E-value=1.8  Score=28.22  Aligned_cols=28  Identities=25%  Similarity=0.401  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296          141 QVLARQINTFKRKVRGVQKENKSLQDGF  168 (211)
Q Consensus       141 ~ll~~qi~~l~kk~~~l~een~~L~~~~  168 (211)
                      +.+.++|..|..+...|+.||..|+...
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~   44 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQNA   44 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4667888888888888999988888765

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=85.35  E-value=23  Score=31.06  Aligned_cols=70  Identities=16%  Similarity=0.247  Sum_probs=46.9

Q ss_pred             HHHHHHHHhhc--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296           99 RILKKQIRQRM--GESLNDLTLEELTGLEQDILDGLKIIHECKDQVL--ARQINTFKRKVRGVQKENKSLQDGF  168 (211)
Q Consensus        99 ~~L~~~ir~~~--Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll--~~qi~~l~kk~~~l~een~~L~~~~  168 (211)
                      ..|+.++.++.  -.+++.++.++|..+-..|..-...|...+.++-  .+++..+..++....+.-..+...+
T Consensus       182 ~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I  255 (312)
T smart00787      182 DALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI  255 (312)
T ss_pred             HHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444433  3568899999999999999888888877665543  3455566666666666656666665

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=85.05  E-value=4.6  Score=29.70  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHH
Q 028296          142 VLARQINTFKRKVRGVQKENKSLQD  166 (211)
Q Consensus       142 ll~~qi~~l~kk~~~l~een~~L~~  166 (211)
                      .+.+||..|..+...|++||.-|+.
T Consensus        71 ~Lk~qI~eL~er~~~Le~EN~lLk~   95 (123)
T KOG4797|consen   71 VLKEQIRELEERNSALERENSLLKT   95 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455555555555566666555544

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.75  E-value=21  Score=29.38  Aligned_cols=30  Identities=20%  Similarity=0.205  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296          139 KDQVLARQINTFKRKVRGVQKENKSLQDGF  168 (211)
Q Consensus       139 K~~ll~~qi~~l~kk~~~l~een~~L~~~~  168 (211)
                      ..+-+.+++..++.+...|+.+|..+....
T Consensus       140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        140 ENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444557777888888888888887777665

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=84.21  E-value=2.7  Score=27.52  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=27.0

Q ss_pred             hhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028296          107 QRMGESLNDLTLEELTGLEQDILDGLKIIHECK  139 (211)
Q Consensus       107 ~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK  139 (211)
                      +..|+||+.||++||..--..|+.-+.+++.-.
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~   44 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAI   44 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            467999999999999998888887777776643

The function of this family is unknown.

>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins

Probab=83.77  E-value=10  Score=28.37  Aligned_cols=69  Identities=20%  Similarity=0.286  Sum_probs=46.6

Q ss_pred             hhHHhHhhHHHHHHHHHHHHHHHHhhcC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028296           83 HYEKMLENLGAVEQVNRILKKQIRQRMG----ESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV  154 (211)
Q Consensus        83 ~~e~lq~el~kLk~~~~~L~~~ir~~~G----e~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~  154 (211)
                      .++.|..++.+|+-+|..|++.+++-.|    .+-.-|+..+=..+-...-.+|...-.+|   |...+..+-.+.
T Consensus         4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~K---Ie~kVr~~t~~~   76 (118)
T PF05812_consen    4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKK---IEAKVRKLTAKL   76 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhh
Confidence            3578889999999999999999999887    66778899888777766666666655554   444444444443

; PDB: 2OA5_B 2H3R_D.

>PHA03155 hypothetical protein; Provisional

Probab=83.37  E-value=13  Score=27.67  Aligned_cols=57  Identities=21%  Similarity=0.196  Sum_probs=44.5

Q ss_pred             hhHHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028296           83 HYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECK  139 (211)
Q Consensus        83 ~~e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK  139 (211)
                      ..|.|..++.+|+-+|..|++.+++-.+++=.-|+..+=..+-...-.+|...-++|
T Consensus         9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K   65 (115)
T PHA03155          9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK   65 (115)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888999999999999999998766666577898888877777766666655554

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=81.67  E-value=12  Score=26.00  Aligned_cols=43  Identities=23%  Similarity=0.412  Sum_probs=30.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 028296          116 LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKS  163 (211)
Q Consensus       116 Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~  163 (211)
                      +|++=|.+||..+..++..|-     ++.-+|+.|+.|...|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            477788999999998888875     4555667777766555554443

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=81.45  E-value=0.51  Score=24.96  Aligned_cols=12  Identities=17%  Similarity=0.210  Sum_probs=9.9

Q ss_pred             EEEecCCCcccc
Q 028296           45 ILICSSTAKAHE   56 (211)
Q Consensus        45 ~Iifs~~gkl~~   56 (211)
                      +.+|||.|+++.
T Consensus         5 ~t~FSp~Grl~Q   16 (23)
T PF10584_consen    5 ITTFSPDGRLFQ   16 (23)
T ss_dssp             TTSBBTTSSBHH
T ss_pred             ceeECCCCeEEe
Confidence            458999999985

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		1e-10
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		1e-10
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-10
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		2e-10
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		3e-10
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		6e-10
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		5e-09
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		3e-06
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		4e-06

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 44/59 (74%)
Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          MGR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S  +  +Y S
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAS 59

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 44/59 (74%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++L DA+++++I +S+ K  +Y S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYAS 58

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S  +  +Y S
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAS 58

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 3  RGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
          R K+E+K IEN T R VTFSKR++G+ KKA EL++L   +V +L+ S T   + + +P
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + +
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + +
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	4e-33
1egw_A	77	MADS box transcription enhancer factor 2, polypept	2e-32
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	4e-32
1hbx_A	92	SRF, serum response factor; gene regulation, trans	5e-32
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	3e-31

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  113 bits (285), Expect = 4e-33
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
            R K+E+K IEN T R VTFSKR++G+ KKA EL++L   +V +L+ S T   + + +P
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 STTTKQLLDLYQK 73
              + ++   + 
Sbjct: 76 K--FEPIVTQQEG 86

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  111 bits (280), Expect = 2e-32
 Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 TTTKQLLDLYQK 73
              ++L  Y +
Sbjct: 61 --MDKVLLKYTE 70

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  110 bits (278), Expect = 4e-32
 Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 TTTKQLLDLYQKTLRVDLWSSHYE 85
              ++L  Y +        ++ +
Sbjct: 61 --MDKVLLKYTEYNEPHESRTNSD 82

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  110 bits (277), Expect = 5e-32
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + + 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 STTTKQLLDLYQK 73
              + ++     
Sbjct: 70 K--LQPMITSETG 80

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  109 bits (273), Expect = 3e-31
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + + 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 STTTKQLLDLYQK 73
              + ++     
Sbjct: 69 K--LQPMITSETG 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	83.34
1ytz_T	107	Troponin T; muscle, THIN filament, actin binding,	80.54
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	80.18

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=6.5e-39  Score=221.22  Aligned_cols=72  Identities=42%  Similarity=0.698  Sum_probs=68.9

Q ss_pred             CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhh
Q 028296            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTL   75 (211)
Q Consensus         2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~   75 (211)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||  +|++||+||+..+
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~--~~~~il~ry~~~~   72 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYN   72 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHC-
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC--CHHHHHHHHHhcc
Confidence            89999999999999999999999999999999999999999999999999999999987  4899999999865

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=2.3e-38  Score=223.72  Aligned_cols=73  Identities=41%  Similarity=0.690  Sum_probs=70.4

Q ss_pred             CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhhc
Q 028296            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR   76 (211)
Q Consensus         2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~   76 (211)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||  +|..||+||+..+.
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~--~~~~il~rY~~~~~   73 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYNE   73 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHCCS
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC--CHHHHHHHHHhcCc
Confidence            89999999999999999999999999999999999999999999999999999999996  58999999998765

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=5.6e-37  Score=220.16  Aligned_cols=78  Identities=36%  Similarity=0.523  Sum_probs=71.2

Q ss_pred             CCccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhhccccc
Q 028296            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLW   80 (211)
Q Consensus         1 MgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~~~~~   80 (211)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+  +..|+++|..   .++|
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps--~~~il~r~~G---~~lw   90 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEG---RNLI   90 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHH---HHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCC--HHHHHHHhhC---CcHH
Confidence            8999999999999999999999999999999999999999999999999999999999995  5799988864   3455


Q ss_pred             hhh
Q 028296           81 SSH   83 (211)
Q Consensus        81 ~~~   83 (211)
                      +..
T Consensus        91 ~~c   93 (100)
T 1mnm_A           91 QAC   93 (100)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=9.5e-37  Score=216.26  Aligned_cols=71  Identities=32%  Similarity=0.484  Sum_probs=67.5

Q ss_pred             CCccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhh
Q 028296            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK   73 (211)
Q Consensus         1 MgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~   73 (211)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+  |..+|++|..
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~--~~~~i~~~~G   80 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSETG   80 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGG--GGGGTSSHHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCC--HHHHHhhhcc
Confidence            9999999999999999999999999999999999999999999999999999999999985  7899997653

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=4e-36  Score=217.04  Aligned_cols=70  Identities=33%  Similarity=0.496  Sum_probs=66.7

Q ss_pred             CCccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHh
Q 028296            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQ   72 (211)
Q Consensus         1 MgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~   72 (211)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|++|+  |..||+++.
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~--~~~vi~~~~   78 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSET   78 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGG--GGGGTSSHH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCcc--HHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999999999984  789998653

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=83.34  E-value=1.7  Score=28.64  Aligned_cols=28  Identities=25%  Similarity=0.318  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296          141 QVLARQINTFKRKVRGVQKENKSLQDGF  168 (211)
Q Consensus       141 ~ll~~qi~~l~kk~~~l~een~~L~~~~  168 (211)
                      .++.++|..|..+...|+.||..|+.-.
T Consensus        18 evLKe~I~EL~e~~~qLE~EN~~Lk~~a   45 (78)
T 1dip_A           18 EILKEQIRELVEKNSQLERENTLLKTLA   45 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4678889999999999999998887755

>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1

Probab=80.54  E-value=4.2  Score=28.87  Aligned_cols=51  Identities=14%  Similarity=0.196  Sum_probs=38.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296          110 GESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF  168 (211)
Q Consensus       110 Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~  168 (211)
                      --++++||.++|+.+-..|-..+..+-+-|+.+-.        +++.-.-+.+.|..++
T Consensus        36 pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~--------kv~kq~yEI~eL~~rV   86 (107)
T 1ytz_T           36 PLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE--------QIKRKKYEIVTLRNRI   86 (107)
T ss_dssp             CCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHH--------HHHhhhhHHHHHHHHH
Confidence            34799999999999999999999999998877633        3333334455566666

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=80.18  E-value=10  Score=24.91  Aligned_cols=49  Identities=10%  Similarity=0.173  Sum_probs=35.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296          113 LNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF  168 (211)
Q Consensus       113 L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~  168 (211)
                      +++++.  +.+|+..|..+...||.+-     +.|..+.+......++...|+.++
T Consensus        15 ~~~mgt--i~eLq~~L~~K~eELr~kd-----~~I~eLEk~L~ekd~eI~~LqseL   63 (72)
T 3nmd_A           15 IEGRGS--LRDLQYALQEKIEELRQRD-----ALIDELELELDQKDELIQMLQNEL   63 (72)
T ss_dssp             ----CH--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCc--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444443  8888888999988888863     336677788888888888888887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-30
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	6e-30
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	2e-29

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (262), Expect = 2e-30
 Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 TTTKQLLDLYQK 73
              ++L  Y +
Sbjct: 61 --MDKVLLKYTE 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 6e-30
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + + 
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 61 ST----TTKQLLDLYQKTL 75
                T++    L Q  L
Sbjct: 62 KLQPMITSETGKALIQTCL 80

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (257), Expect = 2e-29
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
           R K+E+K IEN T R VTFSKR++G+ KKA EL++L   +V +L+ S T   + + +P 
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 62 TTTKQLLDLYQKTLRVDLWSSHYEKM 87
             + ++   +     +L  +     
Sbjct: 63 --FEPIVTQQE---GRNLIQACLNAP 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-38  Score=214.07  Aligned_cols=70  Identities=43%  Similarity=0.743  Sum_probs=68.1

Q ss_pred             CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhh
Q 028296            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK   73 (211)
Q Consensus         2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~   73 (211)
                      ||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|+||+  +++|++||.+
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~--~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCC--HHHHHHHHhc
Confidence            899999999999999999999999999999999999999999999999999999999985  7999999976

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-36  Score=209.40  Aligned_cols=72  Identities=32%  Similarity=0.477  Sum_probs=68.8

Q ss_pred             CCccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT   74 (211)
Q Consensus         1 MgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~   74 (211)
                      +||+||+|++|+|+..|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+  ++.|+++|...
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~--~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGG--GHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCC--HHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999999999999985  78999999753

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-36  Score=208.69  Aligned_cols=71  Identities=38%  Similarity=0.569  Sum_probs=68.6

Q ss_pred             CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT   74 (211)
Q Consensus         2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~   74 (211)
                      ||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+  |+.|++||...
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~--v~~vl~r~~~~   73 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEGR   73 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCC--HHHHHHHHhcc
Confidence            899999999999999999999999999999999999999999999999999999999985  78999999864