Citrus Sinensis ID: 028302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGMLGPLSDGETHH
Secondary Structure (PSIPRED)
cccccccccccccEEEEEccccccHHHHHHHHHcccccEEEcccccccHHHHcccccEEEEEcccccHHHHHcccccEEEEEcccccccccHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEccccccccccEEEccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEccccHHHHHHHHHHHccccEEEEccccHHHHHHHHccccEEEEccccccHHHHHHccccEEEEEcccccccccHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccEEEccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccccHHHHHHHccHHHHHHHccEEEEc
Coil and Loop (DISEMBL)
megmarssdknitrvlfcgphfpashnytkeylqnypsiqvdvvpisdvpdVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGvglegvdinaatrcgikvaripgdvtgnaaSCAELTIYLMLGLLRKQNEMRMAIEQKklgvptgetllgKTVFILGFGNIGVELAKRLRPFGVKIiatkrswashsqvscqssgmlgplsdgethh
Flexible Loop (DISEMBL)
megmarssdkniTRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKklgvptgetlLGKTVFILGFGNIGVELAKRLRPFGVKIIAtkrswashsqvscqssgmlgplsdgethh
Low Complexity Region (SEG)
MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPsiqvdvvpisdvpdviANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGMLGPLSDGETHH
Disordered region (IsUnstruct)
***********ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA***********************
Disordered Region (DISOPRED)
**************VLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGMLGPLSDGETHH
Disordered Region (DISEMBL)
*********KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK***************************
Disordered Region (DISPRO)
*****RSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGMLGPLSDGETHH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGMLGPLSDGETHH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
O29445	527	D-3-phosphoglycerate dehy	yes	no	0.6	0.239	0.366	4e-13
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.595	0.368	0.357	1e-12
A5GFY8	533	D-3-phosphoglycerate dehy	yes	no	0.557	0.219	0.367	2e-11
A5A6P1	533	D-3-phosphoglycerate dehy	yes	no	0.590	0.232	0.345	2e-11
O43175	533	D-3-phosphoglycerate dehy	yes	no	0.590	0.232	0.345	2e-11
P35136	525	D-3-phosphoglycerate dehy	yes	no	0.666	0.266	0.278	2e-11
Q60HD7	533	D-3-phosphoglycerate dehy	N/A	no	0.590	0.232	0.338	3e-11
Q5EAD2	533	D-3-phosphoglycerate dehy	yes	no	0.590	0.232	0.345	4e-11
O08651	533	D-3-phosphoglycerate dehy	yes	no	0.604	0.238	0.323	6e-11
Q61753	533	D-3-phosphoglycerate dehy	yes	no	0.604	0.238	0.330	6e-11

>sp|O29445|SERA_ARCFU D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=serA PE=3 SV=1

 Score = 74.7 bits (182), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 16/142 (11%)

Query: 46  ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVAR 104
           I +VP     Y   VV++  ++D+  I  A  +K+I + GVG++ +DINAAT+ GI V  
Sbjct: 36  IREVP----KYEAIVVRSQTKVDAEVIQAAKNLKIIGRAGVGVDNIDINAATQRGIVVVN 91

Query: 105 IPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFIL 159
            PG   GN  S AE  I LML   RK  +   ++     E+KK     G  L GKT  ++
Sbjct: 92  APG---GNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKF---MGIELRGKTAGVI 145

Query: 160 GFGNIGVELAKRLRPFGVKIIA 181
           G G +G E+AKR +   + ++A
Sbjct: 146 GLGRVGFEVAKRCKALEMNVLA 167

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 9EC: 5

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 12/137 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           LC++ T ++D+  +  A  +K+I  + VG + +DI  AT+ GI V   PG +T    + A
Sbjct: 52  LCLL-TDKIDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTD---AVA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKR 171
           E T+ L+L + R+  E    I   +   P      TG  L GKT+ ++G G IGV  AKR
Sbjct: 108 EFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKR 167

Query: 172 LRPFGVKII--ATKRSW 186
           L  F VKI+    +R W
Sbjct: 168 LSSFDVKILYYDIERRW 184

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A5GFY8|SERA_PIG D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 11/128 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ S+ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 51  LIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  ++L L R+  +   ++     E+KK     G  L GK + ILG G IG E+A R+
Sbjct: 108 ELTCGMILCLARQIPQATASMKDGKWERKKF---MGTELNGKVLGILGLGRIGREVATRM 164

Query: 173 RPFGVKII 180
           + FG+K I
Sbjct: 165 QSFGMKTI 172

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|A5A6P1|SERA_PANTR D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 15/139 (10%)

Query: 51  DVIANYHLC----VVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIP 106
           ++IA    C    V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P
Sbjct: 40  ELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP 99

Query: 107 GDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGF 161
               GN+ S AELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG 
Sbjct: 100 ---NGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGL 153

Query: 162 GNIGVELAKRLRPFGVKII 180
           G IG E+A R++ FG+K I
Sbjct: 154 GRIGREVATRMQSFGMKTI 172

Pan troglodytes (taxid: 9598)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 15/139 (10%)

Query: 51  DVIANYHLC----VVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIP 106
           ++IA    C    V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P
Sbjct: 40  ELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP 99

Query: 107 GDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGF 161
               GN+ S AELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG 
Sbjct: 100 ---NGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGL 153

Query: 162 GNIGVELAKRLRPFGVKII 180
           G IG E+A R++ FG+K I
Sbjct: 154 GRIGREVATRMQSFGMKTI 172

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|P35136|SERA_BACSU D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis (strain 168) GN=serA PE=3 SV=3

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 81/151 (53%), Gaps = 11/151 (7%)

Query: 37  PSIQVDVVPI-----SDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGV 90
           P I+ D + I     +D  D +  +   +V++  ++  +  ++   +K++ + GVG++ +
Sbjct: 17  PLIESDFIEIVQKNVADAEDELHTFDALLVRSATKVTEDLFNKMTSLKIVGRAGVGVDNI 76

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPTG 148
           DI+ AT+ G+ V   P    GN  S AE T  ++  L+R   +  ++++ ++       G
Sbjct: 77  DIDEATKHGVIVINAP---NGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVG 133

Query: 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
             L GKT+ I+G G IG E+A+R R FG+ +
Sbjct: 134 SELYGKTLGIVGLGRIGSEIAQRARAFGMTV 164

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)

Query: 51  DVIANYHLC----VVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIP 106
           ++IA    C    V    ++ ++ I+ A +++++ + G G++ VD+ AATR G+ V   P
Sbjct: 40  ELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTP 99

Query: 107 GDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGF 161
               GN+ S AELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG 
Sbjct: 100 ---NGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGL 153

Query: 162 GNIGVELAKRLRPFGVKII 180
           G IG E+A R++ FG+K I
Sbjct: 154 GRIGREVATRMQSFGMKTI 172

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q5EAD2|SERA_BOVIN D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 15/139 (10%)

Query: 51  DVIANYHLC----VVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIP 106
           ++IA    C    V    ++ S+ I+ A +++++ + G G++ VD+ AATR GI V   P
Sbjct: 40  ELIAELQDCEGLIVRSATKVTSDIINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP 99

Query: 107 GDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGF 161
               GN+ S AELT  +++ L R+  +   ++     E+KK     G  L GK + ILG 
Sbjct: 100 ---NGNSLSAAELTCGMIMCLARQIPQAAASMKDGKWERKKF---MGTELNGKVLGILGL 153

Query: 162 GNIGVELAKRLRPFGVKII 180
           G IG E+A R++ FG+K I
Sbjct: 154 GRIGREVATRMQSFGMKTI 172

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|O08651|SERA_RAT D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3

 Score = 67.4 bits (163), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 9/136 (6%)

Query: 51  DVIANYHLC----VVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIP 106
           ++IA    C    V    ++ ++ I+ A +++++ + G G++ VD+ AATR G+ V   P
Sbjct: 40  ELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTP 99

Query: 107 GDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNI 164
               GN+ S AELT  +++ L R+  +   +++  K       G  L GKT+ ILG G I
Sbjct: 100 ---NGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRI 156

Query: 165 GVELAKRLRPFGVKII 180
           G E+A R++ FG+K +
Sbjct: 157 GREVAARMQAFGMKTV 172

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q61753|SERA_MOUSE D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3

 Score = 67.4 bits (163), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 9/136 (6%)

Query: 51  DVIANYHLC----VVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIP 106
           ++IA    C    V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P
Sbjct: 40  ELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP 99

Query: 107 GDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNI 164
               GN+ S AELT  +++ L R+  +   +++  K       G  L GKT+ ILG G I
Sbjct: 100 ---NGNSLSAAELTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRI 156

Query: 165 GVELAKRLRPFGVKII 180
           G E+A R++ FG+K +
Sbjct: 157 GREVATRMQSFGMKTV 172

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
224136053	343	predicted protein [Populus trichocarpa]	0.938	0.574	0.776	4e-87
118488445	343	unknown [Populus trichocarpa]	0.938	0.574	0.776	4e-87
255561522	380	phosphoglycerate dehydrogenase, putative	0.957	0.528	0.733	9e-84
363807464	391	uncharacterized protein LOC100785085 [Gl	0.914	0.491	0.723	4e-79
359493304	333	PREDICTED: d-3-phosphoglycerate dehydrog	0.890	0.561	0.737	2e-78
225460279	373	PREDICTED: d-3-phosphoglycerate dehydrog	0.961	0.541	0.712	6e-78
296089431	343	unnamed protein product [Vitis vinifera]	0.947	0.580	0.718	2e-77
357455585	382	D-3-phosphoglycerate dehydrogenase [Medi	0.895	0.492	0.702	1e-76
449503247	337	PREDICTED: d-3-phosphoglycerate dehydrog	0.904	0.563	0.715	1e-76
388510518	344	unknown [Medicago truncatula]	0.895	0.546	0.702	2e-76

>gi|224136053|ref|XP_002327369.1| predicted protein [Populus trichocarpa] gi|222835739|gb|EEE74174.1| predicted protein [Populus trichocarpa]

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 153/197 (77%), Positives = 176/197 (89%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M  +SDK+ITRVLFCGP+FPASH YTKEYLQ YP IQVD VP++ VPDVI+NY++C+VK 
Sbjct: 1   MVGNSDKHITRVLFCGPYFPASHQYTKEYLQKYPFIQVDDVPLAVVPDVISNYNICIVKN 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRL SN ISRA QMKLIMQFGVG+EGVDI+AAT+ GIKVARIPGD TGNAASCAE+ IYL
Sbjct: 61  MRLTSNIISRATQMKLIMQFGVGIEGVDIDAATKYGIKVARIPGDATGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+QK+LG P GETL GKTVFI+GFGNIG++LAKRLRPFGVKIIATK
Sbjct: 121 MLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFIMGFGNIGIDLAKRLRPFGVKIIATK 180

Query: 184 RSWASHSQVSCQSSGML 200
           RSWA HS+ S QS+G L
Sbjct: 181 RSWALHSEGSLQSNGFL 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488445|gb|ABK96037.1| unknown [Populus trichocarpa]

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 153/197 (77%), Positives = 176/197 (89%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M  +SDK+ITRVLFCGP+FPASH YTKEYLQ YP IQVD VP++ VPDVI+NY++C+VK 
Sbjct: 1   MVGNSDKHITRVLFCGPYFPASHQYTKEYLQKYPFIQVDDVPLAVVPDVISNYNICIVKN 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRL SN ISRA QMKLIMQFGVG+EGVDI+AAT+ GIKVARIPGD TGNAASCAE+ IYL
Sbjct: 61  MRLTSNIISRATQMKLIMQFGVGIEGVDIDAATKYGIKVARIPGDATGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+QK+LG P GETL GKTVFI+GFGNIG++LAKRLRPFGVKIIATK
Sbjct: 121 MLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFIMGFGNIGIDLAKRLRPFGVKIIATK 180

Query: 184 RSWASHSQVSCQSSGML 200
           RSWA HS+ S QS+G L
Sbjct: 181 RSWALHSEGSLQSNGFL 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561522|ref|XP_002521771.1| phosphoglycerate dehydrogenase, putative [Ricinus communis] gi|223538984|gb|EEF40581.1| phosphoglycerate dehydrogenase, putative [Ricinus communis]

 Score =  315 bits (806), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 149/203 (73%), Positives = 175/203 (86%), Gaps = 2/203 (0%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           MA  +   ITRVLFCGPHFPASH YTK+YLQ YP IQVD VP++DVP+VIANYH+CV KT
Sbjct: 38  MAGDNSNYITRVLFCGPHFPASHIYTKQYLQKYPFIQVDDVPLNDVPNVIANYHICVSKT 97

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
            R+DS+ ISRA QMKLIMQFGVGLEG++I+AA+RCGIKVARIPGD TGNAASCAE+ IYL
Sbjct: 98  TRIDSSIISRATQMKLIMQFGVGLEGINIDAASRCGIKVARIPGDFTGNAASCAEMAIYL 157

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQN+M+++I+QKKLG P GETLLGKTVFILG+GNIG+ELAKRL+PFGVK+IATK
Sbjct: 158 MLGLLRKQNQMQVSIKQKKLGEPIGETLLGKTVFILGYGNIGIELAKRLQPFGVKVIATK 217

Query: 184 RSWASHSQVSCQSSGMLGPLSDG 206
           R W S+  V  Q  G+  P+ +G
Sbjct: 218 RKWTSNLHVLHQQKGL--PMQNG 238

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807464|ref|NP_001242647.1| uncharacterized protein LOC100785085 [Glycine max] gi|255645066|gb|ACU23032.1| unknown [Glycine max]

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 139/192 (72%), Positives = 169/192 (88%)

Query: 6   RSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMR 65
           + ++K ITRVLFCGP FPASH YT EYLQN+  I+VDV+P+ DVP  IANYH+C+VK MR
Sbjct: 56  KDAEKQITRVLFCGPRFPASHEYTIEYLQNHSHIKVDVLPLEDVPKDIANYHVCIVKNMR 115

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           LDS  ISRA QM+LIMQ+GVGLEGVDI+AAT+ GIKVARIPGDV+GN+ASCAE+ IYLML
Sbjct: 116 LDSEIISRAVQMQLIMQYGVGLEGVDIDAATKHGIKVARIPGDVSGNSASCAEMAIYLML 175

Query: 126 GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           GLLRKQNE++++I+QKKLG P  ETLLGKT+FILGFGNIG++LAKRL+PFGVK+IA KRS
Sbjct: 176 GLLRKQNELQVSIQQKKLGEPITETLLGKTIFILGFGNIGMDLAKRLQPFGVKVIAIKRS 235

Query: 186 WASHSQVSCQSS 197
           WAS++Q + + S
Sbjct: 236 WASYAQHASKLS 247

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493304|ref|XP_003634565.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like isoform 2 [Vitis vinifera]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 163/187 (87%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C+VK+
Sbjct: 1   MVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCIVKS 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+ IYL
Sbjct: 61  MRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I+ATK
Sbjct: 121 MLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRILATK 180

Query: 184 RSWASHS 190
           RSWAS S
Sbjct: 181 RSWASQS 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460279|ref|XP_002282092.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like isoform 1 [Vitis vinifera]

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 144/202 (71%), Positives = 171/202 (84%)

Query: 1   MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCV 60
           +E M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C+
Sbjct: 28  IEKMVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCI 87

Query: 61  VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
           VK+MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+ 
Sbjct: 88  VKSMRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMA 147

Query: 121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           IYLMLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I+
Sbjct: 148 IYLMLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRIL 207

Query: 181 ATKRSWASHSQVSCQSSGMLGP 202
           ATKRSWAS S  S QS+G   P
Sbjct: 208 ATKRSWASQSLNSSQSNGFPTP 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089431|emb|CBI39250.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/199 (71%), Positives = 169/199 (84%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C+VK+
Sbjct: 1   MVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCIVKS 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+ IYL
Sbjct: 61  MRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I+ATK
Sbjct: 121 MLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRILATK 180

Query: 184 RSWASHSQVSCQSSGMLGP 202
           RSWAS S  S QS+G   P
Sbjct: 181 RSWASQSLNSSQSNGFPTP 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455585|ref|XP_003598073.1| D-3-phosphoglycerate dehydrogenase [Medicago truncatula] gi|355487121|gb|AES68324.1| D-3-phosphoglycerate dehydrogenase [Medicago truncatula]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/188 (70%), Positives = 162/188 (86%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M    ++  TRVLFCGP FP SH YT EYLQN+ SI+VDV+P+ ++P  IANYH+CVVK 
Sbjct: 45  MINDVERKTTRVLFCGPQFPCSHLYTTEYLQNHSSIKVDVLPLEEIPKAIANYHVCVVKM 104

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           M+LDSN ISRA QMKLIMQ+GVGLEGVDI+AAT+ GIKVARIP   TGN+ +CAE+ IYL
Sbjct: 105 MKLDSNIISRAVQMKLIMQYGVGLEGVDIDAATKHGIKVARIPSGGTGNSTACAEMAIYL 164

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+Q+KLG P G+TL GKT+FILGFGNIG++LA+RL+PFGVK+IATK
Sbjct: 165 MLGLLRKQNEMQISIQQRKLGEPIGDTLFGKTIFILGFGNIGIDLARRLKPFGVKVIATK 224

Query: 184 RSWASHSQ 191
           RSWAS++Q
Sbjct: 225 RSWASYAQ 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503247|ref|XP_004161907.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like [Cucumis sativus]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 136/190 (71%), Positives = 160/190 (84%)

Query: 1   MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCV 60
           ME     S K + RVLFCG  FP+SHNYT EYL NYP +QVD+VP  DVP VI+NYH+CV
Sbjct: 1   MERTHEDSSKGLIRVLFCGSQFPSSHNYTCEYLLNYPFVQVDIVPCEDVPKVISNYHICV 60

Query: 61  VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
           VK M+ D + ISRA+QMKLI+QFGVGL+GVD++AAT+ GIKVARIP  VTGNA SCAE+ 
Sbjct: 61  VKMMKFDFDLISRASQMKLIVQFGVGLDGVDVDAATKRGIKVARIPSGVTGNALSCAEMA 120

Query: 121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           IYLMLGLLRKQ EM++A++ K LGVPTG+TLLGKTVFI+GFGNIG+ELAKRLRPFGV+II
Sbjct: 121 IYLMLGLLRKQKEMQIAVDHKMLGVPTGDTLLGKTVFIMGFGNIGLELAKRLRPFGVRII 180

Query: 181 ATKRSWASHS 190
           ATKRSW  +S
Sbjct: 181 ATKRSWTENS 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510518|gb|AFK43325.1| unknown [Medicago truncatula]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 132/188 (70%), Positives = 162/188 (86%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M    ++  TRVLFCGP FP SH YT EYLQN+ SI+VDV+P+ ++P  IANYH+CVVK 
Sbjct: 7   MINDVERKTTRVLFCGPQFPCSHLYTTEYLQNHSSIKVDVLPLEEIPKAIANYHVCVVKM 66

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           M+LDSN ISRA QMKLIMQ+GVGLEGVDI+AAT+ GIKVARIP   TGN+ +CAE+ IYL
Sbjct: 67  MKLDSNIISRAVQMKLIMQYGVGLEGVDIDAATKHGIKVARIPSGGTGNSTACAEMAIYL 126

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+Q+KLG P G+TL GKT+FILGFGNIG++LA+RL+PFGVK+IATK
Sbjct: 127 MLGLLRKQNEMQISIQQRKLGEPIGDTLFGKTIFILGFGNIGIDLARRLKPFGVKVIATK 186

Query: 184 RSWASHSQ 191
           RSWAS++Q
Sbjct: 187 RSWASYAQ 194

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2207046	373	AT1G72190 [Arabidopsis thalian	0.885	0.498	0.623	3.4e-61
TIGR_CMR|CHY_2698	525	CHY_2698 "D-3-phosphoglycerate	0.580	0.232	0.359	1.1e-12
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.542	0.347	0.357	1.6e-12
UNIPROTKB|E1C7Y3	525	PHGDH "Uncharacterized protein	0.571	0.228	0.344	1.8e-12
ZFIN|ZDB-GENE-030131-647	528	phgdh "phosphoglycerate dehydr	0.585	0.232	0.341	3.9e-12
UNIPROTKB|Q5SZU1	499	PHGDH "D-3-phosphoglycerate de	0.557	0.234	0.359	7.3e-12
UNIPROTKB|O43175	533	PHGDH "D-3-phosphoglycerate de	0.557	0.219	0.359	8.3e-12
UNIPROTKB|A5GFY8	533	PHGDH "D-3-phosphoglycerate de	0.557	0.219	0.367	8.3e-12
MGI|MGI:1355330	533	Phgdh "3-phosphoglycerate dehy	0.571	0.225	0.344	1.1e-11
RGD|61987	533	Phgdh "phosphoglycerate dehydr	0.571	0.225	0.336	1.1e-11

TAIR|locus:2207046 AT1G72190 [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 116/186 (62%), Positives = 147/186 (79%)

Query:     1 MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPXXXXXXXXXXXXXXXXANYHLCV 60
             +E +    D ++TRVLFCGPHFP S+N+T+EYLQ YP                 NYH+CV
Sbjct:    40 IERIVEKEDMHVTRVLFCGPHFPDSYNFTREYLQPYPFIKVDVVHYRDVPEVIKNYHICV 99

Query:    61 VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
               TM++DSN ISRA+ +KLIMQ+GVGL+GVDI+AAT+ GIKVARIP + TGNAASC+E+ 
Sbjct:   100 AMTMQMDSNVISRASNIKLIMQYGVGLDGVDIDAATKHGIKVARIPSEGTGNAASCSEMA 159

Query:   121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
             IYLMLGLL+KQNEM++++  + LG PTG+TLLGKTVFILG+GNIG+ELAKRL+PFG ++I
Sbjct:   160 IYLMLGLLKKQNEMQISLRNRLLGEPTGDTLLGKTVFILGYGNIGIELAKRLKPFGSRVI 219

Query:   181 ATKRSW 186
             ATKR W
Sbjct:   220 ATKRFW 225

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 177 (67.4 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 46/128 (35%), Positives = 73/128 (57%)

Query:    56 YHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAA 114
             Y   +V++  ++ +  I  A  +K+I + GVG++ +D+ AA++ GI V   P    GN  
Sbjct:    42 YDALIVRSETKVTARIIEAAENLKIIGRAGVGVDNIDLAAASKKGIIVVNSP---EGNTI 98

Query:   115 SCAELTIYLMLGLLRKQNEMRMAIEQKK-LGVP-TGETLLGKTVFILGFGNIGVELAKRL 172
             + AE T  LM+ LLR   +   A+++ K L    TG  L GKTV I+G G IG  +AKR+
Sbjct:    99 AAAEHTFALMMALLRNIPQAHAALKEGKWLRKEFTGYELRGKTVGIIGLGRIGTAVAKRV 158

Query:   173 RPFGVKII 180
             + F  ++I
Sbjct:   159 KAFETRVI 166

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 171 (65.3 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 44/123 (35%), Positives = 71/123 (57%)

Query:    63 TMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTI 121
             T ++D   ++RA +Q++LI QFG G++ +D+ +A + GI V   PG +T + A  A   +
Sbjct:    57 TDKIDGRLMARAGDQLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVA---M 113

Query:   122 YLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGNIGVELAKRLRPFG 176
              L+L + R+ +E    +E  K     PT   G  L GK + I+G G IG  +A+R R FG
Sbjct:   114 ALILAVPRRMHEGVQIMEAGKFDGWTPTWMMGRRLSGKRLGIIGMGRIGQAVARRARAFG 173

Query:   177 VKI 179
             ++I
Sbjct:   174 MQI 176

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

UNIPROTKB|E1C7Y3 PHGDH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 43/125 (34%), Positives = 74/125 (59%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ +  A +++++ + G G++ VD++AATR G+ V   P   TGN+ S A
Sbjct:    51 LIVRSATKVSADVLEAAGRLQVVGRAGTGVDNVDVDAATRKGVLVMNTP---TGNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPF 175
             ELT  ++L L R+  +   ++++ K       G  L GKT+ +LG G IG E+A R++ F
Sbjct:   108 ELTCGMILCLARQIPQAAASMKEGKWDRKKYMGMELNGKTLGVLGLGRIGREVATRMQAF 167

Query:   176 GVKII 180
             G+K I
Sbjct:   168 GMKTI 172

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

ZFIN|ZDB-GENE-030131-647 phgdh "phosphoglycerate dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 172 (65.6 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 44/129 (34%), Positives = 75/129 (58%)

Query:    55 NYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNA 113
             NY   +V++  ++ ++ I+  + +K+I + G G++ VD++AAT+ GI V   P   +GN 
Sbjct:    47 NYDGLIVRSATKVTADVINAGSSLKIIGRAGTGVDNVDVDAATKRGIIVMNTP---SGNT 103

Query:   114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKR 171
              S AELT  L++ L R   +  ++++  K       G  L GK + I+G G IG E+A R
Sbjct:   104 LSAAELTCALVMSLSRHIPQAVISMKDGKWDRKKFMGSELYGKVLGIVGLGRIGKEVATR 163

Query:   172 LRPFGVKII 180
             ++ FG+K I
Sbjct:   164 MQSFGMKTI 172

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5SZU1 PHGDH "D-3-phosphoglycerate dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 7.3e-12, P = 7.3e-12
 Identities = 46/128 (35%), Positives = 74/128 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct:    17 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAA 73

Query:   118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
             ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct:    74 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 130

Query:   173 RPFGVKII 180
             + FG+K I
Sbjct:   131 QSFGMKTI 138

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|O43175 PHGDH "D-3-phosphoglycerate dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 8.3e-12, P = 8.3e-12
 Identities = 46/128 (35%), Positives = 74/128 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct:    51 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
             ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct:   108 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 164

Query:   173 RPFGVKII 180
             + FG+K I
Sbjct:   165 QSFGMKTI 172

GO:0051287 "NAD binding" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0009055 "electron carrier activity" evidence=TAS

GO:0007420 "brain development" evidence=TAS

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006564 "L-serine biosynthetic process" evidence=TAS

GO:0008652 "cellular amino acid biosynthetic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|A5GFY8 PHGDH "D-3-phosphoglycerate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 8.3e-12, P = 8.3e-12
 Identities = 47/128 (36%), Positives = 73/128 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ S+ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct:    51 LIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
             ELT  ++L L R+  +   ++     E+KK     G  L GK + ILG G IG E+A R+
Sbjct:   108 ELTCGMILCLARQIPQATASMKDGKWERKKF---MGTELNGKVLGILGLGRIGREVATRM 164

Query:   173 RPFGVKII 180
             + FG+K I
Sbjct:   165 QSFGMKTI 172

GO:0031175 "neuron projection development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

MGI|MGI:1355330 Phgdh "3-phosphoglycerate dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 168 (64.2 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 43/125 (34%), Positives = 72/125 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct:    51 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPF 175
             ELT  +++ L R+  +   +++  K       G  L GKT+ ILG G IG E+A R++ F
Sbjct:   108 ELTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSF 167

Query:   176 GVKII 180
             G+K +
Sbjct:   168 GMKTV 172

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISO;TAS

GO:0006541 "glutamine metabolic process" evidence=IMP

GO:0006544 "glycine metabolic process" evidence=IMP

GO:0006563 "L-serine metabolic process" evidence=IMP

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IMP

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IMP

GO:0021510 "spinal cord development" evidence=IMP

GO:0021782 "glial cell development" evidence=IMP

GO:0021915 "neural tube development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0022402 "cell cycle process" evidence=IMP

GO:0031175 "neuron projection development" evidence=IMP

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO;TAS

RGD|61987 Phgdh "phosphoglycerate dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 42/125 (33%), Positives = 72/125 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ I+ A +++++ + G G++ VD+ AATR G+ V   P    GN+ S A
Sbjct:    51 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPN---GNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPF 175
             ELT  +++ L R+  +   +++  K       G  L GKT+ ILG G IG E+A R++ F
Sbjct:   108 ELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAF 167

Query:   176 GVKII 180
             G+K +
Sbjct:   168 GMKTV 172

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006541 "glutamine metabolic process" evidence=IEA;ISO

GO:0006544 "glycine metabolic process" evidence=IEA;ISO

GO:0006563 "L-serine metabolic process" evidence=ISO

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA;ISO

GO:0009070 "serine family amino acid biosynthetic process" evidence=TAS

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA;ISO

GO:0010468 "regulation of gene expression" evidence=IEA;ISO

GO:0019530 "taurine metabolic process" evidence=IEA;ISO

GO:0021510 "spinal cord development" evidence=IEA;ISO

GO:0021782 "glial cell development" evidence=IEA;ISO

GO:0021915 "neural tube development" evidence=IEA;ISO

GO:0022008 "neurogenesis" evidence=ISO

GO:0022402 "cell cycle process" evidence=IEA;ISO

GO:0031175 "neuron projection development" evidence=IEA;ISO

GO:0051287 "NAD binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	1e-122
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	7e-60
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	3e-29
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	7e-25
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	7e-25
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	2e-24
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	3e-24
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	2e-23
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	7e-23
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	7e-22
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	1e-21
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	9e-21
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	2e-20
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	6e-20
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	1e-19
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	1e-18
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	2e-18
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	6e-18
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	2e-17
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	2e-16
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	6e-16
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	8e-16
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	1e-15
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	1e-15
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	1e-15
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	2e-14
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	1e-13
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	4e-13
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	6e-13
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	2e-12
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	2e-12
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	6e-12
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	1e-11
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	1e-10
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	5e-10
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	8e-10
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	1e-09
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	1e-09
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	2e-09
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	1e-08
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	4e-08
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	7e-08
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	2e-07
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	8e-07
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	5e-06
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	1e-05
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	1e-05
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	3e-05
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	8e-05
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	9e-05
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	3e-04
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	0.001
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	0.002

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  348 bits (896), Expect = e-122
 Identities = 131/195 (67%), Positives = 160/195 (82%)

Query: 1   MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCV 60
           ++     SD   TRVLFCGP FPAS++YT+EYLQ YP IQVD V   DVPDVIANY +CV
Sbjct: 7   IDKRVHHSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICV 66

Query: 61  VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
            K MRLD++ I+RA+QMKLIMQFGVGLEGVD++AAT+ GIKVARIP + TGNAASCAE+ 
Sbjct: 67  PKMMRLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMA 126

Query: 121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           IYLMLGLLRKQNEM+++++ ++LG P G+TL GKTVFILG+G IG+ELAKRLRPFGVK++
Sbjct: 127 IYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLL 186

Query: 181 ATKRSWASHSQVSCQ 195
           AT+RSW S  +    
Sbjct: 187 ATRRSWTSEPEDGLL 201

Length = 347

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  189 bits (483), Expect = 7e-60
 Identities = 71/180 (39%), Positives = 99/180 (55%), Gaps = 8/180 (4%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVP-DVIANYHLCVVKTMR-LDSNCI 71
           +VLF GP FP +    +  L   P ++V      D    ++A+  + V    + +D+  +
Sbjct: 1   KVLFLGPEFPDAEELLRALLPPAPGVEVVTAAELDEEAALLADADVLVPGMRKVIDAELL 60

Query: 72  SRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQ 131
           + A +++LI Q GVGL+GVD+ AAT  GI VA IPG   GNA S AE  + LML LLR+ 
Sbjct: 61  AAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPG---GNAESVAEHAVMLMLALLRRL 117

Query: 132 NEMRMAIEQKKLGVPTGE---TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188
            E    +   + G P G     L GKTV I+G GNIG  +A+RLR FGV++I   R    
Sbjct: 118 PEADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDP 177

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  109 bits (276), Expect = 3e-29
 Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 3/111 (2%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           ++ A ++K+I ++GVG + +D+ AA + GI V   PG    N+ S AELTI LML L R+
Sbjct: 63  LAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPG---ANSNSVAELTIGLMLALARQ 119

Query: 131 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
             +    +       P G  L GKT+ I+G G IG  +A+RL  FG+K++A
Sbjct: 120 IPQADREVRAGGWDRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLA 170

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 98.6 bits (247), Expect = 7e-25
 Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 20/177 (11%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKTM-RLDSN 69
           +VL   P          E L+    I+VDV P      +  +IA+    +V++  ++ + 
Sbjct: 1   KVLVTDPIDEEGL----ELLREA-GIEVDVAPGLSEEELLAIIADADALIVRSATKVTAE 55

Query: 70  CISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR 129
            I  A ++K+I + GVG++ +D+ AAT  GI V   PG    N  S AE TI LML L R
Sbjct: 56  VIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPG---ANTISVAEHTIALMLALAR 112

Query: 130 KQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
              +   ++     ++KK     G  L GKT+ I+G G IG E+A+R R FG+K++A
Sbjct: 113 NIPQADASLRAGKWDRKKF---MGVELRGKTLGIVGLGRIGREVARRARAFGMKVLA 166

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score = 98.9 bits (247), Expect = 7e-25
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 13/157 (8%)

Query: 39  IQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRC 98
                +   ++ + +A+    +V    +    ++ A  +K I + G G++ +D+ AAT+ 
Sbjct: 29  PDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKR 88

Query: 99  GIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTGETLLGK 154
           GI V   PG   GNA S AEL + L+L L R+        R     +K     G  L GK
Sbjct: 89  GILVVNAPG---GNAISVAELVLALLLALARRIPDADASQRRGEWDRKAF--RGTELAGK 143

Query: 155 TVFILGFGNIGVELAKRLRPFGVKIIA----TKRSWA 187
           TV I+G G IG  +AKRL+ FG+K+I     + R  A
Sbjct: 144 TVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERA 180

Length = 324

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score = 97.7 bits (244), Expect = 2e-24
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 10/154 (6%)

Query: 39  IQVDVVPISDVPDVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATR 97
            + D+ P +++ + + +   +      R+D+  + +   +KLI     G + VD+ AA  
Sbjct: 28  YEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKE 87

Query: 98  CGIKVARIPGDVTGNAASCAELTIYLMLGLLRK--QNEMRMA----IEQKKLGVPTGETL 151
            GI V  +PG  T    + AE  + L+L L R+  + + R+               G  L
Sbjct: 88  RGITVTNVPGYST---EAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDL 144

Query: 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
            GKT+ I+G G IG  +A+RL+ FG+K++   RS
Sbjct: 145 RGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRS 178

Length = 324

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score = 96.5 bits (241), Expect = 3e-24
 Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 8/119 (6%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           +++A ++K I   G G++ +D++AA + GI V  +PG    NA + AE  + L+L LLR+
Sbjct: 58  LAKAPKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPG---ANAEAVAEHALGLLLALLRR 114

Query: 131 ----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
                  +R        G P G  L GKTV I+G G IG  +AKRL+ FG+K++   R+
Sbjct: 115 LPRADAAVRRGWGWLWAGFP-GYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRT 172

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score = 94.9 bits (237), Expect = 2e-23
 Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 16/161 (9%)

Query: 31  EYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVG 86
           E L+     +VD  P+     + + I +Y + +V++  ++    I  A  +K+I + GVG
Sbjct: 15  EKLEE-AGFEVDYEPLIAKEELLEKIKDYDVLIVRSRTKVTKEVIDAAKNLKIIARAGVG 73

Query: 87  LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMRMAI-EQK 141
           L+ +D+  A + GIKV   PG    ++ S AEL I LML L R       EM++    +K
Sbjct: 74  LDNIDVEYAKKKGIKVINTPG---ASSNSVAELVIGLMLSLARFIHRANREMKLGKWNKK 130

Query: 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
           K     G  L GKT+ I+GFG IG E+AK  R  G+ +IA 
Sbjct: 131 KY---KGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAY 168

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score = 93.1 bits (232), Expect = 7e-23
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 13/163 (7%)

Query: 26  HNYTKEYLQNYPSIQV-DVVPISDVPDVIANYH-LCVVKTMRLDSNCISRANQMKLIMQF 83
                E L+    ++V D +   ++ +   +   L V  T  + +  +  A  +K+I + 
Sbjct: 8   RPEELELLKEGGEVEVHDELLTEELLEAAKDADALIVRSTTPVTAEVLEAAPGLKVIARR 67

Query: 84  GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL 143
           GVG++ +D++AAT  GI V  +PG    +  S AELT+ L+L L R+  E   A    + 
Sbjct: 68  GVGVDNIDLDAATERGILVTNVPG---YSTESVAELTVGLILALARRIPE---ADASVRA 121

Query: 144 GV-----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           G      P G  L GKT+ ++G G IG   A   +  G+ ++A
Sbjct: 122 GDWKKGGPIGLELYGKTLGVIGGGGIGGIGAAIAKALGMGVVA 164

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 92.4 bits (231), Expect = 7e-22
 Identities = 62/164 (37%), Positives = 90/164 (54%), Gaps = 23/164 (14%)

Query: 31  EYLQNYPSIQVDVVPISDVP---DVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVG 86
           E L++ P ++VDV    D     ++I +Y   +V++  ++ +  +  A  +K+I + GVG
Sbjct: 15  EILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVG 74

Query: 87  LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR---------KQNEMRMA 137
           ++ VD+ AATR GI V   P   TGN  S AE TI LML L R         K  +    
Sbjct: 75  VDNVDVPAATRRGIIVVNAP---TGNTISAAEHTIALMLALARNIPQAHASLKAGKW--- 128

Query: 138 IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
            E+KK     G  L GKT+ I+G G IG E+AKR + FG+K+IA
Sbjct: 129 -ERKKF---MGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIA 168

Length = 526

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 90.0 bits (224), Expect = 1e-21
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L    +  +D   I  A  +K+I  +G G + +D++ A   GI V   P   T      A
Sbjct: 47  LITPLSTPVDKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVST---EPTA 103

Query: 118 ELTIYLMLGLLRKQNEM-RMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  L+L L R+  E  R+      LG       G  L GKT+ I+G G IG  +A+R 
Sbjct: 104 ELTFGLILALARRIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRA 163

Query: 173 RPFGVKIIATKR 184
           + FG+KI+   R
Sbjct: 164 KAFGMKILYYNR 175

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score = 88.9 bits (221), Expect = 9e-21
 Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 28/181 (15%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP-------ISDVPDVIANYHLCVVKTM-R 65
           +VL   P          + L++   ++VDV         +  +PD    Y   +V++  +
Sbjct: 1   KVLIADP----ISPDGIDILED-VGVEVDVQTGLSREELLEIIPD----YDALIVRSATK 51

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           +    I+ A ++K+I + GVG++ +DI AAT  GI V   P   TGN  S AE  + ++L
Sbjct: 52  VTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAP---TGNTISAAEHALAMLL 108

Query: 126 GLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
              R   +   ++     ++K      G  L GKT+ ++G G IG  +AKR + FG+K++
Sbjct: 109 AAARNIPQADASLKEGEWDRKAF---MGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVL 165

Query: 181 A 181
           A
Sbjct: 166 A 166

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score = 86.3 bits (215), Expect = 2e-20
 Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 8/133 (6%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L    T ++D+  +  A  +K+I  + VG + +D++AA   GI V   P  +T    + A
Sbjct: 47  LLCTLTDKIDAELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLT---DATA 103

Query: 118 ELTIYLMLGLLRKQNEM-RMAIEQKKLGV-PT---GETLLGKTVFILGFGNIGVELAKRL 172
           +L   L+L   R+  E  R     +  G  PT   G  L GKT+ I+G G IG  +A+R 
Sbjct: 104 DLAFALLLAAARRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRA 163

Query: 173 RPFGVKIIATKRS 185
           + FG+KI+   RS
Sbjct: 164 KGFGMKILYHNRS 176

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 85.3 bits (212), Expect = 6e-20
 Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 15/140 (10%)

Query: 51  DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGV---GLEGVDINAATRCGIKVARIPG 107
           + + +  + +     +    I  A ++KLI   GV   G E VD+ AAT  GI V   PG
Sbjct: 42  EALKDADILITHFAPVTKKVIEAAPKLKLI---GVCRGGPENVDVEAATERGIPVLNTPG 98

Query: 108 DVTGNAASCAELTIYLMLGLLRK----QNEMRMAIEQKKL--GVPTGETLLGKTVFILGF 161
               NA + AE T+ LML   R        ++    +K        G  L GKTV I+GF
Sbjct: 99  R---NAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGF 155

Query: 162 GNIGVELAKRLRPFGVKIIA 181
           G IG  +AKRL+ FG +++ 
Sbjct: 156 GAIGRRVAKRLKAFGAEVLV 175

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 84.7 bits (210), Expect = 1e-19
 Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 6/109 (5%)

Query: 78  KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA 137
           KLI + G+G + VD+ AAT  G+ V R+PG V     + AE  + L+L +LRK N+   A
Sbjct: 71  KLIARHGIGYDNVDLKAATEHGVIVTRVPGAV--ERDAVAEHAVALILTVLRKINQASEA 128

Query: 138 IEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRP-FGVKIIAT 182
           +++ K        G  L GKTV I+G+GNIG  +A+ L+  F  K++A 
Sbjct: 129 VKEGKWTERANFVGHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAY 177

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 82.0 bits (203), Expect = 1e-18
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 19/154 (12%)

Query: 39  IQVDVVPIS---DVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINA 94
            +VD  P     ++  +I  Y   ++++   +D   I +A  +K I + G GLE +D+  
Sbjct: 21  FEVDYDPTISREEILAIIPQYDGLIIRSRFPIDKEFIEKATNLKFIARAGAGLENIDLEY 80

Query: 95  ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN----EMRMAI---EQKKLGVPT 147
           A   GI++   P    GN  +  E  + ++L L  K N    E+R  I   E  +     
Sbjct: 81  AKEKGIELFNAP---EGNRDAVGEHALGMLLALFNKLNRADQEVRNGIWDREGNR----- 132

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           G  L+GKTV I+G+GN+G   AKRL  FG K+IA
Sbjct: 133 GVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIA 166

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 81.1 bits (201), Expect = 2e-18
 Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 23/162 (14%)

Query: 36  YPSIQVDVVPISD--VPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN 93
              +  +V  + D    + + +  + V   +  +   ++   ++KLI     G++ + + 
Sbjct: 19  LEGLYAEVPELPDEAAEEALEDADVLVGGRLTKEEA-LAALKRLKLIQVPSAGVDHLPL- 76

Query: 94  AATRCGIKVARIPGDVT-----GNAASCAELTIYLMLGLLRK----QNEMRMAI-EQKKL 143
                     R+P  V      GN+ + AE  + L+L L ++     N++R  I   +  
Sbjct: 77  ---------ERLPEGVVVANNHGNSPAVAEHALALILALAKRIVEYDNDLRRGIWHGRAG 127

Query: 144 GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
             P  + L GKTV ILG+G+IG E+A+ L+ FG+++I   RS
Sbjct: 128 EEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRS 169

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score = 79.4 bits (197), Expect = 6e-18
 Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 8/120 (6%)

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
             L +  I+    ++LI  FGVG +G+D++AA   GI+V   PG         A+L + L
Sbjct: 52  TGLSAALIAALPALELIASFGVGYDGIDLDAARARGIRVTNTPGV---LTDDVADLAVGL 108

Query: 124 MLGLLRK--QNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
           +L +LR+    + R     +  K   P    + GK V I+G G IG  +A+RL  FG++I
Sbjct: 109 LLAVLRRIPAAD-RFVRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEI 167

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score = 78.7 bits (195), Expect = 2e-17
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 13/115 (11%)

Query: 78  KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA 137
           K+I   G G + +D++A T+ GI+V+  PG V     + A+  ++L+LG LR  +    +
Sbjct: 78  KIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVD---EATADTALFLILGALRNFSRAERS 134

Query: 138 IEQKKLGVPTGETLL-------GKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
               + G   G   L       GKT+ ILG G IG  +A++   FG+KII   RS
Sbjct: 135 A---RAGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRS 186

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score = 75.6 bits (187), Expect = 2e-16
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 20/138 (14%)

Query: 51  DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG--- 107
           D +   +        + +  I    ++K+I+++GVG++ VD+ AAT  GI V  +P    
Sbjct: 46  DALLVQYA------PVTAEVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCT 99

Query: 108 -DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL---GKTVFILGFGN 163
            +V       A+  + L+L L RK   +  A+         G  +    G T+ ++GFG 
Sbjct: 100 EEV-------ADHALALILALARKLPFLDRAVRAGGWDWTVGGPIRRLRGLTLGLVGFGR 152

Query: 164 IGVELAKRLRPFGVKIIA 181
           IG  +AKR + FG ++IA
Sbjct: 153 IGRAVAKRAKAFGFRVIA 170

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score = 74.4 bits (183), Expect = 6e-16
 Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 15/151 (9%)

Query: 44  VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVA 103
           V +  V DV A   L  + + R+D      A +++++  + VG + +D+  ATR GI V 
Sbjct: 38  VLLEKVRDVDA---LVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVT 94

Query: 104 RIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI---EQKKLGVP------TGETLLGK 154
             PG +T  A   A+    L+L   R+  E    +   E K+ GV        G  + GK
Sbjct: 95  NTPGVLT-EAT--ADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGK 151

Query: 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           T+ I+GFG IG  +A+R + FG++I+   R+
Sbjct: 152 TIGIIGFGRIGQAVARRAKGFGMRILYYSRT 182

Length = 333

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score = 73.7 bits (182), Expect = 8e-16
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 20/138 (14%)

Query: 60  VVKTMR----LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAAS 115
            +  MR      +  + R   +KL++  G+    +D+ AA   GI V    G  T    +
Sbjct: 49  AIVLMRERTPFPAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGGPT----A 104

Query: 116 CAELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171
            AELT  L+L L R        +R    Q  LG      L GKT+ I+G G IG  +A+ 
Sbjct: 105 TAELTWALILALARNLPEEDAALRAGGWQTTLGT----GLAGKTLGIVGLGRIGARVARI 160

Query: 172 LRPFGVKIIATKRSWASH 189
            + FG+++IA    W+S+
Sbjct: 161 GQAFGMRVIA----WSSN 174

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 73.4 bits (181), Expect = 1e-15
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 16/120 (13%)

Query: 74  ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK--- 130
           A  +K I + G G+  +D++AA++ GI V   PG    NA + AEL I +ML L R    
Sbjct: 48  APSLKAIARAGAGVNNIDVDAASKRGIVVFNTPG---ANANAVAELVIAMMLALSRNIIQ 104

Query: 131 ---------QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                     +++   +E+ K      E L GKT+ ++G GNIG  +A      G+K+I 
Sbjct: 105 AIKWVTNGDGDDISKGVEKGKKQFVGTE-LRGKTLGVIGLGNIGRLVANAALALGMKVIG 163

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 16/179 (8%)

Query: 13  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHL-------CVVKTMR 65
            +VL    +        KE L+      VDV  ++ + +      L           T +
Sbjct: 1   MKVLIYD-YRDDELEIEKEILKAGG---VDVEIVTYLLNDDETAELAKGADAILTAFTDK 56

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           +D+  + +A  +K I     G + +D++ A   GI V  +P        + AE TI L+L
Sbjct: 57  IDAELLDKAPGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPN---AVAEHTIALIL 113

Query: 126 GLLRKQ--NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
            LLR +   + R   +  +     G  L  +TV ++G G IG  +A+R + FG+K+IA 
Sbjct: 114 ALLRNRKYIDERDKNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAY 172

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 73.3 bits (181), Expect = 1e-15
 Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 8/167 (4%)

Query: 21  HFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLI 80
             P    + +      P  ++ VV   ++ + +A+    V+         +  A +++ I
Sbjct: 6   LSPLDDEHLERLRAAAPGAELRVVTAEELTEELADAD--VLLGNPPLPELLPAAPRLRWI 63

Query: 81  MQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLRKQNEMRMAIE 139
                G++ +         + +        G      AE  +  ML   RK         
Sbjct: 64  QSTSAGVDALLFPELLERDVVLTN----ARGIFGPPIAEYVLGYMLAFARKLPRYARNQA 119

Query: 140 QKK-LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           +++         L GKTV I+G G+IG E+A+R + FG+++I  +RS
Sbjct: 120 ERRWQRRGPVRELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRS 166

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 7/127 (5%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L      R+D++ +    ++K+I     G +  D+ A T  GI V  +P  +T      A
Sbjct: 48  LMAFMPDRIDADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLT---EPTA 104

Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT--GETLLGKTVFILGFGNIGVELAKRLR 173
           ELTI L++GL R        +   K G   P   G  L GKTV ILG G +G  +A+RL 
Sbjct: 105 ELTIGLLIGLGRHILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLS 164

Query: 174 PFGVKII 180
            FG  ++
Sbjct: 165 GFGATLL 171

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 47/141 (33%), Positives = 66/141 (46%), Gaps = 24/141 (17%)

Query: 52  VIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG 111
           +IAN        M L    I     +K+I     G++ VD+ A    GI V+        
Sbjct: 53  MIAN--------MPLPGEVIEACKNLKMISVAFTGVDHVDLEACKERGITVS-------- 96

Query: 112 NAA-----SCAELTIYLMLGLLRK--QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNI 164
           NAA     + AELTI L + LLR     +  +     K G+  G  L GKTV I+G G I
Sbjct: 97  NAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAGGTKAGL-IGRELAGKTVGIVGTGAI 155

Query: 165 GVELAKRLRPFGVKIIATKRS 185
           G+ +A+  + FG K++A  RS
Sbjct: 156 GLRVARLFKAFGCKVLAYSRS 176

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 64.4 bits (158), Expect = 4e-13
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 121 IYLMLGLLRKQNEMRMAIEQKKL--GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
           + L+L L R+  E    +   +       G  L GKTV I+G G IG  +A+RL+ FG+K
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMK 60

Query: 179 IIATKRS 185
           +IA  R 
Sbjct: 61  VIAYDRY 67

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score = 66.2 bits (162), Expect = 6e-13
 Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 11/120 (9%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 129
           I++A  +KL +  G+G + VD+ AA   GI VA    +VTG N  S AE  + ++L L+R
Sbjct: 79  IAKAKNLKLALTAGIGSDHVDLQAANDRGITVA----EVTGSNVVSVAEHVVMMILILVR 134

Query: 130 K-QNEMRMAIEQK----KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
                   AIE       +     + L GKTV  +G G IG+ + +RL+PF V ++   R
Sbjct: 135 NYVPGHEQAIEGGWNVADVVKRAYD-LEGKTVGTVGAGRIGLRVLRRLKPFDVHLLYYDR 193

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 113 AASCAELTIYLMLGLLRKQNEMRMAIE-QKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171
           A + AE  + L+L  LR+      A              L G TV I+G G IG  L   
Sbjct: 84  AETVAEHALALLLAGLRQLPARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPL 143

Query: 172 LRPFGVKIIATKRS 185
           L PFG K+IA  RS
Sbjct: 144 LAPFGAKVIAVNRS 157

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 64.0 bits (157), Expect = 2e-12
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 13/130 (10%)

Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
            LD+  +++   +KLI     G   VD+ AA   GI V  +PG  T    S A+ T  L+
Sbjct: 54  VLDAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYST---DSVAQHTFALL 110

Query: 125 LGLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 175
           L L R        ++  +            P  E L GKT+ I+G+GNIG  +A+  R F
Sbjct: 111 LALARLVAYHNDVVKAGEWQKSPDFCFWDYPIIE-LAGKTLGIIGYGNIGQAVARIARAF 169

Query: 176 GVKIIATKRS 185
           G+K++  +R 
Sbjct: 170 GMKVLFAERK 179

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 63.2 bits (154), Expect = 6e-12
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 15/122 (12%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 129
           I++A  +KL +  G+G + VD+ AA+  GI VA    +VTG N+ S AE  + ++L L+R
Sbjct: 109 IAKAPNLKLAITAGIGSDHVDLQAASEHGITVA----EVTGSNSISVAEHVVMMILALVR 164

Query: 130 KQNEMRMAIEQKKLG-------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
                  +  Q   G       V     L G TV I+G G IG+ + +RL+PF VK+  T
Sbjct: 165 NYEP---SHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT 221

Query: 183 KR 184
            R
Sbjct: 222 DR 223

Length = 385

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 11/129 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           + V    RLD+  + +  ++KLI     G + +D+ A    GI V  +P    G A + A
Sbjct: 45  ISVFVYSRLDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPD--YGEA-TVA 101

Query: 118 ELTIYLMLGLLRKQNEM-----RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           E    L+L L RK  E      R    Q  L    G  L GKT+ ++G G IG  +A+  
Sbjct: 102 EHAFALLLALSRKLREAIERTRRGDFSQAGL---RGFELAGKTLGVVGTGRIGRRVARIA 158

Query: 173 RPFGVKIIA 181
           R FG+K++A
Sbjct: 159 RGFGMKVLA 167

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 6/99 (6%)

Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM--RMAIEQKK 142
           +G + +D++AA   GIKV     +VT +  S A+ T+ LML  LRK  ++  R  +    
Sbjct: 77  IGYDHIDLDAAKELGIKV----SNVTYSPNSVADYTVMLMLMALRKYKQIMKRAEVNDYS 132

Query: 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           LG   G  L   TV ++G G IG  + K L  FG KI+A
Sbjct: 133 LGGLQGRELRNLTVGVIGTGRIGQAVIKNLSGFGCKILA 171

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 57.5 bits (140), Expect = 5e-10
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 23/129 (17%)

Query: 65  RLDSNCISR--ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAAS---CAEL 119
            LD+  + +     +KLI     G   VD+ AA   GI V R+P      A S    AE 
Sbjct: 55  DLDAPVLEKLAELGVKLIALRCAGFNNVDLKAAKELGITVVRVP------AYSPYAVAEH 108

Query: 120 TIYLMLGLLRK----QNEMRM---AIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
            + L+L L RK     N +R    +++    G+  G  L GKTV ++G G IG   A+ L
Sbjct: 109 AVALLLALNRKIHRAYNRVREGNFSLD----GL-LGFDLHGKTVGVIGTGKIGQAFARIL 163

Query: 173 RPFGVKIIA 181
           + FG +++A
Sbjct: 164 KGFGCRVLA 172

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score = 56.8 bits (138), Expect = 8e-10
 Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 10/114 (8%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           +++   +K I  +  G++ + +    + GI +    G    ++   AE  +  +L + + 
Sbjct: 55  LAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSG---IHSIPIAEWIVGYILEIYKG 111

Query: 131 QNEMRMAIEQKK----LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
              ++ A + +K        +   L GKT+  LG G+IG E+AKRL+ FG+K+I
Sbjct: 112 ---LKKAYKNQKEKKWKMDSSLLELYGKTILFLGTGSIGQEIAKRLKAFGMKVI 162

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 102 VARIPGDVT-GNA-----ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKT 155
           +  +P  VT  NA     AS AEL + L+L  LR       A  + +       +L  + 
Sbjct: 75  LPLLPEGVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQARGRWEPRRTPSLADRR 134

Query: 156 VFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           V I+G+G+IG  + +RL PF V++    R+
Sbjct: 135 VLIVGYGSIGRAIERRLAPFEVRVTRVART 164

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 20/144 (13%)

Query: 46  ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI 105
           +      I+N      K   LD+  ++ A Q+KLI+    G   VD+ AA   GI V   
Sbjct: 43  LRGAQVAISN------KVA-LDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNC 95

Query: 106 PGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTV 156
            G  T    S A+ T+ L+L L  +  + + A+   +         L  P  E L GKT+
Sbjct: 96  QGYGT---PSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVE-LEGKTL 151

Query: 157 FILGFGNIGVELAKRLRPFGVKII 180
            +LG G +G  +A+    FG++++
Sbjct: 152 GLLGHGELGGAVARLAEAFGMRVL 175

Length = 317

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 94  AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ-KKLGVPT---GE 149
           A    GI V     D   NA   AE T+  +L  LR+      A    +  G PT   G 
Sbjct: 90  AVWERGILVTS-AADA--NAEPVAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRRGGR 146

Query: 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
            L G+TV I+GFG IG  + + LRPFG++++ 
Sbjct: 147 GLYGRTVGIVGFGRIGRAVVELLRPFGLRVLV 178

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 129
           I +A  ++L++  G+G + +D+ AA   G+ VA    +VTG N  S AE  +  +L LLR
Sbjct: 116 IKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVA----EVTGSNVVSVAEDELMRILILLR 171

Query: 130 K-QNEMRMAI--EQKKLGVPT-GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
                    +  E    G+      L GKTV  +G G IG  L +RL+PF   ++   R
Sbjct: 172 NFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDR 230

Length = 386

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 20/154 (12%)

Query: 39  IQVDVVPIS----DVPDVIANYHLCVV--KTMRLDSNCISRANQMKLIMQFGVGLEGVDI 92
           I+V+ +  +    ++ + + + HL  +  KT +L    +  A ++  I  F +G   VD+
Sbjct: 22  IEVERLKGALDEDELIEALKDVHLLGIRSKT-QLTEEVLEAAPKLLAIGCFCIGTNQVDL 80

Query: 93  NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAIEQKKLGVPTG 148
           +AA + GI V   P     N  S AEL I  ++ L R    +       I  K     TG
Sbjct: 81  DAAAKRGIPVFNAP---FSNTRSVAELVIGEIIMLARRLPDRNAAAHRGIWNK---SATG 134

Query: 149 --ETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
             E + GKT+ I+G+G+IG +L+      G+++I
Sbjct: 135 SHE-VRGKTLGIIGYGHIGSQLSVLAEALGMRVI 167

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score = 51.4 bits (124), Expect = 7e-08
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 74  ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE 133
              +K I     G++ +D++ A   G+K+  +P     +  + AE  +   L LLR   E
Sbjct: 66  EYGIKQIALRSAGVDMIDLDLAKENGLKITNVP---AYSPRAIAEFAVTQALNLLRNTPE 122

Query: 134 MRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRLRPFGVKIIA 181
           +   + +       G  L+G+     TV I+G G IG   AK  + FG K+IA
Sbjct: 123 IDRRVAKGDFRWAPG--LIGREIRDLTVGIIGTGRIGSAAAKIFKGFGAKVIA 173

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 14/120 (11%)

Query: 78  KLIMQFGVGLEGVDIN-AATRCGIKVARIPGDVTG----NAASCAELTIYLMLGLLRKQN 132
           +L+  + +G +  D+  A  R G+    + G        N+    EL++  +   L  Q 
Sbjct: 89  RLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFIARFLEVQQ 148

Query: 133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
             R+       G P    + GKTV ++G G +G E A+ LR  G +++ T  +  +  Q+
Sbjct: 149 PGRLG------GAPD---VAGKTVVVVGAGVVGKEAAQMLRGLGAQVLITDINVEALEQL 199

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 18/136 (13%)

Query: 57  HLCVVKTMRLDSNCISRANQMKLIMQFG--------VGLEGVDINAATRCGIKVARIPGD 108
           H  V+    +  NC +    +++  ++G        VG   +D+ AA   G K+AR+P  
Sbjct: 45  HDAVI----VRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPS- 99

Query: 109 VTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---GETLLGKTVFILGFGNIG 165
            + NA   AEL   L + L R           K   V      + +   TV I+G G IG
Sbjct: 100 YSPNAI--AELAFTLAMTLSRHTAYTASRTANKNFKVDPFMFSKEIRNSTVGIIGTGRIG 157

Query: 166 VELAKRLRPFGVKIIA 181
           +  AK  +  G K+I 
Sbjct: 158 LTAAKLFKGLGAKVIG 173

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score = 45.6 bits (109), Expect = 5e-06
 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 19/95 (20%)

Query: 86  GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145
           G + +D +     GI  A  PG    NA S AE   Y++  LL       +A  Q     
Sbjct: 67  GTDHIDTDYLKERGIGFANAPG---CNANSVAE---YVLSALLV------LAQRQ----- 109

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
             G +L GKTV I+G GN+G  LA+RL   G+ ++
Sbjct: 110 --GFSLKGKTVGIVGVGNVGSRLARRLEALGMNVL 142

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 12/95 (12%)

Query: 83  FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE----MRMAI 138
             VG   VD+ AA + GI V   PG +T    + AEL   L L   R+  E    MR  +
Sbjct: 93  MAVGYNNVDVEAANKYGIAVGNTPGVLT---ETTAELAASLSLAAARRIVEADEFMRAGL 149

Query: 139 EQKKLGVPT---GETLLGKTVFILGFGNIGVELAK 170
            +  L  P    G  L G+TV ++G G IG   A+
Sbjct: 150 YEGWL--PHLFVGNLLKGQTVGVIGAGRIGSAYAR 182

Length = 386

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171
            A + AE  +  +L   ++  E+ +   ++    P G +L G T+ I+GFG IG  LA+R
Sbjct: 95  AAEAIAEFVLAAILAAAKRLPEIWVKGAEQWRREPLG-SLAGSTLGIVGFGAIGQALARR 153

Query: 172 LRPFGVKIIATKRS 185
               G++++A +RS
Sbjct: 154 ALALGMRVLALRRS 167

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           +D   +S+   +KLI     G   VDI  A + GI V  + G  T    S A+ T  ++L
Sbjct: 53  IDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYST---ESVAQHTFAMLL 109

Query: 126 GLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            LL + N     ++  +         +  P GE + GK   I+G G IG  +AK  + FG
Sbjct: 110 SLLGRINYYDRYVKSGEYSESPIFTHISRPLGE-IKGKKWGIIGLGTIGKRVAKIAQAFG 168

Query: 177 VKII 180
            K++
Sbjct: 169 AKVV 172

Length = 311

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 100 IKVARIPGDVT--GNAA----SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG 153
           I V+ IP +V    NA     S AE    L+L   +   E    ++         + L  
Sbjct: 63  IDVSGIPENVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYN 122

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           K++ ILG+G IG  +A   + FG+ I A  RS
Sbjct: 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRS 154

Length = 303

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 11/80 (13%)

Query: 117 AELTIYLMLGLLRKQNEMRMAIEQKK----LG-----VPTGE--TLLGKTVFILGFGNIG 165
           AE T+ L+L  +R+ +EMR A  + +    LG      P G   TLLG  V I GFG+IG
Sbjct: 96  AEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIG 155

Query: 166 VELAKRLRPFGVKIIATKRS 185
             LA  L   G ++    RS
Sbjct: 156 QRLAPLLTALGARVTGVARS 175

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 66  LDSNCISRANQM--KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           L        N++  K I Q   G +  D+  AT+  + ++ +P   + +  S AE T+  
Sbjct: 57  LSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVP---SYSPESIAEFTVTQ 113

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRL-RPFGV 177
            + L+R  N+++  +  ++        +L +      V ++G G IG+ +AK   + +G 
Sbjct: 114 AINLVRHFNQIQTKV--REHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGS 171

Query: 178 KIIA 181
            ++A
Sbjct: 172 DVVA 175

Length = 332

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 27/180 (15%)

Query: 20  PHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKL 79
           P FP  H +  EY        ++    +D+  VI +      K +      +++  ++KL
Sbjct: 21  PSFP--HEWI-EYDHTSAEQTIERAKDADI--VITS------KVL-FTRETLAQLPKLKL 68

Query: 80  IMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGL-------LRKQN 132
           I     G   VD+ AA   GI V  + G  +    +  E  + ++  L        R Q 
Sbjct: 69  IAITATGTNNVDLVAAKELGIAVKNVTGYSS---TTVPEHVLGMIFALKHSLMGWYRDQL 125

Query: 133 EMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189
             R A   K+      P  + + G T+ + G G +G E+ +  +  G+K++  +   AS 
Sbjct: 126 SDRWA-TCKQFCYFDYPITD-VRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV 183

Length = 314

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 117 AELTI--YLML--GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           AE  I  +L+L    L+     +     ++    + E  +GK V ILG+G+IG + A+  
Sbjct: 93  AEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLA 152

Query: 173 RPFGVKIIATKRS 185
           +  G+++ A  RS
Sbjct: 153 QALGMEVYAYTRS 165

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	99.97
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.86
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.71
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.68
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.68
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.36
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.24
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.95
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.26
PRK05479	330	ketol-acid reductoisomerase; Provisional	98.17
PLN02494	477	adenosylhomocysteinase	98.14
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.04
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.94
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.93
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	97.89
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.79
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.78
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.7
PRK05225	487	ketol-acid reductoisomerase; Validated	97.69
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	97.45
PLN02712	667	arogenate dehydrogenase	97.44
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.36
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.3
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.24
PLN02256	304	arogenate dehydrogenase	97.21
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.2
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.08
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.06
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.95
PRK09414	445	glutamate dehydrogenase; Provisional	96.92
PRK08818	370	prephenate dehydrogenase; Provisional	96.91
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.85
PLN02712	667	arogenate dehydrogenase	96.8
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.78
PRK14031	444	glutamate dehydrogenase; Provisional	96.77
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.75
PLN02477	410	glutamate dehydrogenase	96.72
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.71
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.7
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.69
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.68
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	96.62
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.61
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.56
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.55
KOG0409	327	consensus Predicted dehydrogenase [General functio	96.52
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.52
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.52
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.5
PRK14030	445	glutamate dehydrogenase; Provisional	96.49
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.49
PLN02858	1378	fructose-bisphosphate aldolase	96.48
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	96.39
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.36
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.34
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.34
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.29
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	96.24
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.22
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.22
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.21
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	96.07
PLN02858	1378	fructose-bisphosphate aldolase	96.04
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.03
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.0
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.99
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.97
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.95
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.94
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.92
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.91
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	95.91
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	95.91
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.9
PRK08328	231	hypothetical protein; Provisional	95.88
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.87
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.86
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	95.85
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.82
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	95.79
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.76
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.75
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.75
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.73
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.72
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.72
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.69
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	95.68
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.66
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.66
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	95.64
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.61
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	95.53
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	95.5
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.46
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.42
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.41
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.41
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.4
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.4
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.37
PTZ00431	260	pyrroline carboxylate reductase; Provisional	95.33
PLN00203	519	glutamyl-tRNA reductase	95.32
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	95.32
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.31
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.3
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.29
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.25
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.25
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.21
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.17
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.16
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	95.16
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.15
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	94.99
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.98
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.93
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.92
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.85
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	94.83
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	94.77
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.76
PRK07411	390	hypothetical protein; Validated	94.75
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.74
PRK04148	134	hypothetical protein; Provisional	94.71
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	94.65
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.63
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.63
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.55
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.53
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	94.52
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.47
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.44
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.39
PLN02948	577	phosphoribosylaminoimidazole carboxylase	94.23
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.16
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.15
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.12
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.11
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	94.08
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.05
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.03
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.96
PRK13940	414	glutamyl-tRNA reductase; Provisional	93.92
PRK06197	306	short chain dehydrogenase; Provisional	93.92
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	93.77
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	93.75
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	93.68
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.63
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.61
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	93.57
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	93.53
PRK06153	393	hypothetical protein; Provisional	93.5
PRK14982	340	acyl-ACP reductase; Provisional	93.47
COG0027	394	PurT Formate-dependent phosphoribosylglycinamide f	93.44
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.39
PRK12828	239	short chain dehydrogenase; Provisional	93.36
PRK08703	239	short chain dehydrogenase; Provisional	93.34
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	93.3
PRK07523	255	gluconate 5-dehydrogenase; Provisional	93.26
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	93.25
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	93.22
PTZ00245	287	ubiquitin activating enzyme; Provisional	93.11
PRK09496	453	trkA potassium transporter peripheral membrane com	93.1
PRK06841	255	short chain dehydrogenase; Provisional	93.01
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	92.97
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	92.92
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.89
PRK06523	260	short chain dehydrogenase; Provisional	92.83
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	92.8
PRK06398	258	aldose dehydrogenase; Validated	92.73
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.66
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	92.66
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	92.62
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	92.57
PTZ00117	319	malate dehydrogenase; Provisional	92.57
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	92.54
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	92.53
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	92.49
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	92.43
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	92.38
PRK06057	255	short chain dehydrogenase; Provisional	92.34
PRK08223	287	hypothetical protein; Validated	92.28
PRK06949	258	short chain dehydrogenase; Provisional	92.26
PRK15116	268	sulfur acceptor protein CsdL; Provisional	92.25
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	92.25
PLN02780	320	ketoreductase/ oxidoreductase	92.15
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	92.1
PRK08264	238	short chain dehydrogenase; Validated	92.1
PRK05717	255	oxidoreductase; Validated	92.02
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	91.99
PRK07576	264	short chain dehydrogenase; Provisional	91.92
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	91.88
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.88
PTZ00082	321	L-lactate dehydrogenase; Provisional	91.86
PRK07890	258	short chain dehydrogenase; Provisional	91.79
PRK08265	261	short chain dehydrogenase; Provisional	91.77
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	91.76
PRK06172	253	short chain dehydrogenase; Provisional	91.73
PRK08862	227	short chain dehydrogenase; Provisional	91.69
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	91.66
PRK07060	245	short chain dehydrogenase; Provisional	91.65
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	91.65
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.64
PRK09186	256	flagellin modification protein A; Provisional	91.64
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	91.63
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	91.6
PRK08339	263	short chain dehydrogenase; Provisional	91.58
PRK07831	262	short chain dehydrogenase; Provisional	91.54
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	91.53
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	91.49
PRK08628	258	short chain dehydrogenase; Provisional	91.48
PRK07806	248	short chain dehydrogenase; Provisional	91.44
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	91.44
PRK05562	223	precorrin-2 dehydrogenase; Provisional	91.42
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	91.42
PRK06125	259	short chain dehydrogenase; Provisional	91.42
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	91.39
PLN02740	381	Alcohol dehydrogenase-like	91.34
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	91.28
PRK06114	254	short chain dehydrogenase; Provisional	91.26
PRK07062	265	short chain dehydrogenase; Provisional	91.18
PRK08085	254	gluconate 5-dehydrogenase; Provisional	91.15
PRK07856	252	short chain dehydrogenase; Provisional	91.14
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	91.14
PRK06138	252	short chain dehydrogenase; Provisional	91.11
PRK07326	237	short chain dehydrogenase; Provisional	91.08
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	91.08
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	91.05
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	91.05
PLN02586	360	probable cinnamyl alcohol dehydrogenase	91.04
PRK06124	256	gluconate 5-dehydrogenase; Provisional	91.03
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	91.01
PRK05867	253	short chain dehydrogenase; Provisional	91.01
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	91.01
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	91.01
PRK09072	263	short chain dehydrogenase; Provisional	91.0
PRK07774	250	short chain dehydrogenase; Provisional	90.99
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	90.99
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	90.97
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	90.97
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	90.89
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	90.87
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	90.86
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	90.85
PRK12829	264	short chain dehydrogenase; Provisional	90.85
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	90.81
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	90.8
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	90.79
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.79
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	90.77
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	90.77
PRK07814	263	short chain dehydrogenase; Provisional	90.75
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	90.72
PRK06500	249	short chain dehydrogenase; Provisional	90.7
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	90.58
PLN02178	375	cinnamyl-alcohol dehydrogenase	90.58
PRK08213	259	gluconate 5-dehydrogenase; Provisional	90.57
PRK07825	273	short chain dehydrogenase; Provisional	90.56
PRK12862	763	malic enzyme; Reviewed	90.55
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	90.55
PRK03562	621	glutathione-regulated potassium-efflux system prot	90.52
PLN02253	280	xanthoxin dehydrogenase	90.51
PRK06198	260	short chain dehydrogenase; Provisional	90.49
PRK14851	679	hypothetical protein; Provisional	90.49
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.49
PRK08278	273	short chain dehydrogenase; Provisional	90.49
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	90.48
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	90.47
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	90.47
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	90.44
PRK05876	275	short chain dehydrogenase; Provisional	90.43
PRK05866	293	short chain dehydrogenase; Provisional	90.42
COG0281	432	SfcA Malic enzyme [Energy production and conversio	90.4
PRK12939	250	short chain dehydrogenase; Provisional	90.39
PRK12861	764	malic enzyme; Reviewed	90.36
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	90.34
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	90.32
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	90.27
PRK14852	989	hypothetical protein; Provisional	90.25
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	90.24
PRK06141	314	ornithine cyclodeaminase; Validated	90.23
PRK06194	287	hypothetical protein; Provisional	90.23
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	90.21
PRK08589	272	short chain dehydrogenase; Validated	90.21
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	90.17
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	90.16
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	90.15
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	90.11
PRK07478	254	short chain dehydrogenase; Provisional	90.11
PRK09242	257	tropinone reductase; Provisional	90.09
PRK07035	252	short chain dehydrogenase; Provisional	90.09
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	90.08
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	90.07
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	90.06
PRK07063	260	short chain dehydrogenase; Provisional	90.03
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	90.03
PRK11730	715	fadB multifunctional fatty acid oxidation complex	89.97
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	89.97
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	89.93
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	89.93
PRK12367	245	short chain dehydrogenase; Provisional	89.89
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	89.85
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.84
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	89.82
PRK07577	234	short chain dehydrogenase; Provisional	89.78
PRK05875	276	short chain dehydrogenase; Provisional	89.77
PRK08277	278	D-mannonate oxidoreductase; Provisional	89.77
PRK13529	563	malate dehydrogenase; Provisional	89.76
PLN02240	352	UDP-glucose 4-epimerase	89.74
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	89.73
PRK06196	315	oxidoreductase; Provisional	89.73
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	89.7
PRK07067	257	sorbitol dehydrogenase; Provisional	89.7
PLN02896	353	cinnamyl-alcohol dehydrogenase	89.66
PRK12742	237	oxidoreductase; Provisional	89.65
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	89.56
PRK05872	296	short chain dehydrogenase; Provisional	89.52
PRK08226	263	short chain dehydrogenase; Provisional	89.51
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	89.49
PRK05993	277	short chain dehydrogenase; Provisional	89.49
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	89.46
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	89.43
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	89.42
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	89.4
PRK03659	601	glutathione-regulated potassium-efflux system prot	89.36
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	89.33
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.27
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	89.24
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	89.23
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	89.2
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	89.19
PRK10669	558	putative cation:proton antiport protein; Provision	89.18
PRK06720	169	hypothetical protein; Provisional	89.1
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	89.08
PRK05854	313	short chain dehydrogenase; Provisional	89.04
PRK08303	305	short chain dehydrogenase; Provisional	88.99
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	88.97
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	88.92
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	88.82
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	88.78
PRK06139	330	short chain dehydrogenase; Provisional	88.77
PRK08936	261	glucose-1-dehydrogenase; Provisional	88.76
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	88.72
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	88.71
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.67
KOG1687	168	consensus NADH-ubiquinone oxidoreductase, NUFS7/PS	88.65
PTZ00325	321	malate dehydrogenase; Provisional	88.64
PRK06182	273	short chain dehydrogenase; Validated	88.48
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	88.45
PLN02653	340	GDP-mannose 4,6-dehydratase	88.43
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	88.38
PRK07097	265	gluconate 5-dehydrogenase; Provisional	88.32
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	88.31
PRK09135	249	pteridine reductase; Provisional	88.3
PLN02514	357	cinnamyl-alcohol dehydrogenase	88.29
PRK07985	294	oxidoreductase; Provisional	88.29
PLN02695	370	GDP-D-mannose-3',5'-epimerase	88.28
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	88.23
COG5322	351	Predicted dehydrogenase [General function predicti	88.23
PRK08324	681	short chain dehydrogenase; Validated	88.17
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	88.14
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.14
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	88.14
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	88.09
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	88.05
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	88.03
PRK06180	277	short chain dehydrogenase; Provisional	88.01
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	87.98
PRK06914	280	short chain dehydrogenase; Provisional	87.98
PRK06701	290	short chain dehydrogenase; Provisional	87.93
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	87.89
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	87.85
PRK07904	253	short chain dehydrogenase; Provisional	87.7
PLN03209	576	translocon at the inner envelope of chloroplast su	87.69
PRK07877	722	hypothetical protein; Provisional	87.68
PRK10637	457	cysG siroheme synthase; Provisional	87.66
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	87.59
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	87.59
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	87.58
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	87.56
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	87.54
PRK06179	270	short chain dehydrogenase; Provisional	87.52
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	87.48
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	87.47
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	87.41
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.3
PRK12831	464	putative oxidoreductase; Provisional	87.25
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	87.18
PLN02827	378	Alcohol dehydrogenase-like	87.15
PRK12827	249	short chain dehydrogenase; Provisional	87.12
PRK07454	241	short chain dehydrogenase; Provisional	87.11
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	86.95
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	86.94
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	86.93
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	86.91
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.88
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	86.88
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	86.87
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	86.85
PRK07340	304	ornithine cyclodeaminase; Validated	86.84
PRK07453	322	protochlorophyllide oxidoreductase; Validated	86.78
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	86.73
PRK12744	257	short chain dehydrogenase; Provisional	86.68
PRK12935	247	acetoacetyl-CoA reductase; Provisional	86.67
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	86.67
PRK07109	334	short chain dehydrogenase; Provisional	86.65
PLN02214	342	cinnamoyl-CoA reductase	86.63
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	86.63
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	86.61
PLN03129	581	NADP-dependent malic enzyme; Provisional	86.6
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	86.54
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	86.53
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	86.49
PLN02427	386	UDP-apiose/xylose synthase	86.48
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.45
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	86.4
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	86.38
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.33
PRK12831	464	putative oxidoreductase; Provisional	86.32
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	86.24
PLN00106	323	malate dehydrogenase	86.2
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	86.18
PRK12814	652	putative NADPH-dependent glutamate synthase small	86.04
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.95
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	85.95
PRK06128	300	oxidoreductase; Provisional	85.87
PLN02602	350	lactate dehydrogenase	85.83
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	85.8
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	85.76
PLN02572	442	UDP-sulfoquinovose synthase	85.61
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	85.6
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	85.6
PRK07791	286	short chain dehydrogenase; Provisional	85.51
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	85.49
PRK13512	438	coenzyme A disulfide reductase; Provisional	85.45
PRK14804	311	ornithine carbamoyltransferase; Provisional	85.42
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	85.4
PTZ00317	559	NADP-dependent malic enzyme; Provisional	85.37
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	85.36
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	85.32
PRK12938	246	acetyacetyl-CoA reductase; Provisional	85.23
PRK01713	334	ornithine carbamoyltransferase; Provisional	84.99
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	84.95
TIGR01283	456	nifE nitrogenase molybdenum-iron cofactor biosynth	84.94
PRK12937	245	short chain dehydrogenase; Provisional	84.9
PRK06370	463	mercuric reductase; Validated	84.86
PTZ00058	561	glutathione reductase; Provisional	84.84
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	84.83
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	84.82
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	84.81
PRK06116	450	glutathione reductase; Validated	84.8
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	84.7
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	84.67
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	84.61
PLN02206	442	UDP-glucuronate decarboxylase	84.56
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	84.55
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	84.55
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	84.52
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	84.47
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	84.43
PRK07846	451	mycothione reductase; Reviewed	84.39
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	84.37
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.31
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	84.31
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	84.22
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	84.18
PRK12747	252	short chain dehydrogenase; Provisional	84.14
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	84.08
PRK07201	657	short chain dehydrogenase; Provisional	84.07
PLN02583	297	cinnamoyl-CoA reductase	84.03
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	84.02
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	83.99
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	83.94
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	83.91
PRK08618	325	ornithine cyclodeaminase; Validated	83.85
PRK13984	604	putative oxidoreductase; Provisional	83.8
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	83.79
PRK09134	258	short chain dehydrogenase; Provisional	83.75

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-41  Score=287.99  Aligned_cols=161  Identities=24%  Similarity=0.352  Sum_probs=148.0

Q ss_pred             CCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHH
Q 028302           46 ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML  125 (210)
Q Consensus        46 ~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L  125 (210)
                      .+++.+.++++|+++.+..+++++.++.+|+||||++.++|+|++|+++++++||.|+|+||+   ++.+||||+++++|
T Consensus        33 ~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~VAE~a~~l~L  109 (311)
T PRK08410         33 PEEVIERIKDANIIITNKVVIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGY---STESVAQHTFAMLL  109 (311)
T ss_pred             HHHHHHHhCCCCEEEECCCCCCHHHHhhCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCC---CChHHHHHHHHHHH
Confidence            456678889999998876789999999999999999999999999999999999999999999   88999999999999


Q ss_pred             HHHhhHHHHHHHHHhCCCCCC--------cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC---------
Q 028302          126 GLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS---------  188 (210)
Q Consensus       126 ~~~R~~~~~~~~~~~~~w~~~--------~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~---------  188 (210)
                      +++|++..+++.++++.|...        .+++|+||||||||+|+||+++|+++++|||+|++|||+.+.         
T Consensus       110 ~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~  189 (311)
T PRK08410        110 SLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVS  189 (311)
T ss_pred             HHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeec
Confidence            999999999999999999742        146899999999999999999999999999999999997532         


Q ss_pred             --CCcccCceeEEecCCCCCCCCC
Q 028302          189 --HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       189 --~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                        +++.++|.+++.||+|+ +|+|
T Consensus       190 l~ell~~sDvv~lh~Plt~-~T~~  212 (311)
T PRK08410        190 LEELLKTSDIISIHAPLNE-KTKN  212 (311)
T ss_pred             HHHHhhcCCEEEEeCCCCc-hhhc
Confidence              15789999999999999 9997

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=2.7e-41  Score=291.48  Aligned_cols=203  Identities=66%  Similarity=1.060  Sum_probs=178.1

Q ss_pred             CCCCCcceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEcccc
Q 028302            7 SSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVG   86 (210)
Q Consensus         7 ~~~~~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG   86 (210)
                      .+++.+|+|+++.+.++....+.++.++.++.+.+...+.+++.+.++++|+++++..+++++.++.+|+||||++.++|
T Consensus        13 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G   92 (347)
T PLN02928         13 HSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPKMMRLDADIIARASQMKLIMQFGVG   92 (347)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEECCCCCCHHHHhcCCCceEEEECCcc
Confidence            56778889999988776545566777777776655556666778888999998887678999999999999999999999


Q ss_pred             CCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHH
Q 028302           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGV  166 (210)
Q Consensus        87 ~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~  166 (210)
                      +|++|++++.++||.|+|+++++++|+.+||||+++++|+++|++..+.+.++++.|....+.+|.||||||||+|+||+
T Consensus        93 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~  172 (347)
T PLN02928         93 LEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGI  172 (347)
T ss_pred             cCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHH
Confidence            99999999999999999999975558899999999999999999999999999999986666899999999999999999


Q ss_pred             HHHHHhccCCCEEEEEcCCCCC---------------------------CCcccCceeEEecCCCCCCCCC
Q 028302          167 ELAKRLRPFGVKIIATKRSWAS---------------------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       167 ~vA~~~~~fg~~V~~~~~~~~~---------------------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      ++|++|++|||+|++|||+.++                           +.+.++|.+++.+|+|+ +|+|
T Consensus       173 ~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~-~T~~  242 (347)
T PLN02928        173 ELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTK-ETAG  242 (347)
T ss_pred             HHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCCh-Hhhc
Confidence            9999999999999999986321                           14568999999999999 9987

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-41  Score=288.94  Aligned_cols=191  Identities=29%  Similarity=0.429  Sum_probs=162.6

Q ss_pred             cceEEEeCCCCCCchhhHHHHhhcCCCeEEe---cCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCC
Q 028302           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVD---VVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLE   88 (210)
Q Consensus        12 ~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d   88 (210)
                      +++++......++   ..+.+... ..+.+.   ..+.+++.+.++++|++++..++++++.++.+|+||||++.++|+|
T Consensus         3 ~~~vl~~~~~~~~---~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~v~~~~l~~~~~Lk~I~~~g~Gvd   78 (324)
T COG0111           3 MIKVLVTDPLAPD---ALEELLAA-YDVEVPDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGVD   78 (324)
T ss_pred             cceeeccCccCHH---HHHHHHhc-cccccccccccchHHHHhhcccCcEEEEecCCCCHHHHhhCCCceEEEEcccccc
Confidence            4567776665432   33333333 223332   2234556788899998887778999999999999999999999999


Q ss_pred             ccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC--CcccccccCeEEEEecChHHH
Q 028302           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGV  166 (210)
Q Consensus        89 ~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~~~tvGIiG~G~IG~  166 (210)
                      ++|.+++.++||.|+|+|+.   |+.+||||+++++|+++|+++.+++.++++.|.+  ..+.+|+||||||||+|+||+
T Consensus        79 ~id~~~~~~~gi~V~nap~~---na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~  155 (324)
T COG0111          79 NIDLEAATKRGILVVNAPGG---NAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGR  155 (324)
T ss_pred             ccCHHHHhhcCCEEEeCCCc---chHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHH
Confidence            99999999999999999998   9999999999999999999999999999999996  456799999999999999999


Q ss_pred             HHHHHhccCCCEEEEEcCCCCCC---------------CcccCceeEEecCCCCCCCCC
Q 028302          167 ELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       167 ~vA~~~~~fg~~V~~~~~~~~~~---------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      ++|+++++|||+|++|||+.+++               ++.++|.+++.+|+|+ +|+|
T Consensus       156 ~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~-eT~g  213 (324)
T COG0111         156 AVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTP-ETRG  213 (324)
T ss_pred             HHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCc-chhc
Confidence            99999999999999999954332               6889999999999999 9997

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-40  Score=284.66  Aligned_cols=194  Identities=22%  Similarity=0.333  Sum_probs=161.4

Q ss_pred             ceEEEeCCC-CCCchhhHHHHhhcCCCeEEecC-CCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCcc
Q 028302           13 TRVLFCGPH-FPASHNYTKEYLQNYPSIQVDVV-PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGV   90 (210)
Q Consensus        13 ~~ili~~~~-~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~i   90 (210)
                      |||+++... .+......+.+.+.++++.+... +.+++.+.++++|+++.+..+++++.++++|+||||++.++|+|++
T Consensus         1 m~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   80 (317)
T PRK06487          1 MRAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNV   80 (317)
T ss_pred             CeEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEeCCCCCHHHHhhCCCCeEEEEcCcccccc
Confidence            357766543 11111122233334566555432 3456778889999988776789999999999999999999999999


Q ss_pred             chhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC--------cccccccCeEEEEecC
Q 028302           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFG  162 (210)
Q Consensus        91 d~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--------~~~~l~~~tvGIiG~G  162 (210)
                      |.+.+.++||.|+|++|+   ++.+||||+++++|+++|++..+++.++++.|...        .+++|.||||||||+|
T Consensus        81 d~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G  157 (317)
T PRK06487         81 DLAAARERGITVCNCQGY---GTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHG  157 (317)
T ss_pred             CHHHHHHCCCEEEeCCCC---CcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCC
Confidence            999999999999999998   88999999999999999999999999999999743        2468999999999999


Q ss_pred             hHHHHHHHHhccCCCEEEEEcCCCCC---------CCcccCceeEEecCCCCCCCCC
Q 028302          163 NIGVELAKRLRPFGVKIIATKRSWAS---------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       163 ~IG~~vA~~~~~fg~~V~~~~~~~~~---------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +||+++|+++++|||+|++|||+.++         +++.++|.+++.||+|+ +|+|
T Consensus       158 ~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~-~T~~  213 (317)
T PRK06487        158 ELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTE-HTRH  213 (317)
T ss_pred             HHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCCh-HHhc
Confidence            99999999999999999999987542         25789999999999999 9997

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=2.1e-40  Score=282.43  Aligned_cols=159  Identities=28%  Similarity=0.458  Sum_probs=147.6

Q ss_pred             ChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHH
Q 028302           48 DVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG  126 (210)
Q Consensus        48 ~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~  126 (210)
                      ++.+.++++|++++. +.+++.+.++++|+||+|+..++||||||++++.++||.|+|+|++   +.++||||+++++|+
T Consensus        37 ~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~---~t~sVAe~~~aLiLa  113 (324)
T COG1052          37 ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGY---STEAVAEHAVALILA  113 (324)
T ss_pred             HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCC---CchHHHHHHHHHHHH
Confidence            346778999998885 6889999999999999999999999999999999999999999999   569999999999999


Q ss_pred             HHhhHHHHHHHHHhCCCCC------CcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC-----------
Q 028302          127 LLRKQNEMRMAIEQKKLGV------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----------  189 (210)
Q Consensus       127 ~~R~~~~~~~~~~~~~w~~------~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~-----------  189 (210)
                      +.|++.+.++.+++|.|..      ..+.+++|||+||||+|+||+++|+++++|||+|+||||+++++           
T Consensus       114 ~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~  193 (324)
T COG1052         114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVD  193 (324)
T ss_pred             HhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceecc
Confidence            9999999999999999875      35679999999999999999999999999999999999987422           


Q ss_pred             ---CcccCceeEEecCCCCCCCCC
Q 028302          190 ---SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       190 ---~~~~~~~~~~~~Plt~~~T~h  210 (210)
                         ++.++|.+++.||+|+ +|+|
T Consensus       194 l~ell~~sDii~l~~Plt~-~T~h  216 (324)
T COG1052         194 LDELLAESDIISLHCPLTP-ETRH  216 (324)
T ss_pred             HHHHHHhCCEEEEeCCCCh-HHhh
Confidence               6889999999999999 9998

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-40  Score=283.85  Aligned_cols=162  Identities=16%  Similarity=0.255  Sum_probs=147.8

Q ss_pred             CCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHH
Q 028302           45 PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM  124 (210)
Q Consensus        45 ~~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~  124 (210)
                      +.+++.+.++++|+++....+++++.++++|+||||++.++|+|+||.+++.++||.|+|++|+   ++.+||||+++++
T Consensus        34 ~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~i~l~  110 (314)
T PRK06932         34 SAEQTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGY---SSTTVPEHVLGMI  110 (314)
T ss_pred             ChHHHHHHhCCCcEEEEeCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCC---ChhHHHHHHHHHH
Confidence            4566778889999888766679999999999999999999999999999999999999999999   8899999999999


Q ss_pred             HHHHhhHHHHHHHHHhCCCCCC--------cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC---------
Q 028302          125 LGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA---------  187 (210)
Q Consensus       125 L~~~R~~~~~~~~~~~~~w~~~--------~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~---------  187 (210)
                      |++.|++..+++.++++.|...        .+.+|+||||||||+|+||+++|+++++|||+|++||++..         
T Consensus       111 l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~  190 (314)
T PRK06932        111 FALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTP  190 (314)
T ss_pred             HHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCC
Confidence            9999999999999999999742        24689999999999999999999999999999999998642         


Q ss_pred             -CCCcccCceeEEecCCCCCCCCC
Q 028302          188 -SHSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       188 -~~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                       ++.+.++|.+++.||+|+ +|+|
T Consensus       191 l~ell~~sDiv~l~~Plt~-~T~~  213 (314)
T PRK06932        191 FEEVLKQADIVTLHCPLTE-TTQN  213 (314)
T ss_pred             HHHHHHhCCEEEEcCCCCh-HHhc
Confidence             135789999999999999 9987

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=1.1e-40  Score=285.06  Aligned_cols=191  Identities=19%  Similarity=0.272  Sum_probs=160.0

Q ss_pred             cceEEEeCCCCCCchhhHHHHhhcCCCeEEec-C---CCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccC
Q 028302           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-V---PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGL   87 (210)
Q Consensus        12 ~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~-~---~~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~   87 (210)
                      +|+|+++.+..+   ...+. ++...++.+.. .   +.+++.+.++++|++++...++++++++++|+||||++.|+|+
T Consensus         2 ~~~vl~~~~~~~---~~~~~-l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~l~~~p~Lk~I~~~g~G~   77 (323)
T PRK15409          2 KPSVILYKALPD---DLLQR-LEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSGEKVDAALLEKMPKLRAASTISVGY   77 (323)
T ss_pred             CceEEEeCCCCH---HHHHH-HHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcCCCCCHHHHhhCCCCeEEEECceec
Confidence            368999986432   22233 33322333221 1   2234567788999998766689999999999999999999999


Q ss_pred             CccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC-----cccccccCeEEEEecC
Q 028302           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-----TGETLLGKTVFILGFG  162 (210)
Q Consensus        88 d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-----~~~~l~~~tvGIiG~G  162 (210)
                      |+||++++.++||.|+|+||+   ++++||||+++++|+++|++..+++.+++|.|...     .+.+|+||||||||+|
T Consensus        78 d~id~~~~~~~gI~V~n~~~~---~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G  154 (323)
T PRK15409         78 DNFDVDALTARKILLMHTPTV---LTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMG  154 (323)
T ss_pred             ccccHHHHHHCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEccc
Confidence            999999999999999999999   88999999999999999999999999999999642     4679999999999999


Q ss_pred             hHHHHHHHHhc-cCCCEEEEEcCCCCC--------------CCcccCceeEEecCCCCCCCCC
Q 028302          163 NIGVELAKRLR-PFGVKIIATKRSWAS--------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       163 ~IG~~vA~~~~-~fg~~V~~~~~~~~~--------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +||+++|++++ +|||+|++|||+.++              +++.++|.+++.||+|+ +|+|
T Consensus       155 ~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~-~T~~  216 (323)
T PRK15409        155 RIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTD-ETHH  216 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCCh-HHhh
Confidence            99999999998 999999999987432              15789999999999999 9987

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-38  Score=279.88  Aligned_cols=197  Identities=21%  Similarity=0.243  Sum_probs=163.1

Q ss_pred             CCCCCcceEEEeCCCCCCchhhHHHHhhcCC-CeEEe--cCCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEE
Q 028302            7 SSDKNITRVLFCGPHFPASHNYTKEYLQNYP-SIQVD--VVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQ   82 (210)
Q Consensus         7 ~~~~~~~~ili~~~~~~~~~~~~~~~~~~~~-~v~~~--~~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~   82 (210)
                      +..+.+|+|+++.+..++   ..+.+.+... ++.+.  ..+.+++.+.++++|+++.. ..+++++.++++|+||||++
T Consensus         5 ~~~~~~~~ili~~~~~~~---~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~   81 (409)
T PRK11790          5 SLPKDKIKFLLLEGVHQS---AVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGC   81 (409)
T ss_pred             CCCCCCeEEEEECCCCHH---HHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEE
Confidence            556678899998654322   2222222222 33322  12345667788999988764 35799999999999999999


Q ss_pred             ccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC--cccccccCeEEEEe
Q 028302           83 FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILG  160 (210)
Q Consensus        83 ~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~~~tvGIiG  160 (210)
                      .|+|+|+||++.+.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|...  .+.+|.||||||||
T Consensus        82 ~~~G~d~id~~~~~~~gI~V~n~pg~---~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG  158 (409)
T PRK11790         82 FCIGTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVG  158 (409)
T ss_pred             CceecccccHHHHHhCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEEC
Confidence            99999999999999999999999999   88999999999999999999999999999999853  46899999999999


Q ss_pred             cChHHHHHHHHhccCCCEEEEEcCCCCC------------CCcccCceeEEecCCCCCCCCC
Q 028302          161 FGNIGVELAKRLRPFGVKIIATKRSWAS------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       161 ~G~IG~~vA~~~~~fg~~V~~~~~~~~~------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +|+||+++|+++++|||+|++||++...            +++.++|.++..||+|+ +|+|
T Consensus       159 ~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~-~T~~  219 (409)
T PRK11790        159 YGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETP-STKN  219 (409)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCCh-HHhh
Confidence            9999999999999999999999986421            14678999999999999 9997

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=1.3e-38  Score=273.58  Aligned_cols=190  Identities=24%  Similarity=0.380  Sum_probs=158.0

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEec----CCCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEEccccC
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGL   87 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~p~Lk~i~~~~aG~   87 (210)
                      |+|+++.+..   ....+.+.+.+ ++.+..    .+.+++.+.++++|++++.. .++++++++++|+||||++.++|+
T Consensus         3 ~kil~~~~~~---~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~   78 (333)
T PRK13243          3 PKVFITREIP---ENGIEMLEEHF-EVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGY   78 (333)
T ss_pred             ceEEEECCCC---HHHHHHHhcCc-eEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccc
Confidence            6888886532   22223333322 333221    12344667789999988753 479999999999999999999999


Q ss_pred             CccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC---------cccccccCeEEE
Q 028302           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTVFI  158 (210)
Q Consensus        88 d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---------~~~~l~~~tvGI  158 (210)
                      |++|++++.++||.|+|++|+   |+.+||||+++++|+++|++..+++.++++.|...         .+.+|+||||||
T Consensus        79 d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI  155 (333)
T PRK13243         79 DNIDVEEATRRGIYVTNTPGV---LTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI  155 (333)
T ss_pred             cccCHHHHHHcCCEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence            999999999999999999999   89999999999999999999999999999999741         357899999999


Q ss_pred             EecChHHHHHHHHhccCCCEEEEEcCCCCCC--------------CcccCceeEEecCCCCCCCCC
Q 028302          159 LGFGNIGVELAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       159 iG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~--------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      ||+|+||+.+|+++++|||+|++|||++++.              .+.++|.+++.+|+|+ +|+|
T Consensus       156 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~-~T~~  220 (333)
T PRK13243        156 IGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTK-ETYH  220 (333)
T ss_pred             ECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCCh-HHhh
Confidence            9999999999999999999999999875431              4678999999999999 9986

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-36  Score=273.30  Aligned_cols=190  Identities=34%  Similarity=0.512  Sum_probs=160.3

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEec---CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEccccCC
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE   88 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~aG~d   88 (210)
                      |+|+++.+..+   .. .+.++..+++++..   .+.+++.+.++++|++++. ..++++++++++|+||||++.++|+|
T Consensus         1 m~ili~~~~~~---~~-~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   76 (526)
T PRK13581          1 MKVLVSDPISP---AG-LEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVD   76 (526)
T ss_pred             CeEEEeCCCCH---HH-HHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence            47888865432   22 23333333444432   2345667888999998875 35799999999999999999999999


Q ss_pred             ccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC--cccccccCeEEEEecChHHH
Q 028302           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGV  166 (210)
Q Consensus        89 ~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~~~tvGIiG~G~IG~  166 (210)
                      ++|++++.++||.|+|+|++   |+.+||||+++++|+++|+++.+++.++++.|...  .+.+|.||||||||+|+||+
T Consensus        77 ~id~~~~~~~gI~V~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~  153 (526)
T PRK13581         77 NVDVPAATRRGIIVVNAPTG---NTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGS  153 (526)
T ss_pred             cccHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHH
Confidence            99999999999999999998   88999999999999999999999999999999753  46899999999999999999


Q ss_pred             HHHHHhccCCCEEEEEcCCCCC--------------CCcccCceeEEecCCCCCCCCC
Q 028302          167 ELAKRLRPFGVKIIATKRSWAS--------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       167 ~vA~~~~~fg~~V~~~~~~~~~--------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      .+|+++++|||+|++|||+..+              +.+.++|.+++.+|+|+ +|+|
T Consensus       154 ~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~-~t~~  210 (526)
T PRK13581        154 EVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTP-ETRG  210 (526)
T ss_pred             HHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCCh-Hhhc
Confidence            9999999999999999986432              15678999999999999 9987

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-36  Score=263.05  Aligned_cols=160  Identities=30%  Similarity=0.467  Sum_probs=145.8

Q ss_pred             CChhhhcCCceEEEEcC---CCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHH
Q 028302           47 SDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (210)
Q Consensus        47 ~~~~~~~~~adv~i~~~---~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~  123 (210)
                      +++.+.++++|++++..   .+++++.++++|+||||++.++|+|++|++++.++||.|+|++++   |+.+||||++++
T Consensus        82 ~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~---~a~~VAE~al~l  158 (385)
T PRK07574         82 SDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGS---NSISVAEHVVMM  158 (385)
T ss_pred             HHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCC---chHHHHHHHHHH
Confidence            55677889999998742   469999999999999999999999999999999999999999998   899999999999


Q ss_pred             HHHHHhhHHHHHHHHHhCCCCCC----cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC-----------
Q 028302          124 MLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS-----------  188 (210)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~-----------  188 (210)
                      +|++.|++..+++.++++.|...    .+.+|.|+||||||+|+||+.+|++|++|||+|++|||+..+           
T Consensus       159 ~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~  238 (385)
T PRK07574        159 ILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTY  238 (385)
T ss_pred             HHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCcee
Confidence            99999999999999999999752    457899999999999999999999999999999999997521           


Q ss_pred             -----CCcccCceeEEecCCCCCCCCC
Q 028302          189 -----HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       189 -----~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                           +++..+|.+++.||+|+ +|+|
T Consensus       239 ~~~l~ell~~aDvV~l~lPlt~-~T~~  264 (385)
T PRK07574        239 HVSFDSLVSVCDVVTIHCPLHP-ETEH  264 (385)
T ss_pred             cCCHHHHhhcCCEEEEcCCCCH-HHHH
Confidence                 14789999999999999 9986

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-36  Score=261.80  Aligned_cols=160  Identities=26%  Similarity=0.395  Sum_probs=145.1

Q ss_pred             CChhhhcCCceEEEEcC---CCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHH
Q 028302           47 SDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (210)
Q Consensus        47 ~~~~~~~~~adv~i~~~---~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~  123 (210)
                      +++.+.++++|++++..   .+++++.++++|+||||++.++|+|+||++++.++||.|+|++|+   |+.+||||++++
T Consensus        89 ~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~---na~sVAE~al~l  165 (386)
T PLN03139         89 CELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGS---NVVSVAEDELMR  165 (386)
T ss_pred             HHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCc---CcHHHHHHHHHH
Confidence            45677889999998743   359999999999999999999999999999999999999999998   899999999999


Q ss_pred             HHHHHhhHHHHHHHHHhCCCCC----CcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC-----------
Q 028302          124 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS-----------  188 (210)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~-----------  188 (210)
                      +|++.|++..+++.++++.|..    ..+++|.||||||||+|+||+++|+++++|||+|++||++..+           
T Consensus       166 iL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~  245 (386)
T PLN03139        166 ILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKF  245 (386)
T ss_pred             HHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCcee
Confidence            9999999999999999999974    2467999999999999999999999999999999999987421           


Q ss_pred             -----CCcccCceeEEecCCCCCCCCC
Q 028302          189 -----HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       189 -----~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                           +++.++|.+++.+|+|+ +|+|
T Consensus       246 ~~~l~ell~~sDvV~l~lPlt~-~T~~  271 (386)
T PLN03139        246 EEDLDAMLPKCDVVVINTPLTE-KTRG  271 (386)
T ss_pred             cCCHHHHHhhCCEEEEeCCCCH-HHHH
Confidence                 14678999999999999 9986

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=5.4e-36  Score=271.05  Aligned_cols=162  Identities=28%  Similarity=0.460  Sum_probs=147.2

Q ss_pred             CCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHH
Q 028302           45 PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (210)
Q Consensus        45 ~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~  123 (210)
                      +.+++.+.++++|++++.. .++++++++++|+||||++.++|+|++|++++.++||.|+|+||+   |+.+||||++++
T Consensus        30 ~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~---~~~~vAE~~~~l  106 (525)
T TIGR01327        30 SREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTG---NTISAAEHALAM  106 (525)
T ss_pred             CHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCc---ChHHHHHHHHHH
Confidence            3466778889999988753 579999999999999999999999999999999999999999998   899999999999


Q ss_pred             HHHHHhhHHHHHHHHHhCCCCCC--cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC-------------
Q 028302          124 MLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS-------------  188 (210)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~-------------  188 (210)
                      +|+++|+++.+++.++++.|...  .+.+|.||||||||+|+||+.+|++|++|||+|++|||+..+             
T Consensus       107 ~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~  186 (525)
T TIGR01327       107 LLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDD  186 (525)
T ss_pred             HHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCC
Confidence            99999999999999999999753  468999999999999999999999999999999999985321             


Q ss_pred             --CCcccCceeEEecCCCCCCCCC
Q 028302          189 --HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       189 --~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                        +.+..+|.+++.+|+|+ +|+|
T Consensus       187 l~ell~~aDvV~l~lPlt~-~T~~  209 (525)
T TIGR01327       187 LDELLARADFITVHTPLTP-ETRG  209 (525)
T ss_pred             HHHHHhhCCEEEEccCCCh-hhcc
Confidence              14678999999999999 9987

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=9.6e-36  Score=259.43  Aligned_cols=194  Identities=21%  Similarity=0.245  Sum_probs=155.5

Q ss_pred             CcceEEEeCCCCCCchhhHHHHhhcCCCeEEec-----CCCCChhhhc-CCceEEEEc-CCCCCHHHHhcCCC--ceEEE
Q 028302           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-----VPISDVPDVI-ANYHLCVVK-TMRLDSNCISRANQ--MKLIM   81 (210)
Q Consensus        11 ~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~~-~~adv~i~~-~~~~~~~~l~~~p~--Lk~i~   81 (210)
                      .+++|+++.+..++  ...+.+.+..-++.+..     .+.+++.+.+ .++|++++. ..++++++++++|+  ||+|+
T Consensus        14 ~~~~v~~~~~~~~~--~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~   91 (386)
T PLN02306         14 GKYRVVSTKPMPGT--RWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFS   91 (386)
T ss_pred             CCceEEEeCCCCcH--HHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEE
Confidence            36688888764331  12222222212332211     2345566666 469988875 35799999999995  69999


Q ss_pred             EccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC-----CcccccccCeE
Q 028302           82 QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTV  156 (210)
Q Consensus        82 ~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~~~tv  156 (210)
                      +.++|+|+||++++.++||.|+|++|+   ++.+||||+++++|++.|++..+++.++++.|..     ..+.+|.||||
T Consensus        92 ~~~~G~D~iD~~aa~~~gI~V~n~pg~---~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktv  168 (386)
T PLN02306         92 NMAVGYNNVDVEAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTV  168 (386)
T ss_pred             ECCcccccccHHHHHHCCCEEEECCCc---CHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEE
Confidence            999999999999999999999999998   8899999999999999999999999999998742     13678999999


Q ss_pred             EEEecChHHHHHHHHhc-cCCCEEEEEcCCCCC------------------------------CCcccCceeEEecCCCC
Q 028302          157 FILGFGNIGVELAKRLR-PFGVKIIATKRSWAS------------------------------HSQVSCQSSGMLGPLSD  205 (210)
Q Consensus       157 GIiG~G~IG~~vA~~~~-~fg~~V~~~~~~~~~------------------------------~~~~~~~~~~~~~Plt~  205 (210)
                      ||||+|+||+++|++++ +|||+|++|||+.+.                              +.+.++|.+++.+|+|+
T Consensus       169 GIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~  248 (386)
T PLN02306        169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDK  248 (386)
T ss_pred             EEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCCh
Confidence            99999999999999985 999999999986531                              13578999999999999


Q ss_pred             CCCCC
Q 028302          206 GETHH  210 (210)
Q Consensus       206 ~~T~h  210 (210)
                       +|+|
T Consensus       249 -~T~~  252 (386)
T PLN02306        249 -TTYH  252 (386)
T ss_pred             -hhhh
Confidence             9987

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=4.1e-36  Score=257.67  Aligned_cols=193  Identities=19%  Similarity=0.305  Sum_probs=164.2

Q ss_pred             cceEEEeCCCCCCchhhHHHHhhcCCCeEEecCC---CCChhhhcCCceEEEEc-CCCCCHHHHhcCC--CceEEEEccc
Q 028302           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVK-TMRLDSNCISRAN--QMKLIMQFGV   85 (210)
Q Consensus        12 ~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p--~Lk~i~~~~a   85 (210)
                      ||||+++... +++.++..++++.+ ++++...+   .++..+.++++|++++. ..+++++.++++|  +||+|++.++
T Consensus         1 ~~~i~~~~~~-~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   78 (330)
T PRK12480          1 MTKIMFFGTR-DYEKEMALNWGKKN-NVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTA   78 (330)
T ss_pred             CcEEEEEeCc-HHHHHHHHHHHHhc-CeEEEEcCCCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccc
Confidence            4899999865 44477777777766 45554322   23446788999988875 4589999999997  9999999999


Q ss_pred             cCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCC--C-CcccccccCeEEEEecC
Q 028302           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--V-PTGETLLGKTVFILGFG  162 (210)
Q Consensus        86 G~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~--~-~~~~~l~~~tvGIiG~G  162 (210)
                      |+|++|++.+.++||.|+|+|++   ++++||||+++++|++.|++..+++.++++.|.  . ..+++|+|+||||||+|
T Consensus        79 G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G  155 (330)
T PRK12480         79 GFDMYDLDLAKKHNIVISNVPSY---SPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG  155 (330)
T ss_pred             ccchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCC
Confidence            99999999999999999999999   889999999999999999999999999998653  3 24689999999999999


Q ss_pred             hHHHHHHHHhccCCCEEEEEcCCCCC------------CCcccCceeEEecCCCCCCCCC
Q 028302          163 NIGVELAKRLRPFGVKIIATKRSWAS------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       163 ~IG~~vA~~~~~fg~~V~~~~~~~~~------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +||+.+|+++++|||+|++||++...            +.+..+|.++..+|+|+ +|+|
T Consensus       156 ~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~-~t~~  214 (330)
T PRK12480        156 RIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANK-ESYH  214 (330)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcH-HHHH
Confidence            99999999999999999999987531            15678999999999999 8865

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-35  Score=247.58  Aligned_cols=190  Identities=25%  Similarity=0.361  Sum_probs=166.2

Q ss_pred             eEEEeCCCCCCchhhHHHHhhcCCCeEEe-cCCCCChhhhcCCceEEEEc-CCCCCHHHHhc-CCCceEEEEccccCCcc
Q 028302           14 RVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVIANYHLCVVK-TMRLDSNCISR-ANQMKLIMQFGVGLEGV   90 (210)
Q Consensus        14 ~ili~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~-~p~Lk~i~~~~aG~d~i   90 (210)
                      +|+++.+...   .-++.+.+.+.++++. ..+.|++.+.++++|+++++ .+.++++.|+. ..+||+|.+.++|+|++
T Consensus         8 ~il~~e~~~~---~~~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNV   84 (406)
T KOG0068|consen    8 KILVAESLDQ---ACIEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNV   84 (406)
T ss_pred             eEEEecccch---HHHHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCcccc
Confidence            7888877532   3334444555566664 34566889999999988874 67899999994 56999999999999999


Q ss_pred             chhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC--CcccccccCeEEEEecChHHHHH
Q 028302           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGVEL  168 (210)
Q Consensus        91 d~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~~~tvGIiG~G~IG~~v  168 (210)
                      |++++.++||.|.|+|.+   |..++||+++++++++.|++.+....+++|+|..  ..+.+|+|||+||+|+|+||+++
T Consensus        85 DL~AAte~gi~Vvn~P~~---Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseV  161 (406)
T KOG0068|consen   85 DLKAATENGILVVNTPTA---NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEV  161 (406)
T ss_pred             ChhhHHhCCeEEEeCCCC---ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHHH
Confidence            999999999999999999   8899999999999999999999999999999986  48899999999999999999999


Q ss_pred             HHHhccCCCEEEEEcCCCCCC--------------CcccCceeEEecCCCCCCCCC
Q 028302          169 AKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       169 A~~~~~fg~~V~~~~~~~~~~--------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      |+++++|||+|++||+..+.+              .++.+|.+...+|||| +|+|
T Consensus       162 A~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP-~T~~  216 (406)
T KOG0068|consen  162 AVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTP-STEK  216 (406)
T ss_pred             HHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCc-chhh
Confidence            999999999999999965432              6899999999999999 9987

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=3e-34  Score=246.55  Aligned_cols=192  Identities=18%  Similarity=0.301  Sum_probs=157.8

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEec---CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCC--ceEEEEcccc
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVG   86 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~--Lk~i~~~~aG   86 (210)
                      ||+.++... +....+.+++.+.+ ++++..   ...++..+.++++|++++. ..+++++.++++|+  ||||+..|+|
T Consensus         2 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G   79 (332)
T PRK08605          2 TKIKIMSVR-DEDAPYIKAWAEKH-HVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAG   79 (332)
T ss_pred             cEEEEEecC-HHHHHHHHHHHHhc-CeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccc
Confidence            344444322 23356667776655 444321   2334556778899988764 46899999999996  9999999999


Q ss_pred             CCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC---CcccccccCeEEEEecCh
Q 028302           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGN  163 (210)
Q Consensus        87 ~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~~~tvGIiG~G~  163 (210)
                      +|++|++++.++||.|+|++++   ++.+||||+++++|+++|++..+++.++++.|..   ..+++|+|+||||||+|+
T Consensus        80 ~d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~  156 (332)
T PRK08605         80 FDTYDLELATKYNLIISNVPSY---SPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGR  156 (332)
T ss_pred             cchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCH
Confidence            9999999999999999999999   8899999999999999999999999999987642   246899999999999999


Q ss_pred             HHHHHHHHh-ccCCCEEEEEcCCCCC-------------CCcccCceeEEecCCCCCCCCC
Q 028302          164 IGVELAKRL-RPFGVKIIATKRSWAS-------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       164 IG~~vA~~~-~~fg~~V~~~~~~~~~-------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      ||+.+|+++ ++|||+|++||++...             +.+.++|.++..+|+|+ +|+|
T Consensus       157 IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~-~t~~  216 (332)
T PRK08605        157 IGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATK-YNHY  216 (332)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCc-chhh
Confidence            999999999 8999999999987532             14678999999999999 9976

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=8.1e-34  Score=241.69  Aligned_cols=187  Identities=17%  Similarity=0.207  Sum_probs=152.8

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCccch
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDI   92 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~   92 (210)
                      |.|++..+..+. ..+.+.+.+.+|++++..++.++    .+++|+++++.  .+.+.++ .|+||||++.++|+|++|.
T Consensus         1 ~~~~~~~~~~~~-~~~~~~l~~~~p~~~~~~~~~~~----~~~a~~~~~~~--~~~~~l~-~~~Lk~I~~~~aG~d~i~~   72 (312)
T PRK15469          1 MDIIFYHPTFDT-QWWIEALRKALPQARVRAWKSGD----NDPADYALVWH--PPVEMLA-GRDLKAVFALGAGVDSILS   72 (312)
T ss_pred             CEEEEeCCccCH-HHHHHHHHHHCCCCeEEecCCCC----CccCeEEEEeC--CChHHhc-cCCceEEEEcccccchhhh
Confidence            467777665332 44666666778888876544432    46789888754  3567776 6899999999999999984


Q ss_pred             hH-----HhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHH
Q 028302           93 NA-----ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVE  167 (210)
Q Consensus        93 ~~-----~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~  167 (210)
                      ..     +.++||.|+|+++.  +++.+||||+++++|++.|++..+.+.++++.|......+++|+||||||+|+||++
T Consensus        73 ~~~~~~~~~~~~i~v~~~~~~--~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~  150 (312)
T PRK15469         73 KLQAHPEMLDPSVPLFRLEDT--GMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSK  150 (312)
T ss_pred             hhccccccCCCCceEEEecCC--cccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHH
Confidence            32     44589999998763  278999999999999999999999999999999866567899999999999999999


Q ss_pred             HHHHhccCCCEEEEEcCCCCCC--------------CcccCceeEEecCCCCCCCCC
Q 028302          168 LAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       168 vA~~~~~fg~~V~~~~~~~~~~--------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +|+++++|||+|++||++.+..              .+.++|.+++.||+|+ +|+|
T Consensus       151 vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~-~T~~  206 (312)
T PRK15469        151 VAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTP-ETVG  206 (312)
T ss_pred             HHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCH-HHHH
Confidence            9999999999999999865431              3578999999999999 9986

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=8.2e-34  Score=240.56  Aligned_cols=147  Identities=22%  Similarity=0.312  Sum_probs=129.1

Q ss_pred             cCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHH
Q 028302           53 IANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN  132 (210)
Q Consensus        53 ~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~  132 (210)
                      ..++|++++...      +..+++||||++.++|+|++|.+++.++++.++|. |.   ++.+||||+++++|+++|+++
T Consensus        32 ~~~a~~~~~~~~------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~---~~~~VAE~~l~l~L~l~R~i~  101 (303)
T PRK06436         32 YYDAEAILIKGR------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GA---YSISVAEHAFALLLAWAKNIC  101 (303)
T ss_pred             cCCCCEEEecCC------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CC---CcHHHHHHHHHHHHHHHcChH
Confidence            457888865332      23368999999999999999999998888877774 66   889999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC-----------CcccCceeEEec
Q 028302          133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----------SQVSCQSSGMLG  201 (210)
Q Consensus       133 ~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~-----------~~~~~~~~~~~~  201 (210)
                      .+.+.++++.|....+.+|+||||||||+|+||+++|+++++|||+|++|||+..+.           .+.++|.+++.|
T Consensus       102 ~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~l  181 (303)
T PRK06436        102 ENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISL  181 (303)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECC
Confidence            999999999998766789999999999999999999999999999999999975321           367899999999


Q ss_pred             CCCCCCCCC
Q 028302          202 PLSDGETHH  210 (210)
Q Consensus       202 Plt~~~T~h  210 (210)
                      |+|+ +|+|
T Consensus       182 p~t~-~T~~  189 (303)
T PRK06436        182 PLTD-ETRG  189 (303)
T ss_pred             CCCc-hhhc
Confidence            9999 9987

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=9.2e-33  Score=239.48  Aligned_cols=171  Identities=22%  Similarity=0.323  Sum_probs=141.1

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEccccCCccc
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD   91 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~aG~d~id   91 (210)
                      |||++.... +    ...++++.+.++.... ..+...+.++++|+++++ ...+++++++ .|+||||++.++|+||||
T Consensus         1 mkIl~d~~~-~----~~~~~~~~~~ev~~~~-~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD   73 (378)
T PRK15438          1 MKILVDENM-P----YARELFSRLGEVKAVP-GRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVD   73 (378)
T ss_pred             CEEEEeCCc-c----hHHHHHhhcCcEEEeC-CCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccC
Confidence            588888653 2    3345666554554432 122335668999998875 4578999886 799999999999999999


Q ss_pred             hhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHH
Q 028302           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR  171 (210)
Q Consensus        92 ~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~  171 (210)
                      .+++.++||.|+|+||+   |+.+||||+++++|++.|+.                +.+|.||||||||+|+||+++|++
T Consensus        74 ~~~~~~~gI~v~napg~---na~aVAE~~~~~lL~l~r~~----------------g~~L~gktvGIIG~G~IG~~vA~~  134 (378)
T PRK15438         74 EAWLKQAGIGFSAAPGC---NAIAVVEYVFSSLLMLAERD----------------GFSLHDRTVGIVGVGNVGRRLQAR  134 (378)
T ss_pred             HHHHHHCCCEEEECCCc---CchHHHHHHHHHHHHHhccC----------------CCCcCCCEEEEECcCHHHHHHHHH
Confidence            99999999999999998   99999999999999999862                468999999999999999999999


Q ss_pred             hccCCCEEEEEcCCCCC-----------CCcccCceeEEecCCCCCC----CCC
Q 028302          172 LRPFGVKIIATKRSWAS-----------HSQVSCQSSGMLGPLSDGE----THH  210 (210)
Q Consensus       172 ~~~fg~~V~~~~~~~~~-----------~~~~~~~~~~~~~Plt~~~----T~h  210 (210)
                      +++|||+|++|||....           +++.++|.+++.+|||+ +    |+|
T Consensus       135 l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~-~g~~~T~~  187 (378)
T PRK15438        135 LEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFK-DGPYKTLH  187 (378)
T ss_pred             HHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCC-Cccccccc
Confidence            99999999999975321           14678999999999999 7    876

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=3.9e-32  Score=236.13  Aligned_cols=171  Identities=18%  Similarity=0.322  Sum_probs=141.2

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEEccccCCccc
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVD   91 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~p~Lk~i~~~~aG~d~id   91 (210)
                      |||++..+.     ++.+++++.+.++.... ..+...+.++++|+++++. .++++++++ .|+||||++.++|+||+|
T Consensus         1 mkI~~d~~~-----p~~~~~~~~~~~v~~~~-~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD   73 (381)
T PRK00257          1 MKIVADENI-----PLLDAFFAGFGEIRRLP-GRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHLD   73 (381)
T ss_pred             CEEEEecCc-----hhHHHHHhhCCcEEEcC-CcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCccccccC
Confidence            688888765     23355666555444332 1223356789999988753 579999998 589999999999999999


Q ss_pred             hhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHH
Q 028302           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR  171 (210)
Q Consensus        92 ~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~  171 (210)
                      .+++.++||.|+|+||+   |+.+||||+++++|++.|+                .+.+|.||||||||+|+||+.+|++
T Consensus        74 ~~~~~~~gI~v~napg~---na~aVAE~v~~~lL~l~r~----------------~g~~l~gktvGIIG~G~IG~~va~~  134 (381)
T PRK00257         74 LDYFAEAGITWSSAPGC---NARGVVDYVLGSLLTLAER----------------EGVDLAERTYGVVGAGHVGGRLVRV  134 (381)
T ss_pred             HHHHHHCCCEEEECCCc---ChHHHHHHHHHHHHHHhcc----------------cCCCcCcCEEEEECCCHHHHHHHHH
Confidence            99999999999999998   9999999999999999985                2568999999999999999999999


Q ss_pred             hccCCCEEEEEcCCCCC-----------CCcccCceeEEecCCCCCC----CCC
Q 028302          172 LRPFGVKIIATKRSWAS-----------HSQVSCQSSGMLGPLSDGE----THH  210 (210)
Q Consensus       172 ~~~fg~~V~~~~~~~~~-----------~~~~~~~~~~~~~Plt~~~----T~h  210 (210)
                      +++|||+|++||+....           +++.++|.++..+|+|+ +    |+|
T Consensus       135 l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~-~g~~~T~~  187 (381)
T PRK00257        135 LRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTK-EGEHPTRH  187 (381)
T ss_pred             HHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCC-Cccccccc
Confidence            99999999999985321           14578999999999998 5    776

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=99.97  E-value=1.4e-31  Score=226.71  Aligned_cols=156  Identities=35%  Similarity=0.506  Sum_probs=136.4

Q ss_pred             hhcCCceEEEE--cCCCCCHHHHhcC-CCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHH
Q 028302           51 DVIANYHLCVV--KTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGL  127 (210)
Q Consensus        51 ~~~~~adv~i~--~~~~~~~~~l~~~-p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~  127 (210)
                      +.+....+.+.  ....++.+.+... |+||+|.+.|+|+|++|++++++|||+|+|+|+.   +..+|||++++++|.+
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~---~~~~vAd~~~~lil~~  132 (336)
T KOG0069|consen   56 KRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDV---LTDDVADLAVSLLLAL  132 (336)
T ss_pred             hhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCc---chHHHHHHHHHHHHHH
Confidence            34444444443  2345777777776 8999999999999999999999999999999999   7799999999999999


Q ss_pred             HhhHHHHHHHHHhCCCCC----CcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC--------------
Q 028302          128 LRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------------  189 (210)
Q Consensus       128 ~R~~~~~~~~~~~~~w~~----~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~--------------  189 (210)
                      +|++...+++++++.|..    ..+..+.||||||+|+|+||+++|+||++|||.+.|++|+..+.              
T Consensus       133 ~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~  212 (336)
T KOG0069|consen  133 LRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIE  212 (336)
T ss_pred             HhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHH
Confidence            999999999999999942    36689999999999999999999999999999999999976522              


Q ss_pred             -CcccCceeEEecCCCCCCCCC
Q 028302          190 -SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       190 -~~~~~~~~~~~~Plt~~~T~h  210 (210)
                       .+..+|.++..||||+ +|+|
T Consensus       213 ~~~~~sD~ivv~~pLt~-~T~~  233 (336)
T KOG0069|consen  213 ELLANSDVIVVNCPLTK-ETRH  233 (336)
T ss_pred             HHHhhCCEEEEecCCCH-HHHH
Confidence             5789999999999999 9997

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.86  E-value=2.9e-22  Score=158.09  Aligned_cols=89  Identities=36%  Similarity=0.495  Sum_probs=78.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHhCCC---CCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC--------
Q 028302          121 IYLMLGLLRKQNEMRMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------  189 (210)
Q Consensus       121 l~~~L~~~R~~~~~~~~~~~~~w---~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~--------  189 (210)
                      ++++|++.|++..+++.++++.|   ....+++++|+||||||+|+||+++|+++++|||+|++|||+.++.        
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~   80 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV   80 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence            58999999999999999999999   5667899999999999999999999999999999999999987632        


Q ss_pred             -------CcccCceeEEecCCCCCCCCC
Q 028302          190 -------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       190 -------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                             .+.++|.+++.||+|+ +|+|
T Consensus        81 ~~~~l~ell~~aDiv~~~~plt~-~T~~  107 (178)
T PF02826_consen   81 EYVSLDELLAQADIVSLHLPLTP-ETRG  107 (178)
T ss_dssp             EESSHHHHHHH-SEEEE-SSSST-TTTT
T ss_pred             eeeehhhhcchhhhhhhhhcccc-ccce
Confidence                   5678999999999999 9997

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.71  E-value=1e-17  Score=125.95  Aligned_cols=98  Identities=24%  Similarity=0.407  Sum_probs=76.1

Q ss_pred             EEEeCCCCCCchhhHHHHhhc-CCCeEEec-CCCCChhhhcCCceEEEEcCCC-CCHHHHhcCCCceEEEEccccCCccc
Q 028302           15 VLFCGPHFPASHNYTKEYLQN-YPSIQVDV-VPISDVPDVIANYHLCVVKTMR-LDSNCISRANQMKLIMQFGVGLEGVD   91 (210)
Q Consensus        15 ili~~~~~~~~~~~~~~~~~~-~~~v~~~~-~~~~~~~~~~~~adv~i~~~~~-~~~~~l~~~p~Lk~i~~~~aG~d~id   91 (210)
                      ||++.+..++..    +.++. + ++.+.. .+.+++.+.++++|+++++... ++++.++.+|+||||++.|+|+|++|
T Consensus         1 ili~~~~~~~~~----~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   75 (133)
T PF00389_consen    1 ILITDPLPDEEI----ERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID   75 (133)
T ss_dssp             EEESSS-SHHHH----HHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-
T ss_pred             eEEeccCCHHHH----HHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc
Confidence            566765543332    33333 4 666654 2345677889999999987655 99999999999999999999999999


Q ss_pred             hhHHhhCCcEEEecCCCCCCCchhHHHHH
Q 028302           92 INAATRCGIKVARIPGDVTGNAASCAELT  120 (210)
Q Consensus        92 ~~~~~~~gi~v~~~~~~~~~~a~~vAE~~  120 (210)
                      ++++.++||.|+|+||+   ++.+||||+
T Consensus        76 ~~~a~~~gI~V~n~~g~---~~~aVAE~a  101 (133)
T PF00389_consen   76 LEAAKERGIPVTNVPGY---NAEAVAEHA  101 (133)
T ss_dssp             HHHHHHTTSEEEE-TTT---THHHHHHHH
T ss_pred             HHHHhhCeEEEEEeCCc---CCcchhccc
Confidence            99999999999999999   889999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.68  E-value=2.6e-16  Score=132.88  Aligned_cols=128  Identities=20%  Similarity=0.275  Sum_probs=105.0

Q ss_pred             hcCCceEEEEcCC-----------------CCCHHHHhcCCCceEEEEccccCCccchh-HHhhCCcEEE------ecCC
Q 028302           52 VIANYHLCVVKTM-----------------RLDSNCISRANQMKLIMQFGVGLEGVDIN-AATRCGIKVA------RIPG  107 (210)
Q Consensus        52 ~~~~adv~i~~~~-----------------~~~~~~l~~~p~Lk~i~~~~aG~d~id~~-~~~~~gi~v~------~~~~  107 (210)
                      .+.++|++|....                 ++++++++.+|   .++...+|+++.|++ .+.++||.|+      |++.
T Consensus        51 ~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~  127 (287)
T TIGR02853        51 DLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAI  127 (287)
T ss_pred             hhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEE
Confidence            3788998886311                 25688888888   377788999999988 8899999999      8877


Q ss_pred             CCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          108 DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       108 ~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +   |+.++||+++++++..                   .+.+++|++++|+|+|.||+.+|++|++||++|++++|+..
T Consensus       128 ~---n~~~~Ae~ai~~al~~-------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       128 Y---NSIPTAEGAIMMAIEH-------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             E---ccHhHHHHHHHHHHHh-------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            7   8899999999977743                   13489999999999999999999999999999999999753


Q ss_pred             C------------------CCcccCceeEEecCCC
Q 028302          188 S------------------HSQVSCQSSGMLGPLS  204 (210)
Q Consensus       188 ~------------------~~~~~~~~~~~~~Plt  204 (210)
                      .                  +.+.++|.+++.+|++
T Consensus       186 ~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~  220 (287)
T TIGR02853       186 DLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL  220 (287)
T ss_pred             HHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH
Confidence            2                  1346788888888864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.68  E-value=6.4e-17  Score=137.09  Aligned_cols=145  Identities=23%  Similarity=0.389  Sum_probs=129.7

Q ss_pred             cCCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhC
Q 028302           62 KTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK  141 (210)
Q Consensus        62 ~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~  141 (210)
                      .+..++++-+++++.||++...+.|+|++|+.++.+-+|.|||.++.   .-+.+|+-++.++|.++|+-....+.++++
T Consensus        81 h~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~---~Ve~~a~stl~hIl~l~rrntw~cq~l~eg  157 (435)
T KOG0067|consen   81 HTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD---AVEETADSTLCHILNLYRRNTWLCQALREG  157 (435)
T ss_pred             eecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccch---hHHHHHHHHHHHHHhhhcccchhhhhhccc
Confidence            34668899999999999999999999999999999999999999998   558999999999999999999999999999


Q ss_pred             CCCCC---------cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC---------------CcccCcee
Q 028302          142 KLGVP---------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSS  197 (210)
Q Consensus       142 ~w~~~---------~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~---------------~~~~~~~~  197 (210)
                      .|.+.         .....+|.++|++|+|.+|++|+.++++||+.|+.||++..+.               ++.+++.+
T Consensus       158 ~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~  237 (435)
T KOG0067|consen  158 TCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCV  237 (435)
T ss_pred             ceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccce
Confidence            88642         3467889999999999999999999999999999999986533               67888888


Q ss_pred             EEecCCCCCCCCC
Q 028302          198 GMLGPLSDGETHH  210 (210)
Q Consensus       198 ~~~~Plt~~~T~h  210 (210)
                      ...|-+.+ .++|
T Consensus       238 S~hc~~~~-~~h~  249 (435)
T KOG0067|consen  238 SLHCNLNE-HNHE  249 (435)
T ss_pred             eeecccCc-cccc
Confidence            88888887 7765

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.36  E-value=1.3e-11  Score=104.89  Aligned_cols=132  Identities=19%  Similarity=0.230  Sum_probs=98.9

Q ss_pred             hhcCCceEEEEcCC-----------------CCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCC---
Q 028302           51 DVIANYHLCVVKTM-----------------RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT---  110 (210)
Q Consensus        51 ~~~~~adv~i~~~~-----------------~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~---  110 (210)
                      +.+.++|+++....                 .++.+.++.+|++..+. .|.+.++++ +.+.++||.+.+..+...   
T Consensus        51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~  128 (296)
T PRK08306         51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI  128 (296)
T ss_pred             HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence            45788998886421                 13678999999997544 588888988 678899999998764300   


Q ss_pred             CCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC--
Q 028302          111 GNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS--  188 (210)
Q Consensus       111 ~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~--  188 (210)
                      -|+.++||.++...+..                   ...++.+++++|+|+|.+|+.+++.|+.+|++|.++||++..  
T Consensus       129 ~ns~~~aegav~~a~~~-------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~  189 (296)
T PRK08306        129 LNSIPTAEGAIMMAIEH-------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLA  189 (296)
T ss_pred             hccHhHHHHHHHHHHHh-------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            16788888877654321                   135688999999999999999999999999999999998532  


Q ss_pred             ----------------CCcccCceeEEecCC
Q 028302          189 ----------------HSQVSCQSSGMLGPL  203 (210)
Q Consensus       189 ----------------~~~~~~~~~~~~~Pl  203 (210)
                                      +...++|.+++..|.
T Consensus       190 ~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~  220 (296)
T PRK08306        190 RITEMGLSPFHLSELAEEVGKIDIIFNTIPA  220 (296)
T ss_pred             HHHHcCCeeecHHHHHHHhCCCCEEEECCCh
Confidence                            123566777776663

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.24  E-value=3.1e-11  Score=107.43  Aligned_cols=97  Identities=16%  Similarity=0.202  Sum_probs=74.7

Q ss_pred             CCceEEE-EccccCCccch-hHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccc
Q 028302           75 NQMKLIM-QFGVGLEGVDI-NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL  152 (210)
Q Consensus        75 p~Lk~i~-~~~aG~d~id~-~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~  152 (210)
                      ++++-+. -.++|+..+-. ...-.-+|+|+|++++   +..+++|+++++++++...+      ++.+      +..+.
T Consensus       189 ~~i~G~~EeTttGv~rl~~m~~~g~L~iPV~nv~d~---~tk~~aD~~~G~~~s~~d~~------~R~~------~~~La  253 (476)
T PTZ00075        189 KKIVGVSEETTTGVHRLYKMLKKGELLFPAINVNDS---VTKSKFDNIYGCRHSLIDGI------FRAT------DVMIA  253 (476)
T ss_pred             hccEeeeecchHHHHHHHHHHHCCCCCceEEEeCCc---chHHHHHHHHHHHHHHHHHH------HHhc------CCCcC
Confidence            3444333 45777776532 1122358999999999   77999999999999988333      3332      45899


Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |++|||+|+|.||+.+|++|++|||+|+++++.+
T Consensus       254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp  287 (476)
T PTZ00075        254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDP  287 (476)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            9999999999999999999999999999997653

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.95  E-value=4.7e-10  Score=95.37  Aligned_cols=60  Identities=33%  Similarity=0.439  Sum_probs=50.7

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC---------------CCcccCceeEEecCCCCCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS---------------HSQVSCQSSGMLGPLSDGETH  209 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~---------------~~~~~~~~~~~~~Plt~~~T~  209 (210)
                      ...|+||||||||+|+||+++|++|++|||+|++|++..++               +....+|.+.+++|. + +|+
T Consensus        11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~-~t~   85 (335)
T PRK13403         11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-E-QQA   85 (335)
T ss_pred             hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-h-HHH
Confidence            46799999999999999999999999999999999765332               146679999999997 5 554

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.26  E-value=2.1e-06  Score=76.25  Aligned_cols=97  Identities=22%  Similarity=0.270  Sum_probs=63.1

Q ss_pred             CceEE-EEccccCCccc-hhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCccccccc
Q 028302           76 QMKLI-MQFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (210)
Q Consensus        76 ~Lk~i-~~~~aG~d~id-~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~  153 (210)
                      +++-+ =-.++|+..+- .....+.+++|.|++.+.+   .+.-|...+.--+....+.+            .....+.|
T Consensus       148 ~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~---K~~~dn~~gt~~s~~~ai~r------------at~~~l~G  212 (425)
T PRK05476        148 NIKGVTEETTTGVHRLYAMAKDGALKFPAINVNDSVT---KSKFDNRYGTGESLLDGIKR------------ATNVLIAG  212 (425)
T ss_pred             ccEeeeecchHHHHHHHHHHHcCCCCCCEEecCCccc---CccccccHHHHhhhHHHHHH------------hccCCCCC
Confidence            43433 34577877753 2222346899999999844   44333222222221111111            11335899


Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++++|+|+|.||+.+|++|++||++|+++|+.+.
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            9999999999999999999999999999998754

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=98.17  E-value=2.1e-06  Score=73.84  Aligned_cols=57  Identities=26%  Similarity=0.301  Sum_probs=46.4

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC----------------CcccCceeEEecCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGMLGPLS  204 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------------~~~~~~~~~~~~Plt  204 (210)
                      ...|++++|||||+|++|+++|+.|+.+|++|+++++.....                ....+|.+++.+|.+
T Consensus        12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~   84 (330)
T PRK05479         12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDE   84 (330)
T ss_pred             hhhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHH
Confidence            467899999999999999999999999999999887653211                345678888888854

>PLN02494 adenosylhomocysteinase

Probab=98.14  E-value=2.4e-06  Score=76.40  Aligned_cols=39  Identities=26%  Similarity=0.474  Sum_probs=35.9

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+.|++++|+|+|.||+.+|+++++|||+|+++++.+.
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~  288 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI  288 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            458899999999999999999999999999999988653

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.04  E-value=5.7e-06  Score=66.43  Aligned_cols=39  Identities=36%  Similarity=0.537  Sum_probs=36.6

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.+++|++++|+|+|++|+.+|+.|..+|++|+++|++.
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            567999999999999999999999999999999999864

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.94  E-value=8.1e-06  Score=63.13  Aligned_cols=39  Identities=31%  Similarity=0.601  Sum_probs=30.6

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.||++.|+|||.+|+.+|+.|+++|++|+.++..|
T Consensus        18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            467999999999999999999999999999999999876

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.93  E-value=1e-05  Score=71.54  Aligned_cols=38  Identities=34%  Similarity=0.516  Sum_probs=35.3

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.|++|+|+|+|.||+.+|+++++||++|+++|+.+
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            45899999999999999999999999999999998765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=97.89  E-value=1.7e-05  Score=68.02  Aligned_cols=53  Identities=32%  Similarity=0.355  Sum_probs=40.9

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC----------------CcccCceeEEecCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGMLGPL  203 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------------~~~~~~~~~~~~Pl  203 (210)
                      |+|++|||||+|++|+++|+.|+.+|++|+++++...+.                ....+|.+++.+|-
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp   69 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPD   69 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCc
Confidence            579999999999999999999999999988765432111                24557777777773

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.79  E-value=4.5e-05  Score=67.59  Aligned_cols=40  Identities=28%  Similarity=0.488  Sum_probs=36.5

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +..+.|++|+|+|+|.||+.+|++++++|++|+++|+.+.
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            4568999999999999999999999999999999988653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.78  E-value=1e-05  Score=62.69  Aligned_cols=51  Identities=20%  Similarity=0.281  Sum_probs=38.4

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC----------------CCcccCceeEEecCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS----------------HSQVSCQSSGMLGPLS  204 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~----------------~~~~~~~~~~~~~Plt  204 (210)
                      ++||+||+|++|+.+|+.|..-|.+|.+|||++..                +....+|.++..+|-.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~   68 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDD   68 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccc
Confidence            68999999999999999999999999999998521                1344557777777754

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.70  E-value=5.9e-05  Score=64.36  Aligned_cols=52  Identities=21%  Similarity=0.125  Sum_probs=44.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC---CcccCceeEEecCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---SQVSCQSSGMLGPL  203 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~---~~~~~~~~~~~~Pl  203 (210)
                      .+++|||||+|++|+.+|+.+...|.+|..|+|+....   ....+|.++..+|.
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~   57 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSM   57 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECCh
Confidence            45789999999999999999999999999999976544   34567888888875

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=97.69  E-value=2.8e-05  Score=69.11  Aligned_cols=58  Identities=26%  Similarity=0.285  Sum_probs=42.3

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC------CCC---------------CCcccCceeEEecCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS------WAS---------------HSQVSCQSSGMLGPLSD  205 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~------~~~---------------~~~~~~~~~~~~~Plt~  205 (210)
                      ...|+||||+|||+|+||++-|.-++..|.+|++--|.      .++               +..+.+|.+++++|.|.
T Consensus        31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt~  109 (487)
T PRK05225         31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQ  109 (487)
T ss_pred             hHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChHH
Confidence            47899999999999999996666666666666621111      111               14788999999999874

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=97.45  E-value=0.0001  Score=56.93  Aligned_cols=52  Identities=31%  Similarity=0.439  Sum_probs=38.5

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC----------------CcccCceeEEecC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGMLGP  202 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------------~~~~~~~~~~~~P  202 (210)
                      |++|||.|||||+-|.+.|.-||.-|++|++-.|..++.                ....+|.+.+++|
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~P   69 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLP   69 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCC
Confidence            689999999999999999999999999999887765421                3566777777776

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PLN02712 arogenate dehydrogenase

Probab=97.44  E-value=0.00014  Score=68.29  Aligned_cols=39  Identities=33%  Similarity=0.349  Sum_probs=36.0

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.++.+++|||||+|.||+.+|+.++.+|.+|++||++.
T Consensus       364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~  402 (667)
T PLN02712        364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSD  402 (667)
T ss_pred             cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECCh
Confidence            467789999999999999999999999999999999874

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.36  E-value=0.00044  Score=56.62  Aligned_cols=37  Identities=41%  Similarity=0.583  Sum_probs=33.9

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .++.+++|.|.|||++|+.+|++|..+|++|+++..+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6789999999999999999999999999999976544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.30  E-value=0.0047  Score=54.18  Aligned_cols=127  Identities=13%  Similarity=0.001  Sum_probs=69.5

Q ss_pred             CceEEEEcCCCCCHHHHhcC-CCceEEEEccccCCccchhHHhhCCcEEEecCCCCC-----CCchhHHHHHHHHHHHHH
Q 028302           55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT-----GNAASCAELTIYLMLGLL  128 (210)
Q Consensus        55 ~adv~i~~~~~~~~~~l~~~-p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~-----~~a~~vAE~~l~~~L~~~  128 (210)
                      ++|+++--.. +..+.++.+ ++--++.......+....+.+.++++.....-....     .--.++|+.+=.......
T Consensus        66 ~~dii~~Vk~-p~~~~~~~~~~g~~l~~~~~~a~~~~~~~~l~~~~~t~i~~e~i~~~~~~~~~l~~~~~iaG~~av~~a  144 (370)
T TIGR00518        66 DAELVLKVKE-PLPEEYGYLRHGQILFTYLHLAAERALTDALLDSGTTAIAYETVQTADGALPLLAPMSEVAGRLAAQVG  144 (370)
T ss_pred             cCCEEEEeCC-CCHHHHhhcCCCcEEEEEeccCCCHHHHHHHHHcCCeEEEeeeeeccCCCCccccchhHHHHHHHHHHH
Confidence            4888874333 344445554 455555555554565556677777776654222100     000123333222111111


Q ss_pred             -hhHHHHHHHHHhCCCC-CCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          129 -RKQNEMRMAIEQKKLG-VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       129 -R~~~~~~~~~~~~~w~-~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                       ..+..   .. .|+-. ......+.+.+|.|+|.|.+|+.+++.++.+|++|.++|++.
T Consensus       145 a~~~~~---~~-~g~~~~~~~~~~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       145 AYHLEK---TQ-GGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             HHHhHh---hc-CCcceeecCCCCCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence             11111   10 01100 011234678899999999999999999999999999999863

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.24  E-value=0.0011  Score=58.12  Aligned_cols=53  Identities=19%  Similarity=0.133  Sum_probs=43.0

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCCC---CcccCceeEEecCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH---SQVSCQSSGMLGPLS  204 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~~---~~~~~~~~~~~~Plt  204 (210)
                      ..++|+||| +|.+|+.+|+.++.-|.+|.+||+.....   ....+|.++..+|..
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~  153 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIH  153 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHH
Confidence            558999999 99999999999999999999999864322   345677777777743

>PLN02256 arogenate dehydrogenase

Probab=97.21  E-value=0.00043  Score=59.11  Aligned_cols=36  Identities=39%  Similarity=0.427  Sum_probs=33.0

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -++++|||||+|.||+.+|+.++.+|.+|++||++.
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            356799999999999999999999999999999874

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.20  E-value=0.0011  Score=55.22  Aligned_cols=37  Identities=38%  Similarity=0.525  Sum_probs=34.0

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      +.++.|+||.|-|||++|+.+|+.|..+|++|++++.
T Consensus        33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD   69 (254)
T cd05313          33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD   69 (254)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            4689999999999999999999999999999996654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.08  E-value=0.0013  Score=53.56  Aligned_cols=36  Identities=42%  Similarity=0.613  Sum_probs=32.4

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      .+|.|+||.|.|||++|+.+|+.|...|.+|++++.
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD   54 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSD   54 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEc
Confidence            578999999999999999999999999998777543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.06  E-value=0.0017  Score=44.76  Aligned_cols=36  Identities=42%  Similarity=0.642  Sum_probs=33.2

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccC-CCEEEEEcC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~f-g~~V~~~~~  184 (210)
                      ..+.+++++|+|.|.+|+.+++.+..+ +.+|..|||
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            568999999999999999999999988 678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.95  E-value=0.00072  Score=47.26  Aligned_cols=33  Identities=36%  Similarity=0.521  Sum_probs=29.3

Q ss_pred             eEEEEecChHHHHHHHHhccCC---CEEE-EEcCCCC
Q 028302          155 TVFILGFGNIGVELAKRLRPFG---VKII-ATKRSWA  187 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~~fg---~~V~-~~~~~~~  187 (210)
                      ||||||+|++|+++++.+..-|   .+|. +++|++.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~   37 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE   37 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence            6999999999999999999999   9999 4488753

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.92  E-value=0.0021  Score=57.62  Aligned_cols=35  Identities=26%  Similarity=0.596  Sum_probs=33.3

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEE
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT  182 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~  182 (210)
                      +.++.|+||.|.|||++|+.+|+.|..+|++|+++
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVav  261 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTC  261 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            46799999999999999999999999999999998

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.91  E-value=0.002  Score=56.50  Aligned_cols=53  Identities=21%  Similarity=0.216  Sum_probs=41.7

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhcc-CCCEEEEEcCCCCC-----CCcccCceeEEecCC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRP-FGVKIIATKRSWAS-----HSQVSCQSSGMLGPL  203 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~-fg~~V~~~~~~~~~-----~~~~~~~~~~~~~Pl  203 (210)
                      +...||+|||+ |-||+.+|+.++. ++.+|++||+.-..     +....+|.++...|.
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv   61 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQRADVLIFSAPI   61 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhcCCCEEEEeCCH
Confidence            34679999999 9999999999994 69999999984321     135567877777774

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.85  E-value=0.0012  Score=49.59  Aligned_cols=38  Identities=32%  Similarity=0.478  Sum_probs=35.6

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~  186 (210)
                      .+++++++.|||.|.+|+.++..|...|++ |..++|+.
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            479999999999999999999999999997 99999975

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN02712 arogenate dehydrogenase

Probab=96.80  E-value=0.0017  Score=61.19  Aligned_cols=39  Identities=36%  Similarity=0.489  Sum_probs=34.2

Q ss_pred             cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ....-+.++|||||+|.||+.+|+.++.+|.+|.+||++
T Consensus        46 ~~~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~   84 (667)
T PLN02712         46 NPDNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRS   84 (667)
T ss_pred             CCccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            334455679999999999999999999999999999986

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.78  E-value=0.014  Score=53.26  Aligned_cols=123  Identities=11%  Similarity=0.058  Sum_probs=74.4

Q ss_pred             CceEEEEcCCCCCHHHHhcCC-CceEEEEccccCCccchhHHhhCCcEEEecCCCC--C-----CCchhHHHHHHHHHHH
Q 028302           55 NYHLCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--T-----GNAASCAELTIYLMLG  126 (210)
Q Consensus        55 ~adv~i~~~~~~~~~~l~~~p-~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~--~-----~~a~~vAE~~l~~~L~  126 (210)
                      ++|+++-- .+++.+.++.++ +--+|....-..|.=.++.+.+++|.+...-...  +     .-=.++|+.+=     
T Consensus        65 ~~diilkV-~~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG-----  138 (509)
T PRK09424         65 QSDIILKV-NAPSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG-----  138 (509)
T ss_pred             cCCEEEEe-CCCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH-----
Confidence            58888853 334555577774 5666666666556556667788998887632210  0     00123333322     


Q ss_pred             HHhhHHHHHHHHHhCCCCCC---cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          127 LLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       127 ~~R~~~~~~~~~~~~~w~~~---~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                       +|-+....+..  ++....   ......+.+|.|+|.|.||...++.++.+|++|+++|+++
T Consensus       139 -y~Av~~aa~~~--~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        139 -YRAVIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             -HHHHHHHHHHh--cccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence             22222211111  111110   1124569999999999999999999999999999999875

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.77  E-value=0.0034  Score=56.15  Aligned_cols=37  Identities=27%  Similarity=0.482  Sum_probs=34.4

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      +.+|.|+||.|.|+|++|+..|+.|..+|++|++++.
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD  259 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD  259 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            4579999999999999999999999999999999665

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.75  E-value=0.025  Score=51.63  Aligned_cols=125  Identities=10%  Similarity=0.067  Sum_probs=73.6

Q ss_pred             CceEEEEcCCCCCHHHHhcC-CCceEEEEccccCCccchhHHhhCCcEEEecCCCC--C-----CCchhHHHHHHHHH-H
Q 028302           55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--T-----GNAASCAELTIYLM-L  125 (210)
Q Consensus        55 ~adv~i~~~~~~~~~~l~~~-p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~--~-----~~a~~vAE~~l~~~-L  125 (210)
                      ++|+++-- .+++.+.++.+ ++--+|....-..|.=.++.+.+++|.+...-..-  +     .-=.++|+.+=+.. +
T Consensus        64 ~adiIlkV-~~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Avi  142 (511)
T TIGR00561        64 QSDIILKV-NAPSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAII  142 (511)
T ss_pred             cCCEEEEe-CCCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHHH
Confidence            57888743 33455557776 46666666665555555667788998887633110  1     00123333332111 1


Q ss_pred             HHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          126 GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       126 ~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+..+.++   + .|.-. .. ..+.+.++.|+|.|.+|...++.++.+|++|+++|++.
T Consensus       143 ~Aa~~lgr~---~-~g~~t-aa-g~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       143 EAAHEFGRF---F-TGQIT-AA-GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             HHHHHhhhh---c-CCcee-cC-CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            111111111   0 11111 11 24557899999999999999999999999999999875

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PLN02477 glutamate dehydrogenase

Probab=96.72  E-value=0.0038  Score=55.43  Aligned_cols=37  Identities=38%  Similarity=0.617  Sum_probs=33.7

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      +.+|.|+||.|.|||++|+.+|+.|...|++|++++.
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD  237 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSD  237 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEC
Confidence            4589999999999999999999999999999996543

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.71  E-value=0.0018  Score=54.79  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=31.1

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|||||.|.+|..+|+.+...|++|+.||++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            689999999999999999999999999999865

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.70  E-value=0.0029  Score=53.84  Aligned_cols=56  Identities=13%  Similarity=0.029  Sum_probs=46.3

Q ss_pred             ccccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecCC
Q 028302          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGPL  203 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~Pl  203 (210)
                      +.++.||+|+|||.| .+|+.+|.+|..-|++|..|+++.+.  +...++|.++..++-
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~  212 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGR  212 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCC
Confidence            568999999999996 99999999999999999999875432  345677877777654

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.69  E-value=0.0016  Score=55.45  Aligned_cols=35  Identities=26%  Similarity=0.408  Sum_probs=33.8

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|+.+||+|+|.+|.--.+.+||||++|+++|++.
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~  215 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSS  215 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCc
Confidence            79999999999999999999999999999999986

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.68  E-value=0.0027  Score=49.59  Aligned_cols=54  Identities=20%  Similarity=0.153  Sum_probs=44.6

Q ss_pred             cccccCeEEEEecChH-HHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecC
Q 028302          149 ETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGP  202 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~I-G~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~P  202 (210)
                      .++.|+++.|||.|.+ |+.+|+.|...|++|...+|+.+.  +.+.++|.++..-+
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~   96 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVG   96 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCC
Confidence            5799999999999995 999999999999999999987543  35677777776643

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=96.62  E-value=0.0022  Score=55.47  Aligned_cols=38  Identities=37%  Similarity=0.596  Sum_probs=34.8

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      --+.||++.|.|||..|+-+|.+++++|++|+++.-.|
T Consensus       205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDP  242 (420)
T COG0499         205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDP  242 (420)
T ss_pred             eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCc
Confidence            45789999999999999999999999999999987655

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.61  E-value=0.0037  Score=53.25  Aligned_cols=35  Identities=37%  Similarity=0.624  Sum_probs=30.7

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC--EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~--~V~~~~~~~  186 (210)
                      ..++|+|||+|.||..+|+.++..|.  +|++||++.
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            34789999999999999999997774  899999874

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.56  E-value=0.0038  Score=52.72  Aligned_cols=55  Identities=18%  Similarity=0.155  Sum_probs=46.9

Q ss_pred             ccccccCeEEEEecChH-HHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecC
Q 028302          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGP  202 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~I-G~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~P  202 (210)
                      +.++.||++.|||.|.+ |+.+|.+|...|++|..++.+.+.  +...++|.++...|
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG  210 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVG  210 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCC
Confidence            46899999999999999 999999999999999988764432  36788888888776

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.55  E-value=0.0024  Score=54.95  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=31.8

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++|||||.|.+|..+|..+...|++|+.||+++.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6899999999999999999999999999999753

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=96.52  E-value=0.0024  Score=53.91  Aligned_cols=56  Identities=18%  Similarity=0.202  Sum_probs=47.0

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC----------------CCcccCceeEEecCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS----------------HSQVSCQSSGMLGPLS  204 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~----------------~~~~~~~~~~~~~Plt  204 (210)
                      ...+.++||.||+|+.|..++.-|-.-|.+|++|||+.+.                ++...+|+++..+|..
T Consensus        31 ~~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~  102 (327)
T KOG0409|consen   31 ITPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNP  102 (327)
T ss_pred             CCcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCCh
Confidence            4457899999999999999999999999999999997532                2567788888887754

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.52  E-value=0.00086  Score=53.88  Aligned_cols=44  Identities=30%  Similarity=0.459  Sum_probs=39.1

Q ss_pred             CCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       142 ~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      .|.......|.+++|.|+|.|.+|..+|+.|...|+ ++..+|+.
T Consensus        10 ~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        10 DIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             hcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            466555678999999999999999999999999998 89999975

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.52  E-value=0.0055  Score=43.76  Aligned_cols=37  Identities=27%  Similarity=0.382  Sum_probs=32.7

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++|++|.|||.|.+|.+-++.|...|++|+.+++..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            6899999999999999999999999999999999873

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.50  E-value=0.0035  Score=56.38  Aligned_cols=38  Identities=26%  Similarity=0.368  Sum_probs=34.7

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.+++|+|+|+|..|+.+|+.|+..|++|.++|+..
T Consensus        10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             hhhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            44678999999999999999999999999999999764

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.49  E-value=0.0072  Score=54.11  Aligned_cols=34  Identities=38%  Similarity=0.637  Sum_probs=32.5

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEE
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA  181 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~  181 (210)
                      +.+|.|+||.|=|||++|+..|+.|..+|++|++
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVa  256 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVT  256 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            4579999999999999999999999999999999

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.49  E-value=0.0037  Score=47.36  Aligned_cols=37  Identities=38%  Similarity=0.568  Sum_probs=33.0

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~  186 (210)
                      .+.+++++|+|.|.+|+.+++.+...| .+|..+||+.
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            467899999999999999999999886 7899999864

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN02858 fructose-bisphosphate aldolase

Probab=96.48  E-value=0.0013  Score=66.48  Aligned_cols=53  Identities=11%  Similarity=0.092  Sum_probs=43.1

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC----------------CCcccCceeEEecCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS----------------HSQVSCQSSGMLGPLSD  205 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~----------------~~~~~~~~~~~~~Plt~  205 (210)
                      .++||+||+|++|..+|+.|...|.+|.+||+++..                +....+|.++..+|..+
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~  392 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEV  392 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChH
Confidence            489999999999999999999999999999987532                13456777777777544

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=96.39  E-value=0.0056  Score=51.85  Aligned_cols=53  Identities=32%  Similarity=0.412  Sum_probs=43.4

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC----------------CcccCceeEEecC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGMLGP  202 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------------~~~~~~~~~~~~P  202 (210)
                      -|.||||+|||||+-|.+=|.-||.-|.+|++=-|..+..                ..+.+|.+.+++|
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~P   83 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLP   83 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCc
Confidence            6899999999999999999999999999987655544331                4677777777777

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.36  E-value=0.006  Score=51.48  Aligned_cols=34  Identities=35%  Similarity=0.507  Sum_probs=28.2

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEE--EEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKI--IATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V--~~~~~~~  186 (210)
                      .++|+|+|+|.||+.+|+.++.-|..|  +++|++.
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~   38 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSA   38 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcH
Confidence            478999999999999999999777766  5666553

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.34  E-value=0.0035  Score=51.92  Aligned_cols=53  Identities=19%  Similarity=0.316  Sum_probs=42.2

Q ss_pred             HHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       133 ~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      +|.++..-..|.......|++++|+|+|.|.+|..+|+.|...|. ++..+|..
T Consensus        12 rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         12 RYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             HHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            444444334576556678999999999999999999999998898 78888864

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.34  E-value=0.0042  Score=55.37  Aligned_cols=38  Identities=34%  Similarity=0.588  Sum_probs=34.8

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~~  187 (210)
                      .+.+++|+|+|.|.+|+.+++.|+.+| .+|+.++|+..
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~  215 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYE  215 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            588999999999999999999999999 68999999753

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.29  E-value=0.0014  Score=53.53  Aligned_cols=44  Identities=27%  Similarity=0.410  Sum_probs=38.1

Q ss_pred             CCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       142 ~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      .|.......|.+++|.|+|+|.+|.++|+.|...|+ ++..+|..
T Consensus        10 ~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          10 EIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             hcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            465555678999999999999999999999999999 68888864

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=96.24  E-value=0.0043  Score=55.01  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=28.2

Q ss_pred             CeEEEEecChHHHHHHHHhcc-CCCEEEEE-cCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRP-FGVKIIAT-KRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~-fg~~V~~~-~~~~  186 (210)
                      .+|||.|||+|||.++|.+.. ++++|++. |+..
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~  120 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFI  120 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCC
Confidence            599999999999999999884 89999984 4443

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.22  E-value=0.003  Score=50.55  Aligned_cols=43  Identities=21%  Similarity=0.440  Sum_probs=38.5

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      |.......|.+++|.|+|+|.+|.++++.|...|+ ++..+|+.
T Consensus        11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            76666788999999999999999999999999999 58888865

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.22  E-value=0.0053  Score=51.86  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=31.1

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|.+|..+|..+...|.+|+.||++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            689999999999999999999999999999875

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.21  E-value=0.0067  Score=51.33  Aligned_cols=55  Identities=13%  Similarity=0.068  Sum_probs=46.0

Q ss_pred             ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecC
Q 028302          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGP  202 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~P  202 (210)
                      +.++.||++.|||.|. +|+.+|.+|...|++|..++++.+.  +...++|.++...+
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg  210 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVG  210 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCC
Confidence            4579999999999999 9999999999999999998875432  35677887777654

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=96.07  E-value=0.0084  Score=48.47  Aligned_cols=58  Identities=21%  Similarity=0.210  Sum_probs=44.0

Q ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHH--hccCCCEEEE-EcCC
Q 028302          112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR--LRPFGVKIIA-TKRS  185 (210)
Q Consensus       112 ~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~--~~~fg~~V~~-~~~~  185 (210)
                      .+.+.++|.+..++...|++..               .. ..++++|+|+|++|+.+++.  ....|+++.+ +|+.
T Consensus        59 ~G~~~~gy~v~~l~~~~~~~l~---------------~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d  119 (213)
T PRK05472         59 FGKRGVGYNVEELLEFIEKILG---------------LD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD  119 (213)
T ss_pred             cCCCCCCeeHHHHHHHHHHHhC---------------CC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence            3456677889999998888852               11 34689999999999999986  3478999886 5553

>PLN02858 fructose-bisphosphate aldolase

Probab=96.04  E-value=0.0039  Score=63.16  Aligned_cols=54  Identities=20%  Similarity=0.145  Sum_probs=43.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC----------------CcccCceeEEecCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGMLGPLSD  205 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------------~~~~~~~~~~~~Plt~  205 (210)
                      +.++||+||+|.+|..+|+.|..-|.+|.+|||++...                ....+|.++..+|-.+
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~   72 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPD   72 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChH
Confidence            46789999999999999999999999999999975321                3345677777777654

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.03  E-value=0.0051  Score=53.36  Aligned_cols=45  Identities=27%  Similarity=0.459  Sum_probs=39.2

Q ss_pred             CCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       142 ~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|.......|++++|.|||.|.+|..+|+.|...|. ++..+|+..
T Consensus        13 ~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         13 GIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            455556678999999999999999999999999998 788899853

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.00  E-value=0.011  Score=45.70  Aligned_cols=41  Identities=24%  Similarity=0.227  Sum_probs=36.5

Q ss_pred             cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..-+|+|++|.|||-|.+|...++.|...|++|..+++...
T Consensus         7 ~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~   47 (157)
T PRK06719          7 LMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEIC   47 (157)
T ss_pred             eEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccC
Confidence            34689999999999999999999999999999999986543

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.99  E-value=0.006  Score=55.46  Aligned_cols=33  Identities=21%  Similarity=0.282  Sum_probs=31.0

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+||+||+|..|+.+|+.+..-|.+|.+|||++
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~   39 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT   39 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCH
Confidence            469999999999999999999999999999974

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.97  E-value=0.0082  Score=51.13  Aligned_cols=33  Identities=18%  Similarity=0.344  Sum_probs=30.5

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|.+|..+|..+...|.+|+.||++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            689999999999999999999999999999754

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.95  E-value=0.011  Score=50.20  Aligned_cols=57  Identities=12%  Similarity=0.053  Sum_probs=46.5

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEc-CCCCC-CCcccCceeEEecCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATK-RSWAS-HSQVSCQSSGMLGPLS  204 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~-~~~~~-~~~~~~~~~~~~~Plt  204 (210)
                      +.++.||+|+||| .|.+|+.+|.+|..-|++|..|+ |+... +...++|.++..++-.
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~  212 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRP  212 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEecCCh
Confidence            3579999999999 99999999999999999999995 66432 3456778777776643

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.94  E-value=0.0085  Score=53.48  Aligned_cols=37  Identities=41%  Similarity=0.636  Sum_probs=34.2

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .+.+++|+|+|.|.+|+.+++.++..|+ +|+.++|++
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~  216 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL  216 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence            4789999999999999999999999998 799999975

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.92  E-value=0.0096  Score=50.03  Aligned_cols=36  Identities=28%  Similarity=0.315  Sum_probs=29.4

Q ss_pred             cccCeEEEEecChHHHHHHHHhcc--CCCEEE-EEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRP--FGVKII-ATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~--fg~~V~-~~~~~~  186 (210)
                      ....+|||||+|.||+.+++.+..  .++++. .+|+.+
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~   42 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDP   42 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCH
Confidence            345799999999999999999885  588877 567653

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.91  E-value=0.011  Score=49.83  Aligned_cols=38  Identities=29%  Similarity=0.420  Sum_probs=35.0

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~  186 (210)
                      ..+.++++.|+|.|.+|++++..|+.+| .+|..++|+.
T Consensus       119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~  157 (278)
T PRK00258        119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV  157 (278)
T ss_pred             CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            4688999999999999999999999999 6899999974

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=95.91  E-value=0.021  Score=51.22  Aligned_cols=37  Identities=30%  Similarity=0.525  Sum_probs=33.9

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      +.+|.|+||.|=|+|++|+..|++|..+|++|++++.
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD  268 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSD  268 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            4679999999999999999999999999999996554

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=95.91  E-value=0.025  Score=46.85  Aligned_cols=35  Identities=43%  Similarity=0.722  Sum_probs=32.7

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEc
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~  183 (210)
                      .++.|+|+.|-|||++|+.+|+.|...|++|++++
T Consensus        28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vs   62 (244)
T PF00208_consen   28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVS   62 (244)
T ss_dssp             HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEE
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence            46999999999999999999999999999999873

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.90  E-value=0.0091  Score=50.44  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|.+|..+|..+..-|.+|+.||++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            689999999999999999999999999999864

>PRK08328 hypothetical protein; Provisional

Probab=95.88  E-value=0.0088  Score=49.04  Aligned_cols=43  Identities=30%  Similarity=0.479  Sum_probs=37.6

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      |.......|.+++|.|+|.|.+|..+|+.|...|. ++..+|..
T Consensus        17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            66555678999999999999999999999999998 58888864

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.87  E-value=0.012  Score=47.39  Aligned_cols=40  Identities=25%  Similarity=0.296  Sum_probs=36.2

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .-+|.|++|.|||.|.+|...++.|...|++|..+++...
T Consensus         5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~   44 (202)
T PRK06718          5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELT   44 (202)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence            3579999999999999999999999999999999998653

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.86  E-value=0.0075  Score=53.73  Aligned_cols=34  Identities=21%  Similarity=0.356  Sum_probs=31.6

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++|+|||+|.+|..+|..|...|.+|++||+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            6899999999999999999999999999998753

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=95.85  E-value=0.0048  Score=45.99  Aligned_cols=35  Identities=29%  Similarity=0.462  Sum_probs=28.3

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEE-cCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRS  185 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~-~~~  185 (210)
                      -...+|||||.|++|+.+++.|+.-|..|.++ +|+
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs   43 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS   43 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            34579999999999999999999999999875 454

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.82  E-value=0.011  Score=50.87  Aligned_cols=34  Identities=32%  Similarity=0.304  Sum_probs=31.2

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+|+|||.|.+|..+|..|..-|.+|..|+|++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3589999999999999999999999999999964

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=95.79  E-value=0.0094  Score=54.31  Aligned_cols=34  Identities=21%  Similarity=0.164  Sum_probs=31.3

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++|||||.|.+|..+|..+..-|.+|+.||+++.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5899999999999999999989999999998753

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.76  E-value=0.01  Score=50.22  Aligned_cols=34  Identities=21%  Similarity=0.354  Sum_probs=31.6

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++|||||.|.+|..+|..+...|.+|+.||+++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            4899999999999999999999999999999764

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.75  E-value=0.0091  Score=50.17  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|.+|..+|..+...|.+|+.||+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            579999999999999999999999999999654

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.75  E-value=0.015  Score=51.80  Aligned_cols=35  Identities=31%  Similarity=0.475  Sum_probs=32.0

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .++|.|||+|.+|..+|+.|+..|.+|.++|++..
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            47899999999999999999999999999998643

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.73  E-value=0.0076  Score=52.31  Aligned_cols=44  Identities=32%  Similarity=0.459  Sum_probs=38.9

Q ss_pred             CCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       142 ~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      .|.......|..++|.|||.|.+|..+|+.|...|. +|..+|..
T Consensus        13 ~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         13 PIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             hcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            465555678999999999999999999999999999 89999985

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.72  E-value=0.011  Score=50.67  Aligned_cols=37  Identities=35%  Similarity=0.603  Sum_probs=32.9

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~~  187 (210)
                      +.+++|+|+|.|.||+.+++.++..| .+|+.++|+..
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~  213 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYE  213 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            78999999999999999999999876 47889999753

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.72  E-value=0.013  Score=47.30  Aligned_cols=40  Identities=23%  Similarity=0.396  Sum_probs=36.7

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      -++.|++|.|||-|.+|..-++.|..+|++|..+++...+
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~   44 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES   44 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH
Confidence            4689999999999999999999999999999999987653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.69  E-value=0.0097  Score=51.44  Aligned_cols=36  Identities=31%  Similarity=0.470  Sum_probs=34.2

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      |++|+|+|+|.+|--..+.++++|++|+++|++.++
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K  202 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEK  202 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence            899999999999999999999999999999998764

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.68  E-value=0.015  Score=48.93  Aligned_cols=35  Identities=23%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCC----CEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg----~~V~~~~~~~  186 (210)
                      ...+|||||+|++|+.+|+.+..-|    .+|++++|+.
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~   40 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN   40 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC
Confidence            3568999999999999999988666    6899999864

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.66  E-value=0.054  Score=42.87  Aligned_cols=39  Identities=33%  Similarity=0.503  Sum_probs=34.8

Q ss_pred             ccccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +..++++++.|+|. |.+|+.+++.+...|.+|..++|+.
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~   62 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL   62 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            45688999999995 9999999999999999999999864

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.66  E-value=0.01  Score=44.75  Aligned_cols=32  Identities=19%  Similarity=0.343  Sum_probs=27.8

Q ss_pred             EEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       156 vGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +-|+|.|++++++++.++.+|++|..+|+++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            46999999999999999999999999998754

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=95.64  E-value=0.013  Score=44.95  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=27.7

Q ss_pred             eEEEEecChHHHHHHHHhc-cCCCEEEEEcCCC
Q 028302          155 TVFILGFGNIGVELAKRLR-PFGVKIIATKRSW  186 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~-~fg~~V~~~~~~~  186 (210)
                      +|||-|||+|||.++|.+. .-+++|.+++...
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~   34 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA   34 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence            7999999999999999987 7788988876543

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.61  E-value=0.018  Score=51.42  Aligned_cols=36  Identities=25%  Similarity=0.386  Sum_probs=33.7

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.|+++.|+|.|.+|..+|+.|+..|++|.++|+..
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            678999999999999999999999999999999754

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=95.53  E-value=0.017  Score=52.35  Aligned_cols=39  Identities=23%  Similarity=0.308  Sum_probs=35.5

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.++.+++++|+|.|.+|++++..+..+|++|..++|+.
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~  365 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTK  365 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            356789999999999999999999999999999999864

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=95.50  E-value=0.019  Score=50.69  Aligned_cols=39  Identities=36%  Similarity=0.605  Sum_probs=35.3

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+.|+||.|=|+|++|+..|+.+...|.+|+++|.+..
T Consensus       203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g  241 (411)
T COG0334         203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG  241 (411)
T ss_pred             CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            459999999999999999999999999999999987543

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.46  E-value=0.017  Score=48.72  Aligned_cols=33  Identities=24%  Similarity=0.257  Sum_probs=30.8

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|.+|..+|..+..-|.+|+.||++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            589999999999999999998899999999864

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.42  E-value=0.011  Score=51.66  Aligned_cols=52  Identities=23%  Similarity=0.325  Sum_probs=42.0

Q ss_pred             HHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       134 ~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      |.+++.-..|.......|++++|.|+|.|.+|..+|+.|...|. ++..+|..
T Consensus         9 Y~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597          9 YRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             hhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            34444434566656678999999999999999999999999999 68888874

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.41  E-value=0.02  Score=51.24  Aligned_cols=37  Identities=41%  Similarity=0.602  Sum_probs=34.6

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|+|.|.+|.++|+.|...|.+|.++|+..
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3679999999999999999999999999999999875

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.41  E-value=0.02  Score=51.47  Aligned_cols=37  Identities=32%  Similarity=0.458  Sum_probs=34.2

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+++|.|+|+|.+|..+|+.|+..|.+|.++|...
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~   42 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNP   42 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence            4778999999999999999999999999999999753

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.40  E-value=0.019  Score=46.06  Aligned_cols=38  Identities=32%  Similarity=0.424  Sum_probs=35.1

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ...|..++|+|+|.|.+|..+|..|...|. ++..+|+.
T Consensus        16 q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        16 VQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            467999999999999999999999999999 69999986

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.40  E-value=0.014  Score=43.48  Aligned_cols=34  Identities=41%  Similarity=0.594  Sum_probs=30.2

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ++++|.|+|+|.+|.++|+.|...|+ ++..+|+.
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            46899999999999999999999999 79999975

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.37  E-value=0.022  Score=51.55  Aligned_cols=35  Identities=26%  Similarity=0.258  Sum_probs=32.9

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      +.|++++|+|+|.-|+.+|+.|+..|++|+.+|..
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~   40 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFC   40 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence            56899999999999999999999999999999954

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=95.33  E-value=0.029  Score=46.68  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=28.5

Q ss_pred             cCeEEEEecChHHHHHHHHhccCC----CEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg----~~V~~~~~~~~  187 (210)
                      ..+|||||+|++|+.+++.+..-+    -+|++++|+..
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~   41 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKK   41 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChh
Confidence            468999999999999999988544    25999988643

>PLN00203 glutamyl-tRNA reductase

Probab=95.32  E-value=0.02  Score=52.47  Aligned_cols=37  Identities=30%  Similarity=0.467  Sum_probs=34.2

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ++.+++|+|||.|.+|+.+++.|...|+ +|+.++|+.
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~  300 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE  300 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            4889999999999999999999999998 699999975

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=95.32  E-value=0.017  Score=55.10  Aligned_cols=33  Identities=36%  Similarity=0.562  Sum_probs=30.1

Q ss_pred             CeEEEEecChHHHHHHHHhccCC--CEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg--~~V~~~~~~~  186 (210)
                      ++|||||+|.+|..+|+.++..|  .+|++||++.
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~   38 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRA   38 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECCh
Confidence            78999999999999999999877  5899999874

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.31  E-value=0.023  Score=51.67  Aligned_cols=37  Identities=24%  Similarity=0.474  Sum_probs=33.7

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++.+++|.|+|+|.+|..+|+.|+..|.+|.++|...
T Consensus         4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            3568899999999999999999999999999999643

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.30  E-value=0.022  Score=51.79  Aligned_cols=35  Identities=26%  Similarity=0.420  Sum_probs=32.8

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      +.|+++.|+|+|.+|...++.|+..|++|+++|+.
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            46899999999999999999999999999999965

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.29  E-value=0.032  Score=47.19  Aligned_cols=55  Identities=13%  Similarity=0.038  Sum_probs=45.7

Q ss_pred             ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecC
Q 028302          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGP  202 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~P  202 (210)
                      +.++.||++.|+|.|. .|+.+|..|...|++|..+++..+.  +....+|.+++..+
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG  211 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVG  211 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccC
Confidence            5689999999999998 9999999999999999999885432  24567888877763

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.25  E-value=0.023  Score=51.38  Aligned_cols=38  Identities=21%  Similarity=0.326  Sum_probs=35.2

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++.+++|.|+|+|..|+.+|+.|+..|.+|.++|+..
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            56889999999999999999999999999999999753

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.25  E-value=0.013  Score=51.47  Aligned_cols=54  Identities=20%  Similarity=0.356  Sum_probs=44.5

Q ss_pred             HHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          132 NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       132 ~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      .+|.+++.-..|.......|.+++|.|+|+|.+|..+|+.|...|+ ++..+|..
T Consensus        20 ~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         20 RRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             HHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3455555545577666788999999999999999999999999998 79999875

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.21  E-value=0.052  Score=44.36  Aligned_cols=39  Identities=26%  Similarity=0.413  Sum_probs=35.4

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCE---EEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVK---IIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~---V~~~~~~~  186 (210)
                      +..+.++++.|+|.|..|+.+|+.+...|++   |..+||+.
T Consensus        20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            4578999999999999999999999999985   99999983

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.17  E-value=0.028  Score=50.49  Aligned_cols=39  Identities=28%  Similarity=0.506  Sum_probs=35.0

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ...+++|.|+|+|.-|+.+|+.|+..|++|.++|.++.+
T Consensus         4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           4 DFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             cccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            345999999999999999999999999999999976554

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.16  E-value=0.033  Score=37.54  Aligned_cols=34  Identities=35%  Similarity=0.494  Sum_probs=31.1

Q ss_pred             eEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ++.|||-|.+|-++|..++.+|.+|..+.+....
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            5889999999999999999999999999987653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=95.16  E-value=0.028  Score=46.55  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=31.8

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      --++-|+|-|++++.+|++++.+|++|+.+|+++.
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            35899999999999999999999999999997643

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.15  E-value=0.027  Score=47.61  Aligned_cols=56  Identities=14%  Similarity=0.068  Sum_probs=45.2

Q ss_pred             ccccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecCC
Q 028302          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGPL  203 (210)
Q Consensus       148 ~~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~Pl  203 (210)
                      +.++.||+++|||. |-+|+.+|.+|..-|++|..|....+.  +...++|.++..++-
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~  211 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGR  211 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEecCc
Confidence            56899999999999 999999999999999999999543331  245777777777653

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=94.99  E-value=0.027  Score=47.92  Aligned_cols=37  Identities=30%  Similarity=0.609  Sum_probs=32.7

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -+.||.+.|.|||.+|+-.|+.||+||++|+...-.|
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDP  247 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDP  247 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCc
Confidence            3569999999999999999999999999999875443

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.98  E-value=0.028  Score=48.05  Aligned_cols=34  Identities=26%  Similarity=0.194  Sum_probs=31.1

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+|+|||.|.||..+|.+|...|.+|..+.|..
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3689999999999999999999999999998865

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.93  E-value=0.029  Score=51.33  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=31.5

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++|||||.|.+|..+|..+..-|.+|+.||+++.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6799999999999999999988999999998753

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.92  E-value=0.029  Score=51.31  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=31.5

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      =++|||||.|.+|..+|..+..-|.+|..||+++
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~   38 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA   38 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3679999999999999999999999999999874

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.85  E-value=0.032  Score=43.28  Aligned_cols=39  Identities=15%  Similarity=0.257  Sum_probs=32.8

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+...+|.|+|.|+.|+..++.|+++|++|..+|.+.
T Consensus        15 ~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   15 PGGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             TTEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            356778999999999999999999999999999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=94.83  E-value=0.039  Score=46.70  Aligned_cols=37  Identities=24%  Similarity=0.273  Sum_probs=33.9

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .+.++++.|+|.|..|++++..|...|+ +|..+||+.
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            4678999999999999999999999998 799999974

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=94.77  E-value=0.044  Score=45.84  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=33.6

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+++++|+|.|.+|+.++..+...|++|..++|+.
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~  150 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTV  150 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3568899999999999999999999999999999874

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.76  E-value=0.042  Score=49.18  Aligned_cols=37  Identities=22%  Similarity=0.456  Sum_probs=33.9

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +.++++.|+|.|.+|..+|+.|+..|.+|.++|....
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            5689999999999999999999999999999997544

>PRK07411 hypothetical protein; Validated

Probab=94.75  E-value=0.02  Score=50.60  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=37.8

Q ss_pred             CCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       142 ~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      .|.......|+..+|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus        27 ~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D   71 (390)
T PRK07411         27 EVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD   71 (390)
T ss_pred             hcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            455445678999999999999999999999999998 68888874

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.74  E-value=0.013  Score=48.34  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=34.6

Q ss_pred             cccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ....|++++|.|+|.|.+|..+|+.|...|. ++..+|+.
T Consensus        18 ~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        18 GQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3467999999999999999999999998888 68888874

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK04148 hypothetical protein; Provisional

Probab=94.71  E-value=0.036  Score=41.64  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=32.0

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +++++.+||+| -|..+|..|+..|.+|++.|.++.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            56889999999 999999999999999999998764

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=94.65  E-value=0.046  Score=47.08  Aligned_cols=34  Identities=21%  Similarity=0.428  Sum_probs=29.0

Q ss_pred             cCeEEEEecChHHHHHHHHhccC-CCEEEE-EcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~f-g~~V~~-~~~~~  186 (210)
                      ..+|||||+|+||+.+++.+... ++++.+ +|++.
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~   38 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG   38 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence            46899999999999999999866 899886 57764

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.63  E-value=0.055  Score=48.78  Aligned_cols=33  Identities=15%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .|++|+|+|+|.-|+++|+.|+. |++|+.+|..
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~   37 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL   37 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence            47899999999999999999996 9999999954

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.63  E-value=0.033  Score=49.85  Aligned_cols=32  Identities=19%  Similarity=0.383  Sum_probs=29.5

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+|||||+|.+|..+|..+.. |.+|++||+..
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~   38 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNK   38 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCH
Confidence            689999999999999999887 79999999865

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.55  E-value=0.023  Score=45.43  Aligned_cols=43  Identities=30%  Similarity=0.471  Sum_probs=37.4

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS  185 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~  185 (210)
                      |.......|++++|.|+|+|.+|.++|+-|...|+. +..+|..
T Consensus         9 ~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485           9 WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            665556789999999999999999999999999995 8888864

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.53  E-value=0.051  Score=48.94  Aligned_cols=38  Identities=26%  Similarity=0.364  Sum_probs=33.9

Q ss_pred             ccccCeEEEEecChHHHH-HHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~-vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+++++.|+|+|..|.. +|+.|+..|.+|.++|....
T Consensus         4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            356789999999999999 79999999999999997543

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=94.52  E-value=0.051  Score=47.10  Aligned_cols=39  Identities=18%  Similarity=0.292  Sum_probs=35.1

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      ..+.++++.|||.|.+|+.+|+.|..-|. +|+..+|+..
T Consensus       170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~  209 (338)
T PRK00676        170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL  209 (338)
T ss_pred             CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            46899999999999999999999999996 6999999843

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.47  E-value=0.032  Score=49.01  Aligned_cols=44  Identities=25%  Similarity=0.380  Sum_probs=38.0

Q ss_pred             CCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       142 ~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      .|.......|.+++|.|+|.|.+|..+|+.|...|+ ++..+|+.
T Consensus       124 ~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        124 EVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            455444567999999999999999999999999999 69999875

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.44  E-value=0.056  Score=48.41  Aligned_cols=35  Identities=14%  Similarity=0.282  Sum_probs=32.0

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++-+++|+|+|.+|..+|+.|+..|.+|.++|...
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            45689999999999999999999999999999754

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.39  E-value=0.055  Score=48.89  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=34.6

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.++++.|+|.|.+|.++|+.|+..|.+|.++|+..
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            45789999999999999999999999999999999654

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=94.23  E-value=0.077  Score=49.33  Aligned_cols=40  Identities=20%  Similarity=0.214  Sum_probs=36.5

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ...+..|||||||-|..|+.+++.++.+|++|+.+|+.+.
T Consensus        17 ~~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~   56 (577)
T PLN02948         17 VHGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED   56 (577)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3558899999999999999999999999999999998764

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.16  E-value=0.031  Score=49.49  Aligned_cols=44  Identities=23%  Similarity=0.333  Sum_probs=37.4

Q ss_pred             CCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       142 ~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      .|.......|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        31 ~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         31 DVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             hcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            355445678999999999999999999999998888 68888864

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.15  E-value=0.062  Score=40.34  Aligned_cols=31  Identities=35%  Similarity=0.572  Sum_probs=28.6

Q ss_pred             eEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      +|.|+|+|.+|.++|+.|...|. ++..+|+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999999 69999875

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.12  E-value=0.08  Score=44.81  Aligned_cols=54  Identities=17%  Similarity=0.189  Sum_probs=45.3

Q ss_pred             ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEec
Q 028302          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLG  201 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~  201 (210)
                      +.++.||++.|||.|. +|+.+|.+|...|++|..++.+.+.  +...++|.++...
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~av  210 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAV  210 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcC
Confidence            4589999999999999 9999999999999999998875432  3567778777765

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.11  E-value=0.059  Score=45.65  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=34.0

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~  186 (210)
                      .+.++++.|+|.|.+|++++..|...|++ |..++|+.
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            47889999999999999999999999996 99999874

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=94.08  E-value=0.057  Score=46.72  Aligned_cols=35  Identities=37%  Similarity=0.470  Sum_probs=32.0

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .-++|||||||+.||-.|+.+-.-|-.|+..||+.
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd   85 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD   85 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCceeEecCcch
Confidence            34689999999999999999999999999999964

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.05  E-value=0.083  Score=47.16  Aligned_cols=36  Identities=25%  Similarity=0.321  Sum_probs=33.1

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.++++.|+|+|..|...++.|+..|.+|.++|...
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~   39 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI   39 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            568899999999999999999999999999999643

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.03  E-value=0.061  Score=40.50  Aligned_cols=31  Identities=35%  Similarity=0.488  Sum_probs=29.2

Q ss_pred             EEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       156 vGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |.|+|.|.||..+|-+|+.-|.+|..++|+.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999999876

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.96  E-value=0.066  Score=41.06  Aligned_cols=32  Identities=28%  Similarity=0.346  Sum_probs=30.3

Q ss_pred             eEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +|+|+|.|+.|.++|..+..-|-+|..|+|..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            68999999999999999999999999999974

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=93.92  E-value=0.077  Score=47.32  Aligned_cols=38  Identities=24%  Similarity=0.468  Sum_probs=34.5

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ..+.|+++.|||.|.+|+.+++.|...|+ +|..++|+.
T Consensus       177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~  215 (414)
T PRK13940        177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTI  215 (414)
T ss_pred             cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            46889999999999999999999999996 699999974

>PRK06197 short chain dehydrogenase; Provisional

Probab=93.92  E-value=0.069  Score=45.06  Aligned_cols=47  Identities=19%  Similarity=0.249  Sum_probs=39.4

Q ss_pred             hCCCCCCcccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          140 QKKLGVPTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       140 ~~~w~~~~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.|......++.||++.|.| .|.||+++|+.+...|++|+..+|+.
T Consensus         3 ~~~~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~   50 (306)
T PRK06197          3 MTKWTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNL   50 (306)
T ss_pred             CCCCCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            355655445789999999999 69999999999999999999988863

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=93.77  E-value=0.095  Score=45.00  Aligned_cols=36  Identities=19%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC--EEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~--~V~~~~~~~  186 (210)
                      -.+++|+|||.|+||..+|-.+...|.  ++..+|...
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            356899999999999999999987777  899999854

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=93.75  E-value=0.06  Score=43.57  Aligned_cols=43  Identities=26%  Similarity=0.184  Sum_probs=36.8

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS  185 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~  185 (210)
                      |.......|+.++|.|+|.|.+|..+|+.|...|.. +..+|..
T Consensus        18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            443455779999999999999999999999988984 8888875

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.68  E-value=0.079  Score=45.38  Aligned_cols=38  Identities=26%  Similarity=0.442  Sum_probs=34.0

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      --.|.|+.|.|+|.+|-+++.-+|+.|+ +|+++|-.++
T Consensus       190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~  228 (375)
T KOG0022|consen  190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPD  228 (375)
T ss_pred             cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHH
Confidence            3458999999999999999999999999 7999997653

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.63  E-value=0.098  Score=42.27  Aligned_cols=36  Identities=25%  Similarity=0.283  Sum_probs=33.4

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.++++.|.|- |.||+.+|+.+...|.+|+..+|+.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~   39 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ   39 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            67999999997 9999999999999999999999864

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.61  E-value=0.089  Score=37.71  Aligned_cols=31  Identities=35%  Similarity=0.716  Sum_probs=27.1

Q ss_pred             EEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       156 vGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +-|+|+|.+|+.+++.|+..+.+|..+|+.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            5799999999999999999777999999875

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=93.57  E-value=0.11  Score=39.82  Aligned_cols=30  Identities=30%  Similarity=0.427  Sum_probs=25.2

Q ss_pred             eEEEEecChHHHHHHHHhc-cCCCEEEEEcC
Q 028302          155 TVFILGFGNIGVELAKRLR-PFGVKIIATKR  184 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~-~fg~~V~~~~~  184 (210)
                      +|||+|+|+||+.+++.+. .-++++.+...
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d   32 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAIND   32 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeec
Confidence            7999999999999999987 56888777543

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=93.53  E-value=0.099  Score=44.13  Aligned_cols=37  Identities=24%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .+.++++.|||.|..|++++..|...|+ +|..++|+.
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~  159 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP  159 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            4779999999999999999999999998 699999974

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06153 hypothetical protein; Provisional

Probab=93.50  E-value=0.076  Score=46.76  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=33.8

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ..|++++|+|||+|.+|..++..|...|. +++.+|.-
T Consensus       172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            57899999999999999999999999998 78898864

>PRK14982 acyl-ACP reductase; Provisional

Probab=93.47  E-value=0.12  Score=44.88  Aligned_cols=39  Identities=31%  Similarity=0.490  Sum_probs=33.7

Q ss_pred             ccccccCeEEEEec-ChHHHHHHHHhc-cCCC-EEEEEcCCC
Q 028302          148 GETLLGKTVFILGF-GNIGVELAKRLR-PFGV-KIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~-G~IG~~vA~~~~-~fg~-~V~~~~~~~  186 (210)
                      +.++++++|.|+|. |.||+.+++.+. ..|. +++.++|+.
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~  191 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQ  191 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCH
Confidence            45799999999998 899999999996 5674 899999864

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]

Probab=93.44  E-value=0.1  Score=44.60  Aligned_cols=38  Identities=32%  Similarity=0.505  Sum_probs=34.3

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~  189 (210)
                      ..++|.++|-|..|+++|=-+..+|.+|+++||+....
T Consensus        11 ~a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~AP   48 (394)
T COG0027          11 QATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAP   48 (394)
T ss_pred             CCeEEEEecCCccchHHHHHHHhcCCEEEEecCcCCCh
Confidence            45679999999999999999999999999999987643

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.39  E-value=0.11  Score=44.11  Aligned_cols=53  Identities=17%  Similarity=0.188  Sum_probs=43.2

Q ss_pred             ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEe
Q 028302          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGML  200 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~  200 (210)
                      +.++.||++.|||.|+ +|+.+|.+|...|++|..++...+.  +...++|.++..
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~A  214 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVA  214 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEEc
Confidence            4689999999999999 9999999999999999998854432  245667766654

>PRK12828 short chain dehydrogenase; Provisional

Probab=93.36  E-value=0.099  Score=41.81  Aligned_cols=38  Identities=37%  Similarity=0.508  Sum_probs=33.8

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.++|+.|.| .|.||+.+++.+..-|.+|+..+|+..
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~   42 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA   42 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence            36799999999 699999999999988999999998653

>PRK08703 short chain dehydrogenase; Provisional

Probab=93.34  E-value=0.12  Score=41.79  Aligned_cols=38  Identities=29%  Similarity=0.420  Sum_probs=34.4

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.++++.|.| .|.||+.+|+.+...|++|+.++|+.
T Consensus         2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~   40 (239)
T PRK08703          2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ   40 (239)
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            357899999999 69999999999999999999999876

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.30  E-value=0.067  Score=47.11  Aligned_cols=33  Identities=27%  Similarity=0.500  Sum_probs=31.3

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .||||+|+|-||-.+|..+..-|++|++||-..
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~   42 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQ   42 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCH
Confidence            899999999999999999999999999999754

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=93.26  E-value=0.12  Score=42.11  Aligned_cols=37  Identities=30%  Similarity=0.445  Sum_probs=33.8

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~   44 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP   44 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            47899999999 59999999999999999999998864

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=93.25  E-value=0.13  Score=48.16  Aligned_cols=60  Identities=28%  Similarity=0.371  Sum_probs=45.4

Q ss_pred             chhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC---cccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       113 a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ....||.++-+=|-+.             +|..-   ....|++.+|.|+|.|.+|..+|+.|.+.|+ ++..+|..
T Consensus       308 P~~la~~avdlnlkLm-------------kWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       308 PKRLAERSVDLNLKLM-------------KWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             HHHHHHHHHHHHHHHH-------------hhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            3556666666555554             34421   2367999999999999999999999999999 58888863

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=93.22  E-value=0.2  Score=46.40  Aligned_cols=46  Identities=24%  Similarity=0.289  Sum_probs=37.9

Q ss_pred             CCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       141 ~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..|..+......|++|.|||.|.+|-..|..|+..|.+|+.+++..
T Consensus       125 ~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~  170 (564)
T PRK12771        125 NGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP  170 (564)
T ss_pred             cCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3455433335679999999999999999999999999999999754

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=93.11  E-value=0.11  Score=43.32  Aligned_cols=51  Identities=24%  Similarity=0.293  Sum_probs=42.2

Q ss_pred             HHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       133 ~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      +|+++++-  |.......|...+|.|+|.|.+|.++|+-+..-|. ++..+|..
T Consensus         8 RYsRQIrL--wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD   59 (287)
T PTZ00245          8 RYDRQIRL--WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEG   59 (287)
T ss_pred             HHhHHHHH--hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCC
Confidence            45555444  87766788999999999999999999999999998 58888764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.10  E-value=0.11  Score=46.39  Aligned_cols=38  Identities=37%  Similarity=0.336  Sum_probs=34.0

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+..+++.|+|+|.+|+.+++.|...|.+|+.+|+.+.
T Consensus       228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~  265 (453)
T PRK09496        228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE  265 (453)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            35579999999999999999999999999999987653

>PRK06841 short chain dehydrogenase; Provisional

Probab=93.01  E-value=0.12  Score=41.98  Aligned_cols=38  Identities=26%  Similarity=0.370  Sum_probs=34.3

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.++++.|.| .|.||+++|+.+...|++|+..+|+..
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~   50 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED   50 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            47899999999 599999999999999999999998653

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=92.97  E-value=0.47  Score=39.50  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=31.6

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~  186 (210)
                      .|.+|.|+|.|.||...++.++.+|++ |++.+++.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~  155 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP  155 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            689999999999999999999999997 88887654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=92.92  E-value=0.19  Score=38.98  Aligned_cols=54  Identities=22%  Similarity=0.188  Sum_probs=39.0

Q ss_pred             ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEec
Q 028302          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLG  201 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~  201 (210)
                      +.++.||++.|||-+. +|+.++.+|..-|+.|...+.+.+.  +...++|.++...
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~   87 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAV   87 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-S
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeee
Confidence            4579999999999885 9999999999999999998875432  3556777777664

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.89  E-value=0.15  Score=40.99  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=33.8

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++.++++.|.|- |.||+.+++.+..-|++|+..+|+..
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~   40 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN   40 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367899999995 78999999999999999999998654

>PRK06523 short chain dehydrogenase; Provisional

Probab=92.83  E-value=0.15  Score=41.60  Aligned_cols=39  Identities=31%  Similarity=0.461  Sum_probs=34.8

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+.|+++.|.| .|.||+++|+.+...|++|+..+|+..
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~   44 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP   44 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence            458899999999 589999999999999999999998643

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=92.80  E-value=0.15  Score=46.98  Aligned_cols=37  Identities=27%  Similarity=0.545  Sum_probs=34.3

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|+|.|.+|++++..|...|++|..++|+.
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~  412 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY  412 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            5778999999999999999999999999999999864

>PRK06398 aldose dehydrogenase; Validated

Probab=92.73  E-value=0.17  Score=41.61  Aligned_cols=38  Identities=24%  Similarity=0.300  Sum_probs=34.2

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +++||++.|.| .|.||+++|+.+..-|++|+..+|+..
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~   41 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP   41 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            57899999999 679999999999999999999998653

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.66  E-value=0.15  Score=41.22  Aligned_cols=38  Identities=29%  Similarity=0.497  Sum_probs=34.1

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.++++.|.| .|.||+++++.+...|.+|+.++|+..
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36789999999 599999999999999999999999763

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=92.66  E-value=0.17  Score=45.07  Aligned_cols=39  Identities=36%  Similarity=0.546  Sum_probs=34.7

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      .+|.++++.|||.|.+|+-+|+.|..-|. +|+..+|+..
T Consensus       174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~e  213 (414)
T COG0373         174 GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLE  213 (414)
T ss_pred             cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHH
Confidence            45999999999999999999999999995 6888888753

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=92.62  E-value=0.19  Score=37.97  Aligned_cols=33  Identities=30%  Similarity=0.351  Sum_probs=29.0

Q ss_pred             CeEEEEec-ChHHHHHHHHhc--cCCCEEEEEcCCC
Q 028302          154 KTVFILGF-GNIGVELAKRLR--PFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~-G~IG~~vA~~~~--~fg~~V~~~~~~~  186 (210)
                      .+|+|||. |++|+.+|-.+.  ++.-++..+|+..
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            37999999 999999999877  7777999999873

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=92.57  E-value=0.15  Score=41.96  Aligned_cols=38  Identities=29%  Similarity=0.350  Sum_probs=33.7

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ...|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus         6 ~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755           6 LEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             HHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            356889999999999999999999998888 78888864

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PTZ00117 malate dehydrogenase; Provisional

Probab=92.57  E-value=0.18  Score=43.40  Aligned_cols=36  Identities=17%  Similarity=0.183  Sum_probs=31.4

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~  186 (210)
                      +..++|+|||.|++|..+|-.+...| .+|..+|...
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            45679999999999999999988667 7999999864

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=92.54  E-value=0.18  Score=40.80  Aligned_cols=37  Identities=30%  Similarity=0.426  Sum_probs=33.5

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.|. |.||+.+|+.+..-|++|+..+|+.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~   39 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE   39 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence            378999999995 8999999999999999999999864

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.53  E-value=0.16  Score=41.47  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=26.7

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCC---CE-EEEEcCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFG---VK-IIATKRS  185 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg---~~-V~~~~~~  185 (210)
                      .+.+|||||.|++|+.+++.+..-+   .+ |+.++++
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~   40 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS   40 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence            3578999999999999999876443   44 7778764

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=92.49  E-value=0.37  Score=40.70  Aligned_cols=55  Identities=25%  Similarity=0.400  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccC----CC-------EEEEEcC
Q 028302          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  184 (210)
Q Consensus       116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~f----g~-------~V~~~~~  184 (210)
                      +|=-+++.+|+.+|-.                +..|.+.+|.|+|.|.-|-.+|+.+...    |+       +++.+|+
T Consensus         4 Ta~V~lAgllnAlk~~----------------g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~   67 (279)
T cd05312           4 TAAVALAGLLAALRIT----------------GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDS   67 (279)
T ss_pred             HHHHHHHHHHHHHHHh----------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcC
Confidence            4556777888888743                6789999999999999999999999877    87       8999998


Q ss_pred             CC
Q 028302          185 SW  186 (210)
Q Consensus       185 ~~  186 (210)
                      .+
T Consensus        68 ~G   69 (279)
T cd05312          68 KG   69 (279)
T ss_pred             CC
Confidence            74

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=92.43  E-value=0.28  Score=38.46  Aligned_cols=39  Identities=33%  Similarity=0.416  Sum_probs=32.8

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .++.|++|.|||-|+.|-.+|..|...|-+|..+.|++.
T Consensus       163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  163 EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            578899999999999999999999999999999988753

...

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=92.38  E-value=0.39  Score=36.35  Aligned_cols=57  Identities=21%  Similarity=0.246  Sum_probs=45.9

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGPLS  204 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~Plt  204 (210)
                      +.++.||++.|+| -..+|+.+|.+|..-|++|...+++.+.  +...++|.++...+..
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~   82 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKP   82 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCC
Confidence            5689999999999 5668999999999999999999865432  3567788887775543

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK06057 short chain dehydrogenase; Provisional

Probab=92.34  E-value=0.19  Score=41.05  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=34.1

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.|+++.|+|- |.||+.+++.+...|++|+.++|+..
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~   42 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPE   42 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999996 99999999999999999999988643

>PRK08223 hypothetical protein; Validated

Probab=92.28  E-value=0.15  Score=43.20  Aligned_cols=39  Identities=23%  Similarity=0.307  Sum_probs=34.8

Q ss_pred             cccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ....|++++|.|+|+|.+|..+|..|...|. ++..+|..
T Consensus        21 ~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         21 EQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            4578999999999999999999999999998 68888864

>PRK06949 short chain dehydrogenase; Provisional

Probab=92.26  E-value=0.23  Score=40.35  Aligned_cols=38  Identities=26%  Similarity=0.435  Sum_probs=34.3

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.++++.|.| .|.||+.+++.+...|++|+..+|+.
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~   43 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRV   43 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            457899999999 59999999999999999999998864

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=92.25  E-value=0.1  Score=43.83  Aligned_cols=43  Identities=19%  Similarity=0.307  Sum_probs=37.1

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      |.......|++++|.|+|.|.+|..+|+.|...|. ++..+|..
T Consensus        20 ~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         20 YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            66555678999999999999999999999998884 78888864

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=92.25  E-value=0.14  Score=46.22  Aligned_cols=35  Identities=31%  Similarity=0.491  Sum_probs=32.0

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -+++.|||-|-||-++|..++.||++|..+.+...
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~  207 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDR  207 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            47899999999999999999999999999987653

>PLN02780 ketoreductase/ oxidoreductase

Probab=92.15  E-value=0.57  Score=40.10  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=32.5

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..|+++.|.| .|.||+++|+.+..-|++|+.++|+.
T Consensus        51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~   87 (320)
T PLN02780         51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNP   87 (320)
T ss_pred             ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3689999999 57899999999999999999999875

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=92.10  E-value=0.21  Score=40.28  Aligned_cols=38  Identities=26%  Similarity=0.385  Sum_probs=34.1

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.+.++++.|.| .|.||+.+++.+..-|.+|+..+|+.
T Consensus         2 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~   40 (251)
T PRK12826          2 RDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG   40 (251)
T ss_pred             CCCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            346789999999 89999999999999999999999874

>PRK08264 short chain dehydrogenase; Validated

Probab=92.10  E-value=0.18  Score=40.49  Aligned_cols=38  Identities=29%  Similarity=0.422  Sum_probs=34.0

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      ++.++++.|.| .|.||+++|+.|..-|. +|+.++|+.+
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~   42 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE   42 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh
Confidence            46789999999 69999999999999999 9999998654

>PRK05717 oxidoreductase; Validated

Probab=92.02  E-value=0.23  Score=40.52  Aligned_cols=38  Identities=18%  Similarity=0.278  Sum_probs=34.3

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.+..-|++|+..+++.
T Consensus         6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~   44 (255)
T PRK05717          6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR   44 (255)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence            568899999999 69999999999999999999998764

>cd08230 glucose_DH Glucose dehydrogenase

Probab=91.99  E-value=0.19  Score=43.36  Aligned_cols=35  Identities=29%  Similarity=0.387  Sum_probs=32.3

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ..|.+|.|+|.|.||...++.+|..|++|++++++
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~  205 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR  205 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            35889999999999999999999999999999874

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK07576 short chain dehydrogenase; Provisional

Probab=91.92  E-value=0.23  Score=40.92  Aligned_cols=38  Identities=24%  Similarity=0.372  Sum_probs=34.3

Q ss_pred             cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++.++++.|.|- |.||+.+++.+...|++|+..+|+.
T Consensus         5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~   43 (264)
T PRK07576          5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ   43 (264)
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3578999999996 8999999999999999999999864

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=91.88  E-value=0.24  Score=40.41  Aligned_cols=37  Identities=24%  Similarity=0.298  Sum_probs=33.1

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++.||++.|.| .|.||+++|+.+...|++|++.++..
T Consensus         7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~   44 (253)
T PRK08993          7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE   44 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc
Confidence            58899999999 66899999999999999999988754

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.88  E-value=0.19  Score=42.43  Aligned_cols=55  Identities=11%  Similarity=0.084  Sum_probs=45.8

Q ss_pred             ccccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCCC--CCCcccCceeEEecC
Q 028302          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA--SHSQVSCQSSGMLGP  202 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~~--~~~~~~~~~~~~~~P  202 (210)
                      +.++.|+++.|+|.+ ..|+.+|.++..+|++|..+.++.+  ++...++|.++...|
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avg  204 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAG  204 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCC
Confidence            468999999999999 9999999999999999988876543  235677888887765

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=91.86  E-value=0.25  Score=42.59  Aligned_cols=37  Identities=16%  Similarity=0.162  Sum_probs=31.2

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~~  187 (210)
                      +..++|+|||.|++|..+|-.+..-| ++|..+|....
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            44579999999999999999987666 48999998654

>PRK07890 short chain dehydrogenase; Provisional

Probab=91.79  E-value=0.21  Score=40.62  Aligned_cols=36  Identities=31%  Similarity=0.400  Sum_probs=33.1

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.++++.|.| .|.||+.+|+.+..-|++|+..+|+.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~   39 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA   39 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence            6789999999 68999999999999999999999865

>PRK08265 short chain dehydrogenase; Provisional

Probab=91.77  E-value=0.25  Score=40.56  Aligned_cols=38  Identities=24%  Similarity=0.328  Sum_probs=34.3

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .++++++.|.| .|.||+++|+.+...|++|+..+|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            47899999999 599999999999999999999998753

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=91.76  E-value=0.86  Score=38.93  Aligned_cols=94  Identities=14%  Similarity=0.168  Sum_probs=62.3

Q ss_pred             HHHHhcC-CCceEEEEccccCCccchhHHhhCCc-EEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC
Q 028302           68 SNCISRA-NQMKLIMQFGVGLEGVDINAATRCGI-KVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV  145 (210)
Q Consensus        68 ~~~l~~~-p~Lk~i~~~~aG~d~id~~~~~~~gi-~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~  145 (210)
                      ...++.+ ++.-+|-....|+-++-.+   ..++ +|.|+.+-+..|  ++  .++.=++...+.+              
T Consensus        95 ~~tl~ayg~D~iViRH~~egaa~~~a~---~~~~~pvINaGDG~~qH--PT--Q~LLDl~TI~~~~--------------  153 (316)
T COG0540          95 IRTLSAYGVDAIVIRHPEEGAARLLAE---FSGVNPVINAGDGSHQH--PT--QALLDLYTIREEF--------------  153 (316)
T ss_pred             HHHHHhhCCCEEEEeCccccHHHHHHH---hcCCCceEECCCCCCCC--cc--HHHHHHHHHHHHh--------------
Confidence            3345555 5555566666666554332   2356 799988764323  22  2333333333322              


Q ss_pred             CcccccccCeEEEEe---cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          146 PTGETLLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       146 ~~~~~l~~~tvGIiG---~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                        + .+.|++|+|+|   +|+..+..++.|+.||++|..+.|.
T Consensus       154 --G-~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~  193 (316)
T COG0540         154 --G-RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPE  193 (316)
T ss_pred             --C-CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECch
Confidence              2 39999999999   9999999999999999999999984

>PRK06172 short chain dehydrogenase; Provisional

Probab=91.73  E-value=0.25  Score=40.17  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=34.1

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.+|++.|.| .|.||+++|+.+..-|++|+..+|+.+
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~   42 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA   42 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            47799999999 589999999999999999999998753

>PRK08862 short chain dehydrogenase; Provisional

Probab=91.69  E-value=0.25  Score=40.03  Aligned_cols=38  Identities=13%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             ccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +++||++.|.|.++ ||+++|+.+...|++|+..+|+..
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS   40 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            47899999999655 999999999999999999988654

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=91.66  E-value=0.19  Score=43.09  Aligned_cols=35  Identities=31%  Similarity=0.571  Sum_probs=31.7

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++.
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~  204 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP  204 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence            58999999999999999999999999 688888764

>PRK07060 short chain dehydrogenase; Provisional

Probab=91.65  E-value=0.26  Score=39.66  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=33.8

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.|. |.||+.+++.+..-|.+|+.++|+.
T Consensus         6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~   43 (245)
T PRK07060          6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNA   43 (245)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478899999997 8999999999999999999999865

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=91.65  E-value=0.26  Score=40.46  Aligned_cols=36  Identities=22%  Similarity=0.429  Sum_probs=32.6

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.+|++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   39 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA   39 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6789999999 57899999999999999999998864

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.64  E-value=0.26  Score=39.47  Aligned_cols=38  Identities=24%  Similarity=0.389  Sum_probs=33.8

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++.+|++.|.| .|.||+.+++.+..-|++|+..+|+..
T Consensus         2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~   40 (235)
T PRK06550          2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDK   40 (235)
T ss_pred             CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            47889999999 689999999999999999999988653

>PRK09186 flagellin modification protein A; Provisional

Probab=91.64  E-value=0.21  Score=40.55  Aligned_cols=37  Identities=38%  Similarity=0.429  Sum_probs=33.1

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +.+|++.|.| .|.||+.+|+.|..-|++|+..+|+..
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~   39 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKE   39 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChH
Confidence            5789999999 589999999999999999999988643

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=91.63  E-value=0.25  Score=40.47  Aligned_cols=39  Identities=31%  Similarity=0.438  Sum_probs=33.8

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.+++|.|+| .|.||+.+++.|..-|.+|+++.|+.
T Consensus        12 ~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~   51 (251)
T PLN00141         12 AENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV   51 (251)
T ss_pred             cccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence            3567789999999 69999999999998899999887754

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=91.60  E-value=0.22  Score=42.22  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=29.3

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS  185 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~  185 (210)
                      .++++.|+|.|.||...++.++.+|++ |+++|+.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~  178 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN  178 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence            478899999999999999999999998 5556654

>PRK08339 short chain dehydrogenase; Provisional

Probab=91.58  E-value=0.26  Score=40.64  Aligned_cols=37  Identities=30%  Similarity=0.369  Sum_probs=33.2

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.|- |.||+++|+.+...|++|+..+|+.
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~   42 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNE   42 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999995 6899999999999999999999864

>PRK07831 short chain dehydrogenase; Provisional

Probab=91.54  E-value=0.25  Score=40.45  Aligned_cols=38  Identities=26%  Similarity=0.379  Sum_probs=33.3

Q ss_pred             cccccCeEEEEec-C-hHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-G-NIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G-~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.++++.|.|- | .||+++++.+...|++|+..++..
T Consensus        13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~   52 (262)
T PRK07831         13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE   52 (262)
T ss_pred             cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence            4567899999996 6 699999999999999999988754

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=91.53  E-value=0.22  Score=42.89  Aligned_cols=35  Identities=20%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|.+|.|+|.|.+|...++.++.+|.+|++.+++.
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~  200 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP  200 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            48999999999999999999999999999988754

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=91.49  E-value=0.25  Score=40.07  Aligned_cols=38  Identities=24%  Similarity=0.317  Sum_probs=34.5

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.++++.|.| .|.||..+++.|...|++|+.++|+.
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~   46 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTE   46 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCH
Confidence            467899999998 78899999999999999999999875

>PRK08628 short chain dehydrogenase; Provisional

Probab=91.48  E-value=0.24  Score=40.33  Aligned_cols=39  Identities=28%  Similarity=0.301  Sum_probs=34.5

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -.+.|+++.|.| .|.||+.+|+.+...|++|+..+|+..
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~   42 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP   42 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence            358899999999 689999999999999999999987654

>PRK07806 short chain dehydrogenase; Provisional

Probab=91.44  E-value=0.28  Score=39.69  Aligned_cols=37  Identities=32%  Similarity=0.445  Sum_probs=32.8

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.|- |.||+.+++.+..-|.+|+..+|+.
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            367899999995 9999999999999999999988754

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=91.44  E-value=0.32  Score=39.35  Aligned_cols=40  Identities=23%  Similarity=0.340  Sum_probs=37.1

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .-+|.|++|.|||-|.+|..=|+.+...|++|+.+++...
T Consensus         7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~   46 (210)
T COG1648           7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFE   46 (210)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCcc
Confidence            4579999999999999999999999999999999999773

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=91.42  E-value=0.27  Score=40.12  Aligned_cols=42  Identities=14%  Similarity=0.132  Sum_probs=36.7

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~  189 (210)
                      .-.++|++|.|||-|.++.+=++.|..+|++|..+++...++
T Consensus        20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~e   61 (223)
T PRK05562         20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKE   61 (223)
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHH
Confidence            356779999999999999998999999999999999876544

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=91.42  E-value=0.24  Score=44.51  Aligned_cols=46  Identities=30%  Similarity=0.482  Sum_probs=39.6

Q ss_pred             hCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       140 ~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +..|...  .+++||+|+|||.|+.|-.++.-|..-|.+|..+-|++.
T Consensus       164 S~~~~~~--~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~  209 (443)
T COG2072         164 SADWPNP--EDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP  209 (443)
T ss_pred             hhcCCCc--cccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence            3445543  689999999999999999999999999999999988764

>PRK06125 short chain dehydrogenase; Provisional

Probab=91.42  E-value=0.28  Score=40.10  Aligned_cols=37  Identities=30%  Similarity=0.379  Sum_probs=33.3

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.|- |.||+.+|+.+...|++|+..+|+.
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~   41 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA   41 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            367899999996 7899999999999999999999864

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=91.39  E-value=0.24  Score=42.46  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=32.2

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|.+|.|.|.|.+|...++.++.+|++|++.+++.
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~  199 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGA  199 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCCh
Confidence            48999999999999999999999999999988764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PLN02740 Alcohol dehydrogenase-like

Probab=91.34  E-value=0.25  Score=43.19  Aligned_cols=36  Identities=33%  Similarity=0.522  Sum_probs=32.4

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      -.|.+|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~  233 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINP  233 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCCh
Confidence            358999999999999999999999999 699988754

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=91.28  E-value=0.16  Score=43.04  Aligned_cols=44  Identities=34%  Similarity=0.455  Sum_probs=37.7

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      |.......|...+|.|+|+|.+|.++|+-|...|. +|..+|...
T Consensus         9 ~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491           9 LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            55445577999999999999999999999999999 588898753

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK06114 short chain dehydrogenase; Provisional

Probab=91.26  E-value=0.31  Score=39.78  Aligned_cols=38  Identities=24%  Similarity=0.283  Sum_probs=34.1

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.+|++.|.| .|.||+++|+.+...|++|+..+|+..
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~   43 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTD   43 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            57899999999 779999999999999999999988653

>PRK07062 short chain dehydrogenase; Provisional

Probab=91.18  E-value=0.28  Score=40.20  Aligned_cols=38  Identities=21%  Similarity=0.254  Sum_probs=34.1

Q ss_pred             cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.|- |.||+++|+.+..-|++|+..+|+.
T Consensus         4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~   42 (265)
T PRK07062          4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDE   42 (265)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3588999999995 7899999999999999999999865

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=91.15  E-value=0.32  Score=39.60  Aligned_cols=37  Identities=35%  Similarity=0.533  Sum_probs=33.7

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|++|..-|++|+..+|+.
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~   43 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITA   43 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH
Confidence            47899999999 68999999999999999999999874

>PRK07856 short chain dehydrogenase; Provisional

Probab=91.14  E-value=0.27  Score=39.98  Aligned_cols=37  Identities=24%  Similarity=0.455  Sum_probs=33.4

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|.+|+..+|+.
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~   40 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA   40 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46799999999 68899999999999999999999865

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=91.14  E-value=0.29  Score=42.50  Aligned_cols=33  Identities=27%  Similarity=0.312  Sum_probs=26.4

Q ss_pred             CeEEEEecChHHHHHHHHhcc-CCCEEEEE-cCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRP-FGVKIIAT-KRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~-fg~~V~~~-~~~~  186 (210)
                      .+|||+|+|+||+..++.+.. -+.++.++ |+..
T Consensus         6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~   40 (338)
T PLN02358          6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI   40 (338)
T ss_pred             eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC
Confidence            599999999999999999764 36888874 4443

>PRK06138 short chain dehydrogenase; Provisional

Probab=91.11  E-value=0.32  Score=39.35  Aligned_cols=37  Identities=24%  Similarity=0.386  Sum_probs=33.1

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.| .|.||+.+|+.+..-|++|+..+|+.
T Consensus         2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~   39 (252)
T PRK06138          2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA   39 (252)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH
Confidence            36799999999 58999999999998999999998864

>PRK07326 short chain dehydrogenase; Provisional

Probab=91.08  E-value=0.28  Score=39.30  Aligned_cols=36  Identities=36%  Similarity=0.456  Sum_probs=32.4

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.++++.|.| .|.||+.+++.+...|.+|+..+|++
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~   40 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ   40 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence            4579999998 69999999999998899999999865

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.08  E-value=0.31  Score=40.54  Aligned_cols=35  Identities=29%  Similarity=0.443  Sum_probs=32.2

Q ss_pred             cccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCC
Q 028302          151 LLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       151 l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      +.||++.|.|-+   .||+++|+.|..-|++|+..+|+
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~   42 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG   42 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence            679999999987   69999999999999999998875

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.05  E-value=0.31  Score=39.90  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=32.5

Q ss_pred             ccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.||++.|.|-+   .||+++|+.|..-|++|+..+|.
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            3789999999985   79999999999999999998775

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=91.05  E-value=0.3  Score=42.50  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=32.2

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      -.|.+|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus       184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~  220 (368)
T TIGR02818       184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINP  220 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            348999999999999999999999999 799988754

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=91.04  E-value=0.3  Score=42.39  Aligned_cols=35  Identities=29%  Similarity=0.425  Sum_probs=31.7

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|.|.|.||...++.++.+|++|+..+.+.
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~  217 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS  217 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            58899999999999999999999999998877654

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=91.03  E-value=0.32  Score=39.59  Aligned_cols=37  Identities=24%  Similarity=0.493  Sum_probs=33.8

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.| .|.||+.+|+.+..-|.+|+.++|+.
T Consensus         8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~   45 (256)
T PRK06124          8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA   45 (256)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            47899999999 68999999999998999999999875

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=91.01  E-value=0.5  Score=39.35  Aligned_cols=55  Identities=24%  Similarity=0.391  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccC----CC-------EEEEEcC
Q 028302          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  184 (210)
Q Consensus       116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~f----g~-------~V~~~~~  184 (210)
                      +|=-+++.+|+.+|-.                +..|.+.++.++|.|..|-.+|+.+...    |.       +++.+|+
T Consensus         4 TaaV~lAgll~Al~~~----------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~   67 (255)
T PF03949_consen    4 TAAVVLAGLLNALRVT----------------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDS   67 (255)
T ss_dssp             HHHHHHHHHHHHHHHH----------------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEET
T ss_pred             hHHHHHHHHHHHHHHh----------------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEec
Confidence            4556778888888755                6789999999999999999999999877    88       5899998


Q ss_pred             CC
Q 028302          185 SW  186 (210)
Q Consensus       185 ~~  186 (210)
                      .+
T Consensus        68 ~G   69 (255)
T PF03949_consen   68 KG   69 (255)
T ss_dssp             TE
T ss_pred             cc
Confidence            63

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK05867 short chain dehydrogenase; Provisional

Probab=91.01  E-value=0.33  Score=39.50  Aligned_cols=37  Identities=27%  Similarity=0.360  Sum_probs=33.5

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.|- |.||+++|+.|...|.+|+..+|+.
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~   43 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL   43 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            478999999995 8999999999999999999998864

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.01  E-value=0.24  Score=40.13  Aligned_cols=37  Identities=30%  Similarity=0.434  Sum_probs=33.3

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++++++.|.| .|.||+.+|+.+...|.+|+.++|+..
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~   39 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDE   39 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4679999999 799999999999999999999998754

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=91.01  E-value=0.32  Score=40.30  Aligned_cols=34  Identities=15%  Similarity=0.272  Sum_probs=28.8

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCC-----------CEEEEEcCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFG-----------VKIIATKRS  185 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg-----------~~V~~~~~~  185 (210)
                      +..+|.|||.|.+|..+++.|...|           .++..+|..
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D   54 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD   54 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence            5789999999999999999987543           388999864

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK09072 short chain dehydrogenase; Provisional

Probab=91.00  E-value=0.33  Score=39.76  Aligned_cols=36  Identities=33%  Similarity=0.509  Sum_probs=32.9

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.++++.|.| .|.||+++++.+...|.+|+..+|+.
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~   39 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNA   39 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            5789999999 69999999999999999999999864

>PRK07774 short chain dehydrogenase; Provisional

Probab=90.99  E-value=0.33  Score=39.24  Aligned_cols=37  Identities=22%  Similarity=0.318  Sum_probs=33.5

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.|- |.||+.+++.+...|.+|+..+|+.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~   40 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA   40 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            367899999995 9999999999999999999999875

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=90.99  E-value=0.3  Score=35.65  Aligned_cols=32  Identities=31%  Similarity=0.414  Sum_probs=25.6

Q ss_pred             eEEEEe-cChHHHHHHHHhc-cCCCEEEE-EcCCC
Q 028302          155 TVFILG-FGNIGVELAKRLR-PFGVKIIA-TKRSW  186 (210)
Q Consensus       155 tvGIiG-~G~IG~~vA~~~~-~fg~~V~~-~~~~~  186 (210)
                      +|+||| .|.+|+++.++|. -..+++.. ++++.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~   35 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR   35 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence            699999 9999999999988 66777554 44444

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=90.97  E-value=0.48  Score=39.44  Aligned_cols=55  Identities=18%  Similarity=0.265  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-----------EEEEEcC
Q 028302          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-----------KIIATKR  184 (210)
Q Consensus       116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-----------~V~~~~~  184 (210)
                      +|=-+++.+|+.+|-.                +..|.+.++.|+|.|.-|-.+|+.+...++           +++.+|+
T Consensus         4 TaaV~lAgllnAlk~~----------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~   67 (254)
T cd00762           4 TASVAVAGLLAALKVT----------------KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDR   67 (254)
T ss_pred             hHHHHHHHHHHHHHHh----------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECC
Confidence            4556777788887733                578999999999999999999999997777           6888888


Q ss_pred             CC
Q 028302          185 SW  186 (210)
Q Consensus       185 ~~  186 (210)
                      ..
T Consensus        68 ~G   69 (254)
T cd00762          68 KG   69 (254)
T ss_pred             CC
Confidence            64

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=90.97  E-value=0.33  Score=39.64  Aligned_cols=37  Identities=30%  Similarity=0.351  Sum_probs=33.6

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      -.+.+|++.|.| .|.||+.+|+.+...|++|+.+++.
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            358899999999 6899999999999999999999876

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=90.89  E-value=0.28  Score=41.83  Aligned_cols=35  Identities=26%  Similarity=0.389  Sum_probs=32.0

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~  186 (210)
                      .|.+|.|+|.|.+|..+++.++.+|++ |++.+++.
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~  198 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSP  198 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            389999999999999999999999999 99988753

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=90.87  E-value=0.35  Score=41.63  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=32.9

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++|++|.|.| .|-||+.+++.|..-|.+|++.+|...
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~   39 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP   39 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence            4689999999 599999999999999999999987643

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=90.86  E-value=0.26  Score=43.03  Aligned_cols=31  Identities=26%  Similarity=0.343  Sum_probs=25.4

Q ss_pred             CeEEEEecChHHHHHHHHhcc-----CCCEEEEEcC
Q 028302          154 KTVFILGFGNIGVELAKRLRP-----FGVKIIATKR  184 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~-----fg~~V~~~~~  184 (210)
                      .+|||=|||+|||.+.|.+-.     -+++|.+.+.
T Consensus         4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd   39 (361)
T PTZ00434          4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVD   39 (361)
T ss_pred             eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeC
Confidence            489999999999999998653     2688888764

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=90.85  E-value=0.29  Score=42.36  Aligned_cols=36  Identities=33%  Similarity=0.489  Sum_probs=32.5

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      -.|.+|.|+|.|.+|+..++.++.+|+ +|++.+++.
T Consensus       186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~  222 (369)
T cd08301         186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNP  222 (369)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            358999999999999999999999999 799988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK12829 short chain dehydrogenase; Provisional

Probab=90.85  E-value=0.29  Score=39.89  Aligned_cols=38  Identities=24%  Similarity=0.328  Sum_probs=34.3

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.++++.|.| .|.||+.+++.|...|.+|+..+|+.
T Consensus         7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~   45 (264)
T PRK12829          7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSE   45 (264)
T ss_pred             hccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            347889999999 69999999999999999999999864

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=90.81  E-value=0.35  Score=39.15  Aligned_cols=36  Identities=36%  Similarity=0.547  Sum_probs=32.8

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..|++|.|.|.|.+|+.+++.++..|.+|++.+++.
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~  168 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD  168 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            457899999999999999999999999999998763

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.80  E-value=0.34  Score=39.82  Aligned_cols=38  Identities=24%  Similarity=0.346  Sum_probs=33.6

Q ss_pred             cccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.|-+   .||+++|+.+..-|++|+..+|+.
T Consensus         6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~   46 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND   46 (258)
T ss_pred             cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            45789999999975   699999999999999999888764

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.79  E-value=0.34  Score=39.70  Aligned_cols=35  Identities=29%  Similarity=0.400  Sum_probs=31.3

Q ss_pred             ccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcC
Q 028302          150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       150 ~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      .|.||++.|.|-+   .||+++|+.+...|++|+..++
T Consensus         3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~   40 (256)
T PRK12859          3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYW   40 (256)
T ss_pred             CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEec
Confidence            5889999999984   7999999999999999998753

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.79  E-value=0.36  Score=40.90  Aligned_cols=54  Identities=17%  Similarity=0.092  Sum_probs=43.7

Q ss_pred             ccccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEec
Q 028302          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLG  201 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~  201 (210)
                      +.++.||++.|||-| -+|+.+|.+|..-|++|..++...+.  +...++|.++...
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~Av  208 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGV  208 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEec
Confidence            468999999999999 89999999999999999998754332  3456777777664

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=90.77  E-value=0.27  Score=36.20  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=27.1

Q ss_pred             eEEEEec-ChHHHHHHHHhcc-CCCEEE-EEcCCC
Q 028302          155 TVFILGF-GNIGVELAKRLRP-FGVKII-ATKRSW  186 (210)
Q Consensus       155 tvGIiG~-G~IG~~vA~~~~~-fg~~V~-~~~~~~  186 (210)
                      +|+|+|+ |++|+.+++.+.. =++++. ++++..
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~   36 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP   36 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence            7999999 9999999999996 888855 566665

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.77  E-value=0.32  Score=39.64  Aligned_cols=36  Identities=31%  Similarity=0.483  Sum_probs=32.4

Q ss_pred             ccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.++++.|.|-+   .||+.+|+.+...|++|+..+|+
T Consensus         2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~   40 (256)
T PRK12748          2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS   40 (256)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence            4678999999974   69999999999999999999887

>PRK07814 short chain dehydrogenase; Provisional

Probab=90.75  E-value=0.36  Score=39.65  Aligned_cols=38  Identities=16%  Similarity=0.267  Sum_probs=33.4

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.++++.|.| .|.||+++++.|..-|++|+..+|+..
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~   45 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTES   45 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            47799999999 557999999999999999999998753

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.72  E-value=0.38  Score=39.58  Aligned_cols=36  Identities=31%  Similarity=0.468  Sum_probs=32.4

Q ss_pred             ccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.||++.|.|-   +.||+++|+.+..-|++|+..+|+
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~   42 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG   42 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence            478999999997   589999999999999999988765

>PRK06500 short chain dehydrogenase; Provisional

Probab=90.70  E-value=0.37  Score=38.89  Aligned_cols=37  Identities=35%  Similarity=0.492  Sum_probs=33.0

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.| .|.||+.+++.+...|++|+..+|+.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~   40 (249)
T PRK06500          3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDP   40 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH
Confidence            36789999999 59999999999999999999998863

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=90.58  E-value=0.3  Score=35.02  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=25.6

Q ss_pred             eEEEEecChHHHHHHHHhccC--CCEEE-EEcCCC
Q 028302          155 TVFILGFGNIGVELAKRLRPF--GVKII-ATKRSW  186 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~~f--g~~V~-~~~~~~  186 (210)
                      ++||||+|++|+...+-+...  +++|. .+|+++
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~   36 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP   36 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH
Confidence            799999999999999777755  66766 567764

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=90.58  E-value=0.3  Score=42.78  Aligned_cols=35  Identities=29%  Similarity=0.445  Sum_probs=32.2

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|.|.|.+|...++.++.+|++|++.+++.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~  212 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS  212 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence            58999999999999999999999999999987653

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=90.57  E-value=0.38  Score=39.24  Aligned_cols=38  Identities=26%  Similarity=0.466  Sum_probs=34.1

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.++++.|.| .|.||+.+|+.+...|.+|+..+|+.
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~   46 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKA   46 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            347799999999 69999999999999999999998864

>PRK07825 short chain dehydrogenase; Provisional

Probab=90.56  E-value=0.37  Score=39.68  Aligned_cols=37  Identities=30%  Similarity=0.404  Sum_probs=33.0

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++.++++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~   39 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDE   39 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            46789999999 59999999999999999999998864

>PRK12862 malic enzyme; Reviewed

Probab=90.55  E-value=1  Score=43.32  Aligned_cols=66  Identities=20%  Similarity=0.162  Sum_probs=53.5

Q ss_pred             CcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-
Q 028302           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (210)
Q Consensus        99 gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-  177 (210)
                      +|++.|- +.     +-+|=.+++.+++.+|-.                ++.+.+.+|.|.|.|.-|..+|+.+...|. 
T Consensus       161 ~ip~f~D-D~-----~GTa~v~la~l~~a~~~~----------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~  218 (763)
T PRK12862        161 KIPVFHD-DQ-----HGTAIIVAAALLNGLKLV----------------GKDIEDVKLVASGAGAAALACLDLLVSLGVK  218 (763)
T ss_pred             CCceEec-Cc-----ccHHHHHHHHHHHHHHHh----------------CCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence            5777774 22     446667777788877743                688999999999999999999999999899 


Q ss_pred             --EEEEEcCCC
Q 028302          178 --KIIATKRSW  186 (210)
Q Consensus       178 --~V~~~~~~~  186 (210)
                        +++.+|+.+
T Consensus       219 ~~~i~~~D~~G  229 (763)
T PRK12862        219 RENIWVTDIKG  229 (763)
T ss_pred             cccEEEEcCCC
Confidence              799999764

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.55  E-value=0.36  Score=40.27  Aligned_cols=36  Identities=25%  Similarity=0.263  Sum_probs=32.1

Q ss_pred             cccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.||++.|.|-+   .||+++|+++..-|++|+..+|+.
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~   41 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNE   41 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCH
Confidence            578999999984   799999999999999999888763

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=90.52  E-value=0.25  Score=46.42  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=31.8

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..++-|+|+|++|+.+|+.|+..|.+++..|..++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~  434 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD  434 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHH
Confidence            46899999999999999999999999999998753

>PLN02253 xanthoxin dehydrogenase

Probab=90.51  E-value=0.38  Score=39.82  Aligned_cols=38  Identities=24%  Similarity=0.399  Sum_probs=33.9

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.+|++.|.| .|.||+++|+.+..-|++|+..++..
T Consensus        14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~   52 (280)
T PLN02253         14 QRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQD   52 (280)
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            467899999999 68999999999999999999998754

>PRK06198 short chain dehydrogenase; Provisional

Probab=90.49  E-value=0.34  Score=39.45  Aligned_cols=38  Identities=21%  Similarity=0.377  Sum_probs=33.9

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVK-IIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~-V~~~~~~~  186 (210)
                      ..+.+|++.|.| .|.||+.+++.+...|.+ |+.++|+.
T Consensus         2 ~~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~   41 (260)
T PRK06198          2 GRLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA   41 (260)
T ss_pred             CCCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH
Confidence            357899999999 589999999999999999 99999864

>PRK14851 hypothetical protein; Provisional

Probab=90.49  E-value=0.22  Score=47.21  Aligned_cols=42  Identities=19%  Similarity=0.197  Sum_probs=35.4

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKR  184 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~  184 (210)
                      |.......|++++|+|+|+|.+|..+|..|...|. ++..+|.
T Consensus        33 ~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~   75 (679)
T PRK14851         33 FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF   75 (679)
T ss_pred             cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence            44345578999999999999999999999998888 6777775

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=90.49  E-value=0.33  Score=38.82  Aligned_cols=38  Identities=32%  Similarity=0.433  Sum_probs=33.4

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++.++++.|.| .|.||+.+++.+..-|.+|+.++|+..
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~   40 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE   40 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            35678999999 699999999999999999999998754

>PRK08278 short chain dehydrogenase; Provisional

Probab=90.49  E-value=0.41  Score=39.66  Aligned_cols=38  Identities=34%  Similarity=0.510  Sum_probs=33.9

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.++++.|.| .|.||+.+|+.+...|++|+.++|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (273)
T PRK08278          3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAE   41 (273)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence            36789999999 699999999999999999999998654

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=90.48  E-value=0.35  Score=40.76  Aligned_cols=35  Identities=37%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+++|.|.| .|-||+.+++.|..-|.+|++++|..
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~   38 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP   38 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            368999999 79999999999999999999887653

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=90.47  E-value=0.4  Score=38.66  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=32.5

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.++++.|.| .|.||+.+++.|..-|.+|+.++++.
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~   37 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR   37 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence            4689999999 69999999999999999999998864

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=90.47  E-value=0.38  Score=39.22  Aligned_cols=37  Identities=30%  Similarity=0.417  Sum_probs=33.3

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+.++|+.
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~   42 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE   42 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            47889999999 58899999999999999999999864

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=90.44  E-value=0.39  Score=39.33  Aligned_cols=36  Identities=31%  Similarity=0.436  Sum_probs=32.6

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.+|++.|.| .|.||+++|+.+...|++|+..+|+.
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSA   40 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6789999999 47899999999999999999999864

>PRK05876 short chain dehydrogenase; Provisional

Probab=90.43  E-value=0.39  Score=39.95  Aligned_cols=38  Identities=16%  Similarity=0.315  Sum_probs=34.0

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+++.
T Consensus         2 ~~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~   40 (275)
T PRK05876          2 DGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDK   40 (275)
T ss_pred             CCcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            347899999998 88999999999999999999998764

>PRK05866 short chain dehydrogenase; Provisional

Probab=90.42  E-value=0.4  Score=40.37  Aligned_cols=40  Identities=25%  Similarity=0.377  Sum_probs=35.6

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ....+.++++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus        34 ~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~   74 (293)
T PRK05866         34 QPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE   74 (293)
T ss_pred             CCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34678899999999 59999999999999999999999864

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=90.40  E-value=0.8  Score=40.69  Aligned_cols=67  Identities=27%  Similarity=0.361  Sum_probs=54.7

Q ss_pred             CCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC
Q 028302           98 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV  177 (210)
Q Consensus        98 ~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~  177 (210)
                      ..|+|.|-      .-.-+|=.+++.+|+.+|-.                ++.|++.+|.+.|.|.-|-.+++.+++.|+
T Consensus       166 ~~IPvFhD------DqqGTaiv~lA~llnalk~~----------------gk~l~d~kiv~~GAGAAgiaia~~l~~~g~  223 (432)
T COG0281         166 MNIPVFHD------DQQGTAIVTLAALLNALKLT----------------GKKLKDQKIVINGAGAAGIAIADLLVAAGV  223 (432)
T ss_pred             CCCCcccc------cccHHHHHHHHHHHHHHHHh----------------CCCccceEEEEeCCcHHHHHHHHHHHHhCC
Confidence            35777663      22456767788888877644                789999999999999999999999999999


Q ss_pred             ---EEEEEcCCC
Q 028302          178 ---KIIATKRSW  186 (210)
Q Consensus       178 ---~V~~~~~~~  186 (210)
                         +|+.+|+++
T Consensus       224 ~~~~i~~~D~~G  235 (432)
T COG0281         224 KEENIFVVDRKG  235 (432)
T ss_pred             CcccEEEEecCC
Confidence               599999874

>PRK12939 short chain dehydrogenase; Provisional

Probab=90.39  E-value=0.44  Score=38.37  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=33.5

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.++++.|.| .|.||+.+|+.+..-|++|+..+|+..
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~   42 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAA   42 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            46789999999 599999999999999999999987643

>PRK12861 malic enzyme; Reviewed

Probab=90.36  E-value=0.92  Score=43.53  Aligned_cols=66  Identities=18%  Similarity=0.129  Sum_probs=54.3

Q ss_pred             CcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-
Q 028302           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (210)
Q Consensus        99 gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-  177 (210)
                      .|++.|- +.     +-+|=.+++.+|+.+|-.                ++.+.+.+|.+.|.|.-|..+|+.+...|. 
T Consensus       157 ~ipvf~D-D~-----qGTa~v~lA~llnal~~~----------------gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~  214 (764)
T PRK12861        157 KIPVFHD-DQ-----HGTAITVSAAFINGLKVV----------------GKSIKEVKVVTSGAGAAALACLDLLVDLGLP  214 (764)
T ss_pred             CCCeecc-cc-----chHHHHHHHHHHHHHHHh----------------CCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence            6888774 22     456667888888888743                688999999999999999999999999999 


Q ss_pred             --EEEEEcCCC
Q 028302          178 --KIIATKRSW  186 (210)
Q Consensus       178 --~V~~~~~~~  186 (210)
                        +++.+|+.+
T Consensus       215 ~~~i~~~D~~G  225 (764)
T PRK12861        215 VENIWVTDIEG  225 (764)
T ss_pred             hhhEEEEcCCC
Confidence              799999754

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=90.34  E-value=0.19  Score=45.04  Aligned_cols=43  Identities=23%  Similarity=0.235  Sum_probs=38.1

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      |.......|...+|.|+|.|.+|.++++-|.--|. ++..+|..
T Consensus        10 wG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~   53 (425)
T cd01493          10 WGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGS   53 (425)
T ss_pred             hHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCC
Confidence            77666788999999999999999999999998888 68888875

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=90.32  E-value=0.4  Score=39.16  Aligned_cols=37  Identities=27%  Similarity=0.322  Sum_probs=33.5

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.| .|.||+++|+++..-|++|+.++++.
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~   42 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE   42 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence            47899999999 78999999999999999999988754

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.27  E-value=0.39  Score=39.47  Aligned_cols=37  Identities=22%  Similarity=0.374  Sum_probs=33.1

Q ss_pred             ccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.|-   +.||+++|+.+..-|++|+..+|+.
T Consensus         4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~   43 (256)
T PRK07889          4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR   43 (256)
T ss_pred             cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence            478999999996   7999999999999999999998754

>PRK14852 hypothetical protein; Provisional

Probab=90.25  E-value=0.33  Score=47.61  Aligned_cols=42  Identities=21%  Similarity=0.242  Sum_probs=36.0

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKR  184 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~  184 (210)
                      |.......|+.++|+|+|+|.+|..+|..|...|. ++..+|.
T Consensus       322 ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~  364 (989)
T PRK14852        322 VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADF  364 (989)
T ss_pred             cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence            55445678999999999999999999999998888 5777775

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=90.24  E-value=0.47  Score=38.90  Aligned_cols=38  Identities=24%  Similarity=0.430  Sum_probs=34.1

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+++..
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~   44 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGG   44 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            47899999999 789999999999999999999987653

>PRK06141 ornithine cyclodeaminase; Validated

Probab=90.23  E-value=0.37  Score=41.30  Aligned_cols=36  Identities=14%  Similarity=0.045  Sum_probs=29.4

Q ss_pred             cccCeEEEEecChHHHHHHHHhc-cCC-CEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLR-PFG-VKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~-~fg-~~V~~~~~~~  186 (210)
                      ...++|+|||.|..|+..++.+. .++ -+|..|+|++
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~  160 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDP  160 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCH
Confidence            35789999999999999998544 355 4799999975

>PRK06194 hypothetical protein; Provisional

Probab=90.23  E-value=0.41  Score=39.72  Aligned_cols=37  Identities=22%  Similarity=0.386  Sum_probs=33.0

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.| .|.||+.+|+.|..-|++|+.++++.
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~   40 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQ   40 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46789999999 68999999999999999999999864

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=90.21  E-value=0.44  Score=41.73  Aligned_cols=37  Identities=32%  Similarity=0.522  Sum_probs=32.9

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ..++|+|+|-|..|+.+++.++.+|.+|+.+|..+..
T Consensus        11 ~~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~   47 (395)
T PRK09288         11 SATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANA   47 (395)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            3569999999999999999999999999999987643

>PRK08589 short chain dehydrogenase; Validated

Probab=90.21  E-value=0.42  Score=39.55  Aligned_cols=36  Identities=28%  Similarity=0.272  Sum_probs=33.0

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.||++.|.|- |.||+++|+.+..-|++|+..+|+
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            478999999995 889999999999999999999887

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=90.17  E-value=0.3  Score=42.17  Aligned_cols=35  Identities=26%  Similarity=0.323  Sum_probs=31.5

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~  186 (210)
                      .|++|.|.|.|.+|+..++.++.+|++ |++.+++.
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~  211 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDD  211 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            489999999999999999999999995 98887754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=90.16  E-value=0.32  Score=46.60  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=31.0

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|.+|..+|..+..-|++|+.+|++.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~  368 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP  368 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence            589999999999999999998899999999875

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=90.15  E-value=0.34  Score=42.92  Aligned_cols=31  Identities=26%  Similarity=0.382  Sum_probs=25.0

Q ss_pred             CeEEEEecChHHHHHHHHhc--cC-CCEEEEEcC
Q 028302          154 KTVFILGFGNIGVELAKRLR--PF-GVKIIATKR  184 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~--~f-g~~V~~~~~  184 (210)
                      .+|||.|||+||+.+.|.+.  .| ..+|.+.+.
T Consensus        61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd   94 (395)
T PLN03096         61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAIND   94 (395)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence            58999999999999999976  43 468885543

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=90.11  E-value=0.33  Score=43.76  Aligned_cols=33  Identities=33%  Similarity=0.508  Sum_probs=27.9

Q ss_pred             cccCeEEEEecChHHHHHHHHhcc-----CCCEEEEEc
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRP-----FGVKIIATK  183 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~-----fg~~V~~~~  183 (210)
                      ...++|||-|||+||+.++|.+-.     -+++|.+..
T Consensus       125 ~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn  162 (477)
T PRK08289        125 IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIV  162 (477)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEe
Confidence            558899999999999999998642     578988884

>PRK07478 short chain dehydrogenase; Provisional

Probab=90.11  E-value=0.36  Score=39.28  Aligned_cols=38  Identities=34%  Similarity=0.399  Sum_probs=33.7

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++.+|++.|.| .|.||+++|+.+..-|.+|+..+|+.+
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~   41 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQA   41 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46789999999 589999999999999999999988643

>PRK09242 tropinone reductase; Provisional

Probab=90.09  E-value=0.43  Score=38.87  Aligned_cols=37  Identities=27%  Similarity=0.476  Sum_probs=33.5

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.| .|.||+.+++++...|++|+..+|+.
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~   43 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDA   43 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            47899999999 58999999999999999999998764

>PRK07035 short chain dehydrogenase; Provisional

Probab=90.09  E-value=0.44  Score=38.63  Aligned_cols=37  Identities=32%  Similarity=0.494  Sum_probs=33.9

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.| .|.||+++++.+..-|++|+..+|+.
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~   42 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL   42 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999 88999999999999999999999864

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=90.08  E-value=0.24  Score=49.01  Aligned_cols=43  Identities=30%  Similarity=0.521  Sum_probs=36.9

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCC------EEEEEcCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV------KIIATKRS  185 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~------~V~~~~~~  185 (210)
                      |.......|...+|.|||.|.+|.++++-|...|+      ++..+|..
T Consensus       409 ~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D  457 (1008)
T TIGR01408       409 FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPD  457 (1008)
T ss_pred             cCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCC
Confidence            55545678999999999999999999999998887      88888863

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=90.07  E-value=0.4  Score=41.59  Aligned_cols=35  Identities=26%  Similarity=0.494  Sum_probs=31.8

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus       186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~  221 (368)
T cd08300         186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINP  221 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            58999999999999999999999999 699987754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=90.06  E-value=0.36  Score=41.34  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=31.1

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -++|||||.|-+|..+|..+..=|.+|..+|++.
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~   36 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP   36 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence            4799999999999999999999669999999984

>PRK07063 short chain dehydrogenase; Provisional

Probab=90.03  E-value=0.45  Score=38.86  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=33.5

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~   41 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDA   41 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999 68999999999999999999999864

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.03  E-value=0.46  Score=39.11  Aligned_cols=37  Identities=27%  Similarity=0.347  Sum_probs=32.6

Q ss_pred             cccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ..+.||++.|.|-+   .||+++|+.+..-|++|+..+|+
T Consensus         4 ~~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~   43 (260)
T PRK06603          4 GLLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS   43 (260)
T ss_pred             cccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc
Confidence            45789999999997   49999999999999999988765

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=89.97  E-value=0.34  Score=46.25  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=31.2

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|.+|..+|..+..-|++|+.||++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ  346 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence            689999999999999999999999999999875

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=89.97  E-value=1.2  Score=42.82  Aligned_cols=66  Identities=18%  Similarity=0.217  Sum_probs=53.2

Q ss_pred             CcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-
Q 028302           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (210)
Q Consensus        99 gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-  177 (210)
                      +|++.|- +     -+-+|=-+++.+++.+|-.                ++.+.+.+|.|.|.|.-|..+|+.+...|. 
T Consensus       153 ~ip~f~D-D-----~~GTa~v~lA~l~na~~~~----------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~  210 (752)
T PRK07232        153 DIPVFHD-D-----QHGTAIISAAALLNALELV----------------GKKIEDVKIVVSGAGAAAIACLNLLVALGAK  210 (752)
T ss_pred             CCCeecc-c-----cchHHHHHHHHHHHHHHHh----------------CCChhhcEEEEECccHHHHHHHHHHHHcCCC
Confidence            5777764 2     2456667777788777743                688999999999999999999999998898 


Q ss_pred             --EEEEEcCCC
Q 028302          178 --KIIATKRSW  186 (210)
Q Consensus       178 --~V~~~~~~~  186 (210)
                        +++.+|+.+
T Consensus       211 ~~~i~~~D~~G  221 (752)
T PRK07232        211 KENIIVCDSKG  221 (752)
T ss_pred             cccEEEEcCCC
Confidence              799999864

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=89.93  E-value=0.44  Score=40.27  Aligned_cols=36  Identities=31%  Similarity=0.452  Sum_probs=32.2

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -.+.+|.|+|.|.+|+.+++.++.+|++|+..+++.
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~  196 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSP  196 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            446899999999999999999999999999988754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=89.93  E-value=6.9  Score=29.52  Aligned_cols=94  Identities=9%  Similarity=0.040  Sum_probs=57.2

Q ss_pred             CCcceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEcC---CCCCHHHHhcCCCceEEEEcccc
Q 028302           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVG   86 (210)
Q Consensus        10 ~~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~~---~~~~~~~l~~~p~Lk~i~~~~aG   86 (210)
                      -...+|++.+....-.......+.+....+........++.+..++||++++..   ..++.+++.  |..-++   ..|
T Consensus        26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~i~~~~ik--pGa~Vi---dvg  100 (140)
T cd05212          26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEKVPTEWIK--PGATVI---NCS  100 (140)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCccCHHHcC--CCCEEE---EcC
Confidence            345688888876554444444444554455544333445677889999999743   346777766  443333   666


Q ss_pred             CCccchhHHhhCCcEEEecCCC
Q 028302           87 LEGVDINAATRCGIKVARIPGD  108 (210)
Q Consensus        87 ~d~id~~~~~~~gi~v~~~~~~  108 (210)
                      .+..+.+.+.++.-.++-+||-
T Consensus       101 ~~~~~~~~~~~~a~~~tPvpgG  122 (140)
T cd05212         101 PTKLSGDDVKESASLYVPMTGG  122 (140)
T ss_pred             CCcccchhhHhhceEEcCCCCC
Confidence            6665555677766556666654

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK12367 short chain dehydrogenase; Provisional

Probab=89.89  E-value=0.47  Score=38.97  Aligned_cols=38  Identities=37%  Similarity=0.487  Sum_probs=33.9

Q ss_pred             cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.|+++.|.|- |.||+++|+.+..-|++|+..+|+.
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~   48 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK   48 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence            4578999999995 7899999999999999999998865

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=89.85  E-value=0.49  Score=40.11  Aligned_cols=38  Identities=24%  Similarity=0.261  Sum_probs=33.9

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .++.++++.|+|.|..+++++-.+...|+ +|..++|+.
T Consensus       120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            45788999999999999999999988898 799999974

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.84  E-value=0.46  Score=38.14  Aligned_cols=37  Identities=30%  Similarity=0.476  Sum_probs=32.7

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEE-cCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIAT-KRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~-~~~~  186 (210)
                      ++.++++.|+| .|.||+.+|+.+..-|++|+.. +|+.
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~   40 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE   40 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            47789999999 5999999999999889999988 8764

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=89.82  E-value=0.36  Score=46.09  Aligned_cols=33  Identities=24%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|.+|..+|..+..-|++|+.+|++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ  346 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence            589999999999999999998899999999875

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK07577 short chain dehydrogenase; Provisional

Probab=89.78  E-value=0.53  Score=37.60  Aligned_cols=37  Identities=32%  Similarity=0.494  Sum_probs=32.2

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      .++++.|.| .|.||+.+|+.+..-|++|+..+|+..+
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~   39 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID   39 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            468899999 5899999999999999999999986543

>PRK05875 short chain dehydrogenase; Provisional

Probab=89.77  E-value=0.46  Score=39.16  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=32.8

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.++++.|.|. |.||+++++.+..-|.+|+.++|+.
T Consensus         5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~   41 (276)
T PRK05875          5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNP   41 (276)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            67899999995 8999999999999999999999864

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=89.77  E-value=0.47  Score=39.18  Aligned_cols=38  Identities=34%  Similarity=0.410  Sum_probs=34.1

Q ss_pred             cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.++++.|.|- |.||+++++.|..-|.+|+.++|+.
T Consensus         6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~   44 (278)
T PRK08277          6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ   44 (278)
T ss_pred             eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4578999999994 8999999999999999999999864

>PRK13529 malate dehydrogenase; Provisional

Probab=89.76  E-value=2.3  Score=39.41  Aligned_cols=90  Identities=19%  Similarity=0.219  Sum_probs=64.7

Q ss_pred             CCCceEEEEccccCCc-cchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccc
Q 028302           74 ANQMKLIMQFGVGLEG-VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL  152 (210)
Q Consensus        74 ~p~Lk~i~~~~aG~d~-id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~  152 (210)
                      .|+. +||.==-+..+ +.+..-.+..+++.|-      .-+-+|--+++.+|+..|-.                +..|.
T Consensus       238 ~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnD------DiQGTaaV~LAgll~A~r~~----------------g~~l~  294 (563)
T PRK13529        238 FPNA-LLQFEDFAQKNARRILERYRDEICTFND------DIQGTGAVTLAGLLAALKIT----------------GEPLS  294 (563)
T ss_pred             CCCe-EEehhhcCCchHHHHHHHhccCCCeecc------ccchHHHHHHHHHHHHHHHh----------------CCChh
Confidence            4664 55544333322 3333333456777763      23667888999999998844                67899


Q ss_pred             cCeEEEEecChHHHHHHHHhcc----CCC-------EEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRP----FGV-------KIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~----fg~-------~V~~~~~~~  186 (210)
                      +.++.++|.|+.|-.+|+.+..    -|+       +++.+|+.+
T Consensus       295 d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~G  339 (563)
T PRK13529        295 DQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQG  339 (563)
T ss_pred             hcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence            9999999999999999999885    577       899999864

>PLN02240 UDP-glucose 4-epimerase

Probab=89.74  E-value=0.52  Score=40.30  Aligned_cols=36  Identities=28%  Similarity=0.510  Sum_probs=32.1

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.+++|.|.| .|.||+.+++.|..-|.+|+++++.
T Consensus         2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~   38 (352)
T PLN02240          2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL   38 (352)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999998 6999999999999889999999864

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=89.73  E-value=0.43  Score=41.36  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=32.2

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ..|.+|.|+|.|.+|...++.++.+|+ +|++.+++.
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~  219 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINE  219 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            458999999999999999999999999 699888753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK06196 oxidoreductase; Provisional

Probab=89.73  E-value=0.47  Score=40.21  Aligned_cols=38  Identities=29%  Similarity=0.444  Sum_probs=33.9

Q ss_pred             cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.++++.|.|- |.||+++|+.+..-|++|+..+|+.
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~   60 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRP   60 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3578999999995 8999999999999999999999864

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=89.70  E-value=0.5  Score=39.99  Aligned_cols=37  Identities=24%  Similarity=0.277  Sum_probs=33.1

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ++.++++.|+|.|..|++++--|...|+ +|..++|+.
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~  161 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            4668999999999999999999999998 688999864

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=89.70  E-value=0.49  Score=38.57  Aligned_cols=37  Identities=27%  Similarity=0.406  Sum_probs=33.4

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +.++++.|.| .|.||+++|+.|...|++|+..+|...
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~   41 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPA   41 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            6789999999 699999999999999999999998653

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=89.66  E-value=0.49  Score=40.75  Aligned_cols=39  Identities=33%  Similarity=0.273  Sum_probs=34.9

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +++..+++|.|.| .|-||+.+++.|..-|.+|++.+|..
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~   44 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP   44 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            5788899999999 79999999999998899999887753

>PRK12742 oxidoreductase; Provisional

Probab=89.65  E-value=0.53  Score=37.69  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=31.2

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      .+.++++.|.| .|.||+++|+.+...|++|+...+
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~   38 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA   38 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence            47799999999 599999999999999999987754

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.56  E-value=0.48  Score=39.25  Aligned_cols=35  Identities=23%  Similarity=0.422  Sum_probs=31.9

Q ss_pred             cccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCC
Q 028302          151 LLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       151 l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      +.||++.|.|-+   .||+++|+.+..-|++|+..+|+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999987   59999999999999999988775

>PRK05872 short chain dehydrogenase; Provisional

Probab=89.52  E-value=0.53  Score=39.59  Aligned_cols=39  Identities=38%  Similarity=0.515  Sum_probs=34.7

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+.|+++.|.| .|.||+++|+.+..-|++|+..+|+..
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   44 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEA   44 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468899999999 588999999999999999999988643

>PRK08226 short chain dehydrogenase; Provisional

Probab=89.51  E-value=0.52  Score=38.47  Aligned_cols=37  Identities=32%  Similarity=0.444  Sum_probs=33.5

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.| .|.||+.+|+.+..-|.+|+..+|+.
T Consensus         3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~   40 (263)
T PRK08226          3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISP   40 (263)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence            36789999999 88999999999999999999999864

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=89.49  E-value=0.41  Score=41.61  Aligned_cols=35  Identities=20%  Similarity=0.397  Sum_probs=31.6

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|.+|.|.|.|.||+..++.++.+|+ +|++.+++.
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~  226 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNE  226 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH
Confidence            47899999999999999999999999 699988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK05993 short chain dehydrogenase; Provisional

Probab=89.49  E-value=0.49  Score=39.26  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=31.5

Q ss_pred             cCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++++.|.|. |.||+++|+.+..-|.+|+..+|+..
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~   39 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEE   39 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            678999996 99999999999999999999998753

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=89.46  E-value=0.5  Score=39.79  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=32.0

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ..|.+|.|.|.|.+|+.+++.++.+|.+|++.+++
T Consensus       154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~  188 (319)
T cd08242         154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRH  188 (319)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCC
Confidence            45899999999999999999999999999988765

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=89.43  E-value=0.49  Score=40.28  Aligned_cols=35  Identities=23%  Similarity=0.370  Sum_probs=32.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|.+|.|.|.|.+|+.+++.++.+|++|++.+++.
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~  197 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS  197 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh
Confidence            57899999999999999999999999999988753

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=89.42  E-value=0.5  Score=40.80  Aligned_cols=36  Identities=19%  Similarity=0.340  Sum_probs=32.3

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -.|.+|.|.|. |.+|+..++.+|.+|++|++.+++.
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~  193 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS  193 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            35899999998 9999999999999999999987654

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.40  E-value=0.55  Score=38.66  Aligned_cols=36  Identities=31%  Similarity=0.335  Sum_probs=31.4

Q ss_pred             ccccCeEEEEe---cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG---~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.||++.|.|   -+.||+++|+.+...|++|+..++.
T Consensus         3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~   41 (261)
T PRK08690          3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVV   41 (261)
T ss_pred             ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence            37899999999   4589999999999999999887653

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=89.36  E-value=0.28  Score=45.90  Aligned_cols=35  Identities=26%  Similarity=0.454  Sum_probs=31.8

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ...+.|+|+|++|+.+++.++..|.+++..|+.++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~  434 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDIS  434 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHH
Confidence            45799999999999999999999999999998753

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=89.33  E-value=0.54  Score=38.50  Aligned_cols=37  Identities=32%  Similarity=0.402  Sum_probs=32.4

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ..+.+|++.|.| .+.||+++|+.+..-|++|+...++
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   41 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS   41 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            468899999999 5889999999999999999887553

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.27  E-value=0.61  Score=41.73  Aligned_cols=36  Identities=25%  Similarity=0.491  Sum_probs=31.3

Q ss_pred             ccc-CeEEEEecChHHHHHHHHhccC--CCEEEEEcCCC
Q 028302          151 LLG-KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSW  186 (210)
Q Consensus       151 l~~-~tvGIiG~G~IG~~vA~~~~~f--g~~V~~~~~~~  186 (210)
                      +.+ +++.|+|+|.+|...++.+...  |++|.++|...
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~   42 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRE   42 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            556 7899999999999999999977  68999999653

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=89.24  E-value=0.43  Score=45.48  Aligned_cols=33  Identities=27%  Similarity=0.215  Sum_probs=30.2

Q ss_pred             CeEEEEecChHHHHHHHHhc-cCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~-~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|.+|..+|..+. .-|++|+.||.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~  338 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP  338 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            58999999999999999987 5899999999875

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=89.23  E-value=0.52  Score=38.30  Aligned_cols=37  Identities=30%  Similarity=0.380  Sum_probs=33.6

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.|. |.||+.+++.|..-|.+|+..+|.+
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~   41 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ   41 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence            467899999995 9999999999999999999998865

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.20  E-value=0.53  Score=39.14  Aligned_cols=37  Identities=30%  Similarity=0.383  Sum_probs=32.2

Q ss_pred             cccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .-+.||++.|.|-   +.||+++|+.+..-|++|+...|.
T Consensus         6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~   45 (272)
T PRK08159          6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQG   45 (272)
T ss_pred             ccccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence            4467899999998   479999999999999999887664

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=89.19  E-value=0.43  Score=42.78  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=26.7

Q ss_pred             CeEEEEecChHHHHHHHHhc-c--CCCEEEEEcCC
Q 028302          154 KTVFILGFGNIGVELAKRLR-P--FGVKIIATKRS  185 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~-~--fg~~V~~~~~~  185 (210)
                      .+|||=|||+|||.+.|.+. .  -+++|.+++..
T Consensus        76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~  110 (442)
T PLN02237         76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  110 (442)
T ss_pred             EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC
Confidence            69999999999999999854 2  46899988753

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=89.18  E-value=0.31  Score=45.01  Aligned_cols=34  Identities=21%  Similarity=0.556  Sum_probs=31.2

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -.+-|+|+|++|+.+|+.++..|.+|+.+|+.++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            5789999999999999999999999999998753

>PRK06720 hypothetical protein; Provisional

Probab=89.10  E-value=0.63  Score=36.15  Aligned_cols=37  Identities=35%  Similarity=0.416  Sum_probs=32.7

Q ss_pred             ccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.|-+ .||+.+|+.+..-|++|+.++++.
T Consensus        13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~   50 (169)
T PRK06720         13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ   50 (169)
T ss_pred             ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            3789999999976 599999999999999999998764

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.08  E-value=0.53  Score=38.80  Aligned_cols=35  Identities=29%  Similarity=0.327  Sum_probs=30.8

Q ss_pred             ccccCeEEEEe---cChHHHHHHHHhccCCCEEEEEcC
Q 028302          150 TLLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       150 ~l~~~tvGIiG---~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      .+.+|++.|.|   -+.||+++|+++..-|++|+..++
T Consensus         3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~   40 (260)
T PRK06997          3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYV   40 (260)
T ss_pred             ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEcc
Confidence            37899999999   468999999999999999988764

>PRK05854 short chain dehydrogenase; Provisional

Probab=89.04  E-value=0.59  Score=39.73  Aligned_cols=39  Identities=31%  Similarity=0.478  Sum_probs=35.0

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+++||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         9 ~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~   48 (313)
T PRK05854          9 VPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNR   48 (313)
T ss_pred             CcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4678999999999 78899999999999999999998864

>PRK08303 short chain dehydrogenase; Provisional

Probab=88.99  E-value=0.63  Score=39.51  Aligned_cols=38  Identities=29%  Similarity=0.375  Sum_probs=33.7

Q ss_pred             cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.|- +.||+++|+.+..-|++|+..+|+.
T Consensus         4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~   42 (305)
T PRK08303          4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRST   42 (305)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence            4588999999996 5799999999999999999998864

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=88.97  E-value=0.56  Score=40.01  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=32.1

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -.|.+|.|.|. |.+|+.+++.++.+|++|++..++.
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~  186 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD  186 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            35899999997 9999999999999999999887654

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=88.92  E-value=0.57  Score=39.95  Aligned_cols=36  Identities=31%  Similarity=0.376  Sum_probs=32.4

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -.|.++.|.|.|.+|+.++++++.+|++|++++++.
T Consensus       168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~  203 (337)
T cd05283         168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSP  203 (337)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            357899999999999999999999999999998764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=88.82  E-value=1.3  Score=37.38  Aligned_cols=53  Identities=23%  Similarity=0.213  Sum_probs=42.4

Q ss_pred             ccccccCeEEEEecChH-HHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEe
Q 028302          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGML  200 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~I-G~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~  200 (210)
                      +.+|+|+++.|||-++| |+-+|.+|..-+++|.......+.  ....++|.++..
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~A  206 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVA  206 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhCCEEEEe
Confidence            56899999999999986 999999999999999999875532  245556655544

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=88.78  E-value=0.54  Score=38.66  Aligned_cols=35  Identities=23%  Similarity=0.501  Sum_probs=31.8

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS  185 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~  185 (210)
                      -.|.++.|.|.|.+|+.+++.++.+|++ |++.+++
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~  131 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPD  131 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCC
Confidence            3579999999999999999999999999 9998864

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK06139 short chain dehydrogenase; Provisional

Probab=88.77  E-value=0.57  Score=40.35  Aligned_cols=38  Identities=26%  Similarity=0.372  Sum_probs=34.2

Q ss_pred             cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.++++.|.|. |.||+++|+.+..-|++|+..+|+.
T Consensus         3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~   41 (330)
T PRK06139          3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDE   41 (330)
T ss_pred             cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3578999999996 8999999999999999999999864

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=88.76  E-value=0.66  Score=37.93  Aligned_cols=38  Identities=32%  Similarity=0.355  Sum_probs=33.3

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.+|++.|.| -|.||+++|+.+...|++|+...++.
T Consensus         3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~   41 (261)
T PRK08936          3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSD   41 (261)
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCC
Confidence            358899999999 78899999999999999998876643

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=88.72  E-value=0.46  Score=45.30  Aligned_cols=33  Identities=21%  Similarity=0.146  Sum_probs=30.7

Q ss_pred             CeEEEEecChHHHHHHHHhc-cCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~-~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|.+|..+|..+. .-|++|..||++.
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            68999999999999999988 7799999999875

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=88.71  E-value=1.3  Score=41.79  Aligned_cols=37  Identities=24%  Similarity=0.262  Sum_probs=34.1

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+++|.|||-|..|-..|..|+..|.+|..|++...
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~  344 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE  344 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence            4699999999999999999999999999999997654

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.67  E-value=0.46  Score=41.15  Aligned_cols=31  Identities=29%  Similarity=0.314  Sum_probs=27.0

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+|+|||.|++|..+|..|...| .|..|.++
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~   38 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRS   38 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCC
Confidence            67999999999999999999888 67777664

>KOG1687 consensus NADH-ubiquinone oxidoreductase, NUFS7/PSST/20 kDa subunit [Energy production and conversion]

Probab=88.65  E-value=1.8  Score=32.47  Aligned_cols=79  Identities=19%  Similarity=0.223  Sum_probs=53.9

Q ss_pred             CCceEEEEcC---C---CCCHHHHhcCCCceEEEEccc-----cCCccchhHHh--hCCcEE-EecCCCCCCCchhHHHH
Q 028302           54 ANYHLCVVKT---M---RLDSNCISRANQMKLIMQFGV-----GLEGVDINAAT--RCGIKV-ARIPGDVTGNAASCAEL  119 (210)
Q Consensus        54 ~~adv~i~~~---~---~~~~~~l~~~p~Lk~i~~~~a-----G~d~id~~~~~--~~gi~v-~~~~~~~~~~a~~vAE~  119 (210)
                      ..+|.+++.+   .   +--..+.+++|.-|||.+.|+     |+=|......+  ++=|+| ..+||.     .+.||.
T Consensus        70 RQaD~iivAGTlTnKMAPalrkvYdQMPEpr~VisMGsCangGGyyhysYSvvRGcDriiPVDiYvPGC-----PPtaEA  144 (168)
T KOG1687|consen   70 RQADLIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC-----PPTAEA  144 (168)
T ss_pred             ccccEEEEeccchhhhcHHHHHHHhhCCCCeeEEEecccccCCceEEEEehhhccccceeeeeeecCCC-----CCCHHH
Confidence            4678777632   1   222567888999999987754     55455433332  233555 567887     779999


Q ss_pred             HHHHHHHHHhhHHHHHHH
Q 028302          120 TIYLMLGLLRKQNEMRMA  137 (210)
Q Consensus       120 ~l~~~L~~~R~~~~~~~~  137 (210)
                      .+..+|-+.+++.+....
T Consensus       145 llygilqLqkKi~R~r~~  162 (168)
T KOG1687|consen  145 LLYGILQLQKKIKRIRPL  162 (168)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999999999865444

>PTZ00325 malate dehydrogenase; Provisional

Probab=88.64  E-value=0.77  Score=39.60  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=31.0

Q ss_pred             cccccCeEEEEec-ChHHHHHHHHhc--cCCCEEEEEcC
Q 028302          149 ETLLGKTVFILGF-GNIGVELAKRLR--PFGVKIIATKR  184 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~IG~~vA~~~~--~fg~~V~~~~~  184 (210)
                      .-++.++|+|+|. |+||..+|-.+.  .+.-++..+|.
T Consensus         4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            3467789999999 999999999988  55568999998

>PRK06182 short chain dehydrogenase; Validated

Probab=88.48  E-value=0.67  Score=38.19  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=31.6

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~   37 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRV   37 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999 59999999999999999999998864

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=88.45  E-value=0.74  Score=39.50  Aligned_cols=34  Identities=15%  Similarity=0.272  Sum_probs=28.4

Q ss_pred             cCeEEEEecChHHHHHHHHhc--cCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLR--PFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~--~fg~~V~~~~~~~  186 (210)
                      ..+|+|||.|+||..+|-.+.  +..-++..+|...
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            358999999999999999876  5555899999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=88.43  E-value=0.63  Score=39.78  Aligned_cols=37  Identities=24%  Similarity=0.194  Sum_probs=33.1

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++.+++|.|.| .|-||+.+++.|..-|.+|++.++..
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~   40 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRS   40 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeccc
Confidence            46789999999 59999999999999999999998754

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=88.38  E-value=0.66  Score=43.75  Aligned_cols=37  Identities=30%  Similarity=0.303  Sum_probs=33.9

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -.|++|.|||.|..|-..|..|+..|.+|..|++...
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~  361 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE  361 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4799999999999999999999999999999998643

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=88.32  E-value=0.7  Score=37.92  Aligned_cols=37  Identities=30%  Similarity=0.371  Sum_probs=33.2

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.+...|++|+..+++.
T Consensus         7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~   44 (265)
T PRK07097          7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ   44 (265)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence            46889999999 58999999999999999999998765

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=88.31  E-value=0.7  Score=39.83  Aligned_cols=37  Identities=27%  Similarity=0.248  Sum_probs=33.0

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+++++|.|.| .|-||+.+++.|..-|.+|+++|+..
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            46679999999 69999999999998899999999854

>PRK09135 pteridine reductase; Provisional

Probab=88.30  E-value=0.72  Score=37.03  Aligned_cols=36  Identities=22%  Similarity=0.292  Sum_probs=32.1

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..++++.|.| .|.||+.+++.+..-|++|+..+|+.
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~   40 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRS   40 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3568999999 69999999999999999999999863

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=88.29  E-value=0.65  Score=40.17  Aligned_cols=36  Identities=25%  Similarity=0.237  Sum_probs=31.9

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..|.++.|.|.|.+|+.+++.++.+|++|+..+++.
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~  214 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSD  214 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            357899999999999999999999999998887653

>PRK07985 oxidoreductase; Provisional

Probab=88.29  E-value=0.7  Score=38.88  Aligned_cols=37  Identities=16%  Similarity=0.153  Sum_probs=32.8

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|...|++|+..+++.
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~   83 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPV   83 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCc
Confidence            47899999999 68999999999999999999887643

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=88.28  E-value=0.64  Score=40.56  Aligned_cols=35  Identities=31%  Similarity=0.345  Sum_probs=31.5

Q ss_pred             ccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+++|.|.|- |-||+.+++.|..-|.+|++++|..
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            5689999995 9999999999999999999999753

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=88.23  E-value=0.74  Score=37.83  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=30.6

Q ss_pred             ccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcC
Q 028302          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       150 ~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      ++.||++.|.|-   +.||+++|+.+..-|++|+...+
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~   40 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYL   40 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEec
Confidence            478999999997   48999999999999999977654

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=88.23  E-value=1.6  Score=36.83  Aligned_cols=50  Identities=26%  Similarity=0.172  Sum_probs=40.4

Q ss_pred             HHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcC
Q 028302          126 GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       126 ~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      +..|++-...++         .+.+|+..|++|+| .|.||..+||-+.+-+++....-|
T Consensus       149 aa~r~Vl~~~~~---------lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r  199 (351)
T COG5322         149 AACRQVLKHFAQ---------LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLR  199 (351)
T ss_pred             HHHHHHHHHHHH---------hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecc
Confidence            445665554444         38999999999999 699999999999999998777664

>PRK08324 short chain dehydrogenase; Validated

Probab=88.17  E-value=0.66  Score=44.00  Aligned_cols=40  Identities=30%  Similarity=0.411  Sum_probs=35.7

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ...+.|+++.|.| .|.||+.+|+.+...|.+|+..+|+..
T Consensus       417 ~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~  457 (681)
T PRK08324        417 PKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE  457 (681)
T ss_pred             CcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            4567899999999 699999999999999999999998753

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=88.14  E-value=0.65  Score=44.96  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=30.3

Q ss_pred             CeEEEEecChHHHHH-HHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVEL-AKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~v-A~~~~~fg~~V~~~~~~~  186 (210)
                      +++.|+|+|.+|... |+.|+..|.+|.++|...
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~   38 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE   38 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence            469999999999998 999999999999999754

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.14  E-value=0.84  Score=36.67  Aligned_cols=37  Identities=32%  Similarity=0.337  Sum_probs=33.0

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.| .|.||+.+++.|..-|++|+..+|+.
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~   41 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTE   41 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46789999999 77999999999999999999999865

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=88.14  E-value=0.72  Score=37.57  Aligned_cols=37  Identities=27%  Similarity=0.360  Sum_probs=33.5

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.| .|.||+.+++.+..-|++|+..+++.
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~   45 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence            47799999999 78999999999999999999988764

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=88.09  E-value=0.66  Score=38.62  Aligned_cols=36  Identities=33%  Similarity=0.445  Sum_probs=31.9

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~  186 (210)
                      -.|.+|.|.|.|.+|+.++++++.+|++ |++.+++.
T Consensus       128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~  164 (312)
T cd08269         128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRP  164 (312)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence            3579999999999999999999999999 88877653

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=88.05  E-value=1.2  Score=40.00  Aligned_cols=37  Identities=27%  Similarity=0.404  Sum_probs=33.0

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...|++|.|||-|.+|-.+|+.+..+|.+|..+.+..
T Consensus       269 ~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       269 VYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            3568999999999999999999999999998887653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=88.03  E-value=0.68  Score=39.81  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=31.9

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|++|.|.|.|.+|+.+++.++.+|+ +|++.+++.
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~  212 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSP  212 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            68999999999999999999999999 999887643

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK06180 short chain dehydrogenase; Provisional

Probab=88.01  E-value=0.66  Score=38.40  Aligned_cols=35  Identities=31%  Similarity=0.303  Sum_probs=31.3

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~   38 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSE   38 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCH
Confidence            368899999 59999999999999999999999864

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=87.98  E-value=0.67  Score=41.32  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=31.4

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +++|.|||-|.+|-++|..++.+|.+|..+++..
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~  190 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS  190 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            5799999999999999999999999999998754

>PRK06914 short chain dehydrogenase; Provisional

Probab=87.98  E-value=0.65  Score=38.36  Aligned_cols=36  Identities=25%  Similarity=0.227  Sum_probs=31.8

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .++++.|.| .|.||+.+++.+..-|++|+.++|+..
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~   38 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPE   38 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            568899998 699999999999999999999988653

>PRK06701 short chain dehydrogenase; Provisional

Probab=87.93  E-value=0.76  Score=38.57  Aligned_cols=38  Identities=26%  Similarity=0.230  Sum_probs=34.1

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.++++.|.| .|.||.++|+.+..-|++|+.++++.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~   80 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE   80 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            467899999999 68899999999999999999998864

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=87.89  E-value=0.67  Score=39.16  Aligned_cols=36  Identities=28%  Similarity=0.447  Sum_probs=31.4

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~  186 (210)
                      ..|.+|.|+|.|.+|+.+++.++++|++ |++.+++.
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~  194 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNE  194 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence            3578999999999999999999999998 78777653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=87.85  E-value=0.7  Score=40.16  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=30.3

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      +.++.|+|.|.||...+..++.+|+ +|+..|++..
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~  204 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE  204 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence            3399999999999999999999997 6778887653

>PRK07904 short chain dehydrogenase; Provisional

Probab=87.70  E-value=0.82  Score=37.49  Aligned_cols=37  Identities=16%  Similarity=0.292  Sum_probs=31.4

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccC-CCEEEEEcCCCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWAS  188 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~f-g~~V~~~~~~~~~  188 (210)
                      .++++.|.| .|.||+++|+.+..- |++|+.++|+..+
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~   45 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDP   45 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcch
Confidence            467899998 789999999998877 4999999987653

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=87.69  E-value=0.71  Score=42.87  Aligned_cols=38  Identities=26%  Similarity=0.400  Sum_probs=33.1

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..-.|+++.|.| .|.||+.+++.|...|++|++++|..
T Consensus        76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~  114 (576)
T PLN03209         76 DTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA  114 (576)
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            345688999999 59999999999999999999998864

>PRK07877 hypothetical protein; Provisional

Probab=87.68  E-value=0.46  Score=45.34  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=34.8

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCC--EEEEEcCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRS  185 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~--~V~~~~~~  185 (210)
                      |.......|++++|+|+|+| +|..+|..|..-|.  +++.+|.-
T Consensus        97 ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D  140 (722)
T PRK07877         97 ITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFD  140 (722)
T ss_pred             CCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCC
Confidence            33345678999999999999 99999999998884  78888863

>PRK10637 cysG siroheme synthase; Provisional

Probab=87.66  E-value=0.69  Score=41.79  Aligned_cols=42  Identities=14%  Similarity=0.240  Sum_probs=37.0

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~  189 (210)
                      .-+|+|++|.|||-|.++..=++.|..+|++|..+++...++
T Consensus         7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~   48 (457)
T PRK10637          7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQ   48 (457)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHH
Confidence            357999999999999999999999999999999998865443

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=87.59  E-value=0.83  Score=40.69  Aligned_cols=39  Identities=36%  Similarity=0.501  Sum_probs=34.4

Q ss_pred             ccccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...++||++.|.|- |.||+++|+.+..-|++|+..+|+.
T Consensus       173 a~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~  212 (406)
T PRK07424        173 ALSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNS  212 (406)
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34678999999994 8999999999999999999998764

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=87.59  E-value=4.5  Score=35.12  Aligned_cols=93  Identities=16%  Similarity=0.092  Sum_probs=56.6

Q ss_pred             HHHHhcCCCceEEEEccccCC------ccchh-HHhhCCcEEEecCCCCCCCc-hhHHHHHHHHHHHHHhhHHHHHHHHH
Q 028302           68 SNCISRANQMKLIMQFGVGLE------GVDIN-AATRCGIKVARIPGDVTGNA-ASCAELTIYLMLGLLRKQNEMRMAIE  139 (210)
Q Consensus        68 ~~~l~~~p~Lk~i~~~~aG~d------~id~~-~~~~~gi~v~~~~~~~~~~a-~~vAE~~l~~~L~~~R~~~~~~~~~~  139 (210)
                      ..+++++.++-.+-....|++      +-.+. .+...+|+|.|..+. . |. +..++     ++.+.+.+        
T Consensus        99 arvls~~~D~iv~R~~~~g~~~~~~~~~~~~~~~a~~s~vPVINa~~~-~-HPtQaLaD-----l~Ti~e~~--------  163 (335)
T PRK04523         99 ARVLSRYVDLIGVRAFPKFVDWSKDRQDQVLNSFAKYSTVPVINMETI-T-HPCQELAH-----ALALQEHF--------  163 (335)
T ss_pred             HHHHHHhCcEEEEeCCccccccccchhHHHHHHHHHhCCCCEEECCCC-C-ChHHHHHH-----HHHHHHHh--------
Confidence            445666655444444455554      11222 234458999998654 2 32 23333     22222221        


Q ss_pred             hCCCCCCccccc-ccCeEEEEecC-------hHHHHHHHHhccCCCEEEEEcC
Q 028302          140 QKKLGVPTGETL-LGKTVFILGFG-------NIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       140 ~~~w~~~~~~~l-~~~tvGIiG~G-------~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                              + .+ .|++|+|++.|       ++.+..+..+..|||+|....|
T Consensus       164 --------g-~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P  207 (335)
T PRK04523        164 --------G-TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCP  207 (335)
T ss_pred             --------C-CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECC
Confidence                    2 36 79999887754       6788888889999999999988

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=87.58  E-value=0.81  Score=36.97  Aligned_cols=37  Identities=30%  Similarity=0.495  Sum_probs=33.2

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++.+|++.|.|- |.||+.+++.+..-|.+|+..+++.
T Consensus         5 ~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~   42 (252)
T PRK08220          5 DFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF   42 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence            478899999995 7899999999999999999998865

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=87.56  E-value=0.44  Score=39.14  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=32.8

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..-+.|+|+|.|-.|.-+|+.+..-|.+|..+|++.
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~   44 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE   44 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence            445789999999999999999999999999999875

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=87.54  E-value=0.7  Score=39.55  Aligned_cols=35  Identities=31%  Similarity=0.439  Sum_probs=31.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~  186 (210)
                      .|++|.|.|.|.+|+..++.++.+|.+ |++.+++.
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~  195 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS  195 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence            579999999999999999999999997 67787654

>PRK06179 short chain dehydrogenase; Provisional

Probab=87.52  E-value=0.75  Score=37.74  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=31.3

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~   38 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNP   38 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            357899999 79999999999999999999999874

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=87.48  E-value=0.88  Score=38.54  Aligned_cols=38  Identities=32%  Similarity=0.438  Sum_probs=34.7

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ....|+++.|+|.|..+++++--|+..|+ +|..++|+.
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~  160 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTR  160 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            45689999999999999999999999996 799999975

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=87.47  E-value=0.79  Score=38.81  Aligned_cols=35  Identities=23%  Similarity=0.309  Sum_probs=31.5

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|.+|.|.| .|.+|+.+++.++.+|++|++.+++.
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~  173 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD  173 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            589999999 59999999999999999999887653

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.41  E-value=0.72  Score=39.74  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=31.7

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      =.|.++.|+|.|.||-..-.-+|+||+ +|+..|-..
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~  204 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA  204 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH
Confidence            458999999999999999999999999 688887654

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.30  E-value=0.91  Score=36.64  Aligned_cols=34  Identities=18%  Similarity=0.417  Sum_probs=30.0

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      +.++++.|.| .|.||+++|+++...|++|+...+
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~   37 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH   37 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence            5689999999 889999999999999999987544

>PRK12831 putative oxidoreductase; Provisional

Probab=87.25  E-value=0.8  Score=41.41  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=32.7

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..|++|.|||-|++|-.+|+.+..+|.+|..+.+..
T Consensus       279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            578999999999999999999999999998887644

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=87.18  E-value=0.95  Score=36.29  Aligned_cols=37  Identities=27%  Similarity=0.397  Sum_probs=32.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +++++++.|.| .|.||+++++.+..-|..|...+++.
T Consensus         3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~   40 (245)
T PRK12936          3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRV   40 (245)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence            46789999999 79999999999999999998887653

>PLN02827 Alcohol dehydrogenase-like

Probab=87.15  E-value=0.83  Score=39.94  Aligned_cols=36  Identities=28%  Similarity=0.472  Sum_probs=31.4

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~  186 (210)
                      -.|.+|.|+|.|.||...++.++.+|++ |++.+++.
T Consensus       192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~  228 (378)
T PLN02827        192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINP  228 (378)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence            3589999999999999999999999995 88887543

>PRK12827 short chain dehydrogenase; Provisional

Probab=87.12  E-value=0.99  Score=36.21  Aligned_cols=36  Identities=31%  Similarity=0.456  Sum_probs=31.9

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.++++.|.| .|.||+.+|+.+...|.+|+..++.
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~   39 (249)
T PRK12827          3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIH   39 (249)
T ss_pred             CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCc
Confidence            36789999999 7999999999999999999997764

>PRK07454 short chain dehydrogenase; Provisional

Probab=87.11  E-value=0.9  Score=36.54  Aligned_cols=36  Identities=22%  Similarity=0.165  Sum_probs=32.0

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+|++.|.| .|.||+.+++.|..-|++|+..+|+.+
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~   41 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQD   41 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468999999 599999999999999999999998754

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=86.95  E-value=0.82  Score=38.42  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=31.4

Q ss_pred             ccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+++|.|+|. |.+|+.+++.++.+|++|+..+++.
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~  181 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKA  181 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCH
Confidence            3689999998 9999999999999999999887654

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=86.94  E-value=4  Score=37.82  Aligned_cols=163  Identities=21%  Similarity=0.199  Sum_probs=87.8

Q ss_pred             CCCcceEEEeCCCCCCchhhHHHHhhcCCCeEEe-cCCCC--ChhhhcCCceEEEEcCCCCCHHHHhcCC-CceEEEEcc
Q 028302            9 DKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPIS--DVPDVIANYHLCVVKTMRLDSNCISRAN-QMKLIMQFG   84 (210)
Q Consensus         9 ~~~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~--~~~~~~~~adv~i~~~~~~~~~~l~~~p-~Lk~i~~~~   84 (210)
                      ..+.+++++.+.... ....+++..+ .++.... ..|.+  ..-..+.+  +-+.+... -.+++++.. ..-+|..++
T Consensus       113 ~~~~~r~lIiGAG~a-g~~l~r~~~~-~~~~~pV~fiDdd~~~~g~~i~G--v~V~g~~~-i~~~v~~~~~~~iiiAips  187 (588)
T COG1086         113 KDNRIRLLIIGAGSA-GDLLLRALRR-DPEYTPVAFLDDDPDLTGMKIRG--VPVLGRIE-IERVVEELGIQLILIAIPS  187 (588)
T ss_pred             ccCCCceEEEcCchH-HHHHHHHHHh-CCCcceEEEECCChhhcCCEEec--eeeechhH-HHHHHHHcCCceEEEecCC
Confidence            345678888887643 2344444443 3332221 22222  11122222  22222223 455666543 544566666


Q ss_pred             ccCCcc--chhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCC--CCcccccccCeEEEEe
Q 028302           85 VGLEGV--DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPTGETLLGKTVFILG  160 (210)
Q Consensus        85 aG~d~i--d~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~--~~~~~~l~~~tvGIiG  160 (210)
                      +.-+..  -+..+.+.|+.|-..|..     ..+.+     ...-+|++.--+-.-|+..-.  ......+.||||.|-|
T Consensus       188 ~~~~~~~~i~~~l~~~~~~v~~lP~~-----~~l~~-----~~~~lreI~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTG  257 (588)
T COG1086         188 ASQEERRRILLRLARTGIAVRILPQL-----TDLKD-----LNGQLREIEIEDLLGRPPVALDTELIGAMLTGKTVLVTG  257 (588)
T ss_pred             CCHHHHHHHHHHHHhcCCcEEecCcH-----HHHHH-----hccccccCCHHHHhCCCCCCCCHHHHHhHcCCCEEEEeC
Confidence            654321  245577788888877664     33333     222244442222111111100  1134679999999999


Q ss_pred             -cChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          161 -FGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       161 -~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                       -|+||+++.+....++. +++.+|++.
T Consensus       258 agGSiGsel~~qil~~~p~~i~l~~~~E  285 (588)
T COG1086         258 GGGSIGSELCRQILKFNPKEIILFSRDE  285 (588)
T ss_pred             CCCcHHHHHHHHHHhcCCCEEEEecCch
Confidence             78999999999999999 588888865

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=86.93  E-value=0.82  Score=38.38  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=31.2

Q ss_pred             ccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|.|. |.+|+.+++.++.+|++|+..+.++
T Consensus       146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~  181 (324)
T cd08288         146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRP  181 (324)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999997 9999999999999999999886544

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=86.91  E-value=0.91  Score=41.06  Aligned_cols=37  Identities=30%  Similarity=0.410  Sum_probs=33.7

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -.+++|.|||-|.+|-..|..|+..|.+|..|++.+.
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~  175 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE  175 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            4789999999999999999999999999999987653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.88  E-value=0.95  Score=36.82  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=31.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.+|++.|.| .|.||+++|+.+...|.+|+..+++
T Consensus         4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~   40 (255)
T PRK06463          4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNS   40 (255)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999 6999999999999999999887554

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=86.88  E-value=6.5  Score=34.47  Aligned_cols=37  Identities=14%  Similarity=0.137  Sum_probs=29.8

Q ss_pred             ccccCeEEEEecC--------hHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFG--------NIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G--------~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|.|+||+|+|.|        ++.+..+..+..|||+|....|..
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~  211 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEG  211 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCc
Confidence            4889999999854        344677778889999999998853

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=86.87  E-value=0.92  Score=38.39  Aligned_cols=35  Identities=37%  Similarity=0.258  Sum_probs=30.6

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+|++.|.| .|-||+.++++|..-|.+|++.+|..
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~   39 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDP   39 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            378999999 69999999999999999998876654

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=86.85  E-value=0.89  Score=38.73  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=31.8

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+++|.|.|.|.+|+.+++.++.+|++|+..+++.
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~  199 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDD  199 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            57899999999999999999999999999887653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK07340 ornithine cyclodeaminase; Validated

Probab=86.84  E-value=0.98  Score=38.55  Aligned_cols=36  Identities=11%  Similarity=0.142  Sum_probs=30.6

Q ss_pred             cccCeEEEEecChHHHHHHHHhc-cCCC-EEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~-~fg~-~V~~~~~~~  186 (210)
                      ...++++|+|.|.+|+..++.+. .++. +|..|+|+.
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~  160 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTA  160 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCH
Confidence            45789999999999999999986 4665 699999974

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=86.78  E-value=0.99  Score=38.31  Aligned_cols=37  Identities=30%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.| .|.||+++|+.|..-|.+|+..+|+.
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~   40 (322)
T PRK07453          3 QDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNL   40 (322)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            46789999999 68999999999999999999998864

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=86.73  E-value=0.58  Score=46.35  Aligned_cols=43  Identities=30%  Similarity=0.483  Sum_probs=38.0

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      |.......|+..+|.|+|+|.+|.++|+-+...|. +|..+|..
T Consensus        14 ~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d   57 (1008)
T TIGR01408        14 LGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTE   57 (1008)
T ss_pred             cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            66555678999999999999999999999999999 68888875

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PRK12744 short chain dehydrogenase; Provisional

Probab=86.68  E-value=1.1  Score=36.59  Aligned_cols=36  Identities=36%  Similarity=0.502  Sum_probs=31.1

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.++++.|.| .|.||+++|+.+...|++|+..+++
T Consensus         5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~   41 (257)
T PRK12744          5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYN   41 (257)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecC
Confidence            47789999999 8899999999999999997776543

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=86.67  E-value=0.92  Score=36.56  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      .+.++++.|.| .|.||+.+|+++...|++|+...+
T Consensus         3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~   38 (247)
T PRK12935          3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYN   38 (247)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence            36789999999 899999999999999999987654

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=86.67  E-value=1.2  Score=42.18  Aligned_cols=40  Identities=30%  Similarity=0.498  Sum_probs=35.8

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ....+.+|++.|.| .|.||+++|+.|..-|++|+..+++.
T Consensus       408 ~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~  448 (676)
T TIGR02632       408 KEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNL  448 (676)
T ss_pred             CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            44678999999999 58999999999999999999999864

>PRK07109 short chain dehydrogenase; Provisional

Probab=86.65  E-value=1  Score=38.79  Aligned_cols=38  Identities=21%  Similarity=0.294  Sum_probs=33.9

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.++++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus         4 ~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~   42 (334)
T PRK07109          4 KPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGE   42 (334)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            457889999999 59999999999999999999999864

>PLN02214 cinnamoyl-CoA reductase

Probab=86.63  E-value=0.98  Score=38.89  Aligned_cols=38  Identities=32%  Similarity=0.295  Sum_probs=33.5

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.+++|.|.|- |-||+.+++.|..-|.+|++.+|...
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~   45 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPD   45 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCch
Confidence            467899999996 99999999999999999999988643

>cd08293 PTGR2 Prostaglandin reductase

Probab=86.63  E-value=0.93  Score=38.57  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=30.7

Q ss_pred             cCeEEEEec-ChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          153 GKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~-G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      |.+|.|.|. |.+|+..++.++.+|+ +|++.+++.
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~  190 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSD  190 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence            489999997 9999999999999999 799987654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=86.61  E-value=0.95  Score=40.03  Aligned_cols=37  Identities=32%  Similarity=0.504  Sum_probs=33.2

Q ss_pred             cccCeEEEEecC----------hHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G----------~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      |.||||||+|+-          +-...++++|+..|++|++|||-..
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~  354 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAM  354 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhh
Confidence            889999999984          6678999999999999999999654

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=86.60  E-value=2.3  Score=39.54  Aligned_cols=68  Identities=19%  Similarity=0.261  Sum_probs=54.6

Q ss_pred             hCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhcc--
Q 028302           97 RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP--  174 (210)
Q Consensus        97 ~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~--  174 (210)
                      +..+++.|-      .-+-+|=-+++.+|+..|-.                +..|.+.+|.++|.|+-|..+|+.+..  
T Consensus       287 r~~i~~FnD------DiQGTaaV~lAgll~A~r~~----------------g~~l~d~riv~~GAGsAgigia~ll~~~~  344 (581)
T PLN03129        287 RTTHLCFND------DIQGTAAVALAGLLAALRAT----------------GGDLADQRILFAGAGEAGTGIAELIALAM  344 (581)
T ss_pred             ccCCCEecc------ccchHHHHHHHHHHHHHHHh----------------CCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence            346777663      23667888899999988844                678999999999999999999999886  


Q ss_pred             ---CCC-------EEEEEcCCC
Q 028302          175 ---FGV-------KIIATKRSW  186 (210)
Q Consensus       175 ---fg~-------~V~~~~~~~  186 (210)
                         .|+       +++.+|+.+
T Consensus       345 ~~~~Gls~eeA~~~i~~vD~~G  366 (581)
T PLN03129        345 SRQTGISEEEARKRIWLVDSKG  366 (581)
T ss_pred             HhhcCCChhhhcCcEEEEcCCC
Confidence               466       788888864

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=86.54  E-value=0.92  Score=41.00  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=31.5

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +++|.|||-|.+|-++|..++.+|.+|..+++..
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~  216 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP  216 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            6899999999999999999999999999998754

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=86.53  E-value=0.99  Score=38.52  Aligned_cols=33  Identities=36%  Similarity=0.540  Sum_probs=30.9

Q ss_pred             cccccCeEEEEec---ChHHHHHHHHhccCCCEEEE
Q 028302          149 ETLLGKTVFILGF---GNIGVELAKRLRPFGVKIIA  181 (210)
Q Consensus       149 ~~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~  181 (210)
                      .+|.||++.|-|-   ..||.++|+.+..-|++|+.
T Consensus         5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~   40 (303)
T PLN02730          5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV   40 (303)
T ss_pred             cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence            4599999999999   77999999999999999988

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=86.49  E-value=2.2  Score=38.52  Aligned_cols=38  Identities=29%  Similarity=0.373  Sum_probs=34.3

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .-.+++|.|||.|..|-..|..|+..|.+|..|++.+.
T Consensus       140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~  177 (471)
T PRK12810        140 KRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR  177 (471)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            35789999999999999999999999999999998654

>PLN02427 UDP-apiose/xylose synthase

Probab=86.48  E-value=1  Score=39.34  Aligned_cols=39  Identities=26%  Similarity=0.313  Sum_probs=33.7

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccC-CCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~f-g~~V~~~~~~~  186 (210)
                      ++.+..++|.|.| .|-||+.+++.|..- |.+|+++|++.
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~   49 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN   49 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence            5667788999999 699999999999877 58999999753

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.45  E-value=1.3  Score=39.54  Aligned_cols=38  Identities=24%  Similarity=0.368  Sum_probs=34.0

Q ss_pred             cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.|+++.|.|- |.||+.+|+.+...|++|+..++..
T Consensus       206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~  244 (450)
T PRK08261        206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPA  244 (450)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4578999999996 9999999999999999999998743

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=86.40  E-value=0.71  Score=39.66  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=30.5

Q ss_pred             ccCeEEEEecChHHHHHHHHhcc-CC-CEEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~-fg-~~V~~~~~~~~  187 (210)
                      .|.+|.|+|.|.||...++.++. +| .+|++++++..
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~  200 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQE  200 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHh
Confidence            48899999999999999998885 64 68999987653

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=86.38  E-value=0.96  Score=39.87  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=34.6

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .....+++|.|.| .|.||+.+++.|..-|.+|++++|..
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            4567889999999 59999999999998899999999864

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=86.33  E-value=1  Score=35.97  Aligned_cols=37  Identities=30%  Similarity=0.438  Sum_probs=31.3

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +.++++.|.| .|.||+.+++.+..-|.+|+...++..
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~   40 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSE   40 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCch
Confidence            5678999999 699999999999988999977666543

>PRK12831 putative oxidoreductase; Provisional

Probab=86.32  E-value=2.5  Score=38.22  Aligned_cols=38  Identities=26%  Similarity=0.355  Sum_probs=34.2

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..-.+++|.|||-|..|-..|..|+..|.+|..+++..
T Consensus       136 ~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~  173 (464)
T PRK12831        136 EEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH  173 (464)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            34579999999999999999999999999999998754

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=86.24  E-value=0.98  Score=38.57  Aligned_cols=36  Identities=31%  Similarity=0.350  Sum_probs=30.8

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCC--CEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFG--VKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg--~~V~~~~~~~  186 (210)
                      +.|+++.|.| .|.||+.+++.|..-|  .+|+.++|..
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~   40 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDE   40 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCCh
Confidence            5689999999 6999999999998765  7899998754

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN00106 malate dehydrogenase

Probab=86.20  E-value=1.2  Score=38.39  Aligned_cols=35  Identities=26%  Similarity=0.336  Sum_probs=29.3

Q ss_pred             ccCeEEEEec-ChHHHHHHHHhc--cCCCEEEEEcCCC
Q 028302          152 LGKTVFILGF-GNIGVELAKRLR--PFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~-G~IG~~vA~~~~--~fg~~V~~~~~~~  186 (210)
                      ..++|+|+|. |+||..+|-.+.  .+.-++..+|...
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            3469999999 999999999988  4545899999755

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=86.18  E-value=1  Score=37.89  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=31.4

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|.+|.|.| .|.+|+.+++.++.+|++|++.+++.
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~  178 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSD  178 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            589999999 69999999999999999999887653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=86.04  E-value=1  Score=42.56  Aligned_cols=37  Identities=27%  Similarity=0.244  Sum_probs=33.8

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -.+++|.|||.|..|-..|..|+..|.+|..+++...
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~  227 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ  227 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4689999999999999999999999999999998654

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.95  E-value=1.2  Score=37.74  Aligned_cols=39  Identities=21%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..++..
T Consensus         7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~   46 (306)
T PRK07792          7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVAS   46 (306)
T ss_pred             CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCc
Confidence            3568999999999 57899999999999999999998753

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=85.95  E-value=1.1  Score=38.41  Aligned_cols=36  Identities=36%  Similarity=0.479  Sum_probs=31.9

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      -.|++|.|.|.|.+|+..++.++.+|+ +|++.+++.
T Consensus       171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~  207 (351)
T cd08233         171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSE  207 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            357899999999999999999999999 788887643

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK06128 oxidoreductase; Provisional

Probab=85.87  E-value=1.1  Score=37.64  Aligned_cols=36  Identities=25%  Similarity=0.267  Sum_probs=31.7

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.||++.|.| .|.||+++|+.+..-|++|+...+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            47899999999 5999999999999999999876553

>PLN02602 lactate dehydrogenase

Probab=85.83  E-value=1.3  Score=38.68  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=28.2

Q ss_pred             CeEEEEecChHHHHHHHHhc--cCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLR--PFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~--~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|+||..+|-.+.  ++.-++..+|...
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~   72 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP   72 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            69999999999999999877  4444799999754

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=85.80  E-value=1.2  Score=40.98  Aligned_cols=39  Identities=31%  Similarity=0.458  Sum_probs=33.8

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ....+||+|.|||.|+-|..+|.-+....-+|+..-|++
T Consensus       178 ~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~  216 (531)
T PF00743_consen  178 PEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG  216 (531)
T ss_dssp             GGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred             hhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence            467899999999999999999999999888988877764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=85.76  E-value=2  Score=38.64  Aligned_cols=39  Identities=21%  Similarity=0.237  Sum_probs=34.8

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ....+++|.|||-|..|-..|..|+..|.+|..+++...
T Consensus       129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~  167 (449)
T TIGR01316       129 APSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK  167 (449)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            345789999999999999999999999999999998654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02572 UDP-sulfoquinovose synthase

Probab=85.61  E-value=1.1  Score=40.29  Aligned_cols=38  Identities=21%  Similarity=0.276  Sum_probs=34.1

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      ....+.+++|.|.| .|-||+.+++.|..-|.+|+++|+
T Consensus        41 ~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~   79 (442)
T PLN02572         41 SSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN   79 (442)
T ss_pred             CCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence            34678899999999 699999999999999999999875

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=85.60  E-value=1.4  Score=39.15  Aligned_cols=40  Identities=30%  Similarity=0.407  Sum_probs=35.4

Q ss_pred             cccccCeEEEEec----------ChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          149 ETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       149 ~~l~~~tvGIiG~----------G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ..+.+++|+|+|+          .+-...+++.|...|++|.+|||...+
T Consensus       309 ~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~  358 (411)
T TIGR03026       309 GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPE  358 (411)
T ss_pred             hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCCh
Confidence            3689999999998          568899999999999999999997543

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=85.60  E-value=1.1  Score=39.33  Aligned_cols=35  Identities=29%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++++.|||-|.+|-++|..|+.+|.+|..+.+..
T Consensus       143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  177 (396)
T PRK09754        143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELAA  177 (396)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            36899999999999999999999999999988754

>PRK07791 short chain dehydrogenase; Provisional

Probab=85.51  E-value=1.2  Score=37.27  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.||++.|.| .+.||+++|+.+...|++|+..+++.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~   40 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGV   40 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCc
Confidence            6789999999 67999999999999999999987653

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=85.49  E-value=1.1  Score=40.17  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=31.9

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++++.|||-|.+|-++|..++.+|.+|..+++..
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~  208 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD  208 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            6899999999999999999999999999998764

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=85.45  E-value=1.1  Score=40.04  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=32.0

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++++.|||-|.||-++|..++.+|.+|..+++..
T Consensus       147 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  181 (438)
T PRK13512        147 QVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD  181 (438)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence            35899999999999999999999999999998764

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=85.42  E-value=5.8  Score=34.07  Aligned_cols=37  Identities=16%  Similarity=0.172  Sum_probs=33.3

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.|+||++||- +++....+..+..|||+|....|..
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~  187 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIA  187 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCC
Confidence            488999999996 7899999999999999999999854

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=85.40  E-value=1.2  Score=38.88  Aligned_cols=36  Identities=25%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      -.|.+|.|.|.|.+|..+++.++.+|. +|++.+++.
T Consensus       189 ~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~  225 (373)
T cd08299         189 TPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINK  225 (373)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            458899999999999999999999999 799988653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=85.37  E-value=6.6  Score=36.39  Aligned_cols=91  Identities=11%  Similarity=0.129  Sum_probs=63.4

Q ss_pred             cCCCceEEEEccccCCc-cchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCccccc
Q 028302           73 RANQMKLIMQFGVGLEG-VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETL  151 (210)
Q Consensus        73 ~~p~Lk~i~~~~aG~d~-id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l  151 (210)
                      ..|+ -+||.==-+.++ +.+..-.+..+++.|-      .-+-+|-.+++.+|+..|-.                +..|
T Consensus       239 ~~P~-~~Iq~EDf~~~naf~iL~kyr~~i~~FnD------DiQGTaaV~lAgll~Alr~~----------------g~~l  295 (559)
T PTZ00317        239 RWPN-AVVQFEDFSNNHCFDLLERYQNKYRCFND------DIQGTGAVIAAGFLNALKLS----------------GVPP  295 (559)
T ss_pred             hCCC-eEEehhhcCCccHHHHHHHhccCCCEecc------cchhHHHHHHHHHHHHHHHh----------------CCCh
Confidence            3566 255543333322 3332223345777663      23667888999999999844                6789


Q ss_pred             ccCeEEEEecChHHHHHHHHhcc----CCC-------EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRP----FGV-------KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~----fg~-------~V~~~~~~~  186 (210)
                      .+.++.++|.|+-|-.+|+.+..    -|.       +++.+|+.+
T Consensus       296 ~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~G  341 (559)
T PTZ00317        296 EEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKG  341 (559)
T ss_pred             hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence            99999999999999999999863    577       899999864

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=85.36  E-value=1.2  Score=38.72  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=31.3

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ..|.+|.|.|.|.+|+.+++.++++|. +|++.++.
T Consensus       175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~  210 (375)
T cd08282         175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHV  210 (375)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            358999999999999999999999998 79888764

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=85.32  E-value=2.2  Score=38.63  Aligned_cols=43  Identities=23%  Similarity=0.277  Sum_probs=38.5

Q ss_pred             cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~  189 (210)
                      .....++++|+|||-|.-|-+.|..|...|-.|+.|.+.++..
T Consensus       117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G  159 (457)
T COG0493         117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG  159 (457)
T ss_pred             CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence            4457788999999999999999999999999999999987654

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=85.23  E-value=1.3  Score=35.60  Aligned_cols=33  Identities=27%  Similarity=0.590  Sum_probs=29.3

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEc
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATK  183 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~  183 (210)
                      +.+|++.|.| .|.||+.+|+.+..-|.+|+...
T Consensus         1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~   34 (246)
T PRK12938          1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGC   34 (246)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEc
Confidence            4679999999 69999999999999999988854

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=84.99  E-value=5.7  Score=34.47  Aligned_cols=36  Identities=17%  Similarity=0.157  Sum_probs=31.6

Q ss_pred             ccccCeEEEEecC--hHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG~G--~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.|++|++||=+  ++.+..+..+..||++|....|.
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~  190 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPK  190 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCc
Confidence            4889999999975  67888888999999999999874

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=84.95  E-value=1.2  Score=32.30  Aligned_cols=34  Identities=18%  Similarity=0.410  Sum_probs=29.7

Q ss_pred             CeEEEEe----cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILG----FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG----~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      |++.|||    -++.|..+.+.++..|.+|+.++++..
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~   38 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGG   38 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCS
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCce
Confidence            6899999    789999999999999999999998764

>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE

Probab=84.94  E-value=4.9  Score=36.27  Aligned_cols=35  Identities=31%  Similarity=0.390  Sum_probs=30.6

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEc
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~  183 (210)
                      ..|.||++.|.+-+...-.+++.++.+||+|.+..
T Consensus       322 ~~L~Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~  356 (456)
T TIGR01283       322 ERLKGKKAAIYTGGVKSWSLVSALQDLGMEVVATG  356 (456)
T ss_pred             HHcCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEe
Confidence            56899999998877888899999999999998874

This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.

>PRK12937 short chain dehydrogenase; Provisional

Probab=84.90  E-value=1.5  Score=35.22  Aligned_cols=36  Identities=28%  Similarity=0.404  Sum_probs=31.4

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.++++.|.| .|.||+.+|+.+..-|.+|+...++
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~   38 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG   38 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            36789999999 6999999999999999998877654

>PRK06370 mercuric reductase; Validated

Probab=84.86  E-value=1.2  Score=40.01  Aligned_cols=34  Identities=32%  Similarity=0.566  Sum_probs=31.7

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++++.|||-|.+|-++|..++.+|.+|..+++..
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~  204 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP  204 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            6899999999999999999999999999998754

>PTZ00058 glutathione reductase; Provisional

Probab=84.84  E-value=1.1  Score=41.72  Aligned_cols=34  Identities=29%  Similarity=0.329  Sum_probs=31.7

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +++|.|||-|.||-++|..++.+|.+|..+.+..
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~  270 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN  270 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence            7899999999999999999999999999998754

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=84.83  E-value=1.4  Score=37.55  Aligned_cols=34  Identities=29%  Similarity=0.500  Sum_probs=30.9

Q ss_pred             ccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCC
Q 028302          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .|.+|.|.|. |.+|+.+++.++.+|++|++.+++
T Consensus       177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~  211 (350)
T cd08274         177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA  211 (350)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc
Confidence            4799999998 999999999999999999887754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=84.82  E-value=1.3  Score=33.99  Aligned_cols=35  Identities=17%  Similarity=0.326  Sum_probs=31.8

Q ss_pred             ccCeEEEEe--cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG--FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG--~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|+||+++|  .+++...++..+..||+++....|..
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~   37 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEG   37 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence            488999999  48999999999999999999998865

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.81  E-value=1.4  Score=35.98  Aligned_cols=37  Identities=38%  Similarity=0.473  Sum_probs=32.9

Q ss_pred             ccCeEEEEec--ChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          152 LGKTVFILGF--GNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       152 ~~~tvGIiG~--G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ..+.|.|.|+  |.||-++|+.+..-|+.|++..|+..+
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~   44 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEP   44 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccch
Confidence            3578999995  899999999999999999999998654

>PRK06116 glutathione reductase; Validated

Probab=84.80  E-value=1.3  Score=39.70  Aligned_cols=34  Identities=32%  Similarity=0.327  Sum_probs=31.5

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +++|.|||-|.+|-++|..++.+|.+|..+.+..
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  200 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD  200 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            5899999999999999999999999999998754

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=84.70  E-value=1.2  Score=39.88  Aligned_cols=35  Identities=37%  Similarity=0.565  Sum_probs=31.9

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++++.|||-|.+|-++|..++.+|.+|..+.+..
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~  202 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD  202 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            35899999999999999999999999999998754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=84.67  E-value=1.3  Score=40.04  Aligned_cols=38  Identities=24%  Similarity=0.389  Sum_probs=33.9

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ....++|.|||.|..|-..|+.|+.-|.+|+.+.++..
T Consensus         7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~   44 (461)
T PLN02172          7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ   44 (461)
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            35578999999999999999999999999999998654

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=84.61  E-value=1.3  Score=39.78  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=31.2

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+++.|||-|.+|-++|..++.+|.+|..+++.+
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~  205 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP  205 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            4799999999999999999999999999998754

>PLN02206 UDP-glucuronate decarboxylase

Probab=84.56  E-value=1.3  Score=39.93  Aligned_cols=38  Identities=29%  Similarity=0.385  Sum_probs=32.9

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      +-.-++++|.|.| .|-||+.+++.|..-|.+|+++|+.
T Consensus       114 ~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~  152 (442)
T PLN02206        114 GLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNF  152 (442)
T ss_pred             ccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCC
Confidence            3344679999999 7999999999999999999999864

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.55  E-value=5  Score=34.19  Aligned_cols=41  Identities=22%  Similarity=0.281  Sum_probs=36.7

Q ss_pred             cccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCC
Q 028302          147 TGETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..++++|++|.|=|-|+ +|+++|.-+...|+++..||...+
T Consensus        32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~   73 (300)
T KOG1201|consen   32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQ   73 (300)
T ss_pred             chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEecccc
Confidence            45899999999999876 899999999999999999997654

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=84.55  E-value=0.99  Score=39.98  Aligned_cols=36  Identities=17%  Similarity=0.315  Sum_probs=32.8

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ...+|+||+|-.|+.+|.-...-|++|.+|+|+...
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~k   38 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEK   38 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHH
Confidence            457999999999999999999999999999998743

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.52  E-value=1.4  Score=35.53  Aligned_cols=35  Identities=34%  Similarity=0.443  Sum_probs=29.7

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEE-EcCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIA-TKRS  185 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~-~~~~  185 (210)
                      +.++++.|.| .|.||+.+++.+...|.+|+. .+|.
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~   38 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARS   38 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4678999999 689999999999999999876 3454

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=84.47  E-value=3.6  Score=36.90  Aligned_cols=39  Identities=26%  Similarity=0.386  Sum_probs=35.1

Q ss_pred             ccccccCeEEEEec----------ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~----------G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +..+.|++|+|+|+          .+=+..+++.|..-|.+|.+|||..
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v  357 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWV  357 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCC
Confidence            45689999999999          5778999999999999999999973

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=84.43  E-value=1.5  Score=39.01  Aligned_cols=38  Identities=26%  Similarity=0.356  Sum_probs=33.9

Q ss_pred             cccccCeEEEEec-----------------ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-----------------GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-----------------G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++.|+++.|-|-                 |.+|.++|+.+...|++|+++++..
T Consensus       184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~  238 (399)
T PRK05579        184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPV  238 (399)
T ss_pred             cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCc
Confidence            3588999999996                 7899999999999999999998754

>PRK07846 mycothione reductase; Reviewed

Probab=84.39  E-value=1.3  Score=39.72  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=31.6

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+++.|||-|.||-++|..++.+|.+|..+.+..
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~  199 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG  199 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            5799999999999999999999999999998764

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.37  E-value=1.4  Score=37.44  Aligned_cols=36  Identities=36%  Similarity=0.517  Sum_probs=32.6

Q ss_pred             cccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcC
Q 028302          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       149 ~~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      .++.||++.|-|-|   .||+++|+.|..-|++|+..++
T Consensus         4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~   42 (299)
T PRK06300          4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTW   42 (299)
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEec
Confidence            56899999999996   9999999999999999998653

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.31  E-value=1.9  Score=36.45  Aligned_cols=54  Identities=13%  Similarity=0.003  Sum_probs=42.9

Q ss_pred             ccccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEec
Q 028302          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLG  201 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~  201 (210)
                      +.++.||++.|||-| -+|+.+|.+|..-|++|..+....+.  +...++|.++...
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~Av  208 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVGV  208 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEec
Confidence            468999999999998 78999999999889999987754332  2456677776654

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=84.31  E-value=1.2  Score=37.48  Aligned_cols=34  Identities=32%  Similarity=0.522  Sum_probs=30.8

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      -.|.+|.|+|. |.+|+.+++.+++.|.+|++.++
T Consensus       161 ~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~  195 (325)
T cd08264         161 GPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR  195 (325)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH
Confidence            35899999997 99999999999999999988764

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.22  E-value=1.2  Score=40.84  Aligned_cols=38  Identities=26%  Similarity=0.441  Sum_probs=33.2

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .....++|-|||.|--|-..||-|..||++|+.+.-+.
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd   48 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD   48 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence            34567799999999999999999999999999987543

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=84.18  E-value=1.4  Score=37.65  Aligned_cols=35  Identities=34%  Similarity=0.454  Sum_probs=31.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~  186 (210)
                      .|++|.|.|.|.||+.+++.++.+|.+ |+..+++.
T Consensus       166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~  201 (351)
T cd08285         166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRP  201 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            479999999999999999999999994 88887653

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK12747 short chain dehydrogenase; Provisional

Probab=84.14  E-value=1.6  Score=35.33  Aligned_cols=33  Identities=33%  Similarity=0.427  Sum_probs=29.7

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEc
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATK  183 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~  183 (210)
                      +.+|++.|.| .|.||+++|+.+..-|++|+..+
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~   35 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHY   35 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEc
Confidence            4689999999 78999999999999999998864

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=84.08  E-value=1.3  Score=39.83  Aligned_cols=34  Identities=38%  Similarity=0.402  Sum_probs=31.4

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++++.|||-|.||-++|..++.+|.+|..+.+..
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~  199 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE  199 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            5899999999999999999999999999988754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07201 short chain dehydrogenase; Provisional

Probab=84.07  E-value=1.8  Score=40.38  Aligned_cols=37  Identities=30%  Similarity=0.433  Sum_probs=33.7

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.|+++.|.| .|.||+++++.+..-|++|+..+|+.
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~  405 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNG  405 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            67899999999 58899999999999999999999864

>PLN02583 cinnamoyl-CoA reductase

Probab=84.03  E-value=1.5  Score=36.87  Aligned_cols=34  Identities=29%  Similarity=0.392  Sum_probs=30.6

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+++|.|.| .|-||+.+++.|..-|.+|++..|+
T Consensus         5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~   39 (297)
T PLN02583          5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK   39 (297)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence            468999999 6999999999999999999998774

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=84.02  E-value=1.3  Score=37.30  Aligned_cols=34  Identities=24%  Similarity=0.226  Sum_probs=31.1

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ++++.|+|.|..+++++-.|+..|+ +|..++|+.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~  156 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE  156 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4689999999999999999999998 599999975

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=83.99  E-value=0.65  Score=40.18  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.4

Q ss_pred             cCeEEEEecChHHHHHHHHhcc
Q 028302          153 GKTVFILGFGNIGVELAKRLRP  174 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~  174 (210)
                      .-+|+|+|+|.+|+.+++.++.
T Consensus         3 ~v~v~l~G~G~VG~~~~~il~~   24 (333)
T COG0460           3 TVKVGLLGLGTVGSGVLEILAE   24 (333)
T ss_pred             eEEEEEEccCchhHHHHHHHHH
Confidence            3579999999999999998875

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=83.94  E-value=1.3  Score=39.83  Aligned_cols=34  Identities=35%  Similarity=0.518  Sum_probs=31.3

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++|.|||-|.+|-++|..++.+|.+|..+++..
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~  213 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD  213 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence            5799999999999999999999999999998754

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=83.91  E-value=1.5  Score=37.16  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=30.7

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ..|++|.|.|.|.+|+.+++.++.+|+ +|++.++.
T Consensus       166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~  201 (344)
T cd08284         166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPV  201 (344)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCC
Confidence            358999999999999999999999997 78887543

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK08618 ornithine cyclodeaminase; Validated

Probab=83.85  E-value=1.5  Score=37.68  Aligned_cols=35  Identities=14%  Similarity=0.225  Sum_probs=28.6

Q ss_pred             ccCeEEEEecChHHHHHHHHhc-cCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~-~fg~-~V~~~~~~~  186 (210)
                      ..++++|||.|.+|+..++.+. ..++ +|..|||++
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~  162 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTF  162 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCH
Confidence            4789999999999998887654 5676 688899874

>PRK13984 putative oxidoreductase; Provisional

Probab=83.80  E-value=1.6  Score=40.73  Aligned_cols=37  Identities=24%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -.+++|.|||.|..|...|..|+..|.+|..+++...
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~  317 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK  317 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4689999999999999999999999999999987543

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=83.79  E-value=1.5  Score=39.57  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=31.1

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +++|.|||-|.||-++|..+..+|.+|..+++..
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~  207 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD  207 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            6899999999999999999999999999987643

>PRK09134 short chain dehydrogenase; Provisional

Probab=83.75  E-value=2  Score=34.95  Aligned_cols=37  Identities=16%  Similarity=0.260  Sum_probs=31.9

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ....++++.|.| .|.||+.+++.+...|++|+..+++
T Consensus         5 ~~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~   42 (258)
T PRK09134          5 SMAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNR   42 (258)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            456789999999 6899999999999999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		4e-12
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		7e-12
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		8e-11
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		3e-08
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		1e-07
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		1e-07
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		7e-07
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		7e-07
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		8e-07
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		9e-07
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		1e-06
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		6e-06
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		6e-06
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		7e-06
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		7e-06
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		9e-06
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		1e-05
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		1e-05
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		1e-05
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		5e-05
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		8e-05
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		1e-04
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		3e-04
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		3e-04
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		3e-04
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		3e-04
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		3e-04
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		4e-04
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		7e-04

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 11/128 (8%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 71  LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 127
Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct: 128 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 184
Query: 173 RPFGVKII 180
           + FG+K I
Sbjct: 185 QSFGMKTI 192

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 15/148 (10%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           + V  T ++    +  A ++K+I     G + +D+  AT+ GI V ++ G ++    + A
Sbjct: 46  IIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLS---EAVA 102
Query: 118 ELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTG----ETLLGKTVFILGFGNIGVELA 169
           E T+ L++ L+RK       +R    +    + TG    E+L GK V ILG G IG  +A
Sbjct: 103 EFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIA 162
Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQSS 197
           +RL PFGVK+      W+ H +V+ +  
Sbjct: 163 RRLIPFGVKLY----YWSRHRKVNVEKE 186

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 10/131 (7%)
Query: 55  NYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNA 113
           NY + VV++  ++  + I +  ++K+I + G+GL+ +D   A +  IKV   PG  T   
Sbjct: 46  NYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTD-- 103
Query: 114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAK 170
            S  ELTI LM+   RK   M  ++   K G+     G  L GKT+ I+GFG IG ++  
Sbjct: 104 -SAVELTIGLMIAAARK---MYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGI 159
Query: 171 RLRPFGVKIIA 181
                G+K++A
Sbjct: 160 IANAMGMKVLA 170

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           +K I  + +G + +D++A    GIKV   P  VT    + AE+ + L+LG  R+  E   
Sbjct: 68  IKCISTYSIGFDHIDLDACKARGIKVGNAPHGVT---VATAEIAMLLLLGSARRAGEGEK 124
Query: 137 AIEQKKL--GVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--IATKRSWASH 189
            I  +      P    GE L  KT+ I GFG+IG  LAKR + F + I    T R+ +S 
Sbjct: 125 MIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA-SSS 183
Query: 190 SQVSCQSS 197
            + S Q++
Sbjct: 184 DEASYQAT 191

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V     +D+  ++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S A
Sbjct: 47  LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAA 103
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 175
           E  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  F
Sbjct: 104 EHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF 163
Query: 176 GVKIIA 181
           G  ++A
Sbjct: 164 GAYVVA 169

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V     +D+  ++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S A
Sbjct: 48  LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAA 104
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 175
           E  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  F
Sbjct: 105 EHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF 164
Query: 176 GVKIIA 181
           G  ++A
Sbjct: 165 GAYVVA 170

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           + +I   GVG + VD+  A R  I V   PG +   A   A+L I L L +LR+  +   
Sbjct: 94  LGIIAINGVGTDKVDLARARRRNIDVTTTPGVL---ADDVADLGIALXLAVLRRVGDGDR 150
Query: 137 AIEQKKLG----VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS------W 186
            + + +      +P G +  GK + +LG G IG  LA R   FG  +    RS      W
Sbjct: 151 LVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDW 210
Query: 187 ASH 189
            +H
Sbjct: 211 IAH 213

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
           T+ L    + +   +++I++ G G + VDI AA   GI V  IP   +      A+ TI 
Sbjct: 56  TITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIP---SAAVEETADSTIC 112
Query: 123 LMLGLLRKQNEMRMA---------IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLR 173
            +L L R+   +  A         +EQ +        + G+T+ ++GFG  G  +A R +
Sbjct: 113 HILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAK 172
Query: 174 PFGVKII 180
            FG  +I
Sbjct: 173 AFGFSVI 179

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 14/110 (12%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           +K+I    VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E   
Sbjct: 77  LKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTD---TTAELAVSLLLTTCRRLPE--- 130
Query: 137 AIEQKKLGVPT--------GETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
           AIE+ K G  T        G  L   TV I+G G IG  +A+RL+PFGV+
Sbjct: 131 AIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQ 180

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 58  LCVVKTMRLDSNCISRANQ-MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASC 116
           L V  T  + +  I +    +K I    VG + +D  AA   GIKV   P DV  +A  C
Sbjct: 75  LFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTP-DVLSDA--C 131
Query: 117 AELTIYLMLGLLRKQNEMRMAIEQKKL--GVPT---GETLLGKTVFILGFGNIGVELAKR 171
           AE+   L+L   R+  E    +         PT   G  L G+ + I G G IG  +A R
Sbjct: 132 AEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATR 191
Query: 172 LRPFGVKIIATKRSWASHS 190
            R FG+ I    R+  SH+
Sbjct: 192 ARGFGLAIHYHNRTRLSHA 210

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 14/110 (12%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           +K+I    VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E   
Sbjct: 75  LKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTD---TTAELAVSLLLTTCRRLPE--- 128
Query: 137 AIEQKKLGVPT--------GETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
           AIE+ K G  T        G  L   TV I+G G IG  +A+RL+PFGV+
Sbjct: 129 AIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQ 178

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 56  YHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAA 114
           +H   +   R+D     +A ++KL++  GVG + +D++   + G K++ +  +VTG N  
Sbjct: 70  FHPAYITKERID-----KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVL--EVTGSNVV 122
Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT----GETLLGKTVFILGFGNIGVELAK 170
           S AE  +  ML L+R        I      V         + GKT+  +G G IG  + +
Sbjct: 123 SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLE 182
Query: 171 RLRPFGVK 178
           RL PF  K
Sbjct: 183 RLVPFNPK 190

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 56  YHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAA 114
           +H   +   R+D     +A ++KL++  GVG + +D++   + G K++ +  +VTG N  
Sbjct: 69  FHPAYITKERID-----KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVL--EVTGSNVV 121
Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT----GETLLGKTVFILGFGNIGVELAK 170
           S AE  +  ML L+R        I      V         + GKT+  +G G IG  + +
Sbjct: 122 SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLE 181
Query: 171 RLRPFGVK 178
           RL PF  K
Sbjct: 182 RLVPFNPK 189

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            +Y     L    ++     ++EQ +        + G+T+ I+G G +G  +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 194
Query: 177 VKII 180
             ++
Sbjct: 195 FNVL 198

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            +Y     L    ++     ++EQ +        + G+T+ I+G G +G  +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 194
Query: 177 VKII 180
             ++
Sbjct: 195 FNVL 198

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 72  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 131
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            +Y     L    ++     ++EQ +        + G+T+ I+G G +G  +A R + FG
Sbjct: 132 NLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 191
Query: 177 VKII 180
             ++
Sbjct: 192 FNVL 195

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 73  RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132
            A  +K +    VG + +D+ A  + GI+++ +P     + A+ AE  +   L LLR   
Sbjct: 65  HAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPA---YSPAAIAEFALTDTLYLLRNMG 121
Query: 133 EMRMAI---EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           +++  +   + +K G   G+ L  +TV ++G G+IG    K  + FG K+IA
Sbjct: 122 KVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA 173

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 67  DSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 126
           D+  I    +++++  F VGL+ VD+      G++V   P  +T +    A+L I L+L 
Sbjct: 78  DAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDV---ADLAIGLILA 134
Query: 127 LLRKQNEMRMAIEQK--KLG-VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           +LR+  E    + +   K G         GK V I+G G IG+ +A+R   F   I    
Sbjct: 135 VLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFS 194
Query: 184 RS 185
           RS
Sbjct: 195 RS 196

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           ++    I  A ++K+I + GVGL+ +D+ AA   GI+V   P     ++ S AEL + LM
Sbjct: 55  KVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPA---ASSRSVAELAVGLM 111
Query: 125 LGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
             + RK      +MR  +  KK  +  G  L GKT+ I+GFG IG ++AK     G+ I+
Sbjct: 112 FSVARKIAFADRKMREGVWAKKEAM--GIELEGKTIGIIGFGRIGYQVAKIANALGMNIL 169

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            +Y     L    ++     ++EQ +        + G+T+ I+G   +G  +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFG 194
Query: 177 VKII 180
             ++
Sbjct: 195 FNVL 198

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L  + + R+D      A +++++  + VG + +DI  AT+ GI V   P  +T   A  A
Sbjct: 49  LVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLA 108
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKR 171
              +      + K +    + E KK GV        G  + GKT+ I+G G IG  +AKR
Sbjct: 109 FALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR 168
Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSGMLGPLSD 205
            + F ++I+   R+     +V  + +    PL D
Sbjct: 169 AKGFNMRILYYSRT--RKEEVERELNAEFKPLED 200

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 8/154 (5%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L    + R+D      A +++++  + VG + +DI  AT+ GI V   P  +T   A  A
Sbjct: 49  LVTXLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLA 108
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT------GETLLGKTVFILGFGNIGVELAKR 171
              +      + K +    + E KK GV        G  + GKT+ I+G G IG  +AKR
Sbjct: 109 FALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR 168
Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSGMLGPLSD 205
            + F  +I+   R+     +V  + +    PL D
Sbjct: 169 AKGFNXRILYYSRT--RKEEVERELNAEFKPLED 200

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L +  I++A ++KL +  G+G + VD+ AA    I VA +      N+ S AE  + ++L
Sbjct: 103 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV---TYCNSNSVAEHVVMMVL 159
Query: 126 GLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           GL+R      +  R         V     + G  V  +  G IG+ + + L PF + +  
Sbjct: 160 GLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHY 219
Query: 182 TKR 184
           T R
Sbjct: 220 TDR 222

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L +  I++A ++KL +  G+G + VD+ AA    I VA +      N+ S AE  + ++L
Sbjct: 104 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV---TYCNSNSVAEHVVMMVL 160
Query: 126 GLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           GL+R      +  R         V     + G  V  +  G IG+ + + L PF + +  
Sbjct: 161 GLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHY 220
Query: 182 TKR 184
           T R
Sbjct: 221 TDR 223

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           +L    +S+  ++KLI    VG + +D++   + GI V  IP     +  S AE T   +
Sbjct: 53  KLTEELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPA---YSPESVAEHTFAXI 109
Query: 125 LGLLRKQNEMRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRLRPFGVKI 179
           L L+++    R+    KKL       +L +     T+ ++G G IG  +A     FG K+
Sbjct: 110 LTLVKRLK--RIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKV 167
Query: 180 I 180
           +
Sbjct: 168 L 168

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           I++A  +KL +  G+G + VD+ +A    + VA +      N+ S AE  + ++L L+R 
Sbjct: 109 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVR- 164
Query: 131 QNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
            N +      +K G      V     L    V  +  G IG+ + +RL PF V +  T R
Sbjct: 165 -NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 223

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           I++A  +KL +  G+G + VD+ +A    + VA +      N+ S AE  + ++L L+R 
Sbjct: 108 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVR- 163
Query: 131 QNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
            N +      +K G      V     L    V  +  G IG+ + +RL PF V +  T R
Sbjct: 164 -NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 222

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           I++A  +KL +  G+G + VD+ +A    + VA +      N+ S AE  + ++L L+R 
Sbjct: 109 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVR- 164
Query: 131 QNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
            N +      +K G      V     L    V  +  G IG+ + +RL PF V +  T R
Sbjct: 165 -NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 223

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT 110
           R+D+  + RA  +K+I  + VG++ VD+ AA   GI+V   PG +T
Sbjct: 54  RIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLT 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	2e-27
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	3e-27
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	3e-26
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	3e-26
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	3e-26
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	7e-26
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	7e-26
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	1e-25
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	6e-25
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	7e-25
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	8e-25
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	2e-24
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	3e-24
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	3e-24
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	4e-24
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	9e-24
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	1e-23
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	1e-23
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	3e-23
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	7e-23
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	8e-23
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	9e-23
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	5e-22
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	6e-21
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	8e-21
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	9e-21
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	1e-20
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-20
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-20
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	1e-19
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	5e-14
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	3e-12
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	3e-08
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	9e-06
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	7e-05
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	3e-04
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	4e-04

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  106 bits (267), Expect = 2e-27
 Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 15/158 (9%)

Query: 39  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
             + V    D PD      + +  + + +      L    I++A  +KL +  G+G + V
Sbjct: 68  HTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHV 127

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLGVP 146
           D+ +A    + VA +      N+ S AE  + ++L L+R          +        V 
Sbjct: 128 DLQSAIDRNVTVAEVTY---CNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVS 184

Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
               L    V  +  G IG+ + +RL PF V +  T R
Sbjct: 185 HAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 222

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  105 bits (263), Expect = 3e-27
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 15/156 (9%)

Query: 39  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
            Q  V    + PD      I + H+ +        + +  I +A  +KL++  G+G + +
Sbjct: 41  HQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHI 100

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLGVP 146
           D+ AA   G+ VA + G    N  S AE  +  +L L+R        + +          
Sbjct: 101 DLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAY 157

Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
               L GKT+  +G G IG  L +RL+PFG  ++  
Sbjct: 158 RAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYH 193

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  101 bits (254), Expect = 3e-26
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 13/146 (8%)

Query: 42  DVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIK 101
            +V   D+ +V A          R+ +  +++  ++K I     GL+ +   +     + 
Sbjct: 22  KIVRGGDLGNVEA------ALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVT 74

Query: 102 VARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFIL 159
           VA   G    NA + AE  + L+L   ++  +    +++      V     + G+ V +L
Sbjct: 75  VAGNAG---SNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPL-IQGEKVAVL 130

Query: 160 GFGNIGVELAKRLRPFGVKIIATKRS 185
           G G IG  + K L   G ++    R+
Sbjct: 131 GLGEIGTRVGKILAALGAQVRGFSRT 156

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  101 bits (255), Expect = 3e-26
 Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 20/181 (11%)

Query: 10  KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVKTM-R 65
            N+ +VL             ++ LQ+   +QV         ++   + +    +V++  +
Sbjct: 24  ANLRKVLISDS----LDPCCRKILQD-GGLQVVEKQNLSKEELIAELQDCEGLIVRSATK 78

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           + ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S AELT  +++
Sbjct: 79  VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAAELTCGMIM 135

Query: 126 GLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
            L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R++ FG+K I
Sbjct: 136 CLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRMQSFGMKTI 192

Query: 181 A 181
            
Sbjct: 193 G 193

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  101 bits (254), Expect = 7e-26
 Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 17/157 (10%)

Query: 39  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
            ++      +  +      I +  + +        +    I +A ++KL++  GVG + +
Sbjct: 39  HELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHI 98

Query: 91  DINAATRCG--IKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLG 144
           D++   + G  I V  + G    N  S AE  +  ML L+R        I          
Sbjct: 99  DLDYINQTGKKISVLEVTG---SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAI 155

Query: 145 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                 + GKT+  +G G IG  + +RL PF  K + 
Sbjct: 156 AKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELL 192

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  100 bits (252), Expect = 7e-26
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 22/181 (12%)

Query: 10  KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVV--KTM 64
               + L   P          + L+    IQVD    +   ++ ++I NY + VV  +T 
Sbjct: 3   IYTVKALITDP----IDEILIKTLRE-KGIQVDYMPEISKEELLNIIGNYDIIVVRSRT- 56

Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           ++  + I +  ++K+I + G+GL+ +D   A +  IKV   PG    +  S  ELTI LM
Sbjct: 57  KVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPG---ASTDSAVELTIGLM 113

Query: 125 LGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           +   RK        +  I +K  G+   E L GKT+ I+GFG IG ++       G+K++
Sbjct: 114 IAAARKMYTSMALAKSGIFKKIEGL---E-LAGKTIGIVGFGRIGTKVGIIANAMGMKVL 169

Query: 181 A 181
           A
Sbjct: 170 A 170

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =   99 bits (250), Expect = 1e-25
 Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 20/177 (11%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKTM-RLDSN 69
           +VL   P          + L++   ++V      D   + +++ +    +V++  ++   
Sbjct: 5   KVLVAAPLHEK----AIQVLKD-AGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRR 59

Query: 70  CISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR 129
            I  A ++K+I + GVGL+ +D+ AA   GI+V   P     ++ S AEL + LM  + R
Sbjct: 60  VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPA---ASSRSVAELAVGLMFSVAR 116

Query: 130 KQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           K       +      +K+     G  L GKT+ I+GFG IG ++AK     G+ I+ 
Sbjct: 117 KIAFADRKMREGVWAKKEA---MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILL 170

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  100 bits (251), Expect = 6e-25
 Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 15/154 (9%)

Query: 37  PSIQVDVVP---ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDI 92
             ++V  V       +   +      +V++   +D+  ++ A ++K++ + GVGL+ VD+
Sbjct: 23  DQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDV 82

Query: 93  NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPT 147
           +AAT  G+ V   P     N  S AE  + L+L   R+      ++     ++      +
Sbjct: 83  DAATARGVLVVNAPT---SNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSF---S 136

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           G  + GKTV ++G G IG  +A+R+  FG  ++A
Sbjct: 137 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 170

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score = 98.4 bits (246), Expect = 7e-25
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 12/144 (8%)

Query: 51  DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 109
            VI  +  + V  T ++    +  A ++K+I     G + +D+  AT+ GI V ++ G  
Sbjct: 38  GVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSG-- 95

Query: 110 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK--------LGVPTGETLLGKTVFILGF 161
              + + AE T+ L++ L+RK +     I + +         G    E+L GK V ILG 
Sbjct: 96  -LLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGM 154

Query: 162 GNIGVELAKRLRPFGVKIIATKRS 185
           G IG  +A+RL PFGVK+    R 
Sbjct: 155 GAIGKAIARRLIPFGVKLYYWSRH 178

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score = 97.7 bits (244), Expect = 8e-25
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 9/155 (5%)

Query: 36  YPSIQVDVVPISDVPDVIANYHLCVVKTM-----RLDSNCISRANQMKLIMQFGVGLEGV 90
           Y +   D         V+  + L           ++  +      + K+I     G++ +
Sbjct: 4   YVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGVDHI 63

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET 150
           D+N      +  +         + S AE    L+L   +   E    ++           
Sbjct: 64  DVNGIPENVVLCSNAGA----YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSPTTL 119

Query: 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           L GK + ILG+G IG  +A   + FG+++IA  RS
Sbjct: 120 LYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRS 154

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score = 97.3 bits (243), Expect = 2e-24
 Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 17/156 (10%)

Query: 40  QVDVVPISDVPD----VIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINA 94
            V         +    V+       +  T+ L    + +   +++I++ G G + +DI +
Sbjct: 44  TVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKS 103

Query: 95  ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR---------KQNEMRMAIEQKKLGV 145
           A   GI V  +P     +    A+ T+  +L L R         ++     ++EQ +   
Sbjct: 104 AGDLGIAVCNVPA---ASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVA 160

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                + G+T+ I+G G +G  +A R + FG  ++ 
Sbjct: 161 SGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLF 196

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score = 96.9 bits (242), Expect = 3e-24
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 13/145 (8%)

Query: 51  DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 109
             +     L  + + R+D      A +++++  + VG + +DI  AT+ GI V   P  +
Sbjct: 41  KKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVL 100

Query: 110 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---------GETLLGKTVFILG 160
           T    + A+L   L+L   R   +    +   +              G  + GKT+ I+G
Sbjct: 101 T---DATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIG 157

Query: 161 FGNIGVELAKRLRPFGVKIIATKRS 185
            G IG  +AKR + F ++I+   R+
Sbjct: 158 LGRIGQAIAKRAKGFNMRILYYSRT 182

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 96.2 bits (240), Expect = 3e-24
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 9/175 (5%)

Query: 13  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCIS 72
           + VL      P      +    ++       V  +D   +             L +    
Sbjct: 2   SLVLMAQATKPEQLQQLQTTYPDWTFKDAAAVTAADYDQIEV----MYGNHPLLKTILAR 57

Query: 73  RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132
             NQ+K +     G++ + + A    G+ VA   G    +A + +E  +  ML ++R  +
Sbjct: 58  PTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSG---IHADAISESVLAAMLSVVRGYH 114

Query: 133 EMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
              +     +      T  TL G+ + I G G IG  LA +    G+ +I    +
Sbjct: 115 AAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTT 169

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score = 95.7 bits (239), Expect = 4e-24
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 51  DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 109
             +     L      R+D+  + RA  +K+I  + VG++ VD+ AA   GI+V   PG +
Sbjct: 39  KRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVL 98

Query: 110 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGNI 164
           T    + A+LT+ L+L + R+  E              P    G  L G T+ ++G G I
Sbjct: 99  T---EATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRI 155

Query: 165 GVELAKRLRPFGVKIIATKRS 185
           G  +AKR   FG++++   R+
Sbjct: 156 GQAVAKRALAFGMRVVYHART 176

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score = 95.4 bits (238), Expect = 9e-24
 Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 16/170 (9%)

Query: 25  SHNYTKEYLQNY-PSIQVDVVPISDVP------DVIANYH-LCVVKTMRLDSNCISRANQ 76
             +      +        D+  + D        ++ A +  + +      +   +    +
Sbjct: 8   VRDVELPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKK 67

Query: 77  M--KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 134
           +  K I+    G + +D   A   G  +A +P     +  + AEL +   + LLR     
Sbjct: 68  LGVKYILTRTAGTDHIDKEYAKELGFPMAFVPR---YSPNAIAELAVTQAMMLLRHTAYT 124

Query: 135 RMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                +K          + +   TV ++G G IG   A+     G  +I 
Sbjct: 125 TSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIG 174

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score = 95.0 bits (237), Expect = 1e-23
 Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 11/162 (6%)

Query: 28  YTKEYLQNYPSIQVDVVPISDVPDVIANYH----LCVVKTMRLDSNCISRANQM--KLIM 81
           + KE+   +  ++V+       P+ +A       + V + +   +  +          + 
Sbjct: 16  FLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMS 75

Query: 82  QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 141
              VG++ +D+  A   G ++  +P     +  + AE        +LR+   M   + + 
Sbjct: 76  LRNVGVDNIDMAKAKELGFQITNVPV---YSPNAIAEHAAIQAARILRQDKAMDEKVARH 132

Query: 142 KLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
            L      G  +  + V ++G G+IG    + +  FG K+I 
Sbjct: 133 DLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVIT 174

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score = 95.0 bits (237), Expect = 1e-23
 Identities = 33/169 (19%), Positives = 71/169 (42%), Gaps = 15/169 (8%)

Query: 25  SHNYTKEYLQNY---PSIQVDVVPISDVPD---VIANYH-LCVVKTMRLDSNCISR--AN 75
           +     +Y + +       ++        +       +  +  ++T    +    +  A 
Sbjct: 8   ARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAY 67

Query: 76  QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMR 135
            +K +    VG + +D+ A  + GI+++ +P     + A+ AE  +   L LLR   +++
Sbjct: 68  GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPA---YSPAAIAEFALTDTLYLLRNMGKVQ 124

Query: 136 MAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
             ++       G   G+ L  +TV ++G G+IG    K  + FG K+IA
Sbjct: 125 AQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA 173

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score = 95.0 bits (237), Expect = 3e-23
 Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 18/162 (11%)

Query: 31  EYLQNYPSIQVDVVPISDVPD----VIANYHLCVV--KTMRLDSNCISRANQMKLIMQFG 84
           E L+      ++    +   +     I + H   +  +T  L  + I+ A ++  I  F 
Sbjct: 19  ESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTH-LTEDVINAAEKLVAIGAFA 77

Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAI-E 139
           +G   VD++AA + GI V   P     N  S AEL I  +L LLR       +    +  
Sbjct: 78  IGTNQVDLDAAAKRGIPVFNAPF---SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGN 134

Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           +   G        GK + I+G+G+IG +L       G+ +  
Sbjct: 135 KLAAG---SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYF 173

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score = 92.6 bits (231), Expect = 7e-23
 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 10/142 (7%)

Query: 51  DVIANYH-LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGD 108
           +   +   L +    +     I R    +K I  + +G + +D++A    GIKV   P  
Sbjct: 40  ETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHG 99

Query: 109 VTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGN 163
           VT    + AE+ + L+LG  R+  E    I  +      P    GE L  KT+ I GFG+
Sbjct: 100 VT---VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGS 156

Query: 164 IGVELAKRLRPFGVKIIATKRS 185
           IG  LAKR + F + I      
Sbjct: 157 IGQALAKRAQGFDMDIDYFDTH 178

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score = 93.8 bits (234), Expect = 8e-23
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)

Query: 31  EYLQNYPSIQVDVVPISDVPD----VIANYHLCVV--KTMRLDSNCISRANQMKLIMQFG 84
           EY ++     V  +P +         I++ H+  +  +T +L     + AN++  +  F 
Sbjct: 30  EYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRT-QLTEEIFAAANRLIAVGCFS 88

Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAI-E 139
           VG   V++ AA + GI V   P     N  S AEL I  ++ L+R    +         E
Sbjct: 89  VGTNQVELKAARKRGIPVFNAPF---SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWE 145

Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           +  +G      + GKT+ I+G+GNIG ++       G+ +  
Sbjct: 146 KTAIG---SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRY 184

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score = 92.6 bits (231), Expect = 9e-23
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 8/138 (5%)

Query: 53  IANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG 111
             +   +      R+D++ +    ++++I     G +  D++A T  G+ +  +P     
Sbjct: 43  CRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPD---L 99

Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PT--GETLLGKTVFILGFGNIGVE 167
                AEL I L +GL R        +   K     P   G  L   TV  LG G IG+ 
Sbjct: 100 LTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLA 159

Query: 168 LAKRLRPFGVKIIATKRS 185
           +A RL+ +G  +   +  
Sbjct: 160 MADRLQGWGATLQYHEAK 177

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score = 90.8 bits (226), Expect = 5e-22
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 7/127 (5%)

Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
              L +  + +   + +I   GVG + VD+  A R  I V   PG +       A+L I 
Sbjct: 80  GAGLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLA---DDVADLGIA 136

Query: 123 LMLGLLRKQNE----MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
           LML +LR+  +    +R         +P G +  GK + +LG G IG  LA R   FG+ 
Sbjct: 137 LMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMS 196

Query: 179 IIATKRS 185
           +    RS
Sbjct: 197 VRYWNRS 203

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score = 87.7 bits (218), Expect = 6e-21
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
               D+  I    +++++  F VGL+ VD+      G++V   P  +T      A+L I 
Sbjct: 74  NAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLT---DDVADLAIG 130

Query: 123 LMLGLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
           L+L +LR+  E    + +   K           GK V I+G G IG+ +A+R   F   I
Sbjct: 131 LILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190

Query: 180 IATKRS 185
               RS
Sbjct: 191 SYFSRS 196

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score = 87.7 bits (218), Expect = 8e-21
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 27/171 (15%)

Query: 33  LQNYPSIQVDVVPISDVPDV---IANYH-LCVV--KTMRLDSNCISRANQMKLIMQFGV- 85
           L     ++V    +  V  +   +A+   L ++  +T R+    + R  ++K+I Q G  
Sbjct: 23  LLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERT-RVTRQLLDRLPKLKIISQTGRV 81

Query: 86  ---GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMR--- 135
                  +D+ A T  G+ V    G    +  + AELT  L++   R+       ++   
Sbjct: 82  SRDAGGHIDLEACTDKGVVVLEGKG----SPVAPAELTWALVMAAQRRIPQYVASLKHGA 137

Query: 136 -----MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                +           G  L G+T+ I G+G IG  +A   R FG+ ++ 
Sbjct: 138 WQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLV 188

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score = 87.3 bits (217), Expect = 9e-21
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 14/151 (9%)

Query: 46  ISDVPDVIANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVAR 104
             D   +I        ++   +++ IS   + +K+    G G + +D++A    G+  A 
Sbjct: 49  YGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFAN 108

Query: 105 IPGDVTGNAASCAELTIYLMLGLLRKQNE-MRMAIEQK--------KLGVPTGETLLGKT 155
             G       + ++L +YL+L + R  +   R A                 +     G  
Sbjct: 109 SRGAGD---TATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHV 165

Query: 156 VFILGFGNIGVELAKR-LRPFGVKIIATKRS 185
           +  +G G I  E+A++ +   G+K++    +
Sbjct: 166 LGAVGLGAIQKEIARKAVHGLGMKLVYYDVA 196

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score = 87.7 bits (218), Expect = 1e-20
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 24/156 (15%)

Query: 28  YTKEYLQNYPSIQVDVVPISDV-PDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGV 85
           Y +E        +V  VP   +  + + +    +V+++ +++ + +S    +  +     
Sbjct: 14  YARELFSRLG--EVKAVPGRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATA 70

Query: 86  GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145
           G + VD     + GI  +  PG    NA +  E     +L L  +               
Sbjct: 71  GTDHVDEAWLKQAGIGFSAAPG---CNAIAVVEYVFSALLMLAERD-------------- 113

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
             G +L  +T+ I+G GN+G  L  RL   G++ + 
Sbjct: 114 --GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL 147

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score = 87.3 bits (217), Expect = 1e-20
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 9/134 (6%)

Query: 58  LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASC 116
           L V  T  + +  I +    +K I    VG + +D+ AA   GIKV   P  ++    +C
Sbjct: 75  LFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLS---DAC 131

Query: 117 AELTIYLMLGLLRKQNEMRMAIEQK--KLGVPT---GETLLGKTVFILGFGNIGVELAKR 171
           AE+ + L+L   R+  E    +         PT   G  L G+ + I G G IG  +A R
Sbjct: 132 AEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATR 191

Query: 172 LRPFGVKIIATKRS 185
            R FG+ I    R+
Sbjct: 192 ARGFGLAIHYHNRT 205

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score = 86.8 bits (216), Expect = 1e-20
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 18/164 (10%)

Query: 31  EYLQNYPSIQVDVVPISDVP-------DVIANYH-LCVVKTMRLDSNCISRAN-QMKLIM 81
             L      +V+    SD P         +A  H L  + +  +D   +  A   +K+I 
Sbjct: 23  VALARAADCEVEQWD-SDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVIS 81

Query: 82  QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 141
              VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E    ++  
Sbjct: 82  TMSVGIDHLALDEIKKRGIRVGYTPDVLT---DTTAELAVSLLLTTCRRLPEAIEEVKNG 138

Query: 142 KLG--VPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
                 P    G  L   TV I+G G IG  +A+RL+PFGV+  
Sbjct: 139 GWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRF 182

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score = 84.7 bits (210), Expect = 1e-19
 Identities = 23/156 (14%), Positives = 58/156 (37%), Gaps = 24/156 (15%)

Query: 28  YTKEYLQNYPSIQVDVVP-ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGV 85
               +        +  +P  +     +A   + +V+++  +    ++  + ++ +    +
Sbjct: 11  VVDAFFA--DQGSIRRLPGRAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTI 67

Query: 86  GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145
           G + +D++     GI  +  PG    NA    +  +  +L +   +              
Sbjct: 68  GTDHLDLDYFAEAGIAWSSAPG---CNARGVVDYVLGCLLAMAEVR-------------- 110

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
             G  L  +T  ++G G +G  L + LR  G K++ 
Sbjct: 111 --GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLV 144

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score = 68.5 bits (168), Expect = 5e-14
 Identities = 28/152 (18%), Positives = 64/152 (42%), Gaps = 4/152 (2%)

Query: 34  QNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN 93
            + P +++         + +      ++         +++AN++        G++ + ++
Sbjct: 25  AHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLAKANKLSWFQSTYAGVDVL-LD 83

Query: 94  AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG 153
           A  R   ++  + G         +E     +L L+R+    R   +Q+       + L G
Sbjct: 84  ARCRRDYQLTNVRG---IFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKG 140

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           +T+ ILG G+IG  +A   + FG+K++   RS
Sbjct: 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRS 172

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 11/175 (6%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISR 73
            ++F  P F A+  +     +  P  +V    + D           +V    ++   +  
Sbjct: 5   EIIFYHPTFNAAW-WVNALEKALPHARVREWKVGDNNPA----DYALVWQPPVE---MLA 56

Query: 74  ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAELTIYLMLGLLRK 130
             ++K +   G G++ +         +  A IP    + TG      E  +  +L   R+
Sbjct: 57  GRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRR 116

Query: 131 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
            ++ +    Q         T    +V I+G G +G ++A+ L+ +G  +    RS
Sbjct: 117 FDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRS 171

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 51.9 bits (124), Expect = 3e-08
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 136 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
           MAI+       T  T+ G  V +LG G +G+ +A++    G K+    R     +++
Sbjct: 144 MAIQH------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARI 194

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
            T+   G G     L++ L P G +II T R+
Sbjct: 6   GTLLSFGHGYTARVLSRALAPQGWRIIGTSRN 37

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
             + I G G++G+ELA+RL   G ++   +RS
Sbjct: 4   SKILIAGCGDLGLELARRLTAQGHEVTGLRRS 35

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
           ++  G    ++L G  V + G GN+   L K+L   G K++ T
Sbjct: 163 KEAFG---SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVT 202

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
              G+ +   L G TV + G G +G  LA      G +++  
Sbjct: 166 AHRGLGS---LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVA 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.97
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.9
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.84
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.6
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.6
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.44
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.24
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.19
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.15
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.02
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.93
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.73
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.69
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	98.64
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.58
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	98.23
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	98.07
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.0
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.98
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.94
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.92
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.92
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.9
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.86
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.82
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.8
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.74
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	97.72
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.63
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.61
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.55
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.54
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.54
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.5
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.48
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.41
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.38
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.49
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.35
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.34
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.33
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.33
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.23
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.12
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.11
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.1
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.06
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.03
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.02
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.02
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.99
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.99
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.91
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.91
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.91
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.86
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.86
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.84
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	96.84
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.84
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.83
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.77
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.71
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.71
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.68
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.65
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	96.62
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.62
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.54
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.54
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.52
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.48
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.45
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.45
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.42
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.4
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.4
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.39
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.39
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.38
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	96.34
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.29
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.22
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.2
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.18
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.18
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.17
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.15
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.14
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.12
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.11
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	96.11
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.11
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.1
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.1
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	96.1
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.1
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.05
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.04
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.02
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.01
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.0
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.94
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	95.91
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.91
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	95.88
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	95.79
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.76
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.73
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.73
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.69
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.66
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.65
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.65
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.64
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.52
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.5
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.5
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.49
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.45
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	95.45
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	95.43
2duw_A	145	Putative COA-binding protein; ligand binding prote	95.42
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.41
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.41
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	95.4
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	95.31
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	95.31
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.3
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	95.29
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.25
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	95.2
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.13
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.13
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.09
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.08
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.07
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.07
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	95.03
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.02
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.0
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.91
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.89
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.86
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	94.82
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	94.75
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	94.68
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.53
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	94.53
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.52
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.49
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	94.46
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.38
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	94.33
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	94.33
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	94.31
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.27
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	94.25
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.23
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	94.22
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.22
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	94.2
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.15
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.15
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.13
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	94.12
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	94.11
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	94.11
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.11
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	94.1
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	94.1
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.04
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.03
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.01
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	94.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.0
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	93.98
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	93.96
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	93.95
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.93
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.92
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	93.91
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	93.91
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	93.84
3on5_A	362	BH1974 protein; structural genomics, joint center	93.84
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	93.79
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	93.76
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	93.75
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.73
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.7
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	93.67
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	93.6
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	93.58
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.57
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.55
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	93.49
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	93.47
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	93.47
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.46
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.44
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	93.39
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.38
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	93.37
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	93.35
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	93.31
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	93.3
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.29
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	93.28
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	93.28
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	93.25
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.22
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	93.21
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	93.19
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	93.19
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	93.18
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	93.14
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.12
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	93.1
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	93.07
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.06
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	93.02
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	93.02
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	93.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	92.99
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	92.97
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	92.97
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	92.96
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	92.95
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	92.95
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	92.93
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	92.91
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	92.88
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	92.88
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	92.86
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	92.83
4eye_A	342	Probable oxidoreductase; structural genomics, niai	92.83
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	92.82
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	92.8
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	92.8
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	92.78
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	92.78
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	92.76
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	92.75
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	92.75
3gms_A	340	Putative NADPH:quinone reductase; structural genom	92.73
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	92.72
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	92.71
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	92.69
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	92.69
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.68
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	92.68
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	92.67
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	92.64
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	92.63
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	92.63
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	92.62
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	92.62
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	92.62
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	92.61
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	92.58
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	92.57
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	92.57
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.57
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	92.54
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	92.53
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	92.52
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	92.52
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	92.5
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	92.48
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	92.45
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	92.45
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	92.44
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	92.44
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	92.44
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	92.43
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	92.43
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	92.42
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	92.41
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	92.36
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	92.33
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	92.3
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	92.27
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	92.27
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	92.27
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	92.27
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	92.24
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	92.23
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	92.22
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	92.21
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	92.21
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	92.2
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	92.2
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	92.18
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	92.17
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	92.16
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	92.15
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	92.14
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	92.14
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	92.13
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	92.1
3tl2_A	315	Malate dehydrogenase; center for structural genomi	92.09
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	92.08
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	92.05
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	92.05
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	92.05
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	92.02
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	92.02
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	92.0
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	91.97
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	91.95
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	91.94
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	91.93
1xq6_A	253	Unknown protein; structural genomics, protein stru	91.92
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	91.9
3imf_A	257	Short chain dehydrogenase; structural genomics, in	91.89
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	91.88
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	91.86
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	91.86
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	91.85
4g65_A	461	TRK system potassium uptake protein TRKA; structur	91.85
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	91.84
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	91.83
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	91.82
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	91.82
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	91.81
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	91.8
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	91.79
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	91.78
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	91.78
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.78
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	91.77
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	91.76
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	91.76
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	91.76
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	91.72
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	91.7
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	91.7
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	91.69
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	91.69
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	91.69
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	91.67
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	91.66
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	91.66
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	91.66
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	91.65
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	91.65
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	91.64
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	91.63
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	91.61
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	91.58
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	91.58
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	91.58
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	91.58
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	91.56
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	91.55
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	91.55
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	91.54
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	91.53
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	91.53
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	91.51
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	91.51
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	91.48
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	91.48
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.48
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	91.48
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	91.47
4dqx_A	277	Probable oxidoreductase protein; structural genomi	91.47
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	91.46
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	91.44
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	91.44
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	91.44
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	91.43
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	91.41
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	91.4
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	91.4
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	91.39
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	91.39
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	91.39
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	91.38
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	91.35
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	91.35
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	91.33
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	91.32
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	91.31
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	91.31
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	91.27
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	91.25
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	91.25
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	91.22
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	91.22
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	91.21
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	91.2
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	91.18
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	91.18
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	91.16
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	91.16
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.16
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	91.14
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	91.13
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	91.11
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	91.09
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	91.06
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	91.03
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	91.02
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	91.02
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	91.01
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	91.01
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	91.0
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	90.98
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	90.95
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	90.93
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	90.92
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	90.92
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	90.91
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	90.89
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	90.89
3rih_A	293	Short chain dehydrogenase or reductase; structural	90.88
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	90.86
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	90.85
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	90.81
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	90.79
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	90.79
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	90.73
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	90.71
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	90.7
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	90.67
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	90.67
3cxt_A	291	Dehydrogenase with different specificities; rossma	90.67
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	90.65
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	90.65
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	90.65
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	90.6
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	90.6
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	90.56
1xq1_A	266	Putative tropinone reducatse; structural genomics,	90.51
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	90.49
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	90.47
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	90.46
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	90.43
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	90.36
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	90.34
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	90.32
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	90.3
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	90.29
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	90.27
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	90.27
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	90.26
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	90.24
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	90.19
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	90.19
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	90.19
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	90.16
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	90.15
1xkq_A	280	Short-chain reductase family member (5D234); parra	90.14
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	90.14
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	90.14
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	90.11
1lnq_A	336	MTHK channels, potassium channel related protein;	90.07
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	90.03
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	90.02
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	89.96
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	89.96
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	89.93
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	89.9
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	89.83
1spx_A	278	Short-chain reductase family member (5L265); paral	89.82

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=5e-41  Score=287.56  Aligned_cols=192  Identities=22%  Similarity=0.320  Sum_probs=162.5

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCC-hhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEccccCCcc
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD-VPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGV   90 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~aG~d~i   90 (210)
                      |+|+++....++ .++.++.++.+ .+++...+..+ ..+.++++|++++. ..++++++++++|+||||++.|+|+|+|
T Consensus         1 Mkil~~~~~~~~-~p~~~e~l~~~-~~~~~~~~~~~~~~~~l~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~i   78 (334)
T 3kb6_A            1 MNVLFTSVPQED-VPFYQEALKDL-SLKIYTTDVSKVPENELKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHI   78 (334)
T ss_dssp             -CEEECSCCTTH-HHHHHHHTTTS-CEEECSSCGGGSCHHHHHHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTB
T ss_pred             CEEEEeCCCccc-CHHHHHHHHhC-CcEEEeCCcccCCHHHhcCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchh
Confidence            689998755433 55556666554 34443333222 23557889988874 5679999999999999999999999999


Q ss_pred             chhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC---cccccccCeEEEEecChHHHH
Q 028302           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVE  167 (210)
Q Consensus        91 d~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---~~~~l~~~tvGIiG~G~IG~~  167 (210)
                      |++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|...   .+.+|+|+||||||+|+||++
T Consensus        79 d~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~  155 (334)
T 3kb6_A           79 DLDYCKKKGILVTHIPAY---SPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSR  155 (334)
T ss_dssp             CHHHHHHHTCEEECCTTS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHH
T ss_pred             cHHHHHHCCCEEEECCCc---CcHHHHHHHHHHHHHHhhccccccccccccccccccccccceecCcEEEEECcchHHHH
Confidence            999999999999999999   88999999999999999999999999999987643   668999999999999999999


Q ss_pred             HHHHhccCCCEEEEEcCCCCCC-------------CcccCceeEEecCCCCCCCCC
Q 028302          168 LAKRLRPFGVKIIATKRSWASH-------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       168 vA~~~~~fg~~V~~~~~~~~~~-------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +|+++++|||+|++||++.++.             ++.++|.+++.||+|+ +|+|
T Consensus       156 va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~-~T~~  210 (334)
T 3kb6_A          156 VAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTK-ETHH  210 (334)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCT-TTTT
T ss_pred             HHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCCh-hhcc
Confidence            9999999999999999976532             5778999999999999 9998

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=1.4e-40  Score=285.50  Aligned_cols=195  Identities=25%  Similarity=0.365  Sum_probs=163.7

Q ss_pred             CCCCcceEEEeCCCCCCchhhHHHHhhcCCCeEEec----CCCCChhhhcCCceEEEEc-CCCCCHHHHhcC-CCceEEE
Q 028302            8 SDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVK-TMRLDSNCISRA-NQMKLIM   81 (210)
Q Consensus         8 ~~~~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~-p~Lk~i~   81 (210)
                      +.+.+|||+++.+..++   ..+.+.+.+ ++.+..    .+.+++.+.++++|++++. ..++++++++++ |+||||+
T Consensus        24 ~~~~~~kvlv~~~~~~~---~~~~l~~~~-~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~   99 (345)
T 4g2n_A           24 STHPIQKAFLCRRFTPA---IEAELRQRF-DLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIA   99 (345)
T ss_dssp             ---CCCEEEESSCCCHH---HHHHHHHHS-EEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEE
T ss_pred             ccCCCCEEEEeCCCCHH---HHHHHHccC-CEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEE
Confidence            34568899999875433   333333333 444432    2345667788999999986 468999999997 7999999


Q ss_pred             EccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC-----CcccccccCeE
Q 028302           82 QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTV  156 (210)
Q Consensus        82 ~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~~~tv  156 (210)
                      +.++|+|+||++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..     ..+.+|+|+||
T Consensus       100 ~~~~G~D~id~~~a~~~gI~V~n~pg~---~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktv  176 (345)
T 4g2n_A          100 TLSVGYDHIDMAAARSLGIKVLHTPDV---LSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRL  176 (345)
T ss_dssp             ESSSCCTTBCHHHHHHTTCEEECCCSC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEE
T ss_pred             EcCCcccccCHHHHHhCCEEEEECCcc---cchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEE
Confidence            999999999999999999999999999   8999999999999999999999999999999974     24689999999


Q ss_pred             EEEecChHHHHHHHHhccCCCEEEEEcCCCCC--------------CCcccCceeEEecCCCCCCCCC
Q 028302          157 FILGFGNIGVELAKRLRPFGVKIIATKRSWAS--------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       157 GIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~--------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      ||||+|+||+.+|+++++|||+|++|||++.+              +.+.++|.+++.+|+|+ +|+|
T Consensus       177 GIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~-~T~~  243 (345)
T 4g2n_A          177 GIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRP-ELKG  243 (345)
T ss_dssp             EEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCG-GGTT
T ss_pred             EEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCH-HHHH
Confidence            99999999999999999999999999998632              14568999999999999 9987

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=2.9e-40  Score=281.33  Aligned_cols=192  Identities=19%  Similarity=0.255  Sum_probs=166.5

Q ss_pred             CCcceEEEeCCCCCCchhhHHHH-hhcCCCeEEecCC-CCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccC
Q 028302           10 KNITRVLFCGPHFPASHNYTKEY-LQNYPSIQVDVVP-ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGL   87 (210)
Q Consensus        10 ~~~~~ili~~~~~~~~~~~~~~~-~~~~~~v~~~~~~-~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~   87 (210)
                      .++|||+++.+..   ..+.+.+ .+.+|++++...+ .+++.+.++++|++++. ..++.+.++++|+||||++.++|+
T Consensus         3 ~~~mkili~~~~~---~~~~~~L~~~~~p~~~~~~~~~~~~~~~~~~~ad~li~~-~~~~~~~l~~~~~Lk~I~~~~~G~   78 (324)
T 3hg7_A            3 LSQRTLLLLSQDN---AHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAE-PARAKPLLAKANKLSWFQSTYAGV   78 (324)
T ss_dssp             -CCEEEEEESTTH---HHHHHHHHHSCCTTEEEEECSSHHHHHHHGGGCSEEEEC-HHHHGGGGGGCTTCCEEEESSSCC
T ss_pred             ccccEEEEecCCC---HHHHHHHhhccCCCeEEEeCCChhHHHHHhCCCEEEEEC-CCCCHHHHhhCCCceEEEECCCCC
Confidence            4568999997653   4566666 5678999887553 45567788999999874 345678899999999999999999


Q ss_pred             CccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHH
Q 028302           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVE  167 (210)
Q Consensus        88 d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~  167 (210)
                      |++|.+++. +||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|....+.+|+|+||||||+|+||+.
T Consensus        79 d~id~~~~~-~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~  154 (324)
T 3hg7_A           79 DVLLDARCR-RDYQLTNVRGI---FGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQH  154 (324)
T ss_dssp             GGGSCTTSC-CSSEEECCCSC---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHH
T ss_pred             CccChHHHh-CCEEEEECCCc---ChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCcccccceEEEEEECHHHHH
Confidence            999998775 59999999998   89999999999999999999999999999999987788999999999999999999


Q ss_pred             HHHHhccCCCEEEEEcCCCCCC--------------CcccCceeEEecCCCCCCCCC
Q 028302          168 LAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       168 vA~~~~~fg~~V~~~~~~~~~~--------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +|+++++|||+|++|||++++.              .+.++|.+++.+|+|+ +|+|
T Consensus       155 vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~-~T~~  210 (324)
T 3hg7_A          155 IAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATR-ETHH  210 (324)
T ss_dssp             HHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCS-SSTT
T ss_pred             HHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCH-HHHH
Confidence            9999999999999999986432              3567999999999999 9987

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=1e-39  Score=278.21  Aligned_cols=190  Identities=21%  Similarity=0.299  Sum_probs=162.6

Q ss_pred             cceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHH-hcCCCceEEEEccccCCcc
Q 028302           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCI-SRANQMKLIMQFGVGLEGV   90 (210)
Q Consensus        12 ~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l-~~~p~Lk~i~~~~aG~d~i   90 (210)
                      ||||+++.+..+   ...+.+.+.+|++++...+. ...+.++++|+++++..++ ++.+ +.+|+||||++.++|+|++
T Consensus         1 m~kil~~~~~~~---~~~~~L~~~~~~~~~~~~~~-~~~~~~~~ad~l~~~~~~~-~~~l~~~~~~Lk~I~~~~~G~d~i   75 (324)
T 3evt_A            1 MSLVLMAQATKP---EQLQQLQTTYPDWTFKDAAA-VTAADYDQIEVMYGNHPLL-KTILARPTNQLKFVQVISAGVDYL   75 (324)
T ss_dssp             -CEEEECSCCCH---HHHHHHHHHCTTCEEEETTS-CCTTTGGGEEEEESCCTHH-HHHHHSTTCCCCEEECSSSCCTTS
T ss_pred             CcEEEEecCCCH---HHHHHHHhhCCCeEEecCCc-cChHHhCCcEEEEECCcCh-HHHHHhhCCCceEEEECCcccccc
Confidence            479999877543   44555556677777764332 3345678899988765556 8888 6799999999999999999


Q ss_pred             chhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHH-HHHHHhCCCCCC-cccccccCeEEEEecChHHHHH
Q 028302           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM-RMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVEL  168 (210)
Q Consensus        91 d~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~-~~~~~~~~w~~~-~~~~l~~~tvGIiG~G~IG~~v  168 (210)
                      |++++.++||.|+|+||+   ++.+||||+++++|++.|++..+ ++.++++.|... .+++|+|+||||||+|+||+.+
T Consensus        76 d~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~~~~~l~gktvGIiGlG~IG~~v  152 (324)
T 3evt_A           76 PLKALQAAGVVVANTSGI---HADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSL  152 (324)
T ss_dssp             CHHHHHHTTCEEECCTTH---HHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCCSTTCEEEEECCSHHHHHH
T ss_pred             CHHHHHHCCcEEEECCCc---CchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCCCCccccCCeEEEECcCHHHHHH
Confidence            999999999999999998   89999999999999999999999 999999999876 4789999999999999999999


Q ss_pred             HHHhccCCCEEEEEcCCCCCC--------------CcccCceeEEecCCCCCCCCC
Q 028302          169 AKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       169 A~~~~~fg~~V~~~~~~~~~~--------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      |+++++|||+|++|||++++.              .+.++|.+++.+|+|+ +|+|
T Consensus       153 A~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~-~t~~  207 (324)
T 3evt_A          153 AAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTP-TTHH  207 (324)
T ss_dssp             HHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCG-GGTT
T ss_pred             HHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCch-HHHH
Confidence            999999999999999976432              3567999999999999 9987

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=1.4e-39  Score=278.30  Aligned_cols=191  Identities=19%  Similarity=0.237  Sum_probs=161.6

Q ss_pred             cceEEEeCCCCCCchhhHHHHhhcCCCeEEec----CCCCChhhhcCCceEEEE-cCCCCCHHHHhcCCCceEEEEcccc
Q 028302           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVV-KTMRLDSNCISRANQMKLIMQFGVG   86 (210)
Q Consensus        12 ~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~~adv~i~-~~~~~~~~~l~~~p~Lk~i~~~~aG   86 (210)
                      +|||+++.+..+   ...+ .++...++.+..    .+.+++.+.++++|++++ +..++++++++++|+||||++.++|
T Consensus         2 ~~kvlv~~~~~~---~~~~-~l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G   77 (330)
T 4e5n_A            2 LPKLVITHRVHE---EILQ-LLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKG   77 (330)
T ss_dssp             CCEEEECSCCCH---HHHH-HHTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSC
T ss_pred             CCEEEEecCCCH---HHHH-HHHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCc
Confidence            478999876532   2333 343333443322    133556778899999998 4578999999999999999999999


Q ss_pred             CCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC----CcccccccCeEEEEecC
Q 028302           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFG  162 (210)
Q Consensus        87 ~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~~~tvGIiG~G  162 (210)
                      +|+||++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.+++|.|..    ..+.+|+|+||||||+|
T Consensus        78 ~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G  154 (330)
T 4e5n_A           78 FDNFDVDACTARGVWLTFVPDL---LTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMG  154 (330)
T ss_dssp             CTTBCHHHHHHTTCEEECCSST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCS
T ss_pred             ccccCHHHHHhcCcEEEeCCCC---CchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeC
Confidence            9999999999999999999999   8999999999999999999999999999999872    25689999999999999


Q ss_pred             hHHHHHHHHhccCCCEEEEEcCCCCC---------------CCcccCceeEEecCCCCCCCCC
Q 028302          163 NIGVELAKRLRPFGVKIIATKRSWAS---------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       163 ~IG~~vA~~~~~fg~~V~~~~~~~~~---------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +||+.+|+++++|||+|++|||++..               +.+.++|.+++.+|+|+ +|+|
T Consensus       155 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~-~t~~  216 (330)
T 4e5n_A          155 AIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNA-DTLH  216 (330)
T ss_dssp             HHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCST-TTTT
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCH-HHHH
Confidence            99999999999999999999998722               14667999999999999 9987

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=5.4e-39  Score=275.45  Aligned_cols=193  Identities=19%  Similarity=0.295  Sum_probs=163.4

Q ss_pred             cceEEEeCCCCCCchhhHHHHhhcCCCeEEecC---CCCChhhhcCCceEEEEc-CCCCCHH-HHhcCC--CceEEEEcc
Q 028302           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVK-TMRLDSN-CISRAN--QMKLIMQFG   84 (210)
Q Consensus        12 ~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~adv~i~~-~~~~~~~-~l~~~p--~Lk~i~~~~   84 (210)
                      ||||+++.. .++..++++++++.+ ++++...   ..+++.+.++++|++++. ..+++++ +++++|  +||||+..+
T Consensus         1 Mmki~~~~~-~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~   78 (343)
T 2yq5_A            1 MTKIAMYNV-SPIEVPYIEDWAKKN-DVEIKTTDQALTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRI   78 (343)
T ss_dssp             -CEEEEESC-CGGGHHHHHHHHHHH-TCEEEEESSCCSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESS
T ss_pred             CceEEEEec-CcccHHHHHHHHHhC-CeEEEECCCCCCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECc
Confidence            489999984 355577777777554 3444322   235667889999999986 5789999 999985  699999999


Q ss_pred             ccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHH-hCCCCC---CcccccccCeEEEEe
Q 028302           85 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIE-QKKLGV---PTGETLLGKTVFILG  160 (210)
Q Consensus        85 aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~-~~~w~~---~~~~~l~~~tvGIiG  160 (210)
                      +|+|+||++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++ ++.|.+   ..+++|+|+||||||
T Consensus        79 ~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiG  155 (343)
T 2yq5_A           79 VGFNTINFDWTKKYNLLVTNVPVY---SPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIG  155 (343)
T ss_dssp             SCCTTBCSSTTCC--CEEECCSCS---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEEC
T ss_pred             eeecccchhHHHhCCEEEEECCCC---CcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEe
Confidence            999999999999999999999999   8899999999999999999999999999 887543   367899999999999


Q ss_pred             cChHHHHHHHHhccCCCEEEEEcCCCCCC------------CcccCceeEEecCCCCCCCCC
Q 028302          161 FGNIGVELAKRLRPFGVKIIATKRSWASH------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       161 ~G~IG~~vA~~~~~fg~~V~~~~~~~~~~------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +|+||+.+|+++++|||+|++|||++++.            .+.++|.+++.+|+|+ +|+|
T Consensus       156 lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~-~t~~  216 (343)
T 2yq5_A          156 VGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFP-STEN  216 (343)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCT-TTTT
T ss_pred             cCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCH-HHHH
Confidence            99999999999999999999999987532            3567999999999999 9987

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=5.6e-39  Score=275.02  Aligned_cols=194  Identities=24%  Similarity=0.323  Sum_probs=149.7

Q ss_pred             CCcceEEEeCCCCCCchhhHHHHhhcCCCeEEe-cCCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEccccC
Q 028302           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGL   87 (210)
Q Consensus        10 ~~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~aG~   87 (210)
                      |.+|+|+++.+..++   ..+.+.+.++...+. ..+.+++.+.++++|++++. ..++++++++++|+||||+..|+|+
T Consensus        28 ~~~~~vl~~~~~~~~---~~~~L~~~~~v~~~~~~~~~~~~~~~~~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G~  104 (340)
T 4dgs_A           28 NVKPDLLLVEPMMPF---VMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGT  104 (340)
T ss_dssp             -----CEECSCCCHH---HHHTHHHHSCCEETTCGGGHHHHHHHGGGCCEEEEETTTCBCHHHHHHCSSCCEEEEESSCC
T ss_pred             CCCCEEEEECCCCHH---HHHHHhcCCcEEEeCCCCCHHHHHHHhCCcEEEEEcCCCCCCHHHHhhCCCCEEEEECCCCc
Confidence            346789998875433   223333334322211 12334455666899999985 4679999999999999999999999


Q ss_pred             CccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC----cccccccCeEEEEecCh
Q 028302           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGN  163 (210)
Q Consensus        88 d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~~~tvGIiG~G~  163 (210)
                      |+||++++.++||.|+|+||+   ++.+||||+++++|++.|+++.+++.++++.|...    .+.+|+|+||||||+|+
T Consensus       105 d~id~~~a~~~gI~V~n~pg~---~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~  181 (340)
T 4dgs_A          105 DKVDLARARRRNIDVTTTPGV---LADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQ  181 (340)
T ss_dssp             TTBCHHHHHHTTCEEECCCSS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSH
T ss_pred             cccCHHHHHhCCEEEEECCCC---CcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCH
Confidence            999999999999999999998   89999999999999999999999999999999753    46899999999999999


Q ss_pred             HHHHHHHHhccCCCEEEEEcCCCCCC-----------CcccCceeEEecCCCCCCCCC
Q 028302          164 IGVELAKRLRPFGVKIIATKRSWASH-----------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       164 IG~~vA~~~~~fg~~V~~~~~~~~~~-----------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      ||+.+|+++++|||+|++|||++.+.           .+.++|.+++.+|+|+ +|+|
T Consensus       182 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~-~t~~  238 (340)
T 4dgs_A          182 IGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASA-ATQN  238 (340)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC---------
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCH-HHHH
Confidence            99999999999999999999986532           4567999999999999 9986

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=8.7e-39  Score=279.47  Aligned_cols=197  Identities=21%  Similarity=0.270  Sum_probs=161.5

Q ss_pred             CCCCCcceEEEeCCCCCCchhhHHHHhhc-CCCeEEec--CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEE
Q 028302            7 SSDKNITRVLFCGPHFPASHNYTKEYLQN-YPSIQVDV--VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQ   82 (210)
Q Consensus         7 ~~~~~~~~ili~~~~~~~~~~~~~~~~~~-~~~v~~~~--~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~   82 (210)
                      +.++++|||+++.+..+..   .+.+.+. +.++++..  .+++++.+.++++|++++. ..++++++++.+|+||+|++
T Consensus        10 ~~~~~~~kIl~~~~i~~~~---~~~l~~~g~~~v~~~~~~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~p~Lk~I~~   86 (416)
T 3k5p_A           10 SLSRDRINVLLLEGISQTA---VEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGC   86 (416)
T ss_dssp             --CGGGSCEEECSCCCHHH---HHHHHHTTCCCEEECSSCCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEEEE
T ss_pred             CCCCCCcEEEEECCCCHHH---HHHHHHCCCcEEEECCCCCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhCCCcEEEEE
Confidence            5667789999998764432   2223232 33565542  2445667888999988764 46899999999999999999


Q ss_pred             ccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC--cccccccCeEEEEe
Q 028302           83 FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILG  160 (210)
Q Consensus        83 ~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~~~tvGIiG  160 (210)
                      .++|+|+||++++.++||.|+|+|++   |+++||||+++++|++.|++..+++.++++.|...  .+.+++||||||||
T Consensus        87 ~~~G~d~IDl~~a~~~GI~V~n~p~~---n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIG  163 (416)
T 3k5p_A           87 FSVGTNQVELKAARKRGIPVFNAPFS---NTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVG  163 (416)
T ss_dssp             CSSCCTTBCHHHHHHTTCCEECCSST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEEC
T ss_pred             CccccCccCHHHHHhcCcEEEeCCCc---ccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEe
Confidence            99999999999999999999999999   89999999999999999999999999999999864  46899999999999


Q ss_pred             cChHHHHHHHHhccCCCEEEEEcCCCCCC------------CcccCceeEEecCCCCCCCCC
Q 028302          161 FGNIGVELAKRLRPFGVKIIATKRSWASH------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       161 ~G~IG~~vA~~~~~fg~~V~~~~~~~~~~------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +|+||+.+|+++++|||+|++||++.+..            ++.++|.+++.+|+|+ +|+|
T Consensus       164 lG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~-~T~~  224 (416)
T 3k5p_A          164 YGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSK-STSK  224 (416)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC------C
T ss_pred             eCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCH-HHhh
Confidence            99999999999999999999999875422            4667999999999999 9987

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=2.5e-38  Score=268.74  Aligned_cols=188  Identities=18%  Similarity=0.221  Sum_probs=163.3

Q ss_pred             cceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCcc-
Q 028302           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGV-   90 (210)
Q Consensus        12 ~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~i-   90 (210)
                      .|||+++.+..+ ...|.+++.+.+|++++..++.+    ..+++|+++++  .+++++++. |+||||++.++|+|++ 
T Consensus         3 ~mkil~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~----~~~~ad~~i~~--~~~~~~l~~-~~Lk~I~~~~aG~d~i~   74 (315)
T 3pp8_A            3 AMEIIFYHPTFN-AAWWVNALEKALPHARVREWKVG----DNNPADYALVW--QPPVEMLAG-RRLKAVFVLGAGVDAIL   74 (315)
T ss_dssp             CEEEEEECSSSC-HHHHHHHHHHHSTTEEEEECCTT----CCSCCSEEEES--SCCHHHHTT-CCCSEEEESSSCCHHHH
T ss_pred             ceEEEEEcCCCc-hHHHHHHHHHHCCCCEEEecCCC----CccCcEEEEEC--CCCHHHhCC-CCceEEEECCEeccccc
Confidence            379999887543 46788888889999999776543    34689999984  468999999 9999999999999999 


Q ss_pred             c-hhH---HhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHH
Q 028302           91 D-INA---ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGV  166 (210)
Q Consensus        91 d-~~~---~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~  166 (210)
                      | +++   +.++||+|+|++++  +++.+||||+++++|++.|++..+++.++++.|....+++++|+||||||+|+||+
T Consensus        75 d~~~a~~~~~~~gi~v~~~~~~--~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIiG~G~IG~  152 (315)
T 3pp8_A           75 SKLNAHPEMLDASIPLFRLEDT--GMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGA  152 (315)
T ss_dssp             HHHHHCTTSSCTTSCEEEC--C--CCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCCEEEECCSHHHH
T ss_pred             chhhhhhhhhcCCCEEEEcCCC--CccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCCCCcCCCEEEEEeeCHHHH
Confidence            7 775   67889999999987  25799999999999999999999999999999987778999999999999999999


Q ss_pred             HHHHHhccCCCEEEEEcCCCCCC--------------CcccCceeEEecCCCCCCCCC
Q 028302          167 ELAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       167 ~vA~~~~~fg~~V~~~~~~~~~~--------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      .+|+++++|||+|++|||++++.              .+.++|.+++.+|+|+ +|+|
T Consensus       153 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~-~t~~  209 (315)
T 3pp8_A          153 KVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTA-QTVG  209 (315)
T ss_dssp             HHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCG-GGTT
T ss_pred             HHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCch-hhhh
Confidence            99999999999999999986532              3568999999999999 9987

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=7.9e-38  Score=273.68  Aligned_cols=194  Identities=21%  Similarity=0.222  Sum_probs=161.1

Q ss_pred             CCcceEEEeCCCCCCchhhHHHHhhcCC-CeEEec--CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEccc
Q 028302           10 KNITRVLFCGPHFPASHNYTKEYLQNYP-SIQVDV--VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGV   85 (210)
Q Consensus        10 ~~~~~ili~~~~~~~~~~~~~~~~~~~~-~v~~~~--~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~a   85 (210)
                      +++|||+++.+..+   ...+.+.+... ++.+..  .+.+++.+.++++|++++. ...+++++++.+|+||||++.++
T Consensus         2 ~~~~kil~~~~~~~---~~~~~l~~~~~~~v~~~~~~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~   78 (404)
T 1sc6_A            2 KDKIKFLLVEGVHQ---KALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAI   78 (404)
T ss_dssp             CSSCCEEECSCCCH---HHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSS
T ss_pred             CCceEEEEeCCCCH---HHHHHHHhCCCcEEEEcCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECCc
Confidence            34679999876432   22233323222 455432  2445666788999998764 46799999999999999999999


Q ss_pred             cCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC--cccccccCeEEEEecCh
Q 028302           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGN  163 (210)
Q Consensus        86 G~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~~~tvGIiG~G~  163 (210)
                      |+|+||++++.++||.|+|+|++   |+.+||||+++++|++.|+++++++.++++.|...  .+.+|+||||||||+|+
T Consensus        79 G~d~iD~~~a~~~GI~V~n~p~~---n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG~  155 (404)
T 1sc6_A           79 GTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGH  155 (404)
T ss_dssp             CCTTBCHHHHHHTTCCEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSH
T ss_pred             ccCccCHHHHHhCCCEEEecCcc---cHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeECH
Confidence            99999999999999999999999   89999999999999999999999999999999753  56899999999999999


Q ss_pred             HHHHHHHHhccCCCEEEEEcCCCCCC------------CcccCceeEEecCCCCCCCCC
Q 028302          164 IGVELAKRLRPFGVKIIATKRSWASH------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       164 IG~~vA~~~~~fg~~V~~~~~~~~~~------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      ||+.+|+++++|||+|++|||+....            ++.++|.++..+|+|+ +|+|
T Consensus       156 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~-~t~~  213 (404)
T 1sc6_A          156 IGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENP-STKN  213 (404)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSST-TTTT
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCCh-HHHH
Confidence            99999999999999999999965321            3567899999999999 9987

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=1.7e-37  Score=265.75  Aligned_cols=193  Identities=16%  Similarity=0.236  Sum_probs=163.8

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEecCC---CCChhhhcCCceEEEEc-CCCCCHHHHhcCCC--ceEEEEcccc
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVG   86 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~--Lk~i~~~~aG   86 (210)
                      |||+++... +....+++.+.+.+|++++..++   .+++.+.++++|+++++ ..+++++.++++|+  ||||++.++|
T Consensus         2 mkil~~~~~-~~~~~~~~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   80 (333)
T 1j4a_A            2 TKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVG   80 (333)
T ss_dssp             CEEEECSCC-GGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             cEEEEEecC-ccCHHHHHHHHhhCCCcEEEECCCCCcHHHHHHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEECCcc
Confidence            688887543 22344556666667766664332   34667778999999985 45789999999987  9999999999


Q ss_pred             CCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC--CcccccccCeEEEEecChH
Q 028302           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNI  164 (210)
Q Consensus        87 ~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~~~tvGIiG~G~I  164 (210)
                      +|+||++++.++||.|+|+||+   ++++||||+++++|++.|++..+++.++++.|.+  ..+.++.|+||||||+|+|
T Consensus        81 ~d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~I  157 (333)
T 1j4a_A           81 VDNIDMAKAKELGFQITNVPVY---SPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHI  157 (333)
T ss_dssp             CTTBCHHHHHHTTCEEECCCCS---CHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHH
T ss_pred             cccccHHHHHhCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCHH
Confidence            9999999999999999999998   8899999999999999999999999999999853  3568999999999999999


Q ss_pred             HHHHHHHhccCCCEEEEEcCCCCC-------------CCcccCceeEEecCCCCCCCCC
Q 028302          165 GVELAKRLRPFGVKIIATKRSWAS-------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       165 G~~vA~~~~~fg~~V~~~~~~~~~-------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      |+.+|+++++|||+|++||+++++             +.+.++|.+++.+|+|+ +|+|
T Consensus       158 G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~-~t~~  215 (333)
T 1j4a_A          158 GQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVP-ANVH  215 (333)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCG-GGTT
T ss_pred             HHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcH-HHHH
Confidence            999999999999999999997642             13557899999999999 9986

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-37  Score=266.33  Aligned_cols=193  Identities=27%  Similarity=0.397  Sum_probs=159.0

Q ss_pred             CCcceEEEeCCCCCCchhhHHHHhhcC-CCeEEe-cCCCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEEcccc
Q 028302           10 KNITRVLFCGPHFPASHNYTKEYLQNY-PSIQVD-VVPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVG   86 (210)
Q Consensus        10 ~~~~~ili~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~p~Lk~i~~~~aG   86 (210)
                      +.+++|++..+..+   .. .+.++.. .++... ..+.+++.+.++++|+++++. .+++++.++++|+||||++.++|
T Consensus        24 ~~~~~vli~~~~~~---~~-~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G   99 (335)
T 2g76_A           24 ANLRKVLISDSLDP---CC-RKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTG   99 (335)
T ss_dssp             --CCEEEECSCCCH---HH-HHHHHHHTCEEEECCSCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSSS
T ss_pred             ccceEEEEcCCCCH---HH-HHHHHhCCCEEEECCCCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEECCCC
Confidence            34568888765322   22 2333322 223222 123456677789999998753 56899999999999999999999


Q ss_pred             CCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC--cccccccCeEEEEecChH
Q 028302           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNI  164 (210)
Q Consensus        87 ~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~~~tvGIiG~G~I  164 (210)
                      +|+||++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|...  .+.+++|+||||||+|.|
T Consensus       100 ~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIGlG~I  176 (335)
T 2g76_A          100 VDNVDLEAATRKGILVMNTPNG---NSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRI  176 (335)
T ss_dssp             CTTBCHHHHHHHTCEEECCSST---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSHH
T ss_pred             cchhChHHHHhCCeEEEECCCc---cchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEeECHH
Confidence            9999999999999999999998   89999999999999999999999999999999753  468999999999999999


Q ss_pred             HHHHHHHhccCCCEEEEEcCCCCC--------------CCcccCceeEEecCCCCCCCCC
Q 028302          165 GVELAKRLRPFGVKIIATKRSWAS--------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       165 G~~vA~~~~~fg~~V~~~~~~~~~--------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      |+.+|+++++|||+|++|||+..+              +.+.++|.+++.+|+|+ +|+|
T Consensus       177 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~-~t~~  235 (335)
T 2g76_A          177 GREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLP-STTG  235 (335)
T ss_dssp             HHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCT-TTTT
T ss_pred             HHHHHHHHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCH-HHHH
Confidence            999999999999999999997542              14668999999999999 9986

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.7e-37  Score=264.47  Aligned_cols=192  Identities=18%  Similarity=0.265  Sum_probs=160.4

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEecC---CCCChhhhcCCceEEEEc-CCCCCHHHHhcCCC--ceEEEEcccc
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVG   86 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~--Lk~i~~~~aG   86 (210)
                      |||+++.... ....+++.+.+.+ ++++..+   ..+++.+.++++|+++++ ..+++++.++++|+  ||||++.++|
T Consensus         1 Mkil~~~~~~-~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   78 (333)
T 1dxy_A            1 MKIIAYGARV-DEIQYFKQWAKDT-GNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG   78 (333)
T ss_dssp             CEEEECSCCT-TTHHHHHHHHHHH-CCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CEEEEEeccc-cCHHHHHHHHHhC-CeEEEEcCCCChHHHHHHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcc
Confidence            5788765332 2244555554433 3333322   235667778999999885 46799999999987  9999999999


Q ss_pred             CCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCC---CCcccccccCeEEEEecCh
Q 028302           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG---VPTGETLLGKTVFILGFGN  163 (210)
Q Consensus        87 ~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~---~~~~~~l~~~tvGIiG~G~  163 (210)
                      +|+||++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|.   ...+.+|.|+||||||+|+
T Consensus        79 ~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~  155 (333)
T 1dxy_A           79 TDNIDMTAMKQYGIRLSNVPAY---SPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGH  155 (333)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSH
T ss_pred             cCccCHHHHHhCCCEEEeCCCC---CchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCH
Confidence            9999999999999999999998   889999999999999999999999999999973   3356899999999999999


Q ss_pred             HHHHHHHHhccCCCEEEEEcCCCCCC------------CcccCceeEEecCCCCCCCCC
Q 028302          164 IGVELAKRLRPFGVKIIATKRSWASH------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       164 IG~~vA~~~~~fg~~V~~~~~~~~~~------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      ||+.+|+++++|||+|++|||+..+.            .+.++|.+++.+|+|+ +|+|
T Consensus       156 IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~-~t~~  213 (333)
T 1dxy_A          156 IGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIE-QNTH  213 (333)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCG-GGTT
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCch-hHHH
Confidence            99999999999999999999976532            3567899999999999 9987

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.6e-37  Score=263.16  Aligned_cols=190  Identities=25%  Similarity=0.366  Sum_probs=159.3

Q ss_pred             cceEEEeCCCCCCchhhHHHHhhcCCCeEEec---CCCCChhhhcCCceEEEEcCC-CCCHHHHhcCCCceEEEEccccC
Q 028302           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGL   87 (210)
Q Consensus        12 ~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~adv~i~~~~-~~~~~~l~~~p~Lk~i~~~~aG~   87 (210)
                      +|+|++..+..   ....+.+ +.. .+++..   .+.+++.+.++++|+++++.. +++++.++++|+||||++.++|+
T Consensus         3 ~~~il~~~~~~---~~~~~~l-~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   77 (307)
T 1wwk_A            3 RMKVLVAAPLH---EKAIQVL-KDA-GLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGL   77 (307)
T ss_dssp             -CEEEECSCCC---HHHHHHH-HHT-TCEEEECSSCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESSSCC
T ss_pred             ceEEEEeCCCC---HHHHHHH-HhC-CeEEEeCCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECCccc
Confidence            47898876532   2223333 322 334432   233556677899999998644 59999999999999999999999


Q ss_pred             CccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC--CcccccccCeEEEEecChHH
Q 028302           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIG  165 (210)
Q Consensus        88 d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~~~tvGIiG~G~IG  165 (210)
                      |++|++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..  ..+.+|.|+||||||+|+||
T Consensus        78 d~id~~~~~~~gi~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG  154 (307)
T 1wwk_A           78 DNIDVEAAKEKGIEVVNAPAA---SSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIG  154 (307)
T ss_dssp             TTBCHHHHHHHTCEEECCGGG---GHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHH
T ss_pred             cccCHHHHHhCCcEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHH
Confidence            999999999999999999998   8999999999999999999999999999999975  35689999999999999999


Q ss_pred             HHHHHHhccCCCEEEEEcCCCCC--------------CCcccCceeEEecCCCCCCCCC
Q 028302          166 VELAKRLRPFGVKIIATKRSWAS--------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       166 ~~vA~~~~~fg~~V~~~~~~~~~--------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +.+|+++++|||+|++|||++.+              +.+..+|.++..+|+|+ +|+|
T Consensus       155 ~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~-~t~~  212 (307)
T 1wwk_A          155 YQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVE-STYH  212 (307)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCST-TTTT
T ss_pred             HHHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCCh-HHhh
Confidence            99999999999999999998753              13557899999999999 9986

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=3.4e-37  Score=265.15  Aligned_cols=161  Identities=26%  Similarity=0.409  Sum_probs=146.5

Q ss_pred             CCChhhhcCCceEEEEcC---CCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHH
Q 028302           46 ISDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY  122 (210)
Q Consensus        46 ~~~~~~~~~~adv~i~~~---~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~  122 (210)
                      .+++.+.++++|++++..   ..++++.++++|+||||++.++|+|+||++++.++||.|+|++|+   |+.+||||+++
T Consensus        53 ~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~gI~V~n~~g~---~~~~vAE~~~~  129 (351)
T 3jtm_A           53 DCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGS---NVVSVAEDELM  129 (351)
T ss_dssp             TSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTTCEEEECTTT---THHHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcCeeEEECCCc---CchHHHHHHHH
Confidence            346778899999999743   358999999999999999999999999999999999999999999   89999999999


Q ss_pred             HHHHHHhhHHHHHHHHHhCCCCCC----cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC----------
Q 028302          123 LMLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS----------  188 (210)
Q Consensus       123 ~~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~----------  188 (210)
                      ++|++.|++..+++.++++.|...    .+.+|+|+||||||+|+||+.+|+++++|||+|++|||++.+          
T Consensus       130 l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~  209 (351)
T 3jtm_A          130 RILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAK  209 (351)
T ss_dssp             HHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCE
T ss_pred             HHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCe
Confidence            999999999999999999999842    467899999999999999999999999999999999987532          


Q ss_pred             ------CCcccCceeEEecCCCCCCCCC
Q 028302          189 ------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       189 ------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                            +.+.++|.+++.+|+|+ +|+|
T Consensus       210 ~~~~l~ell~~aDvV~l~~Plt~-~t~~  236 (351)
T 3jtm_A          210 FVEDLNEMLPKCDVIVINMPLTE-KTRG  236 (351)
T ss_dssp             ECSCHHHHGGGCSEEEECSCCCT-TTTT
T ss_pred             EcCCHHHHHhcCCEEEECCCCCH-HHHH
Confidence                  14668999999999999 9987

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.1e-36  Score=258.70  Aligned_cols=189  Identities=26%  Similarity=0.399  Sum_probs=159.5

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEec---CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEccccCC
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE   88 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~aG~d   88 (210)
                      |||+++.+. +  ....+.+.+.  .+++..   .+.+++.+.++++|++++. ..+++++.++++|+||||++.++|+|
T Consensus         6 mkil~~~~~-~--~~~~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   80 (313)
T 2ekl_A            6 VKALITDPI-D--EILIKTLREK--GIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLD   80 (313)
T ss_dssp             CEEEECSCC-C--HHHHHHHHHT--TCEEEECTTCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCCT
T ss_pred             eEEEEECCC-C--HHHHHHHHhC--CcEEEeCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCCC
Confidence            688887653 2  2233333332  233322   2335566778999998874 45789999999999999999999999


Q ss_pred             ccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHH
Q 028302           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVEL  168 (210)
Q Consensus        89 ~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~v  168 (210)
                      ++|.+++.++||.|+|+||+   ++.+||||+++++|++.|+++.+++.++++.|....+.++.|+||||||+|+||+.+
T Consensus        81 ~id~~~~~~~gi~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~G~IG~~~  157 (313)
T 2ekl_A           81 NIDTEEAEKRNIKVVYAPGA---STDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKV  157 (313)
T ss_dssp             TBCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHHHHHH
T ss_pred             ccCHHHHHhCCeEEEeCCCC---CchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEeeCHHHHHH
Confidence            99999999999999999999   899999999999999999999999999999997556789999999999999999999


Q ss_pred             HHHhccCCCEEEEEcCCCCC--------------CCcccCceeEEecCCCCCCCCC
Q 028302          169 AKRLRPFGVKIIATKRSWAS--------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       169 A~~~~~fg~~V~~~~~~~~~--------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      |+++++|||+|++|||++++              +.+.++|.++..+|+|+ +|+|
T Consensus       158 A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~-~t~~  212 (313)
T 2ekl_A          158 GIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSK-DAKP  212 (313)
T ss_dssp             HHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCT-TSCC
T ss_pred             HHHHHHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCCh-HHHH
Confidence            99999999999999998653              13567899999999999 9986

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=9.2e-37  Score=261.01  Aligned_cols=192  Identities=17%  Similarity=0.224  Sum_probs=160.7

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEecC----CCCChhhhcCCceEEEEc-CCCCCHHHHhcCCC--ceEEEEccc
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGV   85 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~--Lk~i~~~~a   85 (210)
                      |||+++... +....+++.+.+.+ ++++..+    +.+++.+.++++|+++++ ..+++++.++++|+  ||||+..++
T Consensus         1 mki~~~~~~-~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   78 (331)
T 1xdw_A            1 MKVLCYGVR-DVELPIFEACNKEF-GYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTA   78 (331)
T ss_dssp             CEEEECSCC-TTTHHHHHHHGGGT-CCEEEECSCCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSS
T ss_pred             CEEEEEecC-ccCHHHHHHHHHhc-CeEEEECCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEccc
Confidence            578887533 22244555554444 4444322    224566778999999985 46799999999998  999999999


Q ss_pred             cCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC---CcccccccCeEEEEecC
Q 028302           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFG  162 (210)
Q Consensus        86 G~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~~~tvGIiG~G  162 (210)
                      |+|+||++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..   ..+.++.|+||||||+|
T Consensus        79 G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G  155 (331)
T 1xdw_A           79 GTDHIDKEYAKELGFPMAFVPRY---SPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLG  155 (331)
T ss_dssp             CCTTBCHHHHHHTTCCEECCCCC---CHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCS
T ss_pred             cccccCHHHHHhCCcEEEeCCCC---CcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcC
Confidence            99999999999999999999998   8899999999999999999999999999999853   35689999999999999


Q ss_pred             hHHHHHHHHhccCCCEEEEEcCCCCCC------------CcccCceeEEecCCCCCCCCC
Q 028302          163 NIGVELAKRLRPFGVKIIATKRSWASH------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       163 ~IG~~vA~~~~~fg~~V~~~~~~~~~~------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +||+.+|+++++|||+|++|||+..+.            .+.++|.+++.+|+|+ +|+|
T Consensus       156 ~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~-~t~~  214 (331)
T 1xdw_A          156 RIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIK-ENGA  214 (331)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCT-TTCC
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCch-HHHH
Confidence            999999999999999999999976532            3567899999999999 9987

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=6e-37  Score=263.76  Aligned_cols=191  Identities=21%  Similarity=0.258  Sum_probs=158.2

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEecCC-----CCChhhhcCCceEEEEc--CCCCCHHHHhcCCCceEEEEccc
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP-----ISDVPDVIANYHLCVVK--TMRLDSNCISRANQMKLIMQFGV   85 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~adv~i~~--~~~~~~~~l~~~p~Lk~i~~~~a   85 (210)
                      |||+++...... ...++.+ +...++++..++     .+++.+.++++|++++.  ..+++++.++++|+||+|+..++
T Consensus         3 mki~~~d~~~~~-~~~~~~~-~~l~~~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~g~   80 (352)
T 3gg9_A            3 LKIAVLDDYQDA-VRKLDCF-SLLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQTGR   80 (352)
T ss_dssp             CEEEECCCTTCC-GGGSGGG-GGGTTSEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEESSC
T ss_pred             eEEEEEcCcccc-chhhhhh-hhhcCceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEeCc
Confidence            799998765433 1111111 122234444332     24567888999999973  46899999999999999999999


Q ss_pred             cC----CccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC------------ccc
Q 028302           86 GL----EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------------TGE  149 (210)
Q Consensus        86 G~----d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~------------~~~  149 (210)
                      |+    |+||++++.++||.|+|+||+ +   .+||||+++++|++.|++..+++.++++.|...            .+.
T Consensus        81 G~~~~~d~id~~~a~~~gI~V~n~pg~-~---~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~  156 (352)
T 3gg9_A           81 VSRDAGGHIDLEACTDKGVVVLEGKGS-P---VAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGR  156 (352)
T ss_dssp             CCCSSSCSBCHHHHHHHTCEEECCCCC-S---HHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBC
T ss_pred             ccCCccCcccHHHHHhCCeEEEECCCC-c---HHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCc
Confidence            99    999999999999999999997 4   899999999999999999999999999999752            468


Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC---------------CCcccCceeEEecCCCCCCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS---------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~---------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +|+|+||||||+|+||+.+|+++++|||+|++|||+.+.               +.+.++|.+++.+|+|+ +|+|
T Consensus       157 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~-~t~~  231 (352)
T 3gg9_A          157 VLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLND-ETRS  231 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCST-TTTT
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcH-HHHH
Confidence            999999999999999999999999999999999986421               14668999999999999 9986

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=1.4e-36  Score=257.75  Aligned_cols=191  Identities=25%  Similarity=0.348  Sum_probs=158.8

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEecC---CCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEEccccCC
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLE   88 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~p~Lk~i~~~~aG~d   88 (210)
                      |+|+++.+..++.   .+.+.+...++.+...   +.+++.+.++++|++++.. .+++++.++++|+||||++.++|+|
T Consensus         1 ~~vl~~~~~~~~~---~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   77 (311)
T 2cuk_A            1 MRVLVTRTLPGKA---LDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVD   77 (311)
T ss_dssp             CEEEESSCCSSST---THHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCCT
T ss_pred             CEEEEeCCCCHHH---HHHHHhcCCeEEEecCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCcc
Confidence            5788876543332   2333333124443222   3355667789999998754 4789999999999999999999999


Q ss_pred             ccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC-----CcccccccCeEEEEecCh
Q 028302           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILGFGN  163 (210)
Q Consensus        89 ~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~~~tvGIiG~G~  163 (210)
                      ++|++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..     ..+.++.|+||||||+|+
T Consensus        78 ~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~  154 (311)
T 2cuk_A           78 HVDLEAARERGIRVTHTPGV---LTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGR  154 (311)
T ss_dssp             TBCHHHHHTTTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSH
T ss_pred             ccCHHHHHhCCcEEEECCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECH
Confidence            99999999999999999999   8999999999999999999999999999999963     136799999999999999


Q ss_pred             HHHHHHHHhccCCCEEEEEcCCCCC---------CCcccCceeEEecCCCCCCCCC
Q 028302          164 IGVELAKRLRPFGVKIIATKRSWAS---------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       164 IG~~vA~~~~~fg~~V~~~~~~~~~---------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      ||+.+|+++++|||+|++|||+..+         +.+.++|.++..+|+|+ +|+|
T Consensus       155 IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~-~t~~  209 (311)
T 2cuk_A          155 IGQAVAKRALAFGMRVVYHARTPKPLPYPFLSLEELLKEADVVSLHTPLTP-ETHR  209 (311)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCCT-TTTT
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCcccccccCCHHHHHhhCCEEEEeCCCCh-HHHh
Confidence            9999999999999999999998653         14567899999999999 9986

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.8e-36  Score=258.11  Aligned_cols=190  Identities=24%  Similarity=0.326  Sum_probs=158.5

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEecC----CCCChhhhcCCceEEEEcC-CCCCHHHHhcCCC-ceEEEEcccc
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVVKT-MRLDSNCISRANQ-MKLIMQFGVG   86 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~p~-Lk~i~~~~aG   86 (210)
                      ++|++..+. +  ....+ .++...++++...    +.+++.+.++++|+++++. .+++++.++++|+ ||||++.++|
T Consensus         2 ~~vl~~~~~-~--~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~G   77 (320)
T 1gdh_A            2 KKILITWPL-P--EAAMA-RARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIG   77 (320)
T ss_dssp             CEEEESSCC-C--HHHHH-HHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSC
T ss_pred             cEEEEcCCC-C--HHHHH-HHHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCcc
Confidence            578877643 2  22233 3343334554332    2345667789999998764 4799999999999 9999999999


Q ss_pred             CCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC-----CcccccccCeEEEEec
Q 028302           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILGF  161 (210)
Q Consensus        87 ~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~~~tvGIiG~  161 (210)
                      +|+||++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..     ..+.++.|+||||||+
T Consensus        78 ~d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~  154 (320)
T 1gdh_A           78 FDHIDLDACKARGIKVGNAPHG---VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGF  154 (320)
T ss_dssp             CTTBCHHHHHHTTCEEECCCCS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECC
T ss_pred             cccccHHHHHhCCcEEEEcCCC---CHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECc
Confidence            9999999999999999999999   8999999999999999999999999999999962     2467999999999999


Q ss_pred             ChHHHHHHHHhccCCCEEEEEcC-CCCC---------------CCcccCceeEEecCCCCCCCCC
Q 028302          162 GNIGVELAKRLRPFGVKIIATKR-SWAS---------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       162 G~IG~~vA~~~~~fg~~V~~~~~-~~~~---------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      |+||+.+|+++++|||+|++||+ ++++               +.+.++|.+++.+|+|+ +|+|
T Consensus       155 G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~-~t~~  218 (320)
T 1gdh_A          155 GSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTP-ETRY  218 (320)
T ss_dssp             SHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCT-TTTT
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCch-HHHh
Confidence            99999999999999999999999 6532               13457899999999999 9986

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=1e-36  Score=263.00  Aligned_cols=155  Identities=17%  Similarity=0.251  Sum_probs=136.2

Q ss_pred             hhcCCceEEEEcCCCCCHHHHhcCCCceEEEEc-cccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHh
Q 028302           51 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQF-GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR  129 (210)
Q Consensus        51 ~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~-~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R  129 (210)
                      +.+.++|+++. ..+++++.++++|+||+|+.. ++|+|+||++++.++||.|+|+||+   ++.+||||+++++|++.|
T Consensus        72 ~~~~~~~~i~~-~~~i~~~~l~~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~---~~~~vAE~~l~l~L~~~R  147 (365)
T 4hy3_A           72 DILGRARYIIG-QPPLSAETLARMPALRSILNVESNLLNNMPYEVLFQRGIHVVTTGQV---FAEPVAEIGLGFALALAR  147 (365)
T ss_dssp             THHHHEEEEEE-CCCCCHHHHTTCTTCCEEECCSSSCCSCSCTTHHHHSCCEEEECGGG---GHHHHHHHHHHHHHHHHH
T ss_pred             HhhCCeEEEEe-CCCCCHHHHhhCCCCeEEEEecccccCcccHHHHhcCCeEEEeCCCc---cchHHHHHHHHHHHHHHh
Confidence            33467777774 468999999999999999975 8999999999999999999999998   899999999999999999


Q ss_pred             hHHHHHHHHHhCC--CCC---CcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC--------------C
Q 028302          130 KQNEMRMAIEQKK--LGV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------------S  190 (210)
Q Consensus       130 ~~~~~~~~~~~~~--w~~---~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~--------------~  190 (210)
                      ++..+++.+++|.  |..   ..+.+|+|+||||||+|+||+.+|+++++|||+|++|||+.++.              .
T Consensus       148 ~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~el  227 (365)
T 4hy3_A          148 GIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDV  227 (365)
T ss_dssp             TTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHH
T ss_pred             chhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHH
Confidence            9999999999998  432   25689999999999999999999999999999999999975421              4


Q ss_pred             cccCceeEEecCCCCCCCCC
Q 028302          191 QVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       191 ~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +.++|.+++.+|+|+ +|+|
T Consensus       228 l~~aDvV~l~~Plt~-~T~~  246 (365)
T 4hy3_A          228 LTKSDFIFVVAAVTS-ENKR  246 (365)
T ss_dssp             HHSCSEEEECSCSSC-C---
T ss_pred             HhcCCEEEEcCcCCH-HHHh
Confidence            667999999999999 9987

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=8.4e-36  Score=259.56  Aligned_cols=160  Identities=24%  Similarity=0.331  Sum_probs=145.1

Q ss_pred             CChhhhcCCceEEEEc---CCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHH
Q 028302           47 SDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (210)
Q Consensus        47 ~~~~~~~~~adv~i~~---~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~  123 (210)
                      +++.+.++++|++++.   ..+++++.++++|+||||++.++|+|+||++++.++||.|+|++++   ++.+||||++++
T Consensus        81 ~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~---~~~~VAE~al~l  157 (393)
T 2nac_A           81 SVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYC---NSISVAEHVVMM  157 (393)
T ss_dssp             SHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTT---THHHHHHHHHHH
T ss_pred             HHHHHhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCc---ccHHHHHHHHHH
Confidence            4567888999999874   2368999999999999999999999999999999999999999998   889999999999


Q ss_pred             HHHHHhhHHHHHHHHHhCCCCC----CcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC-----------
Q 028302          124 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS-----------  188 (210)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~-----------  188 (210)
                      +|++.|++..+++.++++.|..    ..+.+|+|+||||||+|+||+.+|+++++|||+|++||++..+           
T Consensus       158 iL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~  237 (393)
T 2nac_A          158 ILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTW  237 (393)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEE
T ss_pred             HHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCcee
Confidence            9999999999999999999974    2357899999999999999999999999999999999987532           


Q ss_pred             -----CCcccCceeEEecCCCCCCCCC
Q 028302          189 -----HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       189 -----~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                           +.+.++|.+++.+|+|+ +|+|
T Consensus       238 ~~~l~ell~~aDvV~l~~Plt~-~t~~  263 (393)
T 2nac_A          238 HATREDMYPVCDVVTLNCPLHP-ETEH  263 (393)
T ss_dssp             CSSHHHHGGGCSEEEECSCCCT-TTTT
T ss_pred             cCCHHHHHhcCCEEEEecCCch-HHHH
Confidence                 14668999999999999 9987

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=2.4e-35  Score=253.49  Aligned_cols=194  Identities=17%  Similarity=0.313  Sum_probs=155.9

Q ss_pred             CCcceEEEeCCCCCCchhhHHHHhhcCCCeEEe-cCCCCChhhh-cCCceEEEE-cCCCCCHHHHhcCCCceEEEEcccc
Q 028302           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDV-IANYHLCVV-KTMRLDSNCISRANQMKLIMQFGVG   86 (210)
Q Consensus        10 ~~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~-~~~adv~i~-~~~~~~~~~l~~~p~Lk~i~~~~aG   86 (210)
                      +.+|+|++....... .  ..+.++...++... ..+.+++.+. +.++|++++ ...+++++.++++|+||||+..++|
T Consensus        19 ~~kp~i~~l~~~~~~-~--~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G   95 (347)
T 1mx3_A           19 SHMPLVALLDGRDCT-V--EMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSG   95 (347)
T ss_dssp             --CCEEEESSCSCCT-T--THHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSC
T ss_pred             CCCCEEEEEcCCcch-h--hHHHhhccceEEecCCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEEcccc
Confidence            457889988753221 1  13344443333332 2234455554 367787665 3467999999999999999999999


Q ss_pred             CCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC---------cccccccCeEE
Q 028302           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTVF  157 (210)
Q Consensus        87 ~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---------~~~~l~~~tvG  157 (210)
                      +|+||++++.++||.|+|+||+   ++++||||+++++|++.|++..+++.++++.|...         ...+++|+|||
T Consensus        96 ~d~id~~~~~~~gI~V~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvG  172 (347)
T 1mx3_A           96 FDNIDIKSAGDLGIAVCNVPAA---SVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLG  172 (347)
T ss_dssp             CTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEE
T ss_pred             cCcccHHHHHhCCceEEECCCC---CHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEE
Confidence            9999999999999999999999   88999999999999999999999999999999642         12689999999


Q ss_pred             EEecChHHHHHHHHhccCCCEEEEEcCCCCCC---------------CcccCceeEEecCCCCCCCCC
Q 028302          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       158 IiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~---------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      |||+|+||+.+|+++++|||+|++||++..+.               .+.++|.++..+|+|+ +|+|
T Consensus       173 IIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~-~t~~  239 (347)
T 1mx3_A          173 IIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNE-HNHH  239 (347)
T ss_dssp             EECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCT-TCTT
T ss_pred             EEeECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCH-HHHH
Confidence            99999999999999999999999999875421               3567899999999999 9986

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=1.1e-35  Score=254.25  Aligned_cols=194  Identities=23%  Similarity=0.297  Sum_probs=157.4

Q ss_pred             CCCcceEEEeCCCCCCchhhHHHHhhcCCCeEEec-C-CCCC-hhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEcc
Q 028302            9 DKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-V-PISD-VPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFG   84 (210)
Q Consensus         9 ~~~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~-~-~~~~-~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~   84 (210)
                      .|.+++|+++.+. +  ....+.+.+.+ ++.... . +.++ +.+.++++|++++. ..+++++.++++|+||||+..+
T Consensus        20 ~m~~~~vl~~~~~-~--~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~   95 (333)
T 3ba1_A           20 HMEAIGVLMMCPM-S--TYLEQELDKRF-KLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFS   95 (333)
T ss_dssp             --CCCEEEECSCC-C--HHHHHHHHHHS-EEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEESS
T ss_pred             cCCCCEEEEeCCC-C--HHHHHHHHhcC-CEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEEEcC
Confidence            3445688887653 2  23333333333 233221 1 1122 34557899998874 4679999999999999999999


Q ss_pred             ccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC---CcccccccCeEEEEec
Q 028302           85 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGF  161 (210)
Q Consensus        85 aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~~~tvGIiG~  161 (210)
                      +|+|+||++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..   ..+.+++|+||||||+
T Consensus        96 ~G~d~id~~~~~~~gI~v~n~pg~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG~  172 (333)
T 3ba1_A           96 VGLDKVDLIKCEEKGVRVTNTPDV---LTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGL  172 (333)
T ss_dssp             SCCTTBCHHHHHHHTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECC
T ss_pred             ccccccCHHHHHhCCcEEEECCCc---chHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEECC
Confidence            999999999999999999999999   8999999999999999999999999999999963   2467999999999999


Q ss_pred             ChHHHHHHHHhccCCCEEEEEcCCCCCC-----------CcccCceeEEecCCCCCCCCC
Q 028302          162 GNIGVELAKRLRPFGVKIIATKRSWASH-----------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       162 G~IG~~vA~~~~~fg~~V~~~~~~~~~~-----------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      |+||+.+|+++++|||+|++|||++...           .+.++|.++..+|+++ +|+|
T Consensus       173 G~iG~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~-~t~~  231 (333)
T 3ba1_A          173 GRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTP-ETTH  231 (333)
T ss_dssp             SHHHHHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCG-GGTT
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCCh-HHHH
Confidence            9999999999999999999999976531           3567899999999999 8876

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=8.8e-35  Score=248.70  Aligned_cols=197  Identities=20%  Similarity=0.269  Sum_probs=158.6

Q ss_pred             CCCCCCcceEEEeCCCCCCchhhHHHHhhcCCCeEEecCC------CCChhhhcCCceEEEEc-CCCCCHHHHhcC-CCc
Q 028302            6 RSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP------ISDVPDVIANYHLCVVK-TMRLDSNCISRA-NQM   77 (210)
Q Consensus         6 ~~~~~~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~~adv~i~~-~~~~~~~~l~~~-p~L   77 (210)
                      |.+++.+|+|++..+. +  ....+.+.+.. ++++..++      .+++.+.++++|++++. ..+++++.++++ |+|
T Consensus         2 ~~~~~~~~~il~~~~~-~--~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~L   77 (330)
T 2gcg_A            2 SMRPVRLMKVFVTRRI-P--AEGRVALARAA-DCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANL   77 (330)
T ss_dssp             -----CCEEEEESSCC-C--HHHHHHHHHCT-TEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTC
T ss_pred             CCCCCCCCEEEEECCC-C--HHHHHHHHhcC-CceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCc
Confidence            4555667899987643 2  23333333332 34443222      24556778899998874 457999999999 999


Q ss_pred             eEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC-----Ccccccc
Q 028302           78 KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLL  152 (210)
Q Consensus        78 k~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~  152 (210)
                      |||++.++|+|++|++++.++||.|+|++|+   ++.+||||+++++|++.|++..+++.++++.|..     ..+.++.
T Consensus        78 k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~---~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~  154 (330)
T 2gcg_A           78 KVISTMSVGIDHLALDEIKKRGIRVGYTPDV---LTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLT  154 (330)
T ss_dssp             CEEEESSSCCTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCT
T ss_pred             eEEEECCcccccccHHHHHhCCceEEeCCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCC
Confidence            9999999999999999999999999999999   8999999999999999999999999999999964     1357999


Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC---------------CCcccCceeEEecCCCCCCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS---------------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~---------------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      |+||||||+|+||+.+|+++++|||+|++||++...               +.+..+|.++..+|+++ +|+|
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~-~t~~  226 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTP-ATEG  226 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCT-TTTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCCh-HHHH
Confidence            999999999999999999999999999999986531               13467899999999999 8876

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=3.2e-35  Score=253.04  Aligned_cols=194  Identities=18%  Similarity=0.296  Sum_probs=157.0

Q ss_pred             cceEEEeCCCCCCchhhHHHHhhcCCCeEEe-cCCCCChhhhcC-----CceEEEEc-------CCCCCHHHHhcCC-Cc
Q 028302           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVIA-----NYHLCVVK-------TMRLDSNCISRAN-QM   77 (210)
Q Consensus        12 ~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~-----~adv~i~~-------~~~~~~~~l~~~p-~L   77 (210)
                      +|+|+++.+.........+.+.+.+ ++.+. ..+.+++.+.++     ++|+++..       ..++++++++++| +|
T Consensus         3 ~~~vl~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~L   81 (348)
T 2w2k_A            3 RPRVLLLGDPARHLDDLWSDFQQKF-EVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSL   81 (348)
T ss_dssp             CCEEEECSSCCSSCHHHHHHHHHHS-EEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTTC
T ss_pred             CcEEEEECCccccChHHHHHHHhcc-eEEecCCCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccCc
Confidence            5789998763322122233333332 33222 224456666665     88988763       3578999999998 69


Q ss_pred             eEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCC---CCC------Ccc
Q 028302           78 KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK---LGV------PTG  148 (210)
Q Consensus        78 k~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~---w~~------~~~  148 (210)
                      |||+..++|+|+||++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.   |..      ..+
T Consensus        82 k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~  158 (348)
T 2w2k_A           82 KVFAAAGAGFDWLDLDALNERGVAFANSRGA---GDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSA  158 (348)
T ss_dssp             CEEEESSSCCTTBCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred             eEEEECCccccccCHHHHHhCCcEEEECCCC---CcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccC
Confidence            9999999999999999999999999999999   8899999999999999999999999999999   932      246


Q ss_pred             cccccCeEEEEecChHHHHHHHHhc-cCCCEEEEEcCCCCC-------------C---CcccCceeEEecCCCCCCCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWAS-------------H---SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~-~fg~~V~~~~~~~~~-------------~---~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      .+|+|+||||||+|+||+.+|++++ +|||+|++||++...             .   .+..+|.++..+|+++ +|+|
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~-~t~~  236 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMK-LTHH  236 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSG-GGTT
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCCh-HHHH
Confidence            7999999999999999999999999 999999999997642             1   3567899999999999 8886

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=1.9e-35  Score=255.64  Aligned_cols=161  Identities=24%  Similarity=0.326  Sum_probs=144.8

Q ss_pred             CCChhhhcCCceEEEEcC---CCCCHHHHhcCCCceEEEEccccCCccchhHHhhC--CcEEEecCCCCCCCchhHHHHH
Q 028302           46 ISDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRC--GIKVARIPGDVTGNAASCAELT  120 (210)
Q Consensus        46 ~~~~~~~~~~adv~i~~~---~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~--gi~v~~~~~~~~~~a~~vAE~~  120 (210)
                      .+++.+.++++|++++..   ..+++++++.+|+||||++.++|+|+||++++.++  ||.|+|+||+   ++.+||||+
T Consensus        51 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~---~~~~vAE~~  127 (364)
T 2j6i_A           51 NSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGS---NVVSVAEHV  127 (364)
T ss_dssp             TSHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHHTCCCEEEECTTS---SHHHHHHHH
T ss_pred             HHHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHhcCCCEEEEECCCc---CcHHHHHHH
Confidence            356778889999988743   24889999999999999999999999999999998  9999999999   899999999


Q ss_pred             HHHHHHHHhhHHHHHHHHHhCCCCC----CcccccccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCCCC-------
Q 028302          121 IYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWAS-------  188 (210)
Q Consensus       121 l~~~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~~~-------  188 (210)
                      ++++|++.|++..+++.++++.|..    ..+.+|+|+||||||+|+||+.+|+++++|||+ |++||++..+       
T Consensus       128 ~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~  207 (364)
T 2j6i_A          128 VMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKV  207 (364)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHT
T ss_pred             HHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhc
Confidence            9999999999999999999999973    246799999999999999999999999999997 9999987521       


Q ss_pred             ---------CCcccCceeEEecCCCCCCCCC
Q 028302          189 ---------HSQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       189 ---------~~~~~~~~~~~~~Plt~~~T~h  210 (210)
                               +.+.++|.+++.+|+|+ +|+|
T Consensus       208 g~~~~~~l~ell~~aDvV~l~~P~t~-~t~~  237 (364)
T 2j6i_A          208 GARRVENIEELVAQADIVTVNAPLHA-GTKG  237 (364)
T ss_dssp             TEEECSSHHHHHHTCSEEEECCCCST-TTTT
T ss_pred             CcEecCCHHHHHhcCCEEEECCCCCh-HHHH
Confidence                     13568999999999999 9987

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=4.6e-35  Score=250.70  Aligned_cols=190  Identities=27%  Similarity=0.401  Sum_probs=158.1

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEec-CCCCChhhhcCCceEEEE-cCCCCCHHHHhcCCCceEEEEccccCCcc
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVV-KTMRLDSNCISRANQMKLIMQFGVGLEGV   90 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~adv~i~-~~~~~~~~~l~~~p~Lk~i~~~~aG~d~i   90 (210)
                      ++|+++.+. +  ....+.+ +...++++.. .+.+++.+.++++|++++ ...+++++.++.+|+||||+..++|+|++
T Consensus         3 ~~il~~~~~-~--~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   78 (333)
T 2d0i_A            3 PKVGVLLKM-K--REALEEL-KKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNI   78 (333)
T ss_dssp             SEEEECSCC-C--HHHHHHH-HTTSEEEECCSCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCCTTB
T ss_pred             cEEEEECCC-C--HHHHHHH-HhcCCEEEeCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCcccccc
Confidence            578887653 2  2233333 3333444432 233456677899999986 44679999999999999999999999999


Q ss_pred             chhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC----Ccc----cccccCeEEEEecC
Q 028302           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTG----ETLLGKTVFILGFG  162 (210)
Q Consensus        91 d~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~----~~~----~~l~~~tvGIiG~G  162 (210)
                      |++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..    ..+    .+|.|+||||||+|
T Consensus        79 d~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G  155 (333)
T 2d0i_A           79 DLEEATKRGIYVTKVSGL---LSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMG  155 (333)
T ss_dssp             CHHHHHHTTCEEECCCHH---HHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCS
T ss_pred             cHHHHHhCCcEEEeCCCc---ChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccC
Confidence            999999999999999998   8899999999999999999999999999999964    134    78999999999999


Q ss_pred             hHHHHHHHHhccCCCEEEEEcCCCCCC--------------CcccCceeEEecCCCCCCCCC
Q 028302          163 NIGVELAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       163 ~IG~~vA~~~~~fg~~V~~~~~~~~~~--------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +||+.+|+++++|||+|++|||+....              .+..+|.++..+|+++ +|+|
T Consensus       156 ~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~-~t~~  216 (333)
T 2d0i_A          156 AIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTR-DTYH  216 (333)
T ss_dssp             HHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCT-TTTT
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCCh-HHHH
Confidence            999999999999999999999986531              3567899999999999 8986

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=1.5e-34  Score=247.57  Aligned_cols=190  Identities=23%  Similarity=0.317  Sum_probs=157.0

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEecC----CCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEEccccC
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGL   87 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~p~Lk~i~~~~aG~   87 (210)
                      ++|++..+. +  ....+.+ +...++.+...    +.+++.+.++++|+++++. .+++++.++.+|+||||++.++|+
T Consensus         3 ~~il~~~~~-~--~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   78 (334)
T 2dbq_A            3 PKVFITREI-P--EVGIKML-EDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGY   78 (334)
T ss_dssp             CEEEESSCC-C--HHHHHHH-HTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCC
T ss_pred             cEEEEecCC-C--HHHHHHH-HhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCccc
Confidence            578886543 2  2333333 33224443222    2345567789999998753 579999999999999999999999


Q ss_pred             CccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCC----C-----CcccccccCeEEE
Q 028302           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG----V-----PTGETLLGKTVFI  158 (210)
Q Consensus        88 d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~----~-----~~~~~l~~~tvGI  158 (210)
                      |++|++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|.    .     ..+.++.|+||||
T Consensus        79 d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgI  155 (334)
T 2dbq_A           79 DNIDIEEATKRGIYVTNTPDV---LTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGI  155 (334)
T ss_dssp             TTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEE
T ss_pred             ccccHHHHHhCCCEEEeCCCc---CHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEE
Confidence            999999999999999999999   899999999999999999999999999999995    1     1357899999999


Q ss_pred             EecChHHHHHHHHhccCCCEEEEEcCCCCCC--------------CcccCceeEEecCCCCCCCCC
Q 028302          159 LGFGNIGVELAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       159 iG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~--------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      ||+|.||+.+|+++++|||+|++|||+....              .+..+|.++..+|+++ +|+|
T Consensus       156 IG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~-~t~~  220 (334)
T 2dbq_A          156 IGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTR-ETYH  220 (334)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCT-TTTT
T ss_pred             EccCHHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCCh-HHHH
Confidence            9999999999999999999999999976431              3567899999999999 9876

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=1.8e-34  Score=260.55  Aligned_cols=192  Identities=23%  Similarity=0.340  Sum_probs=160.0

Q ss_pred             CcceEEEeCCCCCCchhhHHHHhhcCCCeEEec-CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEccccCC
Q 028302           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE   88 (210)
Q Consensus        11 ~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~aG~d   88 (210)
                      .+|+|+++.+..+.   .. +.++...++.+.. .+.+++.+.++++|+++++ ..++++++++++|+||||+..++|+|
T Consensus         3 ~~~~vl~~~~~~~~---~~-~~l~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   78 (529)
T 1ygy_A            3 SLPVVLIADKLAPS---TV-AALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLD   78 (529)
T ss_dssp             CCCEEEECSSCCGG---GG-TTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCT
T ss_pred             CCcEEEEeCCCCHH---HH-HHHhcCceEEEcCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCcCcC
Confidence            35789998764322   11 2233323343322 2345667778999999875 46799999999999999999999999


Q ss_pred             ccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC--cccccccCeEEEEecChHHH
Q 028302           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGV  166 (210)
Q Consensus        89 ~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~~~tvGIiG~G~IG~  166 (210)
                      ++|++++.++||.|+|+|++   |+.+||||+++++|++.|+++++++.++++.|...  .+.+|+|+||||||+|+||+
T Consensus        79 ~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIIG~G~IG~  155 (529)
T 1ygy_A           79 NVDVDAATARGVLVVNAPTS---NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQ  155 (529)
T ss_dssp             TBCHHHHHHTTCEEECCTTS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHH
T ss_pred             ccCHhHHHhCCeEEEECCCc---chHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccccCCCEEEEEeeCHHHH
Confidence            99999999999999999998   89999999999999999999999999999999753  46899999999999999999


Q ss_pred             HHHHHhccCCCEEEEEcCCCCCC--------------CcccCceeEEecCCCCCCCCC
Q 028302          167 ELAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       167 ~vA~~~~~fg~~V~~~~~~~~~~--------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      .+|+++++|||+|++|||+....              .+..+|.++..+|+++ +|+|
T Consensus       156 ~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~-~t~~  212 (529)
T 1ygy_A          156 LVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTP-ETAG  212 (529)
T ss_dssp             HHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCST-TTTT
T ss_pred             HHHHHHHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCch-HHHH
Confidence            99999999999999999976321              3557899999999999 8876

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.3e-34  Score=244.90  Aligned_cols=153  Identities=20%  Similarity=0.317  Sum_probs=137.5

Q ss_pred             hhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhh
Q 028302           51 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK  130 (210)
Q Consensus        51 ~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~  130 (210)
                      +.++++|+++++  ..+.+.++++|+||||++.++|+|++|+++ .++||.|+|++|+   ++.+||||+++++|++.|+
T Consensus        27 ~~~~~~d~~i~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~-~~~gi~v~~~~~~---~~~~vAE~~~~~~L~~~R~  100 (303)
T 1qp8_A           27 GDLGNVEAALVS--RITAEELAKMPRLKFIQVVTAGLDHLPWES-IPPHVTVAGNAGS---NADAVAEFALALLLAPYKR  100 (303)
T ss_dssp             SCCTTBCCCCBS--CCCHHHHHHCTTCCCEEBSSSCCTTSCCTT-SCTTSCEECCCSS---SHHHHHHHHHHHHHHHHTT
T ss_pred             hhhCCCEEEEEC--CCCHHHHhhCCCCcEEEECCcCcccccHHH-HhcCCEEEECCCC---CchHHHHHHHHHHHHHHhC
Confidence            556789988864  356799999999999999999999999987 4799999999998   8899999999999999999


Q ss_pred             HHHHHHHHHhCCCCCC-cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC----------CCcccCceeEE
Q 028302          131 QNEMRMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS----------HSQVSCQSSGM  199 (210)
Q Consensus       131 ~~~~~~~~~~~~w~~~-~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~----------~~~~~~~~~~~  199 (210)
                      +..+++.++++.|... ...++.|+||||||+|+||+.+|+++++|||+|++|||++.+          +.+.++|.+++
T Consensus       101 ~~~~~~~~~~g~w~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~~l~ell~~aDvV~l  180 (303)
T 1qp8_A          101 IIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVC  180 (303)
T ss_dssp             HHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEE
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCccccCcccCCCHHHHHhhCCEEEE
Confidence            9999999999999754 445899999999999999999999999999999999987641          14668899999


Q ss_pred             ecCCCCCCCCC
Q 028302          200 LGPLSDGETHH  210 (210)
Q Consensus       200 ~~Plt~~~T~h  210 (210)
                      .+|+|+ +|+|
T Consensus       181 ~~P~~~-~t~~  190 (303)
T 1qp8_A          181 ALPLNK-HTRG  190 (303)
T ss_dssp             CCCCST-TTTT
T ss_pred             eCcCch-HHHH
Confidence            999999 9987

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=5.9e-34  Score=239.19  Aligned_cols=149  Identities=23%  Similarity=0.297  Sum_probs=131.5

Q ss_pred             hhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhh
Q 028302           51 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK  130 (210)
Q Consensus        51 ~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~  130 (210)
                      +.++++|++++...+     + ++|+||||++.++|+|+||++++.++++.++| +|.   |+.+||||+++++|++.|+
T Consensus        30 ~~~~~ad~li~~~~~-----~-~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~-~~~---~~~~vAE~~~~~~L~~~R~   99 (290)
T 3gvx_A           30 PDYYDAEAQVIKDRY-----V-LGKRTKMIQAISAGVDHIDVNGIPENVVLCSN-AGA---YSISVAEHAFALLLAHAKN   99 (290)
T ss_dssp             TSCCCCSEEEESSCC-----C-CCSSCCEEEECSSCCTTSCGGGSCTTSEEECC-HHH---HHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhhhhhhhhhhh-----h-hhhhhHHHHHHhcCCceeecCCCccceEEeec-CCc---ceeeHHHHHHHHHHHHHHh
Confidence            667899999984333     2 68999999999999999999998887666555 465   8899999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC-----------CcccCceeEE
Q 028302          131 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----------SQVSCQSSGM  199 (210)
Q Consensus       131 ~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~-----------~~~~~~~~~~  199 (210)
                      +..+++.++++.|.....++|+|+||||||+|+||+.+|+++++|||+|++|||++++.           .+.++|.+++
T Consensus       100 ~~~~~~~~~~g~w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l  179 (290)
T 3gvx_A          100 ILENNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLI  179 (290)
T ss_dssp             HHHHHHHHHTTCCCCCCCCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEE
T ss_pred             hhhhhhHhhhcccccCCceeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEE
Confidence            99999999999998765688999999999999999999999999999999999986432           4567899999


Q ss_pred             ecCCCCCCCCC
Q 028302          200 LGPLSDGETHH  210 (210)
Q Consensus       200 ~~Plt~~~T~h  210 (210)
                      .+|+|+ +|+|
T Consensus       180 ~~P~t~-~t~~  189 (290)
T 3gvx_A          180 AIPLTD-KTRG  189 (290)
T ss_dssp             CCCCCT-TTTT
T ss_pred             Eeeccc-cchh
Confidence            999999 9986

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=2.6e-33  Score=242.38  Aligned_cols=173  Identities=21%  Similarity=0.330  Sum_probs=143.5

Q ss_pred             CcceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEEccccCCc
Q 028302           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEG   89 (210)
Q Consensus        11 ~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~p~Lk~i~~~~aG~d~   89 (210)
                      +||||++.... +    +..++++.+.++.+.. ..+...+.++++|+++++. .++++++++ .++||||++.++|+|+
T Consensus         2 ~mmkIl~~~~~-p----~~~~~~~~~~~v~~~~-~~~~~~~~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~D~   74 (381)
T 3oet_A            2 NAMKILVDENM-P----YARELFSRLGEVKAVP-GRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGTDH   74 (381)
T ss_dssp             CCCEEEEETTS-T----THHHHHTTSSEEEEEC-C---CHHHHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCCTT
T ss_pred             CceEEEECCCC-c----HHHHHHhhCCcEEEeC-CCCCCHHHHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEccccccc
Confidence            35899997653 2    2356676665555432 1222346689999999864 569999999 6779999999999999


Q ss_pred             cchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHH
Q 028302           90 VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELA  169 (210)
Q Consensus        90 id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA  169 (210)
                      ||++++.++||.|+|+||+   |+.+||||+++++|++.|+.                +.+|+|+||||||+|+||+.+|
T Consensus        75 iD~~~~~~~gI~v~n~pg~---~~~~VAE~~l~~lL~l~r~~----------------g~~l~gktvGIIGlG~IG~~vA  135 (381)
T 3oet_A           75 VDEAWLKQAGIGFSAAPGC---NAIAVVEYVFSALLMLAERD----------------GFSLRDRTIGIVGVGNVGSRLQ  135 (381)
T ss_dssp             BCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHHT----------------TCCGGGCEEEEECCSHHHHHHH
T ss_pred             cCHHHHHhCCEEEEECCCc---CcchhHHHHHHHHHHHHHhc----------------CCccCCCEEEEEeECHHHHHHH
Confidence            9999999999999999999   99999999999999999863                4789999999999999999999


Q ss_pred             HHhccCCCEEEEEcCCCCC-----------CCcccCceeEEecCCCCCC----CCC
Q 028302          170 KRLRPFGVKIIATKRSWAS-----------HSQVSCQSSGMLGPLSDGE----THH  210 (210)
Q Consensus       170 ~~~~~fg~~V~~~~~~~~~-----------~~~~~~~~~~~~~Plt~~~----T~h  210 (210)
                      +++++|||+|++|||+...           +.+.++|.+++.+|+|+ +    |+|
T Consensus       136 ~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~-~g~~~T~~  190 (381)
T 3oet_A          136 TRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYK-DGPYKTLH  190 (381)
T ss_dssp             HHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCC-SSTTCCTT
T ss_pred             HHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCc-cccccchh
Confidence            9999999999999974211           14668999999999999 9    987

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.97  E-value=2.9e-31  Score=230.00  Aligned_cols=171  Identities=18%  Similarity=0.304  Sum_probs=139.7

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEccccCCccc
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD   91 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~aG~d~id   91 (210)
                      |||++.... +.    ..+.++...++.+... .+...+.++++|+++++ ...+++++++ +|+||||++.++|+|++|
T Consensus         1 mkil~~~~~-~~----~~~~~~~~~~v~~~~~-~~~~~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~iD   73 (380)
T 2o4c_A            1 MRILADENI-PV----VDAFFADQGSIRRLPG-RAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDHLD   73 (380)
T ss_dssp             CEEEEETTC-TT----HHHHHGGGSEEEEECG-GGCSTTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTTBC
T ss_pred             CEEEEecCc-hH----HHHHHHhCCcEEEecC-CcCChHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccchhh
Confidence            588887543 22    2445555444443321 12223556899999885 3578999999 999999999999999999


Q ss_pred             hhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHH
Q 028302           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR  171 (210)
Q Consensus        92 ~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~  171 (210)
                      .+++.++||.|+|+||+   |+.+||||+++++|++.|+.                +.+|+|+||||||+|+||+.+|++
T Consensus        74 ~~~~~~~gI~v~n~pg~---~~~~vAE~~l~~lL~l~r~~----------------~~~l~g~tvGIIGlG~IG~~vA~~  134 (380)
T 2o4c_A           74 LDYFAEAGIAWSSAPGC---NARGVVDYVLGCLLAMAEVR----------------GADLAERTYGVVGAGQVGGRLVEV  134 (380)
T ss_dssp             HHHHHHHTCEEECCTTT---THHHHHHHHHHHHHHHHHHH----------------TCCGGGCEEEEECCSHHHHHHHHH
T ss_pred             HHHHHhCCCEEEeCCCc---ChHHHHHHHHHHHHHHHhhh----------------hcccCCCEEEEEeCCHHHHHHHHH
Confidence            99999999999999998   89999999999999999973                368999999999999999999999


Q ss_pred             hccCCCEEEEEcCCCCC-----------CCcccCceeEEecCCCCCC----CCC
Q 028302          172 LRPFGVKIIATKRSWAS-----------HSQVSCQSSGMLGPLSDGE----THH  210 (210)
Q Consensus       172 ~~~fg~~V~~~~~~~~~-----------~~~~~~~~~~~~~Plt~~~----T~h  210 (210)
                      +++|||+|++|||+...           +.+.++|.++..+|+|+ +    |+|
T Consensus       135 l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~-~g~~~T~~  187 (380)
T 2o4c_A          135 LRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNR-DGEHPTRH  187 (380)
T ss_dssp             HHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCS-SSSSCCTT
T ss_pred             HHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCcc-ccccchhh
Confidence            99999999999975321           13568899999999999 9    987

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.90  E-value=6e-24  Score=178.60  Aligned_cols=167  Identities=14%  Similarity=0.151  Sum_probs=130.3

Q ss_pred             CcceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCC-----------CChhhhcCCceEEEEc-----------------
Q 028302           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPI-----------SDVPDVIANYHLCVVK-----------------   62 (210)
Q Consensus        11 ~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------~~~~~~~~~adv~i~~-----------------   62 (210)
                      ..|+|++...... ...+.+.+.+...++.+...+.           +++.+.++++|+++.+                 
T Consensus         4 ~~m~i~v~~~~~~-~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            4 TGKHVVIIGGDAR-QLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             TTCEEEEECBCHH-HHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             cCcEEEEECCCHH-HHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccccC
Confidence            3468998875432 2444555555445555543322           3456667899999874                 


Q ss_pred             CCCCCHHHHhcCCCceEEEEccccCCccch-hHHhhCCcEEEecC------CCCCCCchhHHHHHHHHHHHHHhhHHHHH
Q 028302           63 TMRLDSNCISRANQMKLIMQFGVGLEGVDI-NAATRCGIKVARIP------GDVTGNAASCAELTIYLMLGLLRKQNEMR  135 (210)
Q Consensus        63 ~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~-~~~~~~gi~v~~~~------~~~~~~a~~vAE~~l~~~L~~~R~~~~~~  135 (210)
                      ..+++++.++.+|+||+|+   +|+|++|+ +++.++||.|+|++      ++   ++.+|||++++++|..        
T Consensus        83 ~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~---~~~svae~a~~~~l~~--------  148 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIY---NSIPTAEGTIMMAIQH--------  148 (293)
T ss_dssp             CCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHH---HHHHHHHHHHHHHHHH--------
T ss_pred             CccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeee---ccHhHHHHHHHHHHHh--------
Confidence            1247899999999999997   89999998 88999999999998      66   7899999999998863        


Q ss_pred             HHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC------------------CCcccCcee
Q 028302          136 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS------------------HSQVSCQSS  197 (210)
Q Consensus       136 ~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~------------------~~~~~~~~~  197 (210)
                                 .+.++.|+||||||+|+||+.+|+++++|||+|++|||++.+                  +.+.++|.+
T Consensus       149 -----------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvV  217 (293)
T 3d4o_A          149 -----------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVC  217 (293)
T ss_dssp             -----------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEE
T ss_pred             -----------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEE
Confidence                       146799999999999999999999999999999999997532                  124567888


Q ss_pred             EEecCC
Q 028302          198 GMLGPL  203 (210)
Q Consensus       198 ~~~~Pl  203 (210)
                      ++.+|+
T Consensus       218 i~~~p~  223 (293)
T 3d4o_A          218 INTIPA  223 (293)
T ss_dssp             EECCSS
T ss_pred             EECCCh
Confidence            888886

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.84  E-value=4.7e-21  Score=161.38  Aligned_cols=170  Identities=14%  Similarity=0.136  Sum_probs=124.2

Q ss_pred             CcceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCC-----------ChhhhcCCceEEEE----c-----------CC
Q 028302           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPIS-----------DVPDVIANYHLCVV----K-----------TM   64 (210)
Q Consensus        11 ~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~~~adv~i~----~-----------~~   64 (210)
                      ..|+|++...... .....+.+.+...++.+..++.+           ++.+.++++|+++.    .           ..
T Consensus         6 ~~mki~v~~~~~~-~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            6 TGLKIAVIGGDAR-QLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CSCEEEEESBCHH-HHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSS
T ss_pred             cCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccC
Confidence            3578999976432 24445555555555655443332           24566789999887    2           24


Q ss_pred             C--CCHHHHhcCCCceEEEEccccCCccc-hhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhC
Q 028302           65 R--LDSNCISRANQMKLIMQFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK  141 (210)
Q Consensus        65 ~--~~~~~l~~~p~Lk~i~~~~aG~d~id-~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~  141 (210)
                      +  ++++.++.+|++|+|+   +|+|++| ++++.++||.|+|++++     +++         ++.|+++..     ++
T Consensus        85 ~~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~-----~~v---------~~~r~~~~~-----~g  142 (300)
T 2rir_A           85 EVVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFER-----DDI---------AIYNSIPTV-----EG  142 (300)
T ss_dssp             CEECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGS-----HHH---------HHHHHHHHH-----HH
T ss_pred             CccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCC-----Cce---------EEEcCccHH-----HH
Confidence            4  7899999999999988   8999999 99999999999999987     333         334555443     23


Q ss_pred             CCC---CCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC------------------CCcccCceeEEe
Q 028302          142 KLG---VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS------------------HSQVSCQSSGML  200 (210)
Q Consensus       142 ~w~---~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~------------------~~~~~~~~~~~~  200 (210)
                      .|.   ...+.++.|+||||||+|.||+.+|+++++|||+|++|||++.+                  +.+..+|.++..
T Consensus       143 ~~~~~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~  222 (300)
T 2rir_A          143 TIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINT  222 (300)
T ss_dssp             HHHHHHHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEEC
T ss_pred             HHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEEC
Confidence            342   12357899999999999999999999999999999999997521                  124567888888


Q ss_pred             cCC
Q 028302          201 GPL  203 (210)
Q Consensus       201 ~Pl  203 (210)
                      +|+
T Consensus       223 ~p~  225 (300)
T 2rir_A          223 IPS  225 (300)
T ss_dssp             CSS
T ss_pred             CCh
Confidence            886

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.60  E-value=9.9e-17  Score=142.32  Aligned_cols=100  Identities=16%  Similarity=0.187  Sum_probs=89.4

Q ss_pred             CCCceEEE-EccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccc
Q 028302           74 ANQMKLIM-QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL  152 (210)
Q Consensus        74 ~p~Lk~i~-~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~  152 (210)
                      +|+++.|. ..++|+|++  +.+.++||.++|++++   |+ +|||       +++|++....+.++++ |.+..+.++.
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~v---n~-sVae-------~l~r~~~~~~~~l~~g-w~r~~~~~l~  256 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINV---ND-AVTK-------QKYDNVYGCRHSLPDG-LMRATDFLIS  256 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEEC---TT-SHHH-------HTTHHHHHHHHHHHHH-HHHHHCCCCT
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCc---cH-HHHH-------HHHhchHhHHHHHhhh-hhhccccccC
Confidence            37999999 889999998  6789999999999998   77 9999       5678888888888888 8665567899


Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      |+||||||+|.||+.+|+++++|||+|++||+++.
T Consensus       257 GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~  291 (479)
T 1v8b_A          257 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI  291 (479)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChh
Confidence            99999999999999999999999999999999863

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.60  E-value=1.5e-16  Score=141.56  Aligned_cols=99  Identities=17%  Similarity=0.209  Sum_probs=86.2

Q ss_pred             CCceEEE-EccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCccccccc
Q 028302           75 NQMKLIM-QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (210)
Q Consensus        75 p~Lk~i~-~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~  153 (210)
                      |+++.|. ..++|+|++  +++.++||.++|++++   |+ +|||+       ++|++....+.+..+ |.+..+.++.|
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~v---n~-sVae~-------l~r~~~~~~~~l~~g-w~~~~g~~L~G  277 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNV---ND-SVTKS-------KFDNLYGCRESLVDG-IKRATDVMIAG  277 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEEC---TT-SHHHH-------HHHHHHHHHTTHHHH-HHHHHCCCCTT
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCc---cH-HHHHH-------HHhhhHhhhhhhhhh-hhhccccccCC
Confidence            8899998 789999998  5789999999999998   87 99994       457777766666666 76555678999


Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +||||||+|.||+.+|+++++|||+|++||+++.
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~  311 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPI  311 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            9999999999999999999999999999999763

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.44  E-value=2.5e-13  Score=117.69  Aligned_cols=127  Identities=13%  Similarity=0.049  Sum_probs=97.5

Q ss_pred             hhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEE----------ecCCCCCCCchhHHHHH
Q 028302           51 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVA----------RIPGDVTGNAASCAELT  120 (210)
Q Consensus        51 ~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~----------~~~~~~~~~a~~vAE~~  120 (210)
                      +.+.++|+++....+++.+.....++..++.....++|...++.+.++||.+.          |+|.+     .++||++
T Consensus        63 ~~~~~adii~~vk~p~~~e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~-----s~~ae~a  137 (377)
T 2vhw_A           63 QVWADADLLLKVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLL-----APMSEVA  137 (377)
T ss_dssp             HHHHHCSEEECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT-----HHHHHHH
T ss_pred             HHhccCCEEEEeCCCChHHHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCcccc-----CchHHHH
Confidence            44557898876556677777776788888888888899999999999999998          55555     6788999


Q ss_pred             HHHHHHHH-hhHHHHHHHHHhCCCCC-CcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          121 IYLMLGLL-RKQNEMRMAIEQKKLGV-PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       121 l~~~L~~~-R~~~~~~~~~~~~~w~~-~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++.+.+. |++.+    ...++|.. ....++.|+||+|+|+|.||+.+|+++++||++|+++|+++
T Consensus       138 g~~a~~~a~r~l~~----~~~g~~~~~~~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          138 GRLAAQVGAYHLMR----TQGGRGVLMGGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             HHHHHHHHHHHTSG----GGTSCCCCTTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             HHHHHHHHHHHHHH----hcCCCcccccCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            96555555 66632    23343321 12357999999999999999999999999999999999864

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.24  E-value=1.1e-11  Score=108.13  Aligned_cols=123  Identities=11%  Similarity=0.061  Sum_probs=87.7

Q ss_pred             ceEEEEcCCCCCHHHHhcC-CCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHH
Q 028302           56 YHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM  134 (210)
Q Consensus        56 adv~i~~~~~~~~~~l~~~-p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~  134 (210)
                      +|+++... .++.+.++.+ |++++|...+.|+|+.+++.+.++||.+.+.        +.|+|++..+.|.+++.+...
T Consensus        73 adiil~vk-~p~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~~--------e~v~~~~~a~~l~~l~~~a~~  143 (401)
T 1x13_A           73 SEIILKVN-APLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAM--------DSVPRISRAQSLDALSSMANI  143 (401)
T ss_dssp             SSEEECSS-CCCHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEEG--------GGCCCSGGGGGGCHHHHHHHH
T ss_pred             CCeEEEeC-CCCHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEEe--------ehhhhhhhhcccchHHHHHHH
Confidence            89877543 3457778887 7999999999999999999999999999753        445555544432222222221


Q ss_pred             --HHHHHhC-----CCCCCc---ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          135 --RMAIEQK-----KLGVPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       135 --~~~~~~~-----~w~~~~---~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                        ...++.+     .|....   ..++.+++|+|+|+|.||+.+++.+++||++|+++|+++.
T Consensus       144 ag~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          144 AGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             HHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             HHHHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence              1222222     221111   1157899999999999999999999999999999998754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.19  E-value=2.8e-11  Score=104.97  Aligned_cols=131  Identities=12%  Similarity=0.099  Sum_probs=90.0

Q ss_pred             hhcCCceEEEEcCCCC----CHHHHhcCC-CceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHH
Q 028302           51 DVIANYHLCVVKTMRL----DSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML  125 (210)
Q Consensus        51 ~~~~~adv~i~~~~~~----~~~~l~~~p-~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L  125 (210)
                      +.++++|+++....++    +++.++.++ ++++|.....+.|+.+++.+.++||.+++..-. +   +.+++..+. +|
T Consensus        63 ~~~~~adiil~v~~p~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~e~~-~---~~~~~~~l~-~l  137 (384)
T 1l7d_A           63 QALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELM-P---RISRAQSMD-IL  137 (384)
T ss_dssp             HHHSSCSEEEEEECCCCGGGSCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEGGGC-C---CSGGGGGGC-HH
T ss_pred             hhhcCCCEEEEecCcccccCCHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEeccc-c---ccccccccc-hh
Confidence            4567899988755555    678888886 799999999999999999999999999974221 1   111111221 22


Q ss_pred             HHHhhHHHHHHHHHh-----CCCCCC---cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          126 GLLRKQNEMRMAIEQ-----KKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       126 ~~~R~~~~~~~~~~~-----~~w~~~---~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +..+.+. .+..+..     ++|...   ...++.+++|+|+|+|.||+.+++.+++||++|+++|+++.
T Consensus       138 ~~~a~~a-g~~av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          138 SSQSNLA-GYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             HHHHHHH-HHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             hHHHHHH-HHHHHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            2222221 1112221     222211   11478999999999999999999999999999999998764

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.15  E-value=5.2e-12  Score=112.67  Aligned_cols=99  Identities=17%  Similarity=0.201  Sum_probs=76.4

Q ss_pred             CCceEE-EEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCccccccc
Q 028302           75 NQMKLI-MQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (210)
Q Consensus        75 p~Lk~i-~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~  153 (210)
                      ++++-+ -..++|+|++  ..+.++|+.++|++++   |+ +|||+       .+|+++...+....+ |....+..+.|
T Consensus       209 ~~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~v---n~-sVae~-------~~r~l~~~~~s~~~g-~~r~~~~~l~G  274 (494)
T 3ce6_A          209 ESVKGVTEETTTGVLRL--YQFAAAGDLAFPAINV---ND-SVTKS-------KFDNKYGTRHSLIDG-INRGTDALIGG  274 (494)
T ss_dssp             HHCCCEEECSHHHHHHH--HHHHHTTCCCSCEEEC---TT-SHHHH-------TTHHHHHHHHHHHHH-HHHHHCCCCTT
T ss_pred             cCeEEEEEEeCCChhHH--HHHHHcCCEEEecCCc---cH-HHHHH-------HHhhhhhhhhhhhHH-HHhccCCCCCc
Confidence            344444 4789999998  5688999999999998   77 99994       345555444443333 43323347899


Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++|+|+|+|.||+.+|+++++||++|+++|+++.
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~  308 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPI  308 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            9999999999999999999999999999998753

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.02  E-value=1.7e-09  Score=93.17  Aligned_cols=127  Identities=14%  Similarity=0.074  Sum_probs=88.9

Q ss_pred             hcCCceEEEEcCCCCCHHHHhcC-CCceEEEEccccCCccchhHHhhCCcEEE---ecCCCCCCCc----hhHHHHHH--
Q 028302           52 VIANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVA---RIPGDVTGNA----ASCAELTI--  121 (210)
Q Consensus        52 ~~~~adv~i~~~~~~~~~~l~~~-p~Lk~i~~~~aG~d~id~~~~~~~gi~v~---~~~~~~~~~a----~~vAE~~l--  121 (210)
                      .+ ++|+++....++ .+.++.+ |++++|.....+.|..+++.+.++||.+.   +.+.. . ..    .+++|.+-  
T Consensus        63 ~~-~ad~il~vk~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~-~-~~~~~l~~~s~~ag~~  138 (369)
T 2eez_A           63 AW-GAEMVVKVKEPL-PEEYGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLP-D-GTLPLLVPMSEVAGRM  138 (369)
T ss_dssp             HT-TSSEEECSSCCC-GGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCT-T-CCCTTTHHHHHHHHHH
T ss_pred             ee-cCCEEEEECCCC-HHHHhhcCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccc-c-CCeeecccchHHHHHH
Confidence            45 799888654555 4446766 78999999999999999999999999998   44432 1 11    45566554  


Q ss_pred             HHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          122 YLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       122 ~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.++++ +.+.....  .++.|... ..++.+++|+|+|.|.||+.+|+.++++|++|+++|+++
T Consensus       139 av~~a~-~~l~~~~~--g~~~~~~~-~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          139 APQVGA-QFLEKPKG--GRGVLLGG-VPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             HHHHHH-HHTSGGGT--SCCCCTTC-BTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             HHHHHH-HHHHHhcC--CCceecCC-CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            322222 22222110  11123322 357999999999999999999999999999999999874

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.93  E-value=1.1e-09  Score=95.96  Aligned_cols=96  Identities=19%  Similarity=0.224  Sum_probs=64.5

Q ss_pred             CceEEE-EccccCCccc-hhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCccccccc
Q 028302           76 QMKLIM-QFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (210)
Q Consensus        76 ~Lk~i~-~~~aG~d~id-~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~  153 (210)
                      +++-+. -.++|+.++. .....+.+|+|.|+++.   ......+...+..-++...+.+   .         .+.++.|
T Consensus       147 ~i~G~~EeTttGv~rL~~~~~~g~L~iPVinvnds---vtk~~~Dn~~Gt~~slldgi~r---a---------tg~~L~G  211 (436)
T 3h9u_A          147 KIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDS---VTKSKFDNLYGCRESLVDGIKR---A---------TDVMIAG  211 (436)
T ss_dssp             TCCCEEECSHHHHHHHHHHHHHTCCCSCEEECTTS---HHHHTTHHHHHHHHHHHHHHHH---H---------HCCCCTT
T ss_pred             hccceeeccCcChHHHHHHHHcCCCCCceEeechh---hhhhhhhccccchHHHHHHHHH---h---------cCCcccC
Confidence            444433 4567776643 22344689999999876   3344333333322222222211   1         2578999


Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +||||+|+|+||+.+|++|++|||+|+++|+++
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            999999999999999999999999999999875

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.73  E-value=3.9e-10  Score=98.38  Aligned_cols=107  Identities=19%  Similarity=0.312  Sum_probs=86.5

Q ss_pred             CCceEEEEccccCCccchhHHh-----hCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC---
Q 028302           75 NQMKLIMQFGVGLEGVDINAAT-----RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---  146 (210)
Q Consensus        75 p~Lk~i~~~~aG~d~id~~~~~-----~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---  146 (210)
                      +.+++|+..++|+|++++....     ++++.+++.+|.   . .+++++.+..++.+.|++...... ..+.|...   
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~---~-~~~~~~~~~~a~~~~k~v~~~~~~-~~~~~s~a~~a  154 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT---L-DEALKIVFRRAINLGKRAREETRI-SEGAVSIGSAA  154 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC---C-CHHHHHHHHHHHHHHHHHHHHSST-TCSCCSHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC---c-hHHHHHHHHHHhhhhccCcchhhh-cCCCccHHHHH
Confidence            4688899999999999988776     788988988876   2 679999999999999988654322 23344310   


Q ss_pred             --c----ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          147 --T----GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       147 --~----~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                        .    ..++.|++|+|+|+|.||+.+++.++.+|+ +|+++||+.
T Consensus       155 v~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          155 VELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             HHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             HHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence              1    114789999999999999999999999999 999999975

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.69  E-value=3.1e-08  Score=86.87  Aligned_cols=96  Identities=14%  Similarity=0.156  Sum_probs=60.4

Q ss_pred             CceEEE-EccccCCccc-hhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCccccccc
Q 028302           76 QMKLIM-QFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (210)
Q Consensus        76 ~Lk~i~-~~~aG~d~id-~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~  153 (210)
                      +++-+. -.++|+-++- ....-...+++.|+.++       +..+-+-........+......        ..+..+.|
T Consensus       183 ~i~G~~EeTtTGv~rL~~m~~~g~L~~PvinVnds-------~tK~~fDn~yG~~eslvdgI~R--------atg~~L~G  247 (464)
T 3n58_A          183 AIKGVTEETTTGVNRLYQLQKKGLLPFPAINVNDS-------VTKSKFDNKYGCKESLVDGIRR--------GTDVMMAG  247 (464)
T ss_dssp             HCCEEEECSHHHHHHHHHHHHHTCCCSCEEECTTS-------HHHHTTHHHHHHHHHHHHHHHH--------HHCCCCTT
T ss_pred             hccceeeccccchHHHHHHHHcCCCCCCEEeeccH-------hhhhhhhhhhcchHHHHHHHHH--------hcCCcccC
Confidence            344443 4466666542 11222457999998776       3333222222222221111110        02578999


Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |||||+|+|.||+.+|+++++|||+|+++|+.+
T Consensus       248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            999999999999999999999999999998754

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=98.64  E-value=8.5e-09  Score=90.24  Aligned_cols=38  Identities=47%  Similarity=0.720  Sum_probs=35.1

Q ss_pred             ccc-cccCeEEEEecChHHHHHHHHhcc-CCCEEEEEcCC
Q 028302          148 GET-LLGKTVFILGFGNIGVELAKRLRP-FGVKIIATKRS  185 (210)
Q Consensus       148 ~~~-l~~~tvGIiG~G~IG~~vA~~~~~-fg~~V~~~~~~  185 (210)
                      +.+ |+|+||||+|+|+||+.+|+++++ |||+|++++++
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~  245 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS  245 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            466 999999999999999999999999 99999999644

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.58  E-value=7.6e-08  Score=84.09  Aligned_cols=96  Identities=18%  Similarity=0.228  Sum_probs=60.2

Q ss_pred             CceEEE-EccccCCccc-hhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCccccccc
Q 028302           76 QMKLIM-QFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (210)
Q Consensus        76 ~Lk~i~-~~~aG~d~id-~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~  153 (210)
                      +++-+. -.++|+-++- ....-+..++|.|++++.+   .+.-+-..+.--++...+.+            ..+..+.|
T Consensus       156 ~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~vnds~t---K~~fDn~yGt~~s~~~gi~r------------at~~~L~G  220 (435)
T 3gvp_A          156 KIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVT---KQKFDNLYCCRESILDGLKR------------TTDMMFGG  220 (435)
T ss_dssp             TCCEEEECCHHHHHHHTCC--CCCCCSCEEECTTCHH---HHHHHTHHHHHHHHHHHHHH------------HHCCCCTT
T ss_pred             hcceeEeccchhHHHHHHHHHcCCCCCCEEEecchhh---hhhhhhhhhhHHHHHHHHHH------------hhCceecC
Confidence            444443 4466665532 1112246799999988733   33222111111111111111            02568999


Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +||+|+|+|.||+.+|++|++|||+|+++|+++
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            999999999999999999999999999999865

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=98.23  E-value=1.9e-06  Score=73.73  Aligned_cols=37  Identities=27%  Similarity=0.437  Sum_probs=35.2

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +|.||||+|+|+|+||+.+|+++++|||+|+++|++.
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~  208 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDT  208 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            7999999999999999999999999999999999763

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=98.07  E-value=3.2e-06  Score=70.46  Aligned_cols=70  Identities=19%  Similarity=0.151  Sum_probs=47.2

Q ss_pred             HHHHHHHHhCCCCCCcccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCCC---CcccCceeEEecCCC
Q 028302          132 NEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH---SQVSCQSSGMLGPLS  204 (210)
Q Consensus       132 ~~~~~~~~~~~w~~~~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~~---~~~~~~~~~~~~Plt  204 (210)
                      +.+..+++++.|.....   ..++||||| +|.||..+|+.++..|.+|++||++....   ....+|.++..+|..
T Consensus         3 ~~~~~~~~~~~~~~~~~---~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~~~~~~~~~aDvVilavp~~   76 (298)
T 2pv7_A            3 RESYANENQFGFKTINS---DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPIN   76 (298)
T ss_dssp             ----------CCCCSCT---TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGG
T ss_pred             hhHHhhhhccCccccCC---CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcccCHHHHhcCCCEEEEeCCHH
Confidence            34455667777865321   357899999 99999999999999999999999876432   345678887777743

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.00  E-value=8.2e-06  Score=64.51  Aligned_cols=53  Identities=17%  Similarity=0.175  Sum_probs=41.8

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCCCcccCceeEEecC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGMLGP  202 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~~~~~~~~~~~~~P  202 (210)
                      ..++..++|+|||+|++|+.+|+.+...|.+|.+|||+..  ....+|.++..+|
T Consensus        14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~--~~~~aD~vi~av~   66 (209)
T 2raf_A           14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ--ATTLGEIVIMAVP   66 (209)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC--CSSCCSEEEECSC
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH--HhccCCEEEEcCC
Confidence            3568899999999999999999999999999999999765  5567788877777

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.98  E-value=1.1e-05  Score=71.71  Aligned_cols=96  Identities=18%  Similarity=0.171  Sum_probs=59.6

Q ss_pred             CceEEE-EccccCCccch-hHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCccccccc
Q 028302           76 QMKLIM-QFGVGLEGVDI-NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (210)
Q Consensus        76 ~Lk~i~-~~~aG~d~id~-~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~  153 (210)
                      +++-+. -.++|+.++-. .......|++.|+++..+   .+..+-..+.--++...+.+            ..+..+.|
T Consensus       201 ~i~G~~EeTttGv~rL~~~~~~g~L~iPvinvnDs~t---K~~fDn~yGt~~sl~dgi~r------------~tg~~L~G  265 (488)
T 3ond_A          201 RVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVT---KSKFDNLYGCRHSLPDGLMR------------ATDVMIAG  265 (488)
T ss_dssp             HCCEEEECSHHHHHHHHHHHHTTCCCSCEEECTTSHH---HHTTHHHHHHHHHHHHHHHH------------HHCCCCTT
T ss_pred             hcceeEecccccHHHHHHHHHcCCCCCceecccchhh---hhHhhhhccccHHHHHHHHH------------HcCCcccC
Confidence            444443 44677776532 112245799999987622   22111111111111111100            12456999


Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |+++|+|+|.||+.+|++|+++|++|+++|+++
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            999999999999999999999999999999864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.94  E-value=5.9e-06  Score=66.88  Aligned_cols=43  Identities=21%  Similarity=0.309  Sum_probs=33.3

Q ss_pred             CCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          145 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       145 ~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .....++.+++|||||+|++|+.+|+.|...|.+|++|||++.
T Consensus        11 ~~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           11 HHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             --------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            3466889999999999999999999999999999999999754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.92  E-value=0.00011  Score=63.91  Aligned_cols=127  Identities=17%  Similarity=0.130  Sum_probs=73.9

Q ss_pred             cCCceEEEEcCCCCCHHHHhcC-CCceEEEEccccCCccchhHHhhCCcEEEecCCCCC-CCch------hHHHHHHHHH
Q 028302           53 IANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT-GNAA------SCAELTIYLM  124 (210)
Q Consensus        53 ~~~adv~i~~~~~~~~~~l~~~-p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~-~~a~------~vAE~~l~~~  124 (210)
                      +.++|+++....+ +++-++.+ ++-.+|....-.-|.--++.+.++++...----... ..+.      ++||.+=.. 
T Consensus        88 ~~~adiIlkVk~p-~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy~-  165 (405)
T 4dio_A           88 AKTADVILKVRRP-SAQEISGYRSGAVVIAIMDPYGNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGYQ-  165 (405)
T ss_dssp             GGGCSEEEEEECC-CTTTGGGSCTTCEEEEECCCTTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHHH-
T ss_pred             hccCCEEEEeCCC-ChhHHhhcCCCcEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHHH-
Confidence            5568988854333 34445555 566666666554454455667889988864322210 0112      233322211 


Q ss_pred             HHHHhhHHHHHHHHHhCCCCCC--cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          125 LGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       125 L~~~R~~~~~~~~~~~~~w~~~--~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                           -.......+ ...+...  ....+.+.+|+|+|+|.+|..+|+.+++||++|++||+++.
T Consensus       166 -----Av~~aa~~l-~~~~~~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          166 -----AVIDAAYEY-DRALPMMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             -----HHHHHHHHC-SSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             -----HHHHHHHHh-HhhhchhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence                 110000000 0011111  22457899999999999999999999999999999999864

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.92  E-value=4.4e-06  Score=68.32  Aligned_cols=125  Identities=18%  Similarity=0.161  Sum_probs=84.3

Q ss_pred             CCCChhhhcCCceEEE---EcCCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHH
Q 028302           45 PISDVPDVIANYHLCV---VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTI  121 (210)
Q Consensus        45 ~~~~~~~~~~~adv~i---~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l  121 (210)
                      +.+++.+.++..+..+   ..+.|+.++.+..++.+.-+.....|+|.++.    +.|-    ..|+   |...     .
T Consensus        39 ~~~~l~~~i~~l~~~~~G~~vt~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g~----~~g~---ntd~-----~  102 (263)
T 2d5c_A           39 PLEALPGRLKEVRRAFRGVNLTLPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEGR----LFGF---NTDA-----P  102 (263)
T ss_dssp             CGGGHHHHHHHHHHHCSEEEECTTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETTE----EEEE---CCHH-----H
T ss_pred             CHHHHHHHHHhccccCceEEEcccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCCe----EEEe---CCCH-----H
Confidence            4455555444332112   12467888888888888888888889999875    3342    2233   3222     2


Q ss_pred             HHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC--------------
Q 028302          122 YLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA--------------  187 (210)
Q Consensus       122 ~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~--------------  187 (210)
                      +++.++.+                 .+.++.| +++|||+|.+|+.+|+.+..+|++|.++||+..              
T Consensus       103 g~~~~l~~-----------------~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~~~  164 (263)
T 2d5c_A          103 GFLEALKA-----------------GGIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAV  164 (263)
T ss_dssp             HHHHHHHH-----------------TTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCEEC
T ss_pred             HHHHHHHH-----------------hCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccchh
Confidence            33333322                 1346889 999999999999999999999999999999742              


Q ss_pred             --CCCcccCceeEEecCCC
Q 028302          188 --SHSQVSCQSSGMLGPLS  204 (210)
Q Consensus       188 --~~~~~~~~~~~~~~Plt  204 (210)
                        .+. ..+|.+++..|..
T Consensus       165 ~~~~~-~~~Divi~~tp~~  182 (263)
T 2d5c_A          165 PLEKA-REARLLVNATRVG  182 (263)
T ss_dssp             CGGGG-GGCSEEEECSSTT
T ss_pred             hHhhc-cCCCEEEEccCCC
Confidence              123 5678888888876

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.90  E-value=6.9e-05  Score=64.11  Aligned_cols=129  Identities=14%  Similarity=0.022  Sum_probs=80.4

Q ss_pred             hhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEec---CCCCC--CCchhHHHHHH--HH
Q 028302           51 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI---PGDVT--GNAASCAELTI--YL  123 (210)
Q Consensus        51 ~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~---~~~~~--~~a~~vAE~~l--~~  123 (210)
                      +.+ ++|+++....|...+.....+++.++......++.-..+.+.+.|+...|.   +.-..  ..-.+++|.+-  +.
T Consensus        63 ~~~-~ad~i~~vksP~~~~~~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~  141 (361)
T 1pjc_A           63 DAW-SREMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSV  141 (361)
T ss_dssp             HHH-TSSEEECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHH
T ss_pred             HHh-cCCeEEEECCCCHHHHHhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHH
Confidence            344 789887654555444444347777777776666665566677888888764   32100  01234555444  33


Q ss_pred             HHHHHhhHHHHHHHHHhC--CCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          124 MLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~--~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++.... ....    ..+  .+... ...+.+++|.|+|.|.+|+.+++.++.+|++|+++|+++
T Consensus       142 ~~gA~n-t~~~----~~g~G~~l~~-l~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          142 QFGARF-LERQ----QGGRGVLLGG-VPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             HHHHHH-TSGG----GTSCCCCTTC-BTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             HHHHHH-Hhhc----cCCCceeccC-CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            333321 1111    111  11111 135788999999999999999999999999999999874

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.86  E-value=4.9e-05  Score=65.51  Aligned_cols=169  Identities=12%  Similarity=0.015  Sum_probs=93.9

Q ss_pred             CCCcceEEEeCCCCCC------chhhHHHHhhcCCCeEEecC-------CC-------CChhhhcCCceEEEEcCCCCCH
Q 028302            9 DKNITRVLFCGPHFPA------SHNYTKEYLQNYPSIQVDVV-------PI-------SDVPDVIANYHLCVVKTMRLDS   68 (210)
Q Consensus         9 ~~~~~~ili~~~~~~~------~~~~~~~~~~~~~~v~~~~~-------~~-------~~~~~~~~~adv~i~~~~~~~~   68 (210)
                      +-++|+|-+.....+.      .....+++.+...+|.+...       +.       .++.+.+. +|+++.. ..+++
T Consensus        19 ~~~~m~IgvpkE~~~~E~RValtP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~-adiIlkV-k~p~~   96 (381)
T 3p2y_A           19 PGSMTLIGVPRESAEGERRVALVPKVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWP-ADVVVKV-NPPTS   96 (381)
T ss_dssp             -CTTCEEEECCCCSTTCCCCSSCHHHHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTT-SSEEECS-SCCCH
T ss_pred             CCcceEEEEEecCCCCCceecCCHHHHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeec-CCEEEEe-CCCCh
Confidence            3456788887654432      12334555555445544321       11       11223333 7877753 34566


Q ss_pred             HHHhcC-CCceEEEEccccCCccchhHHhhCCcEEEecCCCCC-CCch------hHHHHHHHHHHHHHhhHHHHHHHHHh
Q 028302           69 NCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT-GNAA------SCAELTIYLMLGLLRKQNEMRMAIEQ  140 (210)
Q Consensus        69 ~~l~~~-p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~-~~a~------~vAE~~l~~~L~~~R~~~~~~~~~~~  140 (210)
                      +-++.+ ++-.+|....--.|.=-.+.+.++++...----... ..+.      ++||.+=..      -+...  ...-
T Consensus        97 ~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~------Av~~a--a~~l  168 (381)
T 3p2y_A           97 DEISQLKPGSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYK------AVLLG--ASLS  168 (381)
T ss_dssp             HHHTTSCTTCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHH------HHHHH--HHHC
T ss_pred             hHHhhccCCCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHHH------HHHHH--HHHh
Confidence            667776 466666665554455455668889988864322210 0112      233322211      11110  0000


Q ss_pred             CCCCC---CcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          141 KKLGV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       141 ~~w~~---~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++...   .....+.+++|+|+|+|.||..+|+.+++||++|+++|+++.
T Consensus       169 ~~~~~~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          169 TRFVPMLTTAAGTVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             SSCSSCEECSSCEECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             hhhhhhhhcccCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            11111   123467899999999999999999999999999999999853

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.82  E-value=1.3e-05  Score=68.85  Aligned_cols=37  Identities=32%  Similarity=0.505  Sum_probs=35.3

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +|.|+||+|+|+|++|+.+|++|..+|++|+++|++.
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~  206 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNK  206 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            7999999999999999999999999999999999864

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.80  E-value=8.2e-06  Score=69.27  Aligned_cols=39  Identities=33%  Similarity=0.476  Sum_probs=36.0

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+.+++|||||+|+||+.+|+.++..|++|++++++..
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~   50 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGS   50 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChH
Confidence            468899999999999999999999999999999999764

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.74  E-value=1.7e-05  Score=66.31  Aligned_cols=61  Identities=16%  Similarity=0.102  Sum_probs=43.5

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC----------------CcccCceeEEecCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGMLGPL  203 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------------~~~~~~~~~~~~Pl  203 (210)
                      |.....+...-++|||||+|.+|+.+|+.|...|.+|++|||++...                ....+|.++..+|-
T Consensus        11 ~~~~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~   87 (310)
T 3doj_A           11 SSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSD   87 (310)
T ss_dssp             -------CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSS
T ss_pred             ccccCcccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCC
Confidence            44444456667899999999999999999999999999999976421                23446777766664

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=97.72  E-value=1.6e-05  Score=70.54  Aligned_cols=45  Identities=24%  Similarity=0.360  Sum_probs=36.9

Q ss_pred             CCCCCC-ccccccc-CeEEEEecChHHHHHHHHhccC------CCEEEEEcCC
Q 028302          141 KKLGVP-TGETLLG-KTVFILGFGNIGVELAKRLRPF------GVKIIATKRS  185 (210)
Q Consensus       141 ~~w~~~-~~~~l~~-~tvGIiG~G~IG~~vA~~~~~f------g~~V~~~~~~  185 (210)
                      ++|..+ ....|.| +||||||+|++|..+|+.|+..      |++|++.++.
T Consensus        40 ~~w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~   92 (525)
T 3fr7_A           40 GRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRK   92 (525)
T ss_dssp             CGGGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECT
T ss_pred             cccccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCC
Confidence            356544 3578999 9999999999999999999987      9998865543

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.63  E-value=4.1e-05  Score=63.85  Aligned_cols=34  Identities=26%  Similarity=0.508  Sum_probs=28.1

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++||+||+|..|..+|+.|..-|.+|++|||++.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999999764

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.61  E-value=5.2e-05  Score=63.67  Aligned_cols=52  Identities=13%  Similarity=0.116  Sum_probs=34.1

Q ss_pred             HHHHHHhCCCCCCcc-cccccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCC
Q 028302          134 MRMAIEQKKLGVPTG-ETLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSW  186 (210)
Q Consensus       134 ~~~~~~~~~w~~~~~-~~l~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~  186 (210)
                      ++.+.+-..|..... .. -.++|||||+|.+|..+|+.|...| .+|++||+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~-M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A            5 HHHSSGVDLGTENLYFQS-MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             ----------CCCHHHHT-SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             cccccccccCcccCcccc-cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            334444445654311 11 2368999999999999999999999 9999999975

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.55  E-value=2.2e-05  Score=65.51  Aligned_cols=56  Identities=16%  Similarity=0.173  Sum_probs=44.9

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC----------------CCcccCceeEEecCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS----------------HSQVSCQSSGMLGPLS  204 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~----------------~~~~~~~~~~~~~Plt  204 (210)
                      .++..++|||||+|.+|+.+|+.+...|.+|++|||++..                +....+|.++..+|..
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~   76 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDN   76 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSH
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCH
Confidence            4566789999999999999999999999999999997531                1234577777777743

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.54  E-value=9e-05  Score=60.95  Aligned_cols=126  Identities=13%  Similarity=0.061  Sum_probs=81.6

Q ss_pred             CCCChhhhcC-----CceEEEEcCCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHH
Q 028302           45 PISDVPDVIA-----NYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAEL  119 (210)
Q Consensus        45 ~~~~~~~~~~-----~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~  119 (210)
                      +.+++.+.++     +.+.+.+ +.|...+.+..++.+.-......++|.++.    +.|-.+    |+   |....   
T Consensus        50 ~~~~l~~~i~~l~~~~~~G~nv-tiP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~~~----g~---nTd~~---  114 (275)
T 2hk9_A           50 NPEELKKAFEGFKALKVKGINV-TVPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGKAY----GY---NTDWI---  114 (275)
T ss_dssp             CGGGHHHHHHHHHHHTCCEEEE-CTTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTEEE----EE---CCHHH---
T ss_pred             CHHHHHHHHHHHHhCCCCEEEE-CccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCEEE----ee---cCCHH---
Confidence            4455544432     3444444 367777788877777766666777777653    334222    23   32221   


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC------------
Q 028302          120 TIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA------------  187 (210)
Q Consensus       120 ~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~------------  187 (210)
                        +++.++.+                 .+.++.+++++|||.|.+|+.+|+.|...|++|.++||+..            
T Consensus       115 --G~~~~l~~-----------------~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~  175 (275)
T 2hk9_A          115 --GFLKSLKS-----------------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLE  175 (275)
T ss_dssp             --HHHHHHHH-----------------HCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEE
T ss_pred             --HHHHHHHH-----------------hCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCe
Confidence              33333321                 13468899999999999999999999999999999999742            


Q ss_pred             -----CCCcccCceeEEecCCC
Q 028302          188 -----SHSQVSCQSSGMLGPLS  204 (210)
Q Consensus       188 -----~~~~~~~~~~~~~~Plt  204 (210)
                           .+.+..+|.+++..|..
T Consensus       176 ~~~~~~~~~~~aDiVi~atp~~  197 (275)
T 2hk9_A          176 VVNSPEEVIDKVQVIVNTTSVG  197 (275)
T ss_dssp             ECSCGGGTGGGCSEEEECSSTT
T ss_pred             eehhHHhhhcCCCEEEEeCCCC
Confidence                 12345678888887765

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.54  E-value=8.2e-05  Score=62.46  Aligned_cols=37  Identities=35%  Similarity=0.429  Sum_probs=33.3

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCC--EEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~--~V~~~~~~~  186 (210)
                      ++..++|||||+|.||+.+|+.++..|.  +|++||++.
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            3445899999999999999999999998  999999975

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.50  E-value=3.4e-05  Score=64.85  Aligned_cols=54  Identities=19%  Similarity=0.218  Sum_probs=42.7

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC----------------CCcccCceeEEecCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS----------------HSQVSCQSSGMLGPL  203 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~----------------~~~~~~~~~~~~~Pl  203 (210)
                      ....++|||||+|.+|+.+|+.+...|.+|++|||++..                +....+|.++..+|.
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~   97 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLEN   97 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSS
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCC
Confidence            345679999999999999999999999999999997531                023456777777774

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.48  E-value=0.00012  Score=60.63  Aligned_cols=50  Identities=12%  Similarity=0.111  Sum_probs=41.0

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC----------------CcccCceeEEecCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGMLGPL  203 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------------~~~~~~~~~~~~Pl  203 (210)
                      .++|||||+|.+|+.+|+.+...|.+|++|||++...                ... +|.++..+|-
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~   80 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLD   80 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCC
Confidence            3689999999999999999999999999999986532                123 6777777774

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.41  E-value=9.3e-05  Score=54.62  Aligned_cols=34  Identities=21%  Similarity=0.351  Sum_probs=32.4

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +++|+|||.|.+|+.+++.++.+|++|..+||+.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            8999999999999999999999999999999874

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.38  E-value=0.00026  Score=60.79  Aligned_cols=41  Identities=32%  Similarity=0.357  Sum_probs=36.8

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ..-+.|+||+|+|.|.+|+.+++.++.+|++|+++|+.+..
T Consensus         9 ~~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~   49 (389)
T 3q2o_A            9 RIILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNS   49 (389)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTC
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            34578999999999999999999999999999999987643

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.49  E-value=2.6e-05  Score=61.40  Aligned_cols=37  Identities=22%  Similarity=0.312  Sum_probs=34.3

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +.+++|||||+|++|+.+|+.+..+|++|.+|+|+..
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            6788999999999999999999999999999998754

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.35  E-value=0.00011  Score=61.58  Aligned_cols=69  Identities=14%  Similarity=0.022  Sum_probs=40.7

Q ss_pred             HHHHhCCCCCC----cccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC--CC----------------CCcc
Q 028302          136 MAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW--AS----------------HSQV  192 (210)
Q Consensus       136 ~~~~~~~w~~~----~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~--~~----------------~~~~  192 (210)
                      +..+.+.|...    .......++|||||+|.+|+.+|+.|...|. +|++|||++  ..                +...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~   82 (312)
T 3qsg_A            3 HHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAG   82 (312)
T ss_dssp             ----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHH
T ss_pred             cccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHh
Confidence            34445555422    2223345799999999999999999999999 999999963  10                1244


Q ss_pred             cCceeEEecCCC
Q 028302          193 SCQSSGMLGPLS  204 (210)
Q Consensus       193 ~~~~~~~~~Plt  204 (210)
                      .+|.++..+|-.
T Consensus        83 ~aDvVi~~vp~~   94 (312)
T 3qsg_A           83 ECDVIFSLVTAQ   94 (312)
T ss_dssp             HCSEEEECSCTT
T ss_pred             cCCEEEEecCch
Confidence            567777777654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.34  E-value=0.00024  Score=58.99  Aligned_cols=51  Identities=16%  Similarity=0.083  Sum_probs=41.2

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC-----------------CCCcccCceeEEecCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA-----------------SHSQVSCQSSGMLGPL  203 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~-----------------~~~~~~~~~~~~~~Pl  203 (210)
                      .++|||||+|.+|+.+|+.|...|.+|++|||++.                 .+....+|.++..+|.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~   74 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVN   74 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCC
Confidence            46899999999999999999999999999999742                 1134556777777775

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.33  E-value=0.00015  Score=54.15  Aligned_cols=41  Identities=17%  Similarity=0.288  Sum_probs=34.4

Q ss_pred             cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ....+.+++|.|+|+|.+|+.+|+.|+..|.+|+++|+++.
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            34567789999999999999999999999999999998653

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.33  E-value=7.4e-05  Score=62.40  Aligned_cols=51  Identities=18%  Similarity=0.214  Sum_probs=41.1

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC----------------CcccCceeEEecCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGMLGPLS  204 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------------~~~~~~~~~~~~Plt  204 (210)
                      ++||+||+|..|..+|+.|..-|.+|.+|||++...                ....+|.++..+|-.
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~   70 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPAS   70 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCH
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCch
Confidence            689999999999999999999999999999986321                344567777766643

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.23  E-value=0.00018  Score=61.24  Aligned_cols=34  Identities=32%  Similarity=0.477  Sum_probs=31.8

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -++|||||+|.||+.+|+.++..|.+|++||+++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999975

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.12  E-value=0.00024  Score=54.37  Aligned_cols=38  Identities=26%  Similarity=0.255  Sum_probs=34.8

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccC-CCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~f-g~~V~~~~~~~  186 (210)
                      .++.+.+++|+|+|.+|+.+|+.|+.. |.+|+++|+++
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            457788999999999999999999998 99999999864

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.11  E-value=0.00035  Score=59.78  Aligned_cols=36  Identities=19%  Similarity=0.425  Sum_probs=32.5

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.+++|||||+|.+|+.+|+.|...|.+|.+|||++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            567899999999999999999999999999999975

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.10  E-value=0.00024  Score=51.47  Aligned_cols=37  Identities=22%  Similarity=0.437  Sum_probs=31.8

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|+|.|.+|+.+++.|+..|.+|+.+|+..
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3567899999999999999999999999999999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.06  E-value=0.00036  Score=50.95  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=32.0

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..++++.|+|+|.+|+.+|+.|...|.+|+++|+.+
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            346789999999999999999999999999999865

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.03  E-value=0.00042  Score=50.87  Aligned_cols=34  Identities=18%  Similarity=0.462  Sum_probs=31.6

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..++.|+|+|.+|+.+|+.|+..|.+|+++|+.+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4579999999999999999999999999999875

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.02  E-value=0.00052  Score=49.50  Aligned_cols=34  Identities=32%  Similarity=0.473  Sum_probs=30.9

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +++|+|+|+|.+|+.+|+.|...|.+|.++|+++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            5789999999999999999999999999999864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.02  E-value=0.00082  Score=55.17  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=31.0

Q ss_pred             CeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|||||+ |++|+.+|+.+...|.+|++|||++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            58999999 9999999999999999999999864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.99  E-value=0.00051  Score=56.52  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=31.4

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|.+|..+|+.+...|++|+.||++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            689999999999999999999999999999875

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.91  E-value=0.00047  Score=55.89  Aligned_cols=38  Identities=24%  Similarity=0.420  Sum_probs=33.4

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~  186 (210)
                      +++.+.+|||||+|.+|+.+|+.+...|.+ |.+|||++
T Consensus         6 ~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A            6 RSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             -CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             cCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            456678999999999999999999988998 89999864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.91  E-value=0.00046  Score=54.69  Aligned_cols=35  Identities=34%  Similarity=0.399  Sum_probs=31.6

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEE-EcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~-~~~~~~  187 (210)
                      -++|||||+|++|+.+|+.+...|.+|.+ +||+..
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            46899999999999999999988999999 998753

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.91  E-value=0.00052  Score=54.21  Aligned_cols=35  Identities=34%  Similarity=0.385  Sum_probs=31.2

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..++|+|||+|.+|+.+|+.+...|.+|.++||+.
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45799999999999999999999999999999874

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.86  E-value=0.00091  Score=55.63  Aligned_cols=35  Identities=20%  Similarity=0.244  Sum_probs=31.5

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -+.|+|||||+|.+|..+|+.+. -|.+|++||+++
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            46799999999999999999999 999999999874

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.86  E-value=0.00077  Score=47.06  Aligned_cols=35  Identities=17%  Similarity=0.334  Sum_probs=32.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~  186 (210)
                      .+++|+|+|.|.||+.+++.+...| .+|+.++|++
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            4679999999999999999999999 8999999875

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.84  E-value=0.0015  Score=55.80  Aligned_cols=40  Identities=25%  Similarity=0.369  Sum_probs=36.1

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~  189 (210)
                      .+.++||||+|.|.+|+.+++.++.+|++|+++|+.+...
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p   48 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCP   48 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCh
Confidence            4678999999999999999999999999999999876543

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=96.84  E-value=0.00088  Score=56.82  Aligned_cols=33  Identities=36%  Similarity=0.404  Sum_probs=29.2

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEE-EcCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRS  185 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~-~~~~  185 (210)
                      -.+|||.|||+||+.++|.+..+|++|.+ +|+.
T Consensus         7 ~~kvgInGFGRIGrlv~R~~~~~~veivainDp~   40 (346)
T 3h9e_O            7 ELTVGINGFGRIGRLVLRACMEKGVKVVAVNDPF   40 (346)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             eeEEEEECCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            35899999999999999999999999988 5654

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.84  E-value=0.001  Score=54.89  Aligned_cols=56  Identities=16%  Similarity=0.125  Sum_probs=45.3

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCCCC-----------------CcccCceeEEecCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH-----------------SQVSCQSSGMLGPL  203 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~~~-----------------~~~~~~~~~~~~Pl  203 (210)
                      +.++.++++.|+|.|.+|+.++..|...|+ +|..++|+....                 .....|.+++..|.
T Consensus       112 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~  185 (277)
T 3don_A          112 YEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPA  185 (277)
T ss_dssp             STTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccC
Confidence            346899999999999999999999999999 899999985421                 23567777777665

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.83  E-value=0.00063  Score=60.04  Aligned_cols=67  Identities=15%  Similarity=0.111  Sum_probs=46.0

Q ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccc-------cccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET-------LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       112 ~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~-------l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      |--.|.|.+..+++..         .+..++|..+.+..       ..=++|+|||.|.+|..+|..+..-|.+|+.||+
T Consensus        15 ~~~~~~~~~~~~~~~a---------~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~   85 (460)
T 3k6j_A           15 NLYFQGSEVRSYLMEA---------HSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVR   85 (460)
T ss_dssp             GGGGCBCHHHHHHHHT---------TCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             chhhhhHHHHHHHHhH---------HHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEC
Confidence            3344555555555552         23345576552221       1226899999999999999999999999999998


Q ss_pred             CCC
Q 028302          185 SWA  187 (210)
Q Consensus       185 ~~~  187 (210)
                      +..
T Consensus        86 ~~e   88 (460)
T 3k6j_A           86 NEQ   88 (460)
T ss_dssp             CHH
T ss_pred             cHH
Confidence            653

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.77  E-value=0.0004  Score=56.29  Aligned_cols=54  Identities=20%  Similarity=0.295  Sum_probs=43.9

Q ss_pred             HHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       133 ~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      +|.+++.-..|.......|.+++|.|+|.|.+|..+|+.|...|. +|..+|+..
T Consensus        11 ry~Rq~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           11 RYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HTHHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HhhheecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            445555444576555577999999999999999999999999998 899999864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.71  E-value=0.00097  Score=59.17  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=32.4

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.++|||||+|.+|+.+|+.+...|.+|.+|||++
T Consensus        11 ~~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           11 HHMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             ----CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            45678899999999999999999999999999999974

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.71  E-value=0.0008  Score=55.93  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=31.9

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -++|||||+|.+|+.+|+.+...|.+|.+|||+..
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            36899999999999999999999999999998753

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.68  E-value=0.0017  Score=52.26  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=30.8

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+|||||+|.+|+.+++.+...|.+|.+|||++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            589999999999999999999999999999974

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.65  E-value=0.0012  Score=54.22  Aligned_cols=33  Identities=24%  Similarity=0.279  Sum_probs=31.0

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|||||+|.+|+.+|+.+...|.+|.+|||++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            689999999999999999998999999999874

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=96.62  E-value=0.001  Score=53.66  Aligned_cols=50  Identities=14%  Similarity=0.131  Sum_probs=39.1

Q ss_pred             cCeEEEEecChHHHHHHHHhccCC----CEEEEEcCCCCC----------CCcccCceeEEecC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWAS----------HSQVSCQSSGMLGP  202 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg----~~V~~~~~~~~~----------~~~~~~~~~~~~~P  202 (210)
                      ..+|||||+|++|+.+|+.+...|    .+|.+|||+...          +....+|.++..+|
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~   67 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVK   67 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCSSSSEECSCHHHHHHHCSEEEECSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcccCceEEeCCHHHHHhcCCEEEEEeC
Confidence            468999999999999999998777    689999987641          12345677777666

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.62  E-value=0.0011  Score=58.93  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=32.0

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++|||||+|.+|+.+|+.+...|.+|.+|||++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999985

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.54  E-value=0.0018  Score=48.02  Aligned_cols=35  Identities=9%  Similarity=0.101  Sum_probs=31.9

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++++.|+|+|.+|+.+++.|...|.+|..+|+.+
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            35789999999999999999999999999999864

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.54  E-value=0.0014  Score=53.65  Aligned_cols=34  Identities=38%  Similarity=0.504  Sum_probs=29.9

Q ss_pred             cCeEEEEecChHHHHHHHHhccC--CCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPF--GVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~f--g~~V~~~~~~~  186 (210)
                      -++|||||+|.+|+.+|+.+...  |.+|++||+++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            36899999999999999998854  78999999863

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.52  E-value=0.0018  Score=53.25  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=30.9

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+|+|||+|.+|+.+|+.+...|.+|.+||+++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999999874

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.48  E-value=0.0026  Score=52.82  Aligned_cols=38  Identities=24%  Similarity=0.263  Sum_probs=35.1

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .++.+++++|+|.|.+|+.++..|...|+ +|..++|+.
T Consensus       137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            35789999999999999999999999998 999999974

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.45  E-value=0.0026  Score=51.96  Aligned_cols=38  Identities=16%  Similarity=0.214  Sum_probs=35.1

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.++++.|+|.|.+|+.+|+.|...|.+|..++|+.
T Consensus       115 ~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          115 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            35789999999999999999999999999999999974

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.45  E-value=0.0058  Score=50.14  Aligned_cols=52  Identities=21%  Similarity=0.174  Sum_probs=43.0

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC--------------CcccCceeEEecCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGMLGPLS  204 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~--------------~~~~~~~~~~~~Plt  204 (210)
                      ++++.|+|.|.+|+.++..|...|.+|..++|+....              .+...|.+++..|..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l~~~DiVInaTp~G  183 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKSAFDLIINATSAS  183 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCSSCCSEEEECCTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHhccCCEEEEcccCC
Confidence            8999999999999999999999999999999986531              123567777777764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.42  E-value=0.0018  Score=53.24  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=31.2

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCC---EEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGV---KIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~---~V~~~~~~~  186 (210)
                      .++|||||+|++|+.+|+.+..-|.   +|.+|||+.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            4789999999999999999998888   899999975

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.40  E-value=0.0025  Score=52.73  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=30.8

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|.+|..+|..+..-|.+|+.||++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            689999999999999999998899999999873

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.40  E-value=0.0048  Score=50.74  Aligned_cols=37  Identities=24%  Similarity=0.287  Sum_probs=34.2

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++.++++.|+|.|.+|+++|+.|...| +|..++|+.
T Consensus       124 ~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          124 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            3578999999999999999999999999 999999874

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.39  E-value=0.0076  Score=52.75  Aligned_cols=37  Identities=32%  Similarity=0.614  Sum_probs=33.3

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      +.++.|+||.|.|+|++|+.+|++|..+|++|++++.
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD  266 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQD  266 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEc
Confidence            4579999999999999999999999999999995443

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.38  E-value=0.0076  Score=52.51  Aligned_cols=37  Identities=41%  Similarity=0.487  Sum_probs=33.5

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      +.++.|+||.|.|+|++|+.+|++|..+|++|++++.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD  241 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSD  241 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEC
Confidence            5689999999999999999999999999999995543

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=96.34  E-value=0.00089  Score=53.86  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ..+|||||+|.+|..+|+.|+.-|.+|.+|++.
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            368999999999999999999999999999984

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.29  E-value=0.0043  Score=51.29  Aligned_cols=55  Identities=18%  Similarity=0.134  Sum_probs=46.0

Q ss_pred             ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecC
Q 028302          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGP  202 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~P  202 (210)
                      +.++.|+++.|||.|. +|+.+|..|...|++|...+++.+.  +...++|.++...|
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~~~ADIVI~Avg  212 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAG  212 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHTTCSEEEECSS
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHhhcCCEEEECCC
Confidence            5689999999999998 6999999999999999999876443  24667788777765

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.0026  Score=56.68  Aligned_cols=34  Identities=18%  Similarity=0.279  Sum_probs=31.5

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+|||||+|.+|+.+|+.+..-|.+|.+|||++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4589999999999999999999999999999975

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.20  E-value=0.0037  Score=51.33  Aligned_cols=33  Identities=21%  Similarity=0.210  Sum_probs=30.6

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+|+|||.|.+|..+|..|..-|.+|.+|||++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            589999999999999999998899999999964

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.18  E-value=0.0051  Score=50.81  Aligned_cols=55  Identities=13%  Similarity=0.100  Sum_probs=45.5

Q ss_pred             ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecC
Q 028302          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGP  202 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~P  202 (210)
                      +.++.|+++.|||.|. +|+.+|..|...|++|...+++.+.  +...++|.++...|
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg  213 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVG  213 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhcccCCEEEECCC
Confidence            4689999999999998 6999999999999999999875432  24567787777654

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.18  E-value=0.0071  Score=49.83  Aligned_cols=55  Identities=13%  Similarity=0.059  Sum_probs=45.5

Q ss_pred             ccccccCeEEEEecChH-HHHHHHHhccC--CCEEEEEcCCCCC--CCcccCceeEEecC
Q 028302          148 GETLLGKTVFILGFGNI-GVELAKRLRPF--GVKIIATKRSWAS--HSQVSCQSSGMLGP  202 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~I-G~~vA~~~~~f--g~~V~~~~~~~~~--~~~~~~~~~~~~~P  202 (210)
                      +.++.|+++.|||.|+| |+.+|+.|...  |++|...+++.+.  +...++|.++...+
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~~~~~~ADIVI~Avg  212 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQADIVVAAVG  212 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHHHHHTTCSEEEECSC
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHHHHHhhCCEEEECCC
Confidence            46799999999999985 99999999999  9999999876543  35667777777654

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.17  E-value=0.0072  Score=52.68  Aligned_cols=38  Identities=26%  Similarity=0.395  Sum_probs=34.0

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      +.++.|+||.|.|+|++|+.+|+.|..+|++|++++.+
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~  244 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEW  244 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBC
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            45799999999999999999999999999999965543

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.15  E-value=0.0052  Score=50.81  Aligned_cols=55  Identities=16%  Similarity=0.150  Sum_probs=45.2

Q ss_pred             ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecC
Q 028302          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGP  202 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~P  202 (210)
                      +.++.|+++.|||.|+ +|+.+|++|...|++|..++++.+.  +...++|.++...+
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg  211 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVG  211 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHHHHCSEEEECSC
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHHhccCCEEEECCC
Confidence            5689999999999997 5999999999999999999876543  24566777776654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.14  E-value=0.0041  Score=52.22  Aligned_cols=33  Identities=33%  Similarity=0.340  Sum_probs=30.9

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|+|||+|.+|..+|..|...|.+|.+|||++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            689999999999999999999999999999864

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.12  E-value=0.0093  Score=51.95  Aligned_cols=37  Identities=38%  Similarity=0.551  Sum_probs=33.2

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      +.++.|+||.|-|+|++|+.+|++|..+|++|++++.
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD  252 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISD  252 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            4579999999999999999999999999999876543

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.11  E-value=0.0077  Score=44.27  Aligned_cols=38  Identities=13%  Similarity=0.260  Sum_probs=31.8

Q ss_pred             cccccCeEEEEec----ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~----G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .-.+-++|+|||.    |++|+.+++.++..|++|..+|++.
T Consensus        10 ~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~   51 (138)
T 1y81_A           10 NSKEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNY   51 (138)
T ss_dssp             ----CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cccCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCC
Confidence            3456789999999    9999999999999999999999875

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=96.11  E-value=0.0025  Score=52.11  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=29.3

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ++|||||+|.+|+.+|+.+...|.+|.+||+.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTTIG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECCSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEcCH
Confidence            58999999999999999999999999999754

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.11  E-value=0.0031  Score=55.78  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=31.3

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++|||||+|.+|+.+|+.+...|.+|.+|||++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            3689999999999999999999999999999964

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.10  E-value=0.0057  Score=51.42  Aligned_cols=38  Identities=26%  Similarity=0.406  Sum_probs=35.2

Q ss_pred             ccccccCeEEEEecChH-HHHHHHHhccCCCEEEEEcCC
Q 028302          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~I-G~~vA~~~~~fg~~V~~~~~~  185 (210)
                      +.++.|+++.|||.|++ |+.+|+.|...|++|..+||+
T Consensus       172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          172 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            55899999999999986 999999999999999999886

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.10  E-value=0.012  Score=51.24  Aligned_cols=36  Identities=28%  Similarity=0.597  Sum_probs=32.7

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEc
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~  183 (210)
                      +.++.|+||.|-|+|++|+.+|+.|..+|++|++++
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavs  248 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVA  248 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEE
Confidence            457999999999999999999999999999999443

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=96.10  E-value=0.0044  Score=52.53  Aligned_cols=32  Identities=19%  Similarity=0.182  Sum_probs=30.1

Q ss_pred             eEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +|+|||.|++|..+|..|..-|.+|.+|||+.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            89999999999999999998899999999864

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.10  E-value=0.0023  Score=51.86  Aligned_cols=53  Identities=23%  Similarity=0.382  Sum_probs=42.1

Q ss_pred             HHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       133 ~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      +|.+++.-..|.......|++++|.|+|.|.+|..+|+.|...|. ++..+|+.
T Consensus         8 ry~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1            8 RYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HTHHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             HhhhhcchhhcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            444555444566555678999999999999999999999999998 78888764

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.05  E-value=0.0052  Score=50.54  Aligned_cols=53  Identities=13%  Similarity=-0.023  Sum_probs=43.9

Q ss_pred             cccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecCC
Q 028302          151 LLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGPL  203 (210)
Q Consensus       151 l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~Pl  203 (210)
                      +.|+++.|||.|+ +|+.+|+.|...|++|..++++.+.  +...++|.++...|.
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~~~~ADIVI~Avg~  203 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVVVAVGR  203 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHHSSEEEECSSC
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHhhccCCEEEECCCC
Confidence            9999999999997 7999999999999999999875432  246677777777653

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.04  E-value=0.006  Score=50.40  Aligned_cols=55  Identities=20%  Similarity=0.225  Sum_probs=45.2

Q ss_pred             ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecC
Q 028302          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGP  202 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~P  202 (210)
                      +.++.||++.|||.|. +|+.+|.+|...|++|...+++.+.  +...++|.++...|
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~~~ADIVI~Avg  213 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAG  213 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHTCSEEEECCC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHhccCCEEEECCC
Confidence            4689999999999988 7999999999999999999875432  24567777777654

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.02  E-value=0.0048  Score=51.35  Aligned_cols=56  Identities=16%  Similarity=0.131  Sum_probs=46.1

Q ss_pred             ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCC--C--CCcccCceeEEecCC
Q 028302          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWA--S--HSQVSCQSSGMLGPL  203 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~--~--~~~~~~~~~~~~~Pl  203 (210)
                      +.++.|+++.|||.|. +|+.+|..|...|++|..++++.+  +  +...++|.++...|.
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l~~~~~~ADIVI~Avg~  220 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQ  220 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHHHHHHHTCSEEEECSCC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchhhhhhccCCEEEECCCC
Confidence            5689999999999998 699999999999999999997433  1  345678888877653

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.01  E-value=0.0038  Score=52.20  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=31.3

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCC----CEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg----~~V~~~~~~~~  187 (210)
                      ....+|||||+|++|..+|+.|..-|    .+|.+|||+..
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            44568999999999999999998878    78999999764

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.00  E-value=0.0067  Score=50.02  Aligned_cols=39  Identities=26%  Similarity=0.348  Sum_probs=35.7

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      +.++.++++.|+|.|.+|+.++..|...|+ +|..++|+.
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            356899999999999999999999999997 999999975

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.94  E-value=0.0065  Score=53.18  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=31.7

Q ss_pred             cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+++..-.+|+|||+|.+|..+|..+.. |.+|++||+++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            4566777899999999999999999988 99999999864

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=95.91  E-value=0.017  Score=50.29  Aligned_cols=37  Identities=32%  Similarity=0.451  Sum_probs=33.2

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhcc-CCCEEEEEcC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRP-FGVKIIATKR  184 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~-fg~~V~~~~~  184 (210)
                      +.++.|+||.|.|+|++|+.+|++|.. .|++|++++.
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD  241 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSD  241 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEe
Confidence            457999999999999999999999998 9999995543

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.91  E-value=0.0084  Score=49.89  Aligned_cols=55  Identities=11%  Similarity=0.107  Sum_probs=45.1

Q ss_pred             ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecC
Q 028302          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGP  202 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~P  202 (210)
                      +.++.|+++.|||.|+ +|+.+|+.|...|++|..++++.+.  +...++|.++...+
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg  217 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATG  217 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHhccCCEEEECCC
Confidence            4689999999999997 6999999999999999999865442  34567777777654

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=95.88  E-value=0.0047  Score=50.47  Aligned_cols=38  Identities=21%  Similarity=0.213  Sum_probs=35.1

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.+++++|+|.|.+|+.+|..|...|.+|..++|+.
T Consensus       115 ~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          115 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35789999999999999999999999999999999974

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=95.79  E-value=0.018  Score=50.48  Aligned_cols=37  Identities=24%  Similarity=0.415  Sum_probs=33.8

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      +.++.|+||.|=|+|++|+.+|+.|...|++|++.+.
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD  266 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASD  266 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEec
Confidence            4579999999999999999999999999999998663

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.76  E-value=0.0094  Score=48.90  Aligned_cols=39  Identities=23%  Similarity=0.345  Sum_probs=35.7

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      +.++.++++.|+|.|.+|+.++..|...|+ +|..++|+.
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            356899999999999999999999999997 999999975

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.73  E-value=0.0088  Score=50.15  Aligned_cols=38  Identities=26%  Similarity=0.400  Sum_probs=35.6

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|..++|+
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            356899999999999999999999999999 89999998

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.73  E-value=0.0094  Score=51.75  Aligned_cols=40  Identities=20%  Similarity=0.237  Sum_probs=35.9

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      .-+.+++|+|+|-|.+|+.+++.++.+|.+|+.+|+.+..
T Consensus        31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~   70 (419)
T 4e4t_A           31 PILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPAS   70 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcC
Confidence            3567999999999999999999999999999999986543

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.69  E-value=0.0078  Score=50.40  Aligned_cols=34  Identities=29%  Similarity=0.399  Sum_probs=31.1

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+|+|||.|++|..+|+.|..-|.+|..|+|++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4689999999999999999998899999999863

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.66  E-value=0.0098  Score=48.90  Aligned_cols=40  Identities=23%  Similarity=0.424  Sum_probs=36.5

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .-++.|++|.|||.|.+|...++.|...|++|..+++...
T Consensus         8 ~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~   47 (274)
T 1kyq_A            8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (274)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             EEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            3578999999999999999999999999999999998654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.65  E-value=0.009  Score=47.65  Aligned_cols=41  Identities=22%  Similarity=0.274  Sum_probs=37.4

Q ss_pred             cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..-++.|++|.|||.|.+|...++.|...|++|+.+++...
T Consensus        25 ifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~   65 (223)
T 3dfz_A           25 VMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVS   65 (223)
T ss_dssp             EEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCC
T ss_pred             cEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            44689999999999999999999999999999999998654

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.65  E-value=0.0063  Score=53.60  Aligned_cols=33  Identities=12%  Similarity=0.258  Sum_probs=30.2

Q ss_pred             CeEEEEecChHHHHHHHHhccC--CCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~f--g~~V~~~~~~~  186 (210)
                      ++|+|||+|.+|..+|..+...  |.+|++||++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5899999999999999999877  89999999863

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.64  E-value=0.0083  Score=52.55  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=35.1

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++.+|+|.|||+|.+|..+|+.|+..|.+|.++|...
T Consensus         5 ~~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CTTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hhcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            35789999999999999999999999999999999854

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.52  E-value=0.01  Score=50.46  Aligned_cols=35  Identities=29%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..++|+|||.|++|..+|..|..-|.+|..|+|++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            34689999999999999999999999999999963

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.50  E-value=0.013  Score=48.32  Aligned_cols=38  Identities=24%  Similarity=0.266  Sum_probs=35.1

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ..+.++++.|+|.|.+|+.++..|...|+ +|..++|+.
T Consensus       123 ~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            46889999999999999999999999999 799999974

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.50  E-value=0.0088  Score=48.53  Aligned_cols=53  Identities=17%  Similarity=0.161  Sum_probs=42.3

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCCCC-----------------CcccCceeEEecCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH-----------------SQVSCQSSGMLGPL  203 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~~~-----------------~~~~~~~~~~~~Pl  203 (210)
                      .+.| +++|+|.|..|++++..|...|+ +|..++|+....                 ....+|.+++..|.
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~  176 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSV  176 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSST
T ss_pred             CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCC
Confidence            3578 99999999999999999999999 899999975310                 13456777777665

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.49  E-value=0.0083  Score=47.20  Aligned_cols=41  Identities=22%  Similarity=0.289  Sum_probs=32.6

Q ss_pred             cccccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ....+.|++|.|.|. |.||+++++.|..-|.+|++.+|+..
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            446799999999996 99999999999999999999998754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.45  E-value=0.012  Score=51.78  Aligned_cols=34  Identities=24%  Similarity=0.432  Sum_probs=31.4

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -++|+|||.|.+|..+|..+..-|.+|+.||++.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999864

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=95.45  E-value=0.0058  Score=51.39  Aligned_cols=35  Identities=26%  Similarity=0.217  Sum_probs=31.0

Q ss_pred             cCeEEEEecChHHHHHHHHhccCC-------CEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg-------~~V~~~~~~~~  187 (210)
                      .++|+|||.|++|..+|..+..-|       .+|..|+|+..
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            368999999999999999998777       89999998754

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=95.43  E-value=0.012  Score=48.48  Aligned_cols=55  Identities=13%  Similarity=0.052  Sum_probs=44.8

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCCCC----------------CcccCceeEEecCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH----------------SQVSCQSSGMLGPL  203 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~~~----------------~~~~~~~~~~~~Pl  203 (210)
                      +.++.++++.|+|.|..|+.++..|...|+ +|..++|+....                .+ ..|.+++.-|.
T Consensus       117 ~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~l-~~DivInaTp~  188 (282)
T 3fbt_A          117 RVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSNL-KGDVIINCTPK  188 (282)
T ss_dssp             TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTTC-CCSEEEECSST
T ss_pred             CCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHhc-cCCEEEECCcc
Confidence            346889999999999999999999999999 899999975211                02 67778887765

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=95.42  E-value=0.015  Score=42.99  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=31.2

Q ss_pred             cCeEEEEec----ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~----G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -++|+|||.    |++|..+++.++..|++|+.+|++.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~   50 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKV   50 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcc
Confidence            678999999    8999999999999899999999865

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.41  E-value=0.011  Score=49.32  Aligned_cols=36  Identities=17%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             cccCeEEEEecChHHHHHHHHhcc-CCC-EEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~-fg~-~V~~~~~~~  186 (210)
                      ...++|||||+|.+|+.+++.+.. +|. +|.+|||++
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~  170 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTK  170 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSH
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCH
Confidence            456799999999999999998864 587 899999874

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.41  E-value=0.0091  Score=52.94  Aligned_cols=34  Identities=24%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -++|||||.|.+|..+|..+..-|.+|+.||++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999999875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=95.40  E-value=0.0066  Score=51.72  Aligned_cols=34  Identities=21%  Similarity=0.136  Sum_probs=30.1

Q ss_pred             CeEEEEecChHHHHHHHHhccCC-------CEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg-------~~V~~~~~~~~  187 (210)
                      ++|+|||.|++|..+|..|..-|       .+|..|+|+..
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            47999999999999999997666       89999998754

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=95.31  E-value=0.014  Score=51.81  Aligned_cols=35  Identities=34%  Similarity=0.585  Sum_probs=32.4

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      +|.|+||.|-|+|++|+..|+.|..+|++|++++.
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsD  275 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGE  275 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            68999999999999999999999999999998543

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=95.31  E-value=0.0083  Score=49.39  Aligned_cols=31  Identities=19%  Similarity=0.329  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHhccC-----C-CEEEEEcC
Q 028302          154 KTVFILGFGNIGVELAKRLRPF-----G-VKIIATKR  184 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~f-----g-~~V~~~~~  184 (210)
                      .+|+|||.|++|..+|..|..-     | .+|.+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4799999999999999999877     8 89999998

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.30  E-value=0.01  Score=49.81  Aligned_cols=33  Identities=30%  Similarity=0.350  Sum_probs=30.5

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .++|+|||.|.+|..+|..|..-|.+|..|+|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            468999999999999999999889999999984

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.25  E-value=0.016  Score=48.46  Aligned_cols=38  Identities=26%  Similarity=0.406  Sum_probs=35.4

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      +.++.++++.|+|.|.+|++++..|...|+ +|..++|+
T Consensus       143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            356899999999999999999999999999 89999998

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=95.20  E-value=0.031  Score=49.20  Aligned_cols=36  Identities=19%  Similarity=0.331  Sum_probs=32.9

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEc
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~  183 (210)
                      +.++.|+||.|-|+|++|+.+|+.|..+|++|++++
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavs  282 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLS  282 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEE
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence            467999999999999999999999999999999544

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.13  E-value=0.017  Score=50.65  Aligned_cols=34  Identities=15%  Similarity=0.386  Sum_probs=31.6

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -+++|||+|.+|..+|..+...|.+|++||++..
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999999999999999999999999998753

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.13  E-value=0.014  Score=48.93  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=31.4

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .-.+|+|||.|-+|..+|..+..-|++|+.||+++
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            35689999999999999999999999999999875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.09  E-value=0.019  Score=48.13  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=33.9

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      .|.+|.|+|.|.||...++.++.+|++|++.+++...
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~  212 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHK  212 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            5889999999999999999999999999999987643

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.08  E-value=0.011  Score=49.95  Aligned_cols=37  Identities=30%  Similarity=0.522  Sum_probs=34.7

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.|++|.|+|.|.||..+++.++.+|++|++.+++.
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~  214 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRRE  214 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            5679999999999999999999999999999999875

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.07  E-value=0.011  Score=46.77  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=30.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+++.|+|+|.+|+.+|+.|...|. |+++|+.+.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            35689999999999999999999999 999998653

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.07  E-value=0.014  Score=49.55  Aligned_cols=36  Identities=31%  Similarity=0.452  Sum_probs=33.3

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .|++|.|+|.|.||..+++.++.+|++|++++++..
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~  222 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPS  222 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            689999999999999999999999999999997653

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=95.03  E-value=0.03  Score=49.13  Aligned_cols=35  Identities=43%  Similarity=0.706  Sum_probs=32.6

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEE
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT  182 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~  182 (210)
                      +.++.|+||.|.|+|++|+.+|++|...|++|+++
T Consensus       225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVav  259 (449)
T 1bgv_A          225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTL  259 (449)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEE
T ss_pred             cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            46899999999999999999999999999999973

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.02  E-value=0.019  Score=50.92  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=31.8

Q ss_pred             CeEEEEecChHHHHHHHHhccC-CC-EEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPF-GV-KIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~f-g~-~V~~~~~~~~  187 (210)
                      ++|+|||+|.+|..+|..+... |. +|++||+...
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            5899999999999999999988 99 9999998765

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.00  E-value=0.017  Score=47.83  Aligned_cols=50  Identities=24%  Similarity=0.389  Sum_probs=34.2

Q ss_pred             HHHHhCCCCC-CcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          136 MAIEQKKLGV-PTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       136 ~~~~~~~w~~-~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      +++.=..|.. .....|++++|.|||.|.+|..+|+.|...|. ++..+|+.
T Consensus        18 r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D   69 (292)
T 3h8v_A           18 GSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD   69 (292)
T ss_dssp             --------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhhcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3333345665 45678999999999999999999999998887 78888874

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.91  E-value=0.013  Score=50.99  Aligned_cols=34  Identities=32%  Similarity=0.485  Sum_probs=31.4

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.+|.|+|+|.+|+.+|+.|+..|.+|+++|+.+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4579999999999999999999999999999875

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.89  E-value=0.02  Score=50.63  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=31.5

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+|+|||+|.+|..+|..|...|.+|++||++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999999863

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.86  E-value=0.021  Score=46.16  Aligned_cols=36  Identities=33%  Similarity=0.553  Sum_probs=32.6

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++++|.|.|.|-||+.+++.|..-|.+|++++|+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            467999999999999999999989999999998753

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=94.82  E-value=0.02  Score=48.39  Aligned_cols=36  Identities=31%  Similarity=0.355  Sum_probs=33.3

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .|++|.|+|.|.||...++.++.+|++|++++++..
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~  214 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR  214 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            478999999999999999999999999999998654

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=94.75  E-value=0.025  Score=49.55  Aligned_cols=38  Identities=32%  Similarity=0.457  Sum_probs=33.8

Q ss_pred             cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      ...-|+||||+|||||+-|.+=|.-||.-|++|++=-|
T Consensus        31 ~~~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr   68 (491)
T 3ulk_A           31 GASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALR   68 (491)
T ss_dssp             TTGGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             hhHHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeC
Confidence            34679999999999999999999999999999887544

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=94.68  E-value=0.023  Score=49.83  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=32.4

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEc
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~  183 (210)
                      +.++.|+||.|-|+|++|+.+|+.|..+|++|++++
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavs  269 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMS  269 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEE
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            467999999999999999999999999999997433

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.53  E-value=0.027  Score=46.91  Aligned_cols=34  Identities=15%  Similarity=0.243  Sum_probs=30.5

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .++|+|||.|.+|..+|..+..-|. +|..||+..
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            4689999999999999999987787 999999865

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=94.53  E-value=0.031  Score=47.34  Aligned_cols=62  Identities=24%  Similarity=0.364  Sum_probs=46.3

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ...||.++-+=|-+.|-          .-|.......|++++|.|||.|.+|..+|+.|...|. ++..+|+.
T Consensus         5 ~~~~~~~~~lnl~lm~w----------Rll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A            5 LKIADQSVDLNLKLMKW----------RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HHHHHHHHHHHHHHHHH----------HTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHH----------hhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            45666666655544431          2344444467999999999999999999999999998 68888874

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.52  E-value=0.028  Score=46.74  Aligned_cols=37  Identities=24%  Similarity=0.269  Sum_probs=29.4

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..-..++|+|||.|.+|..+|..|..-|.+|..| +++
T Consensus        15 ~~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           15 LYFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             hhccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            3456689999999999999999999889999999 543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.49  E-value=0.032  Score=44.89  Aligned_cols=37  Identities=35%  Similarity=0.467  Sum_probs=33.9

Q ss_pred             ccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +|+||++.|-|.+   .||+++|+.|..-|++|+..+|+.
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~   42 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKE   42 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            6899999999974   599999999999999999999874

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=94.46  E-value=0.032  Score=45.68  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=34.2

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.|+++.|+| .|.||+++++.|...|++|+.++|+.
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            47889999999 99999999999999999999999863

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.38  E-value=0.025  Score=48.00  Aligned_cols=36  Identities=31%  Similarity=0.387  Sum_probs=33.0

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .|.+|.|+|.|.||...++.++.+|++|++.+++..
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~  229 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA  229 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            488999999999999999999999999999997653

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=94.33  E-value=0.033  Score=45.19  Aligned_cols=44  Identities=25%  Similarity=0.252  Sum_probs=34.5

Q ss_pred             CCCCcccccccCeEEEEec-Ch--HHHHHHHHhccCCCEEEEEcCCC
Q 028302          143 LGVPTGETLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~-G~--IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |.......+.+|++.|.|- |.  ||+++|+.|..-|++|+..+|+.
T Consensus        16 ~~~~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           16 PRGSHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             ------CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCCcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            4444456799999999995 45  99999999999999999999876

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=94.33  E-value=0.031  Score=48.83  Aligned_cols=37  Identities=19%  Similarity=0.387  Sum_probs=31.7

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .-+|.++.|||+|.+|..+|..|...|.+|++||+++
T Consensus         8 ~~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A            8 HHHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             ----CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3578999999999999999999999999999999874

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=94.31  E-value=0.031  Score=49.12  Aligned_cols=39  Identities=18%  Similarity=0.267  Sum_probs=36.0

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .-+++|++|.|||.|.+|.+.++.|...|++|..+|+..
T Consensus         7 ~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A            7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            356899999999999999999999999999999999864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.27  E-value=0.026  Score=49.91  Aligned_cols=33  Identities=12%  Similarity=0.157  Sum_probs=29.6

Q ss_pred             CeEEEEecChHHHHHHHHhccC--CCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~f--g~~V~~~~~~~  186 (210)
                      .+|+|||+|.+|..+|..+...  |.+|++||++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5899999999999999999865  79999999853

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=94.25  E-value=0.055  Score=46.58  Aligned_cols=35  Identities=9%  Similarity=0.154  Sum_probs=32.0

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -.++-|+|.|++|++++++++.+|++|+.+|+++.
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~  238 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPV  238 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchh
Confidence            35899999999999999999999999999998653

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.23  E-value=0.02  Score=43.85  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=32.2

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|.| .|.||+.+++.++..|++|++.+++.
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~   73 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   73 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578999999 79999999999999999999999864

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=94.22  E-value=0.03  Score=52.04  Aligned_cols=33  Identities=27%  Similarity=0.256  Sum_probs=30.9

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|||||.|.+|..+|..+..-|.+|+.||+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            689999999999999999999999999999864

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.22  E-value=0.023  Score=48.18  Aligned_cols=43  Identities=26%  Similarity=0.444  Sum_probs=37.6

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      |.......|++++|.|+|+|.+|.++|+-|...|. ++..+|..
T Consensus        26 ~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d   69 (346)
T 1y8q_A           26 WGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHE   69 (346)
T ss_dssp             HCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            65555678999999999999999999999998898 79999864

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=94.20  E-value=0.032  Score=45.11  Aligned_cols=42  Identities=21%  Similarity=0.356  Sum_probs=35.1

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ....+.||++.|.| .|.||+++|+.|..-|++|+..+|....
T Consensus         8 ~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~   50 (269)
T 3vtz_A            8 HMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKS   50 (269)
T ss_dssp             --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            45789999999999 5789999999999999999999987543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.15  E-value=0.033  Score=46.95  Aligned_cols=36  Identities=25%  Similarity=0.261  Sum_probs=33.3

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .|.+|.|+|.|.||...++.++.+|++|++++++..
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~  215 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNK  215 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChH
Confidence            588999999999999999999999999999998654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.15  E-value=0.038  Score=46.19  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=32.6

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|+|.|.||+.+++.++.+|++|++.+++.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~  198 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD  198 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            47899999999999999999999999999999864

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.13  E-value=0.042  Score=45.43  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=30.6

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC--EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~--~V~~~~~~~  186 (210)
                      ...+|+|||.|.+|..+|..+..-|.  +|..+|+..
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            34689999999999999999987787  999999864

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=94.12  E-value=0.05  Score=44.30  Aligned_cols=45  Identities=22%  Similarity=0.257  Sum_probs=39.0

Q ss_pred             CCCCCcccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          142 KLGVPTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       142 ~w~~~~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|......++.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         5 ~~~~~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~   50 (291)
T 3rd5_A            5 GWTAADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDT   50 (291)
T ss_dssp             CCCGGGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCChhhccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            4665555679999999999 68899999999999999999999874

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=94.11  E-value=0.033  Score=47.05  Aligned_cols=31  Identities=29%  Similarity=0.380  Sum_probs=26.1

Q ss_pred             CeEEEEecChHHHHHHHHhccC-CCEEEEEcC
Q 028302          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~f-g~~V~~~~~  184 (210)
                      .+|||+|+|.||+.++|.+... +++|.+...
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d   35 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVND   35 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEEC
Confidence            4799999999999999998765 788777654

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=94.11  E-value=0.04  Score=48.30  Aligned_cols=35  Identities=26%  Similarity=0.346  Sum_probs=32.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+++|+|+|.|.||+.+++.|...|.+|..++|+.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~   36 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   36 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCH
Confidence            47899999999999999999999999999999864

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.11  E-value=0.028  Score=48.92  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=34.0

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++.+|+|.|||.|..|...|+.|+..|.+|.++|.+.
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~   38 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSS
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCC
Confidence            4678999999999999999999999999999999754

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=94.10  E-value=0.039  Score=44.95  Aligned_cols=58  Identities=19%  Similarity=0.149  Sum_probs=32.4

Q ss_pred             hhHHHHHHHHHhCCCCCCcccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          129 RKQNEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       129 R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |+++......+...+.......+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (283)
T 3v8b_A            4 HHHHSSGVDLGTENLYFQSMMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTR   62 (283)
T ss_dssp             -----------------------CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             ccCCccccccccchhhhhhhcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34444333333333333333568899999999 57899999999999999999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=94.10  E-value=0.071  Score=43.44  Aligned_cols=37  Identities=27%  Similarity=0.352  Sum_probs=33.6

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+|+|.|||-|.||-++|..++.+|.+|..+.+..
T Consensus       142 ~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  178 (312)
T 4gcm_A          142 FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRD  178 (312)
T ss_dssp             GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccc
Confidence            4568999999999999999999999999999998754

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.04  E-value=0.036  Score=47.00  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=33.0

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  231 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE  231 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            58899999999999999999999999 8999987654

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.03  E-value=0.042  Score=46.14  Aligned_cols=35  Identities=34%  Similarity=0.584  Sum_probs=32.4

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|+|.|.||...++.++.+|++|++.+++.
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~  202 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP  202 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            57899999999999999999999999999998764

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.01  E-value=0.046  Score=45.69  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=31.8

Q ss_pred             cCeEEEEecChHHHH-HHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~-vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .++|.+||.|.+|.. +|+.|+..|.+|.++|.+..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            578999999999995 99999999999999998653

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=94.00  E-value=0.059  Score=44.47  Aligned_cols=40  Identities=20%  Similarity=0.186  Sum_probs=36.0

Q ss_pred             cccccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ....+.+++|.|.|. |.||+.+++.|..-|.+|++++|..
T Consensus        14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            457889999999995 9999999999999999999999854

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.00  E-value=0.043  Score=46.19  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=32.5

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  206 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA  206 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            47899999999999999999999999 999998764

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=93.98  E-value=0.034  Score=49.03  Aligned_cols=39  Identities=21%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccC-CCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~f-g~~V~~~~~~~  186 (210)
                      ...+.+++|+|+|.|.+|+.+++.|... |.+|..++|+.
T Consensus        18 ~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~   57 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTL   57 (467)
T ss_dssp             -----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSH
T ss_pred             ccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            4567889999999999999999999876 78999999864

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=93.96  E-value=0.038  Score=46.81  Aligned_cols=36  Identities=22%  Similarity=0.451  Sum_probs=33.0

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~  227 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD  227 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            57899999999999999999999999 8999987654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=93.95  E-value=0.038  Score=46.79  Aligned_cols=36  Identities=25%  Similarity=0.404  Sum_probs=33.0

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~  228 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD  228 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH
Confidence            58899999999999999999999999 8999987654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.93  E-value=0.042  Score=45.85  Aligned_cols=36  Identities=25%  Similarity=0.361  Sum_probs=33.1

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -.|++|.|+|.|.||...++.++.+|++|++.+++.
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~  200 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDD  200 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            358899999999999999999999999999998864

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.92  E-value=0.041  Score=46.45  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=32.8

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|+|.|.||...++.++.+|++|++.+++.
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~  223 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSR  223 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence            58899999999999999999999999999999864

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=93.91  E-value=0.027  Score=52.32  Aligned_cols=34  Identities=24%  Similarity=0.235  Sum_probs=31.1

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      =++|||||.|.+|..+|..+..-|.+|+.||++.
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999998899999999864

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=93.91  E-value=0.037  Score=46.40  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=33.0

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|++|.|+|.|.||+.+++.++.+|+ +|++.+++.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~  202 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSD  202 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            78999999999999999999999999 999999864

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=93.84  E-value=0.04  Score=45.61  Aligned_cols=34  Identities=29%  Similarity=0.376  Sum_probs=27.3

Q ss_pred             cCeEEEEecChHHHHHHHHhcc-CCCEEE-EEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRP-FGVKII-ATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~-fg~~V~-~~~~~~  186 (210)
                      ..+|||||+|+||+.+++.++. -+++|. .+|+++
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~   44 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNP   44 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC--
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCH
Confidence            3589999999999999999885 478887 578764

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=93.84  E-value=0.029  Score=47.85  Aligned_cols=35  Identities=17%  Similarity=0.109  Sum_probs=31.9

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..++-|+|.|++|++++++++.+|++|..+|+++.
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~  233 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPN  233 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCcc
Confidence            35799999999999999999999999999998653

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=93.79  E-value=0.1  Score=39.40  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=31.5

Q ss_pred             cCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +++|.|.|- |.||+.+++.|..-|.+|++++|+..
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            478999996 99999999999988999999998754

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=93.76  E-value=0.035  Score=47.00  Aligned_cols=36  Identities=22%  Similarity=0.394  Sum_probs=32.9

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  227 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD  227 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH
Confidence            58899999999999999999999999 8999987654

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=93.75  E-value=0.058  Score=46.40  Aligned_cols=36  Identities=17%  Similarity=0.228  Sum_probs=33.0

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +.+++|+|+|-|.+|+.+++.++.+|.+|+.+| .+.
T Consensus        22 m~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~   57 (403)
T 3k5i_A           22 WNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADN   57 (403)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCC
Confidence            568999999999999999999999999999999 543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.73  E-value=0.045  Score=44.02  Aligned_cols=35  Identities=31%  Similarity=0.436  Sum_probs=32.2

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .++|.|.|.|.||+.+++.|..-|.+|++.+|+..
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            47899999999999999999999999999999764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.70  E-value=0.04  Score=44.12  Aligned_cols=38  Identities=26%  Similarity=0.341  Sum_probs=34.5

Q ss_pred             cccccCeEEEEec-C-hHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-G-NIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G-~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.|- | .||+++|+.|..-|++|+..+|+.
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            4689999999998 8 599999999999999999999864

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=93.67  E-value=0.037  Score=46.79  Aligned_cols=36  Identities=19%  Similarity=0.400  Sum_probs=32.9

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~  226 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD  226 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            58899999999999999999999999 8999987654

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=93.60  E-value=0.054  Score=46.08  Aligned_cols=31  Identities=26%  Similarity=0.355  Sum_probs=26.5

Q ss_pred             CeEEEEecChHHHHHHHHhccC-CCEEEEEcC
Q 028302          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~f-g~~V~~~~~  184 (210)
                      .+|||+|+|.||+.+.|.+..- +++|.+.+.
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaind   49 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIND   49 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEEC
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecC
Confidence            4899999999999999998765 788877663

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=93.58  E-value=0.065  Score=44.04  Aligned_cols=37  Identities=32%  Similarity=0.433  Sum_probs=32.1

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +.+++|.|.|- |.||+.+++.|..-|.+|++.+|+..
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            35789999995 99999999999999999999998754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.57  E-value=0.055  Score=44.61  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=32.6

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -.|++|.|+|.|.+|+..++.++.+|++|++.+ +..
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~  176 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASL  176 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-Chh
Confidence            358999999999999999999999999999998 543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.55  E-value=0.047  Score=45.65  Aligned_cols=35  Identities=34%  Similarity=0.472  Sum_probs=33.0

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~  199 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNP  199 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            78999999999999999999999999 999999864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=93.49  E-value=0.033  Score=45.67  Aligned_cols=36  Identities=19%  Similarity=0.412  Sum_probs=32.9

Q ss_pred             ccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .|++|.|+|. |.||+.+++.++.+|++|++.+++..
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~  161 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE  161 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999998 99999999999999999999998643

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=93.47  E-value=0.059  Score=42.18  Aligned_cols=37  Identities=35%  Similarity=0.478  Sum_probs=33.4

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCC--EEEEEcCCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~--~V~~~~~~~~  187 (210)
                      +.++++.|.| .|.||+++++.|..-|.  +|++++|+..
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~   55 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   55 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCC
Confidence            5678999999 79999999999999999  9999998754

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=93.47  E-value=0.06  Score=48.96  Aligned_cols=62  Identities=24%  Similarity=0.368  Sum_probs=46.1

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ...||.+.-+-|-+.|          -.-|.......|++++|.|||.|.+|..+|+.|...|. ++..+|+.
T Consensus       297 ~~la~~~~~Lnlklm~----------wRllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D  359 (615)
T 4gsl_A          297 LKIADQSVDLNLKLMK----------WRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  359 (615)
T ss_dssp             HHHHHHHHHHHHHHHH----------HHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HHHHhhhhhhhhHHHH----------HhhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            4556655555444443          23344444467999999999999999999999999998 78888874

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.46  E-value=0.1  Score=40.32  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=31.4

Q ss_pred             CeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++|.|.| .|.||+.+++.|..-|.+|++.+|+..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            7899999 699999999999999999999999754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.44  E-value=0.14  Score=43.98  Aligned_cols=38  Identities=26%  Similarity=0.456  Sum_probs=36.0

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      +..+.+.+|.|+|.|..|..+|+.+.++|. +|+.+|++
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            558999999999999999999999999999 89999997

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=93.39  E-value=0.044  Score=46.40  Aligned_cols=34  Identities=29%  Similarity=0.347  Sum_probs=27.6

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.++|+|+|.|.+|+.+|+.|+. ..+|..+|+..
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~   48 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNN   48 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCH
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCH
Confidence            34479999999999999999986 46888888753

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.38  E-value=0.064  Score=44.87  Aligned_cols=36  Identities=19%  Similarity=0.321  Sum_probs=32.9

Q ss_pred             ccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .|++|.|+|. |.||+.+++.++..|++|++.+++..
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~  205 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEG  205 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHH
Confidence            4789999998 89999999999999999999998653

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=93.37  E-value=0.12  Score=41.97  Aligned_cols=37  Identities=30%  Similarity=0.445  Sum_probs=33.5

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..++++.|||-|.||-++|..++.+|.+|..+.|...
T Consensus       150 ~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          150 FRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            4689999999999999999999999999999987543

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=93.35  E-value=0.078  Score=42.12  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=34.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus         9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~   47 (265)
T 2o23_A            9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   47 (265)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            57899999998 789999999999999999999998754

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=93.31  E-value=0.056  Score=44.19  Aligned_cols=53  Identities=11%  Similarity=0.159  Sum_probs=41.7

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCCC--------------C-CcccCceeEEecCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS--------------H-SQVSCQSSGMLGPLS  204 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~~--------------~-~~~~~~~~~~~~Plt  204 (210)
                      .++++.|+|.|..|+.++..|...|+ +|..++|+...              . .....|.+++..|..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~~DivInaTp~g  186 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADILVNVTSIG  186 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCTTCCCSEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhhcccCCEEEECCCCC
Confidence            47899999999999999999999998 79999997421              1 124567777776653

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=93.30  E-value=0.058  Score=45.09  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=32.8

Q ss_pred             ccCeEEEEecChHHHHHHHHhccC--CCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPF--GVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~f--g~~V~~~~~~~  186 (210)
                      .|.+|.|+|.|.||...++.++.+  |++|++.+++.
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~  206 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSK  206 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence            689999999999999999999999  99999999764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.29  E-value=0.053  Score=46.36  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=32.6

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  220 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNP  220 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence            58899999999999999999999999 999999764

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.28  E-value=0.074  Score=42.32  Aligned_cols=40  Identities=23%  Similarity=0.236  Sum_probs=34.3

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...++.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        13 ~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   53 (249)
T 1o5i_A           13 MELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   53 (249)
T ss_dssp             ---CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             HHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            34689999999999 58999999999999999999999864

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=93.28  E-value=0.064  Score=44.55  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -.|+++.|.|. |.||+.+++.++.+|++|++.+++.
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~  180 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD  180 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35899999997 9999999999999999999998763

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=93.25  E-value=0.16  Score=40.76  Aligned_cols=33  Identities=15%  Similarity=0.406  Sum_probs=27.2

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEE-EcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~-~~~~~  186 (210)
                      .+|+|+|+|++|+.+++.+...+-++.+ +|+..
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~   37 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTP   37 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCc
Confidence            5899999999999999998866447665 78764

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.22  E-value=0.052  Score=46.04  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=33.5

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      -.|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~  229 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSK  229 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            358899999999999999999999999 8999997654

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=93.21  E-value=0.065  Score=43.07  Aligned_cols=37  Identities=22%  Similarity=0.325  Sum_probs=34.1

Q ss_pred             ccccCeEEEEe---cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG---~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.|   .|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~   43 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   43 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCh
Confidence            57899999999   59999999999999999999999875

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=93.19  E-value=0.095  Score=42.23  Aligned_cols=38  Identities=24%  Similarity=0.211  Sum_probs=34.2

Q ss_pred             ccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.||++.|.|-   |.||+++|+.|..-|++|+..+|+..
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   43 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999996   69999999999999999999998753

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=93.19  E-value=0.07  Score=43.24  Aligned_cols=30  Identities=37%  Similarity=0.484  Sum_probs=24.0

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEE-EEc
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKII-ATK  183 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~-~~~  183 (210)
                      -+..+|+++|+|+||+.+++. +  ++++. +|+
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~-~--~leLv~v~~   40 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL-G--NFEKIYAYD   40 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH-S--CCSEEEEEC
T ss_pred             cccceEEEECcCHHHHHHHhc-C--CcEEEEEEe
Confidence            356899999999999999998 4  78764 444

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=93.18  E-value=0.056  Score=44.74  Aligned_cols=41  Identities=15%  Similarity=0.139  Sum_probs=30.8

Q ss_pred             cccccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ....+.+++|.|.|. |-||+.+++.|..-|.+|++++|+..
T Consensus        13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             --------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            457889999999996 99999999999999999999998764

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=93.14  E-value=0.067  Score=48.51  Aligned_cols=38  Identities=26%  Similarity=0.486  Sum_probs=34.6

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ...|++++|.|||.|.+|..+|+.|...|. ++..+|..
T Consensus       322 q~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          322 LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             HHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             HHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            378999999999999999999999999999 78899864

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.12  E-value=0.073  Score=45.42  Aligned_cols=35  Identities=29%  Similarity=0.457  Sum_probs=32.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|.+|.|+|.|.||...++.+|.+|+ +|++.+++.
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~  220 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP  220 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCH
Confidence            58899999999999999999999999 799998764

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=93.10  E-value=0.13  Score=37.69  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=30.6

Q ss_pred             cCeEEEEec----ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~----G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -++|+|||.    |++|..+++.++..|++|+.+++..
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~   59 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKY   59 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCC
Confidence            689999999    7999999999999999988888764

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=93.07  E-value=0.092  Score=43.74  Aligned_cols=32  Identities=25%  Similarity=0.478  Sum_probs=27.0

Q ss_pred             CeEEEEecChHHHHHHHHhccC-CCEEE-EEcCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRS  185 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~f-g~~V~-~~~~~  185 (210)
                      .+|||||+|++|+.+++.+... ++++. .+|++
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~   37 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRR   37 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESS
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            5799999999999999998866 78865 67776

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.06  E-value=0.079  Score=45.39  Aligned_cols=36  Identities=36%  Similarity=0.455  Sum_probs=33.1

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      -.|.+|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  248 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSE  248 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            458899999999999999999999999 999998764

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=93.02  E-value=0.087  Score=41.34  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=33.6

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.|+++.|.|- |.||+++|+.|..-|.+|+..+|+.
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999995 8999999999999999999999864

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=93.02  E-value=0.06  Score=42.56  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=23.1

Q ss_pred             CeEEEEecChHHHHHHHH--hccCCCEEE-EEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKR--LRPFGVKII-ATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~--~~~fg~~V~-~~~~~~~  187 (210)
                      .+++|||.|++|+.+++.  ....|+++. ++|..+.
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~  122 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINES  122 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTT
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHH
Confidence            579999999999999994  456788866 5676554

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=93.00  E-value=0.057  Score=44.92  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=33.1

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -.|++|.|+|. |.||+.+++.++.+|++|++.+++.
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~  184 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGA  184 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35899999998 9999999999999999999999864

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=92.99  E-value=0.075  Score=44.55  Aligned_cols=35  Identities=29%  Similarity=0.509  Sum_probs=32.5

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~  201 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRK  201 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence            58899999999999999999999999 899999864

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=92.97  E-value=0.069  Score=45.33  Aligned_cols=32  Identities=31%  Similarity=0.432  Sum_probs=26.7

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      ..+|||.|||+||+.+.|.+..-+++|.+++.
T Consensus        21 ~~kVaInGfGrIGr~vlr~l~e~~~~ivaInd   52 (356)
T 3hja_A           21 SMKLAINGFGRIGRNVFKIAFERGIDIVAIND   52 (356)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CeEEEEECCCHHHHHHHHHHHHCCCCEEEEeC
Confidence            46899999999999999998766889876653

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=92.97  E-value=0.09  Score=41.21  Aligned_cols=37  Identities=27%  Similarity=0.435  Sum_probs=33.7

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.|- |.||+++++.|..-|.+|+..+|+.
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999995 9999999999999999999999864

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=92.96  E-value=0.07  Score=43.03  Aligned_cols=40  Identities=20%  Similarity=0.270  Sum_probs=35.6

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ....+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        21 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~   61 (266)
T 3grp_A           21 SMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTRE   61 (266)
T ss_dssp             CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             chhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            44679999999999 67899999999999999999998864

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=92.95  E-value=0.082  Score=42.65  Aligned_cols=39  Identities=18%  Similarity=0.345  Sum_probs=35.4

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        25 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~   64 (281)
T 3ppi_A           25 IKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAA   64 (281)
T ss_dssp             CGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4679999999999 58999999999999999999999864

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=92.95  E-value=0.089  Score=44.16  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=28.6

Q ss_pred             CeEEEEecChHHHHHHHHhccC-CCEEE-EEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~f-g~~V~-~~~~~~  186 (210)
                      .+|||||+|.||+..++.++.. +++|. .+|+++
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~   40 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTE   40 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSH
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCH
Confidence            5899999999999999999987 88966 667764

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=92.93  E-value=0.11  Score=41.39  Aligned_cols=39  Identities=23%  Similarity=0.359  Sum_probs=34.9

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         7 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   46 (252)
T 3f1l_A            7 QDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNE   46 (252)
T ss_dssp             TTTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3568999999999 57899999999999999999999864

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=92.91  E-value=0.094  Score=41.69  Aligned_cols=46  Identities=20%  Similarity=0.319  Sum_probs=32.7

Q ss_pred             CCCCcccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          143 LGVPTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      |....-..-.+|++.|.| .|.||+++|+.|..-|++|+..+|+..+
T Consensus        12 ~~~~~~~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~   58 (251)
T 3orf_A           12 SGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP   58 (251)
T ss_dssp             ----------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             ccccccccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            433333444589999999 5789999999999999999999997654

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=92.88  E-value=0.1  Score=41.55  Aligned_cols=38  Identities=13%  Similarity=0.267  Sum_probs=34.5

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   42 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPP   42 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            57899999999 589999999999999999999998754

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.88  E-value=0.077  Score=41.66  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=32.5

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+|++.|.| .|.||+++|+.|..-|.+|+..+|+..
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~   38 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   38 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcc
Confidence            578999998 689999999999999999999998754

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=92.86  E-value=0.11  Score=41.78  Aligned_cols=39  Identities=28%  Similarity=0.294  Sum_probs=34.8

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .++.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus         4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   43 (264)
T 2dtx_A            4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDP   43 (264)
T ss_dssp             GGGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcc
Confidence            357899999998 789999999999999999999998754

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=92.83  E-value=0.1  Score=41.48  Aligned_cols=38  Identities=34%  Similarity=0.480  Sum_probs=34.3

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   40 (247)
T 3rwb_A            2 ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINA   40 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            358899999999 57899999999999999999999864

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=92.83  E-value=0.05  Score=45.54  Aligned_cols=37  Identities=35%  Similarity=0.511  Sum_probs=33.4

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -.|++|.|+|. |.||+..++.++.+|++|++.+++..
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~  195 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTA  195 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            35899999998 99999999999999999999998653

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=92.82  E-value=0.082  Score=42.93  Aligned_cols=38  Identities=26%  Similarity=0.306  Sum_probs=32.5

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.+++|.|.|. |.||+.+++.|..-|.+|++.+|+..
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            456899999996 99999999999999999999999765

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=92.80  E-value=0.093  Score=41.39  Aligned_cols=37  Identities=24%  Similarity=0.396  Sum_probs=33.9

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~   45 (254)
T 2wsb_A            8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREA   45 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999998 69999999999999999999999864

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=92.80  E-value=0.051  Score=43.68  Aligned_cols=40  Identities=30%  Similarity=0.335  Sum_probs=35.4

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ..+.+|++.|.| .|.||+++|+.|..-|.+|+..+|+..+
T Consensus        24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   64 (260)
T 3un1_A           24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKP   64 (260)
T ss_dssp             HHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             hCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            458899999999 5889999999999999999999987543

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=92.78  E-value=0.099  Score=43.80  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=30.2

Q ss_pred             CeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ++|+|||.|.+|..+|..+..-|. +|..||+..
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            689999999999999999987787 999999865

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=92.78  E-value=0.093  Score=41.52  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=34.6

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -.+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~   43 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINA   43 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence            468899999999 58999999999999999999999864

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=92.76  E-value=0.071  Score=44.91  Aligned_cols=35  Identities=26%  Similarity=0.317  Sum_probs=32.6

Q ss_pred             ccCeEEEEecChHHHHHHHHhccC-CCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~f-g~~V~~~~~~~  186 (210)
                      .|.+|.|+|.|.||...++.++.+ |++|++.+++.
T Consensus       186 ~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~  221 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE  221 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            578999999999999999999999 99999999864

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=92.75  E-value=0.11  Score=43.56  Aligned_cols=37  Identities=22%  Similarity=0.232  Sum_probs=33.4

Q ss_pred             cccCeEEEEecChHHHHH-HHHh-ccCCCE-EEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVEL-AKRL-RPFGVK-IIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~v-A~~~-~~fg~~-V~~~~~~~~  187 (210)
                      ..+.+|.|+|.|.||... ++.+ +.+|++ |++.+++..
T Consensus       171 ~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~  210 (357)
T 2b5w_A          171 WDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDR  210 (357)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcc
Confidence            345899999999999999 9999 999998 999998765

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=92.75  E-value=0.1  Score=43.07  Aligned_cols=35  Identities=17%  Similarity=0.140  Sum_probs=27.6

Q ss_pred             cCeEEEEecChHHHH-HHHHhcc-CCCEEE-EEcCCCC
Q 028302          153 GKTVFILGFGNIGVE-LAKRLRP-FGVKII-ATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~-vA~~~~~-fg~~V~-~~~~~~~  187 (210)
                      ..+|||||+|.||+. +++.++. -++++. ++|+++.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~   42 (319)
T 1tlt_A            5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRA   42 (319)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCT
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHH
Confidence            358999999999996 8887764 478876 7887654

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=92.73  E-value=0.059  Score=44.98  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=33.4

Q ss_pred             cccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -.|++|.|+|.| .||...++.++.+|++|++.+++..
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~  180 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNK  180 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            358899999998 9999999999999999999998654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=92.72  E-value=0.081  Score=42.20  Aligned_cols=38  Identities=32%  Similarity=0.416  Sum_probs=33.7

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   42 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGE   42 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999999 678999999999999999999998754

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=92.71  E-value=0.091  Score=44.63  Aligned_cols=35  Identities=34%  Similarity=0.379  Sum_probs=32.3

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~  186 (210)
                      .|++|.|+|.|.+|...++.++.+| .+|++.+++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  230 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP  230 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCH
Confidence            5889999999999999999999999 5999999764

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=92.69  E-value=0.098  Score=44.31  Aligned_cols=35  Identities=37%  Similarity=0.431  Sum_probs=32.4

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  217 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQA  217 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            58899999999999999999999999 899998764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=92.68  E-value=0.084  Score=42.09  Aligned_cols=41  Identities=22%  Similarity=0.203  Sum_probs=35.4

Q ss_pred             CcccccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          146 PTGETLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       146 ~~~~~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .....+.+|++.|.|-   |.||+++|+.|..-|++|+..+|+.
T Consensus         7 ~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A            7 HHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             --CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            3457899999999995   6899999999999999999998874

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=92.68  E-value=0.071  Score=45.04  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=32.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~  225 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE  225 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence            57899999999999999999999999 699998764

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=92.67  E-value=0.13  Score=37.65  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             ccCeEEEEec----ChHHHHHHHHhccCCCEEEEEcCC
Q 028302          152 LGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       152 ~~~tvGIiG~----G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      +-++|.|||.    |+.|..+++.++..|++|+.+++.
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~   49 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPR   49 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGG
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCC
Confidence            4679999999    899999999999999998888876

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=92.64  E-value=0.088  Score=41.74  Aligned_cols=39  Identities=23%  Similarity=0.400  Sum_probs=34.6

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~   49 (265)
T 1h5q_A           10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   49 (265)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcch
Confidence            357899999998 789999999999999999999998643

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=92.63  E-value=0.1  Score=41.34  Aligned_cols=37  Identities=22%  Similarity=0.315  Sum_probs=33.7

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~   47 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDE   47 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999998 69999999999999999999999864

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=92.63  E-value=0.23  Score=43.65  Aligned_cols=66  Identities=17%  Similarity=0.173  Sum_probs=56.4

Q ss_pred             CcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-
Q 028302           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (210)
Q Consensus        99 gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-  177 (210)
                      .|++.|-      .-+-+|=-+++.+|+.+|-.                ++.|.+.+|.+.|.|.-|..+|+.+...|+ 
T Consensus       187 ~ipvFnD------D~qGTA~V~lAgllnAlki~----------------gk~l~d~riV~~GAGaAGigia~ll~~~G~~  244 (487)
T 3nv9_A          187 DIPVWHD------DQQGTASVTLAGLLNALKLV----------------KKDIHECRMVFIGAGSSNTTCLRLIVTAGAD  244 (487)
T ss_dssp             SSCEEET------TTHHHHHHHHHHHHHHHHHH----------------TCCGGGCCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             cCCcccc------ccchHHHHHHHHHHHHHHHh----------------CCChhhcEEEEECCCHHHHHHHHHHHHcCCC
Confidence            7888884      23667778888888888744                688999999999999999999999999999 


Q ss_pred             --EEEEEcCCC
Q 028302          178 --KIIATKRSW  186 (210)
Q Consensus       178 --~V~~~~~~~  186 (210)
                        +|+.+|+.+
T Consensus       245 ~~~i~l~D~~G  255 (487)
T 3nv9_A          245 PKKIVMFDSKG  255 (487)
T ss_dssp             GGGEEEEETTE
T ss_pred             cccEEEEeccc
Confidence              799999863

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=92.62  E-value=0.11  Score=42.06  Aligned_cols=39  Identities=21%  Similarity=0.341  Sum_probs=34.7

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      +|+||++.|-| -+.||+++|++|..-|++|+..+|+..+
T Consensus         8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   47 (261)
T 4h15_A            8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPE   47 (261)
T ss_dssp             CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchh
Confidence            68999999999 5579999999999999999999986543

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=92.62  E-value=0.11  Score=41.72  Aligned_cols=40  Identities=25%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus         6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   46 (271)
T 3tzq_B            6 TAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPET   46 (271)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            3468999999999 588999999999999999999998754

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=92.62  E-value=0.067  Score=44.58  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=32.4

Q ss_pred             ccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|+|. |.||+.+++.++.+|++|++.+++.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~  190 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK  190 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5899999997 9999999999999999999999864

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=92.61  E-value=0.079  Score=42.71  Aligned_cols=40  Identities=28%  Similarity=0.461  Sum_probs=33.9

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~   63 (266)
T 3uxy_A           23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVA   63 (266)
T ss_dssp             ---CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCT
T ss_pred             hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3578999999999 578999999999999999999998754

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=92.58  E-value=0.083  Score=44.13  Aligned_cols=33  Identities=15%  Similarity=0.252  Sum_probs=28.0

Q ss_pred             CeEEEEecChHHHHHHHHhccC-CCEEE-EEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~f-g~~V~-~~~~~~  186 (210)
                      .+|||||+|.||+..++.++.. +++|. .+|+++
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~   39 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFI   39 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSH
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCH
Confidence            5899999999999999998866 78877 577754

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=92.57  E-value=0.08  Score=42.44  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=32.7

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+|+|.|.| .|.||+++++.|..-|.+|+..+|+..
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~   38 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPL   38 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCc
Confidence            468999999 799999999999999999999998764

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=92.57  E-value=0.12  Score=41.72  Aligned_cols=38  Identities=37%  Similarity=0.483  Sum_probs=34.7

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus         3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (274)
T 3e03_A            3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAV   41 (274)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCS
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccch
Confidence            57899999999 689999999999999999999998764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.57  E-value=0.078  Score=44.59  Aligned_cols=35  Identities=29%  Similarity=0.361  Sum_probs=32.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~  186 (210)
                      .|++|.|+|.|.+|...++.+|.+|++ |++.+++.
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  214 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDE  214 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            588999999999999999999999998 99988764

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=92.54  E-value=0.075  Score=41.85  Aligned_cols=34  Identities=18%  Similarity=0.216  Sum_probs=26.2

Q ss_pred             cCeEEEEecChHHHHHHHH--hccCCCEEE-EEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKR--LRPFGVKII-ATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~--~~~fg~~V~-~~~~~~~  187 (210)
                      .++++|+|.|++|+.+++.  ... |+++. ++|..+.
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~  116 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPE  116 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTT
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHH
Confidence            3689999999999999995  445 88866 4665543

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=92.53  E-value=0.13  Score=40.40  Aligned_cols=38  Identities=13%  Similarity=0.157  Sum_probs=32.9

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ...+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus         4 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (241)
T 1dhr_A            4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   42 (241)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            35689999999 689999999999999999999998754

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=92.52  E-value=0.11  Score=41.85  Aligned_cols=38  Identities=26%  Similarity=0.474  Sum_probs=34.5

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~   66 (279)
T 1xg5_A           28 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   66 (279)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCh
Confidence            468999999998 79999999999999999999999863

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=92.52  E-value=0.11  Score=41.83  Aligned_cols=40  Identities=20%  Similarity=0.372  Sum_probs=35.0

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ....+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        15 ~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   55 (267)
T 1vl8_A           15 EVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   55 (267)
T ss_dssp             --CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45678999999999 78999999999999999999999864

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=92.50  E-value=0.11  Score=42.87  Aligned_cols=39  Identities=31%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+.+++|.|.| .|.||+.+++.|..-|.+|++++|...
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   56 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFAT   56 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            557789999998 799999999999999999999998643

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=92.48  E-value=0.11  Score=41.37  Aligned_cols=37  Identities=24%  Similarity=0.451  Sum_probs=33.3

Q ss_pred             ccccCeEEEEec-Ch--HHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~--IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++.||++.|.|- |.  ||+++|+.|..-|++|+..+|+.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            588999999996 55  99999999999999999998864

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=92.45  E-value=0.13  Score=40.81  Aligned_cols=38  Identities=24%  Similarity=0.377  Sum_probs=34.1

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   42 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT   42 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchh
Confidence            47899999999 689999999999999999999998753

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=92.45  E-value=0.15  Score=45.58  Aligned_cols=39  Identities=23%  Similarity=0.340  Sum_probs=36.1

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+.+|+|+|||-|.+|-++|..+...+.+|..+.|++.
T Consensus       174 ~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          174 KSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            467899999999999999999999999999999998765

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=92.44  E-value=0.1  Score=43.34  Aligned_cols=38  Identities=26%  Similarity=0.293  Sum_probs=34.0

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.+++|.|.| .|.||+.+++.|..-|.+|++++|+..
T Consensus         6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   44 (357)
T 1rkx_A            6 FWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   44 (357)
T ss_dssp             HHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hhCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            35689999999 799999999999999999999998654

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=92.44  E-value=0.1  Score=43.58  Aligned_cols=35  Identities=29%  Similarity=0.569  Sum_probs=32.6

Q ss_pred             ccCeEEEE-ecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFIL-GFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIi-G~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|+ |.|.||...++.++.+|++|++.+++.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~  185 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRN  185 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            68999999 799999999999999999999999854

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=92.44  E-value=0.098  Score=41.59  Aligned_cols=37  Identities=30%  Similarity=0.406  Sum_probs=33.4

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   39 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP   39 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            6789999999 589999999999999999999998754

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=92.43  E-value=0.089  Score=43.68  Aligned_cols=33  Identities=21%  Similarity=0.200  Sum_probs=28.3

Q ss_pred             CeEEEEecChHHHHHHHHhccC-CCEEE-EEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~f-g~~V~-~~~~~~  186 (210)
                      .+|||||+|.||+..++.++.. +++|. .+|+++
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~   38 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFP   38 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSH
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCH
Confidence            5899999999999999998875 88887 578764

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=92.43  E-value=0.19  Score=40.67  Aligned_cols=38  Identities=26%  Similarity=0.210  Sum_probs=34.1

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.+|++.|.| .|.||+++|+.|..-|.+|+..+|+.
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   78 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   78 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            467899999998 78999999999999999999988753

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=92.42  E-value=0.11  Score=42.52  Aligned_cols=39  Identities=26%  Similarity=0.301  Sum_probs=35.2

Q ss_pred             ccccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.||++.|.|-+   .||+++|+.|..-|++|+..+|+.
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            356899999999986   899999999999999999999874

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=92.41  E-value=0.15  Score=41.37  Aligned_cols=39  Identities=36%  Similarity=0.508  Sum_probs=34.8

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -.+.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   44 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAE   44 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            358899999999 688999999999999999999999765

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=92.36  E-value=0.088  Score=46.13  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=31.7

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +-.+|+|||+|-+|-.+|..+...|.+|+++|...
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            45799999999999999999999999999999753

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=92.33  E-value=0.11  Score=41.68  Aligned_cols=39  Identities=21%  Similarity=0.204  Sum_probs=35.3

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.+|++.|.| .|.||+++|+.|...|++|+..+|+.
T Consensus        26 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   65 (272)
T 1yb1_A           26 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   65 (272)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCH
Confidence            3568999999998 78999999999999999999999864

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=92.30  E-value=0.13  Score=41.03  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=34.1

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|.+|+..+|+..
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (256)
T 2d1y_A            3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   41 (256)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            47899999998 689999999999999999999998754

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=92.27  E-value=0.13  Score=40.83  Aligned_cols=38  Identities=21%  Similarity=0.247  Sum_probs=34.2

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++.+|++.|.| .|.||+++|+.|..-|.+|+..+|+.
T Consensus         3 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~   41 (264)
T 2pd6_A            3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDR   41 (264)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            357899999998 78999999999999999999999864

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=92.27  E-value=0.23  Score=42.72  Aligned_cols=66  Identities=17%  Similarity=0.229  Sum_probs=51.6

Q ss_pred             CcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-
Q 028302           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (210)
Q Consensus        99 gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-  177 (210)
                      ++++.|. +.     .-+|=-+++.+++..|                ..+..+.+.+|.|+|.|..|..+|+++.++|. 
T Consensus       156 ~ipvf~D-Di-----qGTa~V~lAall~al~----------------l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~  213 (398)
T 2a9f_A          156 HIPVFHD-DQ-----HGTAIVVLAAIFNSLK----------------LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGAT  213 (398)
T ss_dssp             SSCEEEH-HH-----HHHHHHHHHHHHHHHH----------------TTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             Ccceecc-hh-----hhHHHHHHHHHHHHHH----------------HhCCCCCccEEEEECCCHHHHHHHHHHHHcCCC
Confidence            5788772 22     3445556666666665                13678999999999999999999999999999 


Q ss_pred             EEEEEcCCC
Q 028302          178 KIIATKRSW  186 (210)
Q Consensus       178 ~V~~~~~~~  186 (210)
                      +|+.+|++.
T Consensus       214 ~I~v~D~~G  222 (398)
T 2a9f_A          214 KVTVVDKFG  222 (398)
T ss_dssp             EEEEEETTE
T ss_pred             eEEEEECCC
Confidence            999999873

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=92.27  E-value=0.097  Score=41.50  Aligned_cols=39  Identities=28%  Similarity=0.485  Sum_probs=34.9

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+.+|++.|.| .|.||+++|+.|..-|.+|+..+|+..
T Consensus        11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   50 (247)
T 1uzm_A           11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   50 (247)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            468899999999 689999999999999999999998653

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=92.27  E-value=0.078  Score=44.07  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=33.0

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -.|++|.|+| .|.||..+++.++.+|++|++.+++.
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~  183 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTD  183 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3589999999 89999999999999999999999864

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=92.24  E-value=0.13  Score=40.38  Aligned_cols=39  Identities=23%  Similarity=0.406  Sum_probs=35.2

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~   48 (247)
T 3i1j_A            9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTE   48 (247)
T ss_dssp             TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCH
Confidence            3568999999999 58999999999999999999999864

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=92.23  E-value=0.098  Score=44.08  Aligned_cols=31  Identities=29%  Similarity=0.315  Sum_probs=25.6

Q ss_pred             CeEEEEecChHHHHHHHHhcc-CCCEEEEEcC
Q 028302          154 KTVFILGFGNIGVELAKRLRP-FGVKIIATKR  184 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~-fg~~V~~~~~  184 (210)
                      .+|||+|+|.||+.++|.+.. =+++|.+...
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d   35 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   35 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecC
Confidence            589999999999999999764 4688776654

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=92.22  E-value=0.1  Score=43.82  Aligned_cols=35  Identities=29%  Similarity=0.591  Sum_probs=32.4

Q ss_pred             ccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|.|. |.||+.+++.++.+|++|++.+++.
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~  205 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE  205 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4889999997 9999999999999999999999864

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=92.21  E-value=0.099  Score=41.21  Aligned_cols=37  Identities=32%  Similarity=0.408  Sum_probs=33.7

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ..+.+|++.|.| .|.||+++++.|..-|.+|+..+|+
T Consensus         3 ~~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (258)
T 3afn_B            3 PDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRK   40 (258)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCC
Confidence            357899999998 6999999999999999999999987

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=92.21  E-value=0.15  Score=39.87  Aligned_cols=38  Identities=29%  Similarity=0.203  Sum_probs=32.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCC-CEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg-~~V~~~~~~~~  187 (210)
                      +...++|.|.| .|.||+++++.|..-| .+|+.++|+..
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~   59 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPA   59 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGG
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChh
Confidence            34568999999 7999999999999999 89999998754

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=92.20  E-value=0.15  Score=42.89  Aligned_cols=42  Identities=29%  Similarity=0.370  Sum_probs=37.0

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ....+.||++.|.| .|.||+++|+.|..-|++|+..+|+..+
T Consensus        39 ~~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~   81 (346)
T 3kvo_A           39 NTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQP   81 (346)
T ss_dssp             CCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             cCCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            34679999999999 5899999999999999999999987653

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=92.20  E-value=0.16  Score=40.45  Aligned_cols=38  Identities=16%  Similarity=0.205  Sum_probs=33.7

Q ss_pred             cccccCeEEEEec-----------------ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-----------------GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-----------------G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|-|-                 |.||.++|+.+...|++|+.+++..
T Consensus         4 ~~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~   58 (226)
T 1u7z_A            4 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPV   58 (226)
T ss_dssp             CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             cCCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCc
Confidence            3589999999998                 7899999999999999999987643

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=92.18  E-value=0.12  Score=42.72  Aligned_cols=38  Identities=26%  Similarity=0.287  Sum_probs=34.1

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.+++|.|.| .|-||+.+++.|..-|.+|++++|+..
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            35689999999 699999999999999999999998654

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=92.17  E-value=0.11  Score=39.61  Aligned_cols=37  Identities=30%  Similarity=0.331  Sum_probs=32.8

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCC--EEEEEcCCCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWAS  188 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~--~V~~~~~~~~~  188 (210)
                      .+++|.|.| .|.||+++++.|..-|.  +|++.+|+..+
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~   43 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA   43 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc
Confidence            468999999 89999999999999898  99999987653

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=92.16  E-value=0.13  Score=41.04  Aligned_cols=37  Identities=27%  Similarity=0.422  Sum_probs=33.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (263)
T 3ai3_A            4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQV   41 (263)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            47899999998 68999999999999999999999864

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=92.15  E-value=0.13  Score=40.68  Aligned_cols=37  Identities=27%  Similarity=0.268  Sum_probs=34.0

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   41 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            57899999998 78999999999999999999999876

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=92.14  E-value=0.12  Score=41.12  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=33.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   46 (263)
T 3ak4_A            9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDV   46 (263)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999 68999999999999999999999864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=92.14  E-value=0.11  Score=43.53  Aligned_cols=33  Identities=18%  Similarity=0.155  Sum_probs=29.8

Q ss_pred             CeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .+|+|||.|.+|..+|..+..-|. +|..||+..
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            589999999999999999987776 899999864

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=92.13  E-value=0.093  Score=44.03  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=28.8

Q ss_pred             cCeEEEEecChHHHHHHHHhccC--CCEEE-EEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPF--GVKII-ATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~f--g~~V~-~~~~~~  186 (210)
                      ..+|||||+|.||+..++.++..  ++++. ++|+++
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~   49 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDP   49 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSH
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCH
Confidence            46899999999999999999876  88876 677764

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=92.10  E-value=0.14  Score=40.91  Aligned_cols=39  Identities=26%  Similarity=0.405  Sum_probs=32.9

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+.+|++.|.| .|.||+++|+.|..-|.+|+..+|+..
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   56 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGE   56 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            567899999999 689999999999999999999998654

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=92.09  E-value=0.13  Score=42.90  Aligned_cols=34  Identities=21%  Similarity=0.208  Sum_probs=31.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ..++|+|+|.|.+|..+|..+...|. +|..+|+.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            46799999999999999999987788 99999987

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=92.08  E-value=0.08  Score=42.53  Aligned_cols=40  Identities=28%  Similarity=0.357  Sum_probs=32.3

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .-.+.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        22 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   62 (260)
T 3gem_A           22 HMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH   62 (260)
T ss_dssp             -----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            3568999999999 588999999999999999999998764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=92.05  E-value=0.13  Score=41.48  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=34.6

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+|+||++.|-| -+.||+++|+.|..-|++|+.+|++.
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~   41 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLE   41 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            479999999999 56799999999999999999999864

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=92.05  E-value=0.15  Score=41.15  Aligned_cols=39  Identities=28%  Similarity=0.404  Sum_probs=34.8

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        22 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   61 (277)
T 4fc7_A           22 PDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSL   61 (277)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3568999999999 56899999999999999999999874

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=92.05  E-value=0.15  Score=41.75  Aligned_cols=39  Identities=31%  Similarity=0.316  Sum_probs=35.2

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ....+.||++.|.| .|.||+++|+.|..-|++|+..+++
T Consensus        22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   61 (299)
T 3t7c_A           22 MAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVC   61 (299)
T ss_dssp             CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            44679999999999 5789999999999999999999986

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=92.02  E-value=0.1  Score=42.29  Aligned_cols=40  Identities=28%  Similarity=0.326  Sum_probs=35.5

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+...
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   69 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGS   69 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            468999999999 5899999999999999999999987543

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=92.02  E-value=0.14  Score=40.76  Aligned_cols=37  Identities=30%  Similarity=0.402  Sum_probs=33.5

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   39 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999 58999999999999999999999864

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=92.00  E-value=0.13  Score=41.12  Aligned_cols=38  Identities=26%  Similarity=0.281  Sum_probs=34.0

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   47 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   47 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            458899999998 78999999999999999999999864

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=91.97  E-value=0.13  Score=40.96  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=34.4

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   42 (259)
T 4e6p_A            4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDI   42 (259)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            458899999999 68999999999999999999999864

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=91.95  E-value=0.12  Score=43.25  Aligned_cols=41  Identities=27%  Similarity=0.340  Sum_probs=33.4

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccC-CCEEEEEcCCCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWAS  188 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~f-g~~V~~~~~~~~~  188 (210)
                      ...+.+++|.|.| .|-||+.+++.|..- |.+|++++|+...
T Consensus        19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   61 (372)
T 3slg_A           19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDR   61 (372)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTT
T ss_pred             CcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhh
Confidence            3557789999999 799999999999887 8999999997543

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=91.94  E-value=0.1  Score=41.13  Aligned_cols=37  Identities=32%  Similarity=0.425  Sum_probs=33.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~   40 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999998 78999999999999999999999864

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=91.93  E-value=0.11  Score=40.93  Aligned_cols=38  Identities=26%  Similarity=0.326  Sum_probs=34.1

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.++++.|.| .|.||+++++.|..-|.+|+..+|+.
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~   45 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            357899999998 69999999999999999999999864

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=91.92  E-value=0.15  Score=39.79  Aligned_cols=36  Identities=25%  Similarity=0.138  Sum_probs=32.1

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccC--CCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPF--GVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~f--g~~V~~~~~~~  186 (210)
                      ..+++|.|.| .|.||+.+++.|..-  |.+|+..+|+.
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~   40 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA   40 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCH
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence            4578999999 799999999999988  89999999864

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=91.90  E-value=0.16  Score=42.49  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=29.9

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ..++|+|||.|.+|..+|..+..-|+ +|..+|...
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            45799999999999999999875555 999999865

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=91.89  E-value=0.098  Score=41.73  Aligned_cols=38  Identities=26%  Similarity=0.428  Sum_probs=34.2

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   40 (257)
T 3imf_A            2 NAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTK   40 (257)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            358899999999 58899999999999999999999874

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.88  E-value=0.14  Score=41.23  Aligned_cols=37  Identities=24%  Similarity=0.243  Sum_probs=34.1

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+++
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            568999999999 5789999999999999999999886

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=91.86  E-value=0.14  Score=41.41  Aligned_cols=39  Identities=26%  Similarity=0.304  Sum_probs=35.1

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .++.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   67 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSD   67 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468999999999 689999999999999999999998643

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=91.86  E-value=0.14  Score=40.82  Aligned_cols=38  Identities=32%  Similarity=0.403  Sum_probs=34.1

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (262)
T 1zem_A            3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   41 (262)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999998 68999999999999999999999864

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=91.85  E-value=0.14  Score=41.61  Aligned_cols=39  Identities=23%  Similarity=0.427  Sum_probs=35.1

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.|+++.|.| .|.||+++|+.|..-|.+|+..+|+.
T Consensus        21 ~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~   60 (302)
T 1w6u_A           21 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   60 (302)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3568999999999 68999999999999999999999864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=91.85  E-value=0.13  Score=45.17  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=31.6

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+|-|+|+|.+|+.+|+.|..-|.+|...|+.+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4689999999999999999999999999999875

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=91.84  E-value=0.15  Score=40.56  Aligned_cols=38  Identities=32%  Similarity=0.427  Sum_probs=34.4

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -.+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~   43 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDK   43 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            468899999999 57899999999999999999999874

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=91.83  E-value=0.11  Score=43.02  Aligned_cols=39  Identities=21%  Similarity=0.325  Sum_probs=34.5

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ....+.||++.|.| .|.||+++|+.|..-|++|+..++.
T Consensus        21 ~m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~   60 (322)
T 3qlj_A           21 SMGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG   60 (322)
T ss_dssp             -CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            34578999999999 5789999999999999999999886

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=91.82  E-value=0.15  Score=41.59  Aligned_cols=38  Identities=29%  Similarity=0.309  Sum_probs=34.6

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   81 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDE   81 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            568999999999 58899999999999999999998865

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=91.82  E-value=0.15  Score=40.61  Aligned_cols=41  Identities=20%  Similarity=0.236  Sum_probs=33.2

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCC---CEEEEEcCCCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFG---VKIIATKRSWA  187 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg---~~V~~~~~~~~  187 (210)
                      ....+.++++.|.| .|.||+++|+.|...|   .+|+..+|+..
T Consensus        15 ~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~   59 (267)
T 1sny_A           15 VPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNRE   59 (267)
T ss_dssp             -----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTT
T ss_pred             cccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChh
Confidence            44678999999998 7999999999999999   99999998754

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=91.81  E-value=0.15  Score=40.31  Aligned_cols=36  Identities=25%  Similarity=0.283  Sum_probs=32.9

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~   39 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6789999999 68999999999999999999999864

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=91.80  E-value=0.11  Score=41.99  Aligned_cols=39  Identities=38%  Similarity=0.538  Sum_probs=35.0

Q ss_pred             ccccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.|+++.|.|- |.||+++|+.|...|++|+..+|+.
T Consensus        23 ~~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~   62 (286)
T 1xu9_A           23 PEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   62 (286)
T ss_dssp             GGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hhhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35688999999995 8999999999999999999999864

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=91.79  E-value=0.12  Score=41.36  Aligned_cols=38  Identities=21%  Similarity=0.458  Sum_probs=34.1

Q ss_pred             cccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.+|++.|.|-   |.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   44 (261)
T 2wyu_A            4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (261)
T ss_dssp             ECCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCG
T ss_pred             cCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3578999999997   6999999999999999999999865

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=91.78  E-value=0.15  Score=41.20  Aligned_cols=38  Identities=29%  Similarity=0.319  Sum_probs=34.7

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   44 (281)
T 3s55_A            6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCE   44 (281)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence            468999999999 68899999999999999999999864

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=91.78  E-value=0.16  Score=41.05  Aligned_cols=38  Identities=32%  Similarity=0.359  Sum_probs=34.4

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..|++
T Consensus         6 ~~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~   44 (286)
T 3uve_A            6 TGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDIC   44 (286)
T ss_dssp             CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CcccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEecc
Confidence            3568999999999 5789999999999999999999886

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.78  E-value=0.14  Score=40.79  Aligned_cols=38  Identities=24%  Similarity=0.414  Sum_probs=34.4

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   42 (255)
T 4eso_A            4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNE   42 (255)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            358899999999 68899999999999999999999874

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=91.77  E-value=0.11  Score=41.49  Aligned_cols=39  Identities=26%  Similarity=0.507  Sum_probs=34.9

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   63 (262)
T 3rkr_A           24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDV   63 (262)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            3568999999999 68999999999999999999999874

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=91.76  E-value=0.098  Score=43.65  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=32.5

Q ss_pred             ccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|+|. |.||+.+++.++.+|++|++.+++.
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~  201 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE  201 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5889999999 9999999999999999999998864

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=91.76  E-value=0.16  Score=42.36  Aligned_cols=39  Identities=23%  Similarity=0.372  Sum_probs=34.8

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhcc--CCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRP--FGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~--fg~~V~~~~~~~~  187 (210)
                      .++.+++|.|.| .|-||+.+++.|..  -|.+|++.+|...
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            367899999996 79999999999998  8999999998654

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=91.76  E-value=0.081  Score=43.83  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=32.5

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|+| .|.||+.+++.++.+|++|++.+++.
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~  175 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSP  175 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999999 89999999999999999999999764

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=91.72  E-value=0.15  Score=40.54  Aligned_cols=37  Identities=24%  Similarity=0.419  Sum_probs=33.7

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~   43 (260)
T 2ae2_A            6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   43 (260)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999998 68999999999999999999999864

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=91.70  E-value=0.12  Score=41.23  Aligned_cols=37  Identities=22%  Similarity=0.289  Sum_probs=33.6

Q ss_pred             ccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.|-   |.||+++|+.|..-|++|+..+|+.
T Consensus         6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            6 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   45 (265)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence            478999999996   6999999999999999999999875

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=91.70  E-value=0.12  Score=45.25  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=35.7

Q ss_pred             ccccccCeEEEEecC----------hHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G----------~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +..+.|++|+|+|+-          +-...+++.|...|++|.+|||..
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~  365 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEG  365 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSC
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCC
Confidence            456899999999997          778999999999999999999976

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=91.69  E-value=0.15  Score=40.86  Aligned_cols=38  Identities=18%  Similarity=0.181  Sum_probs=34.3

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   42 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDG   42 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            368899999998 68899999999999999999999864

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=91.69  E-value=0.08  Score=44.67  Aligned_cols=35  Identities=23%  Similarity=0.181  Sum_probs=32.5

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|+| .|.||..+++.++.+|++|++.+++.
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  198 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSD  198 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCH
Confidence            588999999 79999999999999999999999864

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=91.69  E-value=0.11  Score=40.86  Aligned_cols=37  Identities=30%  Similarity=0.415  Sum_probs=33.5

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~   39 (247)
T 3lyl_A            2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQ   39 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999998 68999999999999999999999864

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=91.67  E-value=0.15  Score=41.17  Aligned_cols=38  Identities=21%  Similarity=0.276  Sum_probs=34.2

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   45 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNP   45 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468899999999 68999999999999999999999864

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=91.66  E-value=0.15  Score=41.81  Aligned_cols=39  Identities=15%  Similarity=0.283  Sum_probs=35.1

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        26 m~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~   65 (301)
T 3tjr_A           26 LSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQ   65 (301)
T ss_dssp             CCCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             HhccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3568999999999 57899999999999999999999874

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=91.66  E-value=0.16  Score=40.60  Aligned_cols=38  Identities=29%  Similarity=0.407  Sum_probs=34.2

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.+|++.|.| .|.||+++|+.|..-|.+|+..+|..
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   50 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   50 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCh
Confidence            458899999998 68999999999999999999998864

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=91.66  E-value=0.16  Score=40.23  Aligned_cols=37  Identities=30%  Similarity=0.396  Sum_probs=33.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~   41 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRV   41 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999998 68999999999999999999999864

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=91.65  E-value=0.15  Score=41.32  Aligned_cols=37  Identities=24%  Similarity=0.415  Sum_probs=33.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   39 (281)
T 3zv4_A            2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSA   39 (281)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCH
Confidence            37899999999 68899999999999999999999864

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=91.65  E-value=0.15  Score=40.56  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=33.5

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|.+|+..+|+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (260)
T 2z1n_A            4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNR   41 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999 68999999999999999999999864

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=91.64  E-value=0.1  Score=43.77  Aligned_cols=35  Identities=23%  Similarity=0.249  Sum_probs=32.4

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|.| .|.||+.+++.++..|++|++.+++.
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~  197 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ  197 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            589999999 79999999999999999999999864

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=91.63  E-value=0.16  Score=40.60  Aligned_cols=39  Identities=31%  Similarity=0.420  Sum_probs=34.3

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   45 (264)
T 3ucx_A            6 GGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTV   45 (264)
T ss_dssp             -CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCH
Confidence            3468999999999 57899999999999999999999864

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=91.61  E-value=0.11  Score=41.98  Aligned_cols=40  Identities=25%  Similarity=0.278  Sum_probs=35.0

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ....+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        22 m~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (270)
T 3ftp_A           22 MDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTE   62 (270)
T ss_dssp             -CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34578999999998 58899999999999999999999864

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=91.58  E-value=0.12  Score=40.85  Aligned_cols=40  Identities=33%  Similarity=0.418  Sum_probs=35.7

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...++.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         8 ~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   48 (249)
T 3f9i_A            8 HMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNE   48 (249)
T ss_dssp             -CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence            45678999999999 68999999999999999999999864

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=91.58  E-value=0.17  Score=42.32  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=29.6

Q ss_pred             CeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ++|+|||.|.+|..+|..+..-|. +|..+|...
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            589999999999999999987777 899999764

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=91.58  E-value=0.12  Score=43.23  Aligned_cols=38  Identities=26%  Similarity=0.373  Sum_probs=33.9

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccC-CC-EEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPF-GV-KIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~f-g~-~V~~~~~~~  186 (210)
                      ..+.+++|.|.| .|.||+.+++.|... |. +|++++|..
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~   57 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDE   57 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCH
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECCh
Confidence            457899999999 799999999999988 98 999999864

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=91.58  E-value=0.13  Score=41.70  Aligned_cols=37  Identities=27%  Similarity=0.305  Sum_probs=33.8

Q ss_pred             ccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.|-   |.||+++|+.|..-|++|+..+|+.
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   57 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATP   57 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence            488999999997   6999999999999999999998865

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.56  E-value=0.083  Score=43.72  Aligned_cols=35  Identities=17%  Similarity=0.307  Sum_probs=32.4

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|.| .|.||+.+++.++..|++|++.+++.
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~  175 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA  175 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            589999999 79999999999999999999998864

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=91.55  E-value=0.17  Score=40.71  Aligned_cols=38  Identities=37%  Similarity=0.404  Sum_probs=34.1

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..++.
T Consensus         8 ~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (278)
T 3sx2_A            8 EGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLC   46 (278)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecc
Confidence            3568999999999 5789999999999999999999886

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=91.55  E-value=0.2  Score=44.76  Aligned_cols=39  Identities=21%  Similarity=0.268  Sum_probs=36.1

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .++.+|+|+|||-|.+|-++|..+...+.+|..+.|++.
T Consensus       181 ~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          181 VDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             cccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            567899999999999999999999999999999998764

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=91.54  E-value=0.12  Score=40.97  Aligned_cols=37  Identities=27%  Similarity=0.374  Sum_probs=33.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~   40 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999998 68999999999999999999999864

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=91.53  E-value=0.17  Score=40.65  Aligned_cols=37  Identities=27%  Similarity=0.391  Sum_probs=33.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~   40 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   40 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999998 68999999999999999999999874

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=91.53  E-value=0.064  Score=48.07  Aligned_cols=43  Identities=21%  Similarity=0.231  Sum_probs=37.2

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      |.......|.+.+|.|||+|.+|.++|+-|...|. ++..+|..
T Consensus        22 ~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D   65 (531)
T 1tt5_A           22 WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN   65 (531)
T ss_dssp             HHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCC
T ss_pred             cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            54444577999999999999999999999999998 78899875

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=91.51  E-value=0.13  Score=41.02  Aligned_cols=38  Identities=24%  Similarity=0.438  Sum_probs=34.2

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   48 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQ   48 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            457899999998 78999999999999999999999864

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=91.51  E-value=0.12  Score=41.49  Aligned_cols=40  Identities=38%  Similarity=0.525  Sum_probs=34.9

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..-.+.||++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus        23 ~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   63 (271)
T 4iin_A           23 NAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSN   63 (271)
T ss_dssp             -CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            34568999999999 68999999999999999999999853

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=91.48  E-value=0.17  Score=41.31  Aligned_cols=40  Identities=30%  Similarity=0.376  Sum_probs=34.5

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +...|.||++.|-| -+.||+++|+.|..-|++|+..+|+.
T Consensus        23 Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~   63 (273)
T 4fgs_A           23 MTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRK   63 (273)
T ss_dssp             --CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44569999999999 45699999999999999999999864

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=91.48  E-value=0.22  Score=43.57  Aligned_cols=36  Identities=22%  Similarity=0.377  Sum_probs=33.6

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCC---EEEEEc
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV---KIIATK  183 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~---~V~~~~  183 (210)
                      +..+.++++.|+|.|..|+.+++.|...|+   +|+.+|
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            457899999999999999999999999998   799999

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.48  E-value=0.17  Score=41.36  Aligned_cols=38  Identities=34%  Similarity=0.368  Sum_probs=33.9

Q ss_pred             cccccCeEEEEec-Ch--HHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~--IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.|- |.  ||+++|+.|..-|++|+..+|+.
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~   67 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGD   67 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999997 45  99999999999999999998873

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=91.48  E-value=0.17  Score=40.85  Aligned_cols=37  Identities=24%  Similarity=0.409  Sum_probs=33.8

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~   63 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDA   63 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999 68999999999999999999999864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=91.47  E-value=0.18  Score=42.19  Aligned_cols=36  Identities=17%  Similarity=0.183  Sum_probs=30.8

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ...++|+|||.|.+|..+|..+..-|. +|..+|...
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            456799999999999999999886666 999999865

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=91.47  E-value=0.16  Score=41.15  Aligned_cols=38  Identities=16%  Similarity=0.166  Sum_probs=34.6

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   61 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNE   61 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            568999999999 68999999999999999999999864

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=91.46  E-value=0.13  Score=40.69  Aligned_cols=37  Identities=30%  Similarity=0.304  Sum_probs=33.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (246)
T 2ag5_A            3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (246)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999999 58999999999999999999999864

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=91.44  E-value=0.15  Score=41.72  Aligned_cols=37  Identities=27%  Similarity=0.360  Sum_probs=33.3

Q ss_pred             cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ..+.+++|.|.|. |-||+.+++.|..-|.+|++++|+
T Consensus         7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   44 (342)
T 1y1p_A            7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3577899999996 999999999999999999999885

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=91.44  E-value=0.17  Score=41.76  Aligned_cols=38  Identities=21%  Similarity=0.254  Sum_probs=31.5

Q ss_pred             cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.+++|.|.|. |.||+.+++.|..-|.+|++.+|..
T Consensus        23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (343)
T 2b69_A           23 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   61 (343)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4578899999995 9999999999998999999999854

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=91.44  E-value=0.16  Score=40.93  Aligned_cols=37  Identities=27%  Similarity=0.451  Sum_probs=33.9

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   56 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   56 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58899999998 78999999999999999999999864

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=91.43  E-value=0.14  Score=40.52  Aligned_cols=38  Identities=24%  Similarity=0.411  Sum_probs=33.4

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCE-EEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVK-IIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~-V~~~~~~~~  187 (210)
                      ++.||++.|.| .|.||+++|+.|..-|++ |+..+|+..
T Consensus         2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~   41 (254)
T 1sby_A            2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN   41 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCch
Confidence            36899999998 789999999999999996 999988753

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=91.41  E-value=0.14  Score=39.76  Aligned_cols=38  Identities=26%  Similarity=0.260  Sum_probs=32.9

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|.+|+..+|+..
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~   41 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG   41 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc
Confidence            46789999999 588999999999999999999998754

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=91.40  E-value=0.1  Score=41.95  Aligned_cols=38  Identities=26%  Similarity=0.334  Sum_probs=34.3

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~   69 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHP   69 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            47899999998 789999999999999999999998754

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=91.40  E-value=0.13  Score=42.72  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=29.2

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCC--EEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~--~V~~~~~~~  186 (210)
                      -++|+|||.|.+|..+|..++.-|.  +|..+|+..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            4699999999999999999885554  899999864

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=91.39  E-value=0.19  Score=41.34  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=32.5

Q ss_pred             ccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.||++.|.|-   |.||+++|+.|..-|++|+..+|+
T Consensus         6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~   44 (315)
T 2o2s_A            6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWP   44 (315)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECH
T ss_pred             cCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecc
Confidence            478999999995   899999999999999999998753

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=91.39  E-value=0.17  Score=40.63  Aligned_cols=37  Identities=24%  Similarity=0.458  Sum_probs=33.9

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   55 (273)
T 1ae1_A           18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   55 (273)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58899999999 68999999999999999999999864

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=91.39  E-value=0.2  Score=42.04  Aligned_cols=39  Identities=26%  Similarity=0.451  Sum_probs=34.8

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCC-CEEEEEcCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg-~~V~~~~~~~~  187 (210)
                      ..+.+++|.|.| .|.||+.+++.|..-| .+|++++|+..
T Consensus        28 ~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (377)
T 2q1s_A           28 SKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLS   68 (377)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTT
T ss_pred             HHhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCC
Confidence            357889999999 5999999999999999 99999998754

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=91.38  E-value=0.41  Score=44.59  Aligned_cols=33  Identities=24%  Similarity=0.479  Sum_probs=31.5

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|||||.|-+|..+|..+..-|++|+.+|.++
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            699999999999999999999999999999875

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=91.35  E-value=0.11  Score=43.63  Aligned_cols=35  Identities=34%  Similarity=0.480  Sum_probs=32.3

Q ss_pred             ccCeEEEE-ecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFIL-GFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIi-G~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|+ |.|.||..+++.++..|++|++.+++.
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~  202 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGST  202 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            58899999 689999999999999999999999764

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=91.35  E-value=0.17  Score=40.42  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=33.7

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.| .|.||+++|+.|..-|.+|+..+|+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   41 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999 78999999999999999999999864

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=91.33  E-value=0.091  Score=43.73  Aligned_cols=34  Identities=15%  Similarity=0.067  Sum_probs=28.3

Q ss_pred             cCeEEEEecChHHHHHHHHhccC-CCEEE-EEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~f-g~~V~-~~~~~~  186 (210)
                      ..+|||||+|.||+..++.++.. +++|. ++|++.
T Consensus         5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~   40 (330)
T 3e9m_A            5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRL   40 (330)
T ss_dssp             CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSS
T ss_pred             eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCH
Confidence            46899999999999999999875 77877 567764

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=91.32  E-value=0.15  Score=42.82  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=30.3

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC--EEEEEcCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRS  185 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~--~V~~~~~~  185 (210)
                      -.+++|+|+|.|.||+.+|..+..-|.  +|..+|..
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            356799999999999999999886666  89999985

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=91.31  E-value=0.17  Score=41.13  Aligned_cols=39  Identities=23%  Similarity=0.417  Sum_probs=34.9

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.++++.|.| .|.||+++|+.|..-|.+|+..+|+.
T Consensus        13 ~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~   52 (303)
T 1yxm_A           13 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   52 (303)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3468899999998 78999999999999999999999863

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=91.31  E-value=0.21  Score=39.28  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=29.2

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.| .|.||+++|+.|.. |.+|+..+|+.
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~   38 (245)
T 3e9n_A            2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNP   38 (245)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCH
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            36799999999 58899999999988 99999999864

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=91.27  E-value=0.18  Score=40.52  Aligned_cols=38  Identities=18%  Similarity=0.346  Sum_probs=34.3

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         5 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   43 (270)
T 1yde_A            5 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   43 (270)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            458899999998 68999999999999999999999864

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=91.25  E-value=0.084  Score=47.07  Aligned_cols=37  Identities=32%  Similarity=0.557  Sum_probs=29.3

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|+|.|.+|+++|..|...|++|+.++|+.
T Consensus       361 ~l~~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~  397 (523)
T 2o7s_A          361 PLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTY  397 (523)
T ss_dssp             -----CEEEECCSHHHHHHHHHHHHHCC-CEEEESSH
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4789999999999999999999999999999999873

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=91.25  E-value=0.14  Score=45.33  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=31.4

Q ss_pred             cCeEEEEecChHHHH-HHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~-vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++|.|||.|.+|.. +|+.|+..|.+|.++|...
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   56 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   56 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence            589999999999996 8999999999999999764

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=91.22  E-value=0.17  Score=38.96  Aligned_cols=34  Identities=26%  Similarity=0.268  Sum_probs=30.9

Q ss_pred             CeEEEEe-cChHHHHHHHHhc-cCCCEEEEEcCCCC
Q 028302          154 KTVFILG-FGNIGVELAKRLR-PFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG-~G~IG~~vA~~~~-~fg~~V~~~~~~~~  187 (210)
                      |++.|.| .|.||+++++.|. .-|.+|++++|+..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~   41 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK   41 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc
Confidence            6799999 7999999999999 89999999998754

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=91.22  E-value=0.16  Score=42.17  Aligned_cols=38  Identities=24%  Similarity=0.273  Sum_probs=33.8

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++.+++|.|.|. |-||+.+++.|..-|.+|++++|...
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   62 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFAT   62 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            467899999996 99999999999988999999998653

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=91.21  E-value=0.18  Score=42.41  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=28.6

Q ss_pred             cccCeEEEEecChHHHHHHHHhc-c-CCCEEE-EEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLR-P-FGVKII-ATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~-~-fg~~V~-~~~~~~  186 (210)
                      ....+|||||+|.||+..++.++ . -+++|. .+|+.+
T Consensus        21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~   59 (357)
T 3ec7_A           21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVA   59 (357)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSST
T ss_pred             CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCH
Confidence            34468999999999999999887 4 478877 578765

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=91.20  E-value=0.21  Score=40.35  Aligned_cols=39  Identities=23%  Similarity=0.238  Sum_probs=35.0

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      +|.||++.|-| .+.||+++|++|..-|++|+..+|+...
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~   43 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPD   43 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCccc
Confidence            68999999999 5679999999999999999999987653

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=91.18  E-value=0.18  Score=40.76  Aligned_cols=38  Identities=26%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++.||++.|.| .|.||+++|+.|..-|++|+..+|..
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   65 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD   65 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH
Confidence            568999999999 67899999999999999999998653

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=91.18  E-value=0.21  Score=40.43  Aligned_cols=40  Identities=20%  Similarity=0.217  Sum_probs=34.7

Q ss_pred             CcccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          146 PTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       146 ~~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .....+.+|++.|.| .|.||+++|+.|..-|++|+..+++
T Consensus        22 ~mm~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   62 (280)
T 4da9_A           22 SMMTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIG   62 (280)
T ss_dssp             -CCSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hhhhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            345678999999999 5889999999999999999999864

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=91.16  E-value=0.14  Score=40.67  Aligned_cols=38  Identities=34%  Similarity=0.411  Sum_probs=34.2

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   43 (248)
T 3op4_A            5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSE   43 (248)
T ss_dssp             TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            358899999999 57899999999999999999999864

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=91.16  E-value=0.2  Score=41.76  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=29.6

Q ss_pred             ccCeEEEEecChHHHHHHHHhcc-CCC-EEEEEcCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRS  185 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~-fg~-~V~~~~~~  185 (210)
                      ..++++|||.|.+|+..++.+.. ++. +|..|||+
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~  155 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY  155 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc
Confidence            46899999999999999998874 455 79999998

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=91.16  E-value=0.11  Score=42.14  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=30.7

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   67 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRP   67 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468999999999 68899999999999999999999874

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=91.14  E-value=0.13  Score=41.25  Aligned_cols=38  Identities=26%  Similarity=0.356  Sum_probs=34.7

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   44 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRST   44 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999998 68999999999999999999999864

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=91.13  E-value=0.11  Score=42.95  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=30.5

Q ss_pred             eEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       155 tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +|.|+|. |.||...++.++.+|++|++.+++..
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~  185 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA  185 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            7999997 99999999999999999999998754

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=91.11  E-value=0.13  Score=42.67  Aligned_cols=35  Identities=6%  Similarity=0.119  Sum_probs=27.5

Q ss_pred             cCeEEEEecChHHHHHHHHhccC-CCEEE-EEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~f-g~~V~-~~~~~~~  187 (210)
                      ..+|||||+|.||+..++.++.. +++|. .+|+++.
T Consensus         5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~   41 (329)
T 3evn_A            5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLE   41 (329)
T ss_dssp             CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSS
T ss_pred             ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHH
Confidence            46899999999999999988754 56766 5677643

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=91.09  E-value=0.19  Score=41.64  Aligned_cols=38  Identities=24%  Similarity=0.470  Sum_probs=34.5

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~   42 (319)
T 3ioy_A            4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQ   42 (319)
T ss_dssp             CCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCH
Confidence            467899999999 58999999999999999999999875

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=91.06  E-value=0.13  Score=43.67  Aligned_cols=38  Identities=32%  Similarity=0.482  Sum_probs=34.5

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ...|++++|.|||.|.+|..+|+.|...|. ++..+|+.
T Consensus       113 q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D  151 (353)
T 3h5n_A          113 QDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDND  151 (353)
T ss_dssp             HHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             HHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            567999999999999999999999999998 78888874

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=91.03  E-value=0.19  Score=39.51  Aligned_cols=35  Identities=17%  Similarity=0.202  Sum_probs=31.4

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~   37 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRY   37 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            578999999 58899999999999999999999875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=91.02  E-value=0.13  Score=42.87  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             ccCeEEEEecC-hHHHHHHHHhccC-CCEEEEEcCCC
Q 028302          152 LGKTVFILGFG-NIGVELAKRLRPF-GVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G-~IG~~vA~~~~~f-g~~V~~~~~~~  186 (210)
                      .|++|.|+|.| .||+.+++.++.+ |++|++++++.
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~  206 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE  206 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            57899999999 9999999999998 99999999764

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=91.02  E-value=0.2  Score=41.77  Aligned_cols=35  Identities=17%  Similarity=0.086  Sum_probs=29.5

Q ss_pred             ccCeEEEEecChHHHHHHHHhcc-CC-CEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~-fg-~~V~~~~~~~  186 (210)
                      ..++++|||.|.+|+..++.+.. ++ -+|..|||++
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~  160 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVRE  160 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSH
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCH
Confidence            56799999999999999998875 44 4799999874

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=91.01  E-value=0.19  Score=40.15  Aligned_cols=37  Identities=24%  Similarity=0.321  Sum_probs=33.3

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|.+|+..+|+.
T Consensus         4 m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (267)
T 2gdz_A            4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   41 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCH
Confidence            36789999999 68999999999999999999999864

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=91.01  E-value=0.34  Score=40.86  Aligned_cols=37  Identities=32%  Similarity=0.527  Sum_probs=33.0

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ..++|+|+|-|.+|+.+++.++.+|.+|+.+|..+..
T Consensus        10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~~   46 (391)
T 1kjq_A           10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (391)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCC
Confidence            4589999999999999999999999999999876543

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=91.00  E-value=0.13  Score=40.74  Aligned_cols=36  Identities=31%  Similarity=0.431  Sum_probs=33.1

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      ..+.++++.|.| .|.||+++|+.|..-|++|+..+|
T Consensus         3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r   39 (261)
T 1gee_A            3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYR   39 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcC
Confidence            457899999998 799999999999999999999998

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=90.98  E-value=0.16  Score=40.36  Aligned_cols=37  Identities=24%  Similarity=0.244  Sum_probs=33.2

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSK   41 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999999 58999999999999999999999874

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=90.95  E-value=0.16  Score=45.51  Aligned_cols=39  Identities=21%  Similarity=0.288  Sum_probs=36.0

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .++.+|+|+|||-|.+|-++|..+...+.+|..+.|++.
T Consensus       187 ~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          187 VDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            467899999999999999999999999999999998764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=90.93  E-value=0.17  Score=42.44  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=29.3

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCC--EEEEEcCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRS  185 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~--~V~~~~~~  185 (210)
                      .++|+|||.|.+|..+|..+...|.  +|..+|..
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            5689999999999999999987666  89999975

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.92  E-value=0.2  Score=40.41  Aligned_cols=37  Identities=35%  Similarity=0.428  Sum_probs=33.9

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|.
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~   48 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDIC   48 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecc
Confidence            468999999999 6789999999999999999999884

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=90.92  E-value=0.1  Score=41.21  Aligned_cols=35  Identities=26%  Similarity=0.277  Sum_probs=27.9

Q ss_pred             cCeEEEEecChHHHHHHHH--hccCCCEEE-EEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKR--LRPFGVKII-ATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~--~~~fg~~V~-~~~~~~~  187 (210)
                      .++++|+|.|++|+++++.  ....|+++. ++|..+.
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~  121 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSN  121 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTS
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCch
Confidence            4689999999999999998  346789876 4666544

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=90.91  E-value=0.13  Score=41.71  Aligned_cols=38  Identities=26%  Similarity=0.430  Sum_probs=33.4

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~   63 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDG   63 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999998 67899999999999999999999864

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=90.89  E-value=0.066  Score=48.99  Aligned_cols=43  Identities=33%  Similarity=0.414  Sum_probs=36.5

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      |.......|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus         7 ~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D   50 (640)
T 1y8q_B            7 LPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLD   50 (640)
T ss_dssp             CCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            44445577999999999999999999999998887 78888864

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=90.89  E-value=0.16  Score=40.46  Aligned_cols=37  Identities=24%  Similarity=0.344  Sum_probs=33.2

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   39 (260)
T 2qq5_A            2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHL   39 (260)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46789999998 78999999999999999999998864

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=90.88  E-value=0.13  Score=42.05  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=35.5

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        36 m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   76 (293)
T 3rih_A           36 MFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPR   76 (293)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3578999999999 578999999999999999999998753

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=90.86  E-value=0.14  Score=41.58  Aligned_cols=38  Identities=29%  Similarity=0.351  Sum_probs=34.1

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   42 (280)
T 3tox_A            4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNG   42 (280)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            358899999999 57899999999999999999999874

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=90.85  E-value=0.27  Score=39.33  Aligned_cols=38  Identities=24%  Similarity=0.285  Sum_probs=34.0

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++.||++.|.| .|.||+++|+.|..-|++|+..++..
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   45 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQA   45 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCG
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCc
Confidence            468999999999 58999999999999999999987753

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=90.81  E-value=0.14  Score=40.93  Aligned_cols=38  Identities=18%  Similarity=0.232  Sum_probs=34.6

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   46 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKS   46 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999999 68899999999999999999999864

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=90.79  E-value=0.13  Score=42.58  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=30.5

Q ss_pred             eEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       155 tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +|.|+|. |.||...++.++.+|++|++.+++..
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~  186 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE  186 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            8999997 99999999999999999999998743

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=90.79  E-value=0.14  Score=41.07  Aligned_cols=38  Identities=29%  Similarity=0.405  Sum_probs=34.3

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~   44 (267)
T 3t4x_A            6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRRE   44 (267)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468899999999 58899999999999999999999864

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=90.73  E-value=0.18  Score=40.56  Aligned_cols=39  Identities=28%  Similarity=0.390  Sum_probs=32.3

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        11 ~~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   50 (266)
T 3p19_A           11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRV   50 (266)
T ss_dssp             ----CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3467899999999 58899999999999999999999864

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=90.71  E-value=0.19  Score=39.30  Aligned_cols=35  Identities=29%  Similarity=0.480  Sum_probs=31.3

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEE-cCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIAT-KRS  185 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~-~~~  185 (210)
                      +.++++.|.| .|.||+++|+.|..-|++|+.. +|+
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~   39 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPA   39 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcC
Confidence            6789999998 6899999999999999999998 454

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=90.70  E-value=0.1  Score=43.01  Aligned_cols=33  Identities=12%  Similarity=0.306  Sum_probs=27.3

Q ss_pred             CeEEEEecChHHHHHHHHhccC-CCEEE-EEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~f-g~~V~-~~~~~~  186 (210)
                      .+|||||+|++|+..++.++.. ++++. .+|+++
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~   45 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNP   45 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCH
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCH
Confidence            5899999999999999998865 67755 777753

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=90.67  E-value=0.14  Score=42.81  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=31.1

Q ss_pred             CeEEEEec-ChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          154 KTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~-G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ++|.|.|. |.||+.+++.++..|+ +|++.+++.
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~  196 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTH  196 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence            89999998 9999999999999999 999998864

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=90.67  E-value=0.15  Score=40.91  Aligned_cols=38  Identities=26%  Similarity=0.460  Sum_probs=34.5

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   54 (266)
T 4egf_A           16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDV   54 (266)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999999 68899999999999999999999864

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=90.65  E-value=0.12  Score=42.82  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|.| .|.||+.+++.++.+|++|++.+++.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~  180 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE  180 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            578999999 59999999999999999999999864

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=90.65  E-value=0.15  Score=39.95  Aligned_cols=37  Identities=32%  Similarity=0.447  Sum_probs=33.4

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.++++.|.| .|.||+++++.|..-|.+|+..+|+.
T Consensus         4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~   41 (248)
T 2pnf_A            4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSG   41 (248)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence            47899999998 78999999999999999999999864

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=90.65  E-value=0.14  Score=40.77  Aligned_cols=39  Identities=31%  Similarity=0.421  Sum_probs=34.6

Q ss_pred             cccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .++.||++.|.|-+   .||+++|+.|..-|++|+..+++..
T Consensus        16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~   57 (267)
T 3gdg_A           16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRA   57 (267)
T ss_dssp             HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSS
T ss_pred             cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcc
Confidence            46899999999965   8999999999999999999987654

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=90.60  E-value=0.25  Score=40.49  Aligned_cols=34  Identities=15%  Similarity=0.166  Sum_probs=27.8

Q ss_pred             cCeEEEEecChHHHH-HHHHhcc-CCCEEE-EEcCCC
Q 028302          153 GKTVFILGFGNIGVE-LAKRLRP-FGVKII-ATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~-vA~~~~~-fg~~V~-~~~~~~  186 (210)
                      ..+|||||+|++|+. .++.++. -++++. .+|+++
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~   42 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNK   42 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCH
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCH
Confidence            468999999999996 8887775 578887 578764

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=90.60  E-value=0.14  Score=41.38  Aligned_cols=38  Identities=24%  Similarity=0.324  Sum_probs=34.5

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~   60 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDP   60 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            568999999999 58899999999999999999999864

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=90.56  E-value=0.17  Score=40.29  Aligned_cols=37  Identities=30%  Similarity=0.391  Sum_probs=33.1

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   39 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA   39 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcc
Confidence            5789999998 689999999999999999999998754

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=90.51  E-value=0.16  Score=40.41  Aligned_cols=37  Identities=30%  Similarity=0.435  Sum_probs=33.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        11 ~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~   48 (266)
T 1xq1_A           11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   48 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999998 78999999999999999999999864

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=90.49  E-value=0.23  Score=40.18  Aligned_cols=37  Identities=27%  Similarity=0.470  Sum_probs=33.4

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .++.+|++.|.| .|.||+++|+.|..-|++|+..+|+
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~   58 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFG   58 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            568899999999 6889999999999999999999984

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=90.47  E-value=0.2  Score=39.06  Aligned_cols=37  Identities=30%  Similarity=0.325  Sum_probs=32.4

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCC--CEEEEEcCCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFG--VKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg--~~V~~~~~~~~  187 (210)
                      +.++++.|.| .|.||+++++.|...|  .+|+..+|+..
T Consensus         1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~   40 (250)
T 1yo6_A            1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVE   40 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGG
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHH
Confidence            3578999998 7899999999999999  99999998643

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=90.46  E-value=0.14  Score=41.32  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=34.0

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +|+||++.|-| .+.||+++|++|..-|++|+..|++.
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~   43 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRA   43 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999999998 57799999999999999999999864

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=90.43  E-value=0.18  Score=44.53  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=31.3

Q ss_pred             cCeEEEEecChHHHH-HHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~-vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++|.|||+|.+|.. +|+.|+..|.+|.++|...
T Consensus        19 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   53 (491)
T 2f00_A           19 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   53 (491)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCC
Confidence            468999999999997 9999999999999999865

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=90.36  E-value=0.2  Score=39.85  Aligned_cols=37  Identities=24%  Similarity=0.232  Sum_probs=33.3

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhcc---CCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRP---FGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~---fg~~V~~~~~~~  186 (210)
                      ++.+|++.|.| .|.||+++|+.|..   -|++|+..+|+.
T Consensus         3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~   43 (259)
T 1oaa_A            3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCH
Confidence            57899999998 68999999999998   899999999864

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=90.34  E-value=0.18  Score=40.69  Aligned_cols=36  Identities=33%  Similarity=0.532  Sum_probs=32.5

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   38 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQ   38 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5689999999 57899999999999999999999874

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=90.32  E-value=0.19  Score=44.92  Aligned_cols=35  Identities=31%  Similarity=0.429  Sum_probs=0.0

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      +++.|+|+|.+|+.+|+.|...|.+|+..|+.+..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=90.30  E-value=0.19  Score=41.85  Aligned_cols=36  Identities=25%  Similarity=0.346  Sum_probs=32.4

Q ss_pred             cccCeEEEEecChHHHHHHHHhccC-CCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~f-g~~V~~~~~~~  186 (210)
                      -.|.+|.|+|.|.+|...++.++.+ +.+|++.+++.
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~  206 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDD  206 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence            3588999999999999999999988 78999998764

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=90.29  E-value=0.23  Score=41.86  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=27.6

Q ss_pred             cCeEEEEecChHHHH-HHHHhccC-CCEEE-EEcCCC
Q 028302          153 GKTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~-vA~~~~~f-g~~V~-~~~~~~  186 (210)
                      ..+|||||+|.||+. .++.++.. +++|. .+|+++
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~   41 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDL   41 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSH
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCH
Confidence            468999999999995 88888766 78877 667754

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=90.27  E-value=0.21  Score=41.47  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=27.3

Q ss_pred             cCeEEEEecChHHHHHHHHhc-c-CCCEEE-EEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLR-P-FGVKII-ATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~-~-fg~~V~-~~~~~~  186 (210)
                      ..+|||||+|.||+..++.++ . -+++|+ .+|+++
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~   44 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDS   44 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCH
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCH
Confidence            358999999999999999887 4 478865 567753

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=90.27  E-value=0.15  Score=42.89  Aligned_cols=37  Identities=16%  Similarity=0.204  Sum_probs=28.3

Q ss_pred             ccccCeEEEEecChHHH-HHHHHhccC-CCEEE-EEcCCC
Q 028302          150 TLLGKTVFILGFGNIGV-ELAKRLRPF-GVKII-ATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~-~vA~~~~~f-g~~V~-~~~~~~  186 (210)
                      .....+|||||+|.||+ ..++.++.. +++|. .+|+++
T Consensus        24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~   63 (350)
T 3rc1_A           24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRW   63 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSH
T ss_pred             CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCH
Confidence            34457899999999999 788888766 88876 567764

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=90.26  E-value=0.24  Score=40.75  Aligned_cols=36  Identities=31%  Similarity=0.539  Sum_probs=32.4

Q ss_pred             ccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.||++.|.|-   |.||+++|+.|..-|++|+..+|+
T Consensus         6 ~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~   44 (319)
T 2ptg_A            6 DLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWP   44 (319)
T ss_dssp             CCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEecc
Confidence            478999999995   899999999999999999998753

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=90.24  E-value=0.26  Score=39.67  Aligned_cols=37  Identities=32%  Similarity=0.406  Sum_probs=33.8

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..++.
T Consensus         7 ~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~   44 (277)
T 3tsc_A            7 GKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIA   44 (277)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEecc
Confidence            468999999999 5789999999999999999999884

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=90.19  E-value=0.21  Score=40.62  Aligned_cols=35  Identities=34%  Similarity=0.513  Sum_probs=31.8

Q ss_pred             ccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcC
Q 028302          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       150 ~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      .+.||++.|.|-   |.||+++|+.|..-|++|+..+|
T Consensus         5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r   42 (297)
T 1d7o_A            5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeec
Confidence            478999999997   69999999999999999999874

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=90.19  E-value=0.18  Score=40.84  Aligned_cols=38  Identities=24%  Similarity=0.365  Sum_probs=31.6

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         8 ~~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~   46 (311)
T 3o26_A            8 TVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDV   46 (311)
T ss_dssp             ----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            457899999999 58999999999999999999999874

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=90.19  E-value=0.16  Score=40.34  Aligned_cols=37  Identities=27%  Similarity=0.342  Sum_probs=33.4

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ..+.++++.|.| .|.||+++++.|..-|++|+..+|+
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~   54 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   54 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            458899999999 6899999999999999999999883

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=90.16  E-value=0.22  Score=40.26  Aligned_cols=36  Identities=28%  Similarity=0.308  Sum_probs=31.7

Q ss_pred             cCeEEEEec-ChHHHHHHHHhccCC-CEEEEEcCCCCC
Q 028302          153 GKTVFILGF-GNIGVELAKRLRPFG-VKIIATKRSWAS  188 (210)
Q Consensus       153 ~~tvGIiG~-G~IG~~vA~~~~~fg-~~V~~~~~~~~~  188 (210)
                      .++|.|.|. |.||+.+++.|..-| .+|++.+|++..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~   42 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRK   42 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCC
Confidence            578999996 999999999999888 999999987643

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=90.15  E-value=0.48  Score=37.96  Aligned_cols=38  Identities=21%  Similarity=0.409  Sum_probs=33.9

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ++||++.|-| -+.||+++|++|..-|++|+..|++...
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~   47 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADG   47 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            5899999999 5679999999999999999999987543

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=90.14  E-value=0.17  Score=40.76  Aligned_cols=37  Identities=32%  Similarity=0.310  Sum_probs=33.4

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   40 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47889999998 78999999999999999999999864

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=90.14  E-value=0.29  Score=40.17  Aligned_cols=37  Identities=24%  Similarity=0.337  Sum_probs=32.6

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      .+++|.|.| .|-||+.+++.|..-|.+|++.+|....
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   41 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNS   41 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence            467999999 7999999999999999999999986543

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=90.14  E-value=0.24  Score=40.91  Aligned_cols=38  Identities=34%  Similarity=0.388  Sum_probs=34.3

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..|+..
T Consensus        42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~   80 (317)
T 3oec_A           42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCR   80 (317)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEeccc
Confidence            568999999998 68999999999999999999998763

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=90.11  E-value=0.22  Score=41.97  Aligned_cols=34  Identities=12%  Similarity=0.162  Sum_probs=28.4

Q ss_pred             cCeEEEEecChHHHHHHHHhccC-CCEEEE-EcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~f-g~~V~~-~~~~~  186 (210)
                      ..+|||||+|.||+..++.++.. +++|.+ +|+++
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~   40 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILA   40 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSH
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCH
Confidence            46899999999999999999877 788875 57653

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=90.07  E-value=0.14  Score=42.52  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=30.2

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+++.|+|+|.+|+.+|+.|...|. |..+|+.+.
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~  148 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV  148 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGG
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChh
Confidence            5689999999999999999999999 999998653

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=90.03  E-value=0.2  Score=39.81  Aligned_cols=38  Identities=16%  Similarity=0.261  Sum_probs=30.5

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -++++|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   43 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRG   43 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCch
Confidence            468899999999 58999999999999999999999854

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=90.02  E-value=0.22  Score=42.01  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=31.1

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      -.|++|.|+| .|.||+.+++.++.+|++|++.++
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~  216 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS  216 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC
Confidence            3589999999 799999999999999999998874

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=89.96  E-value=0.23  Score=35.59  Aligned_cols=34  Identities=35%  Similarity=0.436  Sum_probs=27.7

Q ss_pred             ccCeEEEEecChHHHHHHHHhcc-CCCEEEEE-cCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRP-FGVKIIAT-KRS  185 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~-fg~~V~~~-~~~  185 (210)
                      ..+++.|+|.|..|+.+++.++. -|++|.++ |..
T Consensus         3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~   38 (141)
T 3nkl_A            3 AKKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDD   38 (141)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECC
Confidence            45789999999999999999974 38898865 443

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=89.96  E-value=0.25  Score=40.23  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=33.9

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..++.
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            468999999999 6899999999999999999999876

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=89.93  E-value=0.25  Score=39.87  Aligned_cols=38  Identities=24%  Similarity=0.386  Sum_probs=30.7

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .-+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   58 (279)
T 3sju_A           20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDA   58 (279)
T ss_dssp             -----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            457899999999 68899999999999999999999864

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=89.90  E-value=0.21  Score=41.32  Aligned_cols=36  Identities=22%  Similarity=0.040  Sum_probs=30.9

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...++|.|.|. |.||+.+++.|..-|.+|++.+|..
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            44679999996 9999999999998899999999976

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=89.83  E-value=0.26  Score=41.61  Aligned_cols=30  Identities=23%  Similarity=0.318  Sum_probs=25.4

Q ss_pred             CeEEEEe-cChHHHHHHHHhccC-CCEEEEEc
Q 028302          154 KTVFILG-FGNIGVELAKRLRPF-GVKIIATK  183 (210)
Q Consensus       154 ~tvGIiG-~G~IG~~vA~~~~~f-g~~V~~~~  183 (210)
                      .+|||+| +|.||+.+++.|... +++|.++.
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~   40 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALA   40 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEE
Confidence            5899999 999999999999865 46887764

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=89.82  E-value=0.19  Score=40.29  Aligned_cols=37  Identities=27%  Similarity=0.251  Sum_probs=33.2

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   40 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47789999998 68999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	3e-13
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	5e-10
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	1e-08
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	2e-07
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	4e-07
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	6e-07
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	7e-07
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	9e-07
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	3e-04
d1hwxa1	293	c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (	3e-04
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	5e-04
d1c1da1	201	c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R	0.001

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 61.9 bits (150), Expect = 3e-13
 Identities = 18/135 (13%), Positives = 44/135 (32%), Gaps = 15/135 (11%)

Query: 13  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYH----LCVVKTMRLDS 68
           T++            + KE+   +  ++V+       P+ +A       + V + +   +
Sbjct: 1   TKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIA 59

Query: 69  NCISRANQMKLIM--QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 126
             +       +       VG++ +D+  A   G ++  +P        S     +  M+ 
Sbjct: 60  ETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPV------YSYTTHAVRNMVV 113

Query: 127 LLRKQNEMRMAIEQK 141
                N     +E K
Sbjct: 114 KAFDNN--LELVEGK 126

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 53.1 bits (127), Expect = 5e-10
 Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 32/134 (23%)

Query: 46  ISDVPDVIANYHL---CVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKV 102
           +     ++    L         R+ +  +++  ++K I     GL+ +   +     + V
Sbjct: 17  LRKYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTV 75

Query: 103 ARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG 162
           A   G    N      +   +++  +R                          +     G
Sbjct: 76  AGNAG---SNGYGNERVWRQMVMEAVR-------------------------NLITYATG 107

Query: 163 NIGVELAKRLRPFG 176
                +AKR    G
Sbjct: 108 GRPRNIAKREDYIG 121

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 1e-08
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             +  T+ L    + +   +++I++ G G + +DI +A   GI V  +P      +    
Sbjct: 47  ALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVP----AASVYSE 102

Query: 118 ELTIYLMLGLLRK 130
           + +I +     R+
Sbjct: 103 QASIEMREEAARE 115

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 15/75 (20%), Positives = 25/75 (33%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L  +               +K I  + +G + +D++A    GIKV   P   T      A
Sbjct: 49  LITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMA 108

Query: 118 ELTIYLMLGLLRKQN 132
                L+  L    +
Sbjct: 109 HQANDLIDALFGGAD 123

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 45.1 bits (106), Expect = 4e-07
 Identities = 10/113 (8%), Positives = 36/113 (31%), Gaps = 9/113 (7%)

Query: 33  LQNYPSIQVDVVPISDVPDV---IANYH-LCVVKTMRLDSNCISRANQMKLI--MQFGVG 86
                   ++        +       +  +  ++T    +    + +   +       VG
Sbjct: 19  WAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG 78

Query: 87  LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIE 139
            + +D+ A  + GI+++ +P        +   +  + +  L+    +   + E
Sbjct: 79  TDNIDMTAMKQYGIRLSNVPA---YTETAVHNMVYFSLQHLVDFLTKGETSTE 128

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 44.7 bits (105), Expect = 6e-07
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 9   DKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPIS----DVPDVIANYHLCVVKTM 64
           +K+  + L         H    E L+      ++    +     + + I + H   +++ 
Sbjct: 1   EKDKIKFLLVEG----VHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSR 56

Query: 65  RL-DSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
                + I+ A ++  I  F +G   VD++AA + GI V   P   T       E     
Sbjct: 57  THLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQ---EAQENIGLE 113

Query: 124 MLGLLRKQ--NEMRM 136
           + G L K   N   +
Sbjct: 114 VAGKLIKYSDNGSTL 128

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 45.3 bits (107), Expect = 7e-07
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 46  ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI 105
           + D   VI+           L    I++A  +KL +  G+G + VD+ +A    + VA +
Sbjct: 87  LVDADVVISQPFWPAY----LTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV 142

Query: 106 PGDVTGNAASCAELTIYLML 125
                 N+ +      Y   
Sbjct: 143 TY---CNSTTLTAQARYAAG 159

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.4 bits (104), Expect = 9e-07
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 39  IQVDVVPISDVPDVIA---NYHLCVVKTMRLDSNCI-SRANQMKLIMQFGVGLEGVDINA 94
           ++V  V   D   ++A        +V++       + + A ++K++ + GVGL+ VD++A
Sbjct: 23  VEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDA 82

Query: 95  ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK 142
           AT  G+ V   P      + + A+      +    +       +    
Sbjct: 83  ATARGVLVVNAPTS---ASTAEAQDRAGTDVAESVRLALAGEFVPDAV 127

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQKK-----LGVPTGETLLGKTVFILGFGNIGVELA 169
           + AE+ + L+LG  R+  E    I  +           GE L  KT+ I GFG+IG  LA
Sbjct: 4   ATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALA 63

Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQ 195
           KR + F + I       AS S  +  
Sbjct: 64  KRAQGFDMDIDYFDTHRASSSDEASY 89

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 134 MRMAIEQKKLGVPTG--ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
           +   IE        G       KT  + GFGN+G+   + L  FG K +A 
Sbjct: 15  IENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAV 65

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186
           T   + GK   + G+G++G   A+ LR FG ++I T+   
Sbjct: 18  TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           M+  +  + LG     +L G TV + G G +G  LA      G +++
Sbjct: 13  MKATVAHRGLG-----SLDGLTVLVQGLGAVGGSLASLAAEAGAQLL 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.92
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.92
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.92
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.91
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.91
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.91
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.91
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.9
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.89
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.88
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.87
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.85
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.83
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.81
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.81
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.79
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	98.84
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.15
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.94
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.89
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.88
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.87
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.77
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.77
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.76
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.71
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.68
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.62
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.43
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.26
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.26
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.11
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.05
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.03
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	96.99
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.97
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.93
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	96.83
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	96.8
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.8
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.79
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.79
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.78
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.77
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.76
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.67
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.6
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	96.58
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.51
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.4
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.36
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.31
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.27
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.26
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.22
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.19
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.14
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.1
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	96.06
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.9
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.9
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.87
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.82
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.75
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.72
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.68
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.63
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.6
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.59
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.49
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.41
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.39
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.3
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.27
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.25
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.22
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.16
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.15
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.14
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.11
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.1
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.06
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.05
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.99
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.99
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.95
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.94
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.91
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.9
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.86
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.72
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.7
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.68
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	94.68
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.66
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	94.64
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.64
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.61
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.61
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.6
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	94.47
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.46
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	94.43
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	94.41
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.4
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	94.39
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.36
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.33
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.3
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.3
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.28
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.24
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.22
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.13
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.11
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	94.09
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.09
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.05
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.04
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.98
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.97
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.92
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.9
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.88
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.88
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.88
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.86
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	93.78
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.73
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.73
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	93.64
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	93.56
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	93.41
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	93.34
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	93.34
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.33
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.32
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.29
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.29
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.26
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.22
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.22
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.13
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.08
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	93.01
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.0
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	92.98
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.95
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.94
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.93
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.85
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.83
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	92.81
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.79
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.79
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	92.78
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.72
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	92.7
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.69
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.67
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	92.6
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	92.6
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.6
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	92.57
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.4
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	92.33
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.31
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.3
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	92.23
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	92.21
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.21
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.18
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	92.17
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.17
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.09
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	92.08
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.06
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	91.98
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	91.84
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.78
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.72
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	91.56
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	91.54
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.54
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.54
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	91.54
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	91.5
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	91.41
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	91.3
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	91.26
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.24
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	90.98
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	90.86
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.74
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.51
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	90.5
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.48
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.48
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.15
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	90.06
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	90.06
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	90.01
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	89.96
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	89.85
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.67
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.63
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	89.59
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	89.56
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	89.51
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.35
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.21
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.16
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	88.98
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.54
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.47
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	87.65
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	87.64
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.63
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.62
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	87.38
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	87.28
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	87.27
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	87.22
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	87.13
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	87.13
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	86.71
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	86.54
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	86.5
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	86.35
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	86.31
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	86.27
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.24
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	86.22
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	86.17
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	86.07
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	85.93
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	85.62
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	84.57
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	84.4
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	84.37
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	84.32
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	84.26
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	84.25
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	84.14
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	83.73
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	83.45
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.18
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	83.07
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	82.93
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	82.63
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	82.42
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	82.42
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	81.8
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	81.58
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	81.22
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	80.9
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	80.23
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	80.2
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	80.1
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	80.1

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.92  E-value=2.7e-28  Score=178.00  Aligned_cols=121  Identities=17%  Similarity=0.213  Sum_probs=97.6

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCccch
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDI   92 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~   92 (210)
                      |||+++.+..++   . ++.++...  ++..      ...++++|+++.  ++++++.++++|+||||++.++|+||+|.
T Consensus         1 Mki~v~~~lp~e---~-~e~L~~~~--~v~~------~~d~~~~d~~l~--~~~~~~~l~~~~~Lk~i~~~~aG~D~i~~   66 (121)
T d1qp8a2           1 MELYVNFELPPE---A-EEELRKYF--KIVR------GGDLGNVEAALV--SRITAEELAKMPRLKFIQVVTAGLDHLPW   66 (121)
T ss_dssp             CEEECCSCCCHH---H-HHHHHTTC--EEEC------SSCCTTBCCCCB--SCCCHHHHHHCTTCCCEEBSSSCCTTSCC
T ss_pred             CEEEEeCCCCHH---H-HHHhhhcc--eEee------cccccccceeee--eccCHHHHhcCCCceEEEecccCcCCCCH
Confidence            688888775432   2 33333322  2221      123567787775  67999999999999999999999999999


Q ss_pred             hHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHh
Q 028302           93 NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL  172 (210)
Q Consensus        93 ~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~  172 (210)
                      +.+ +++|.|+|++|+   |+.+||||+++++|++.|                         +++|+|+|+|||++|+|+
T Consensus        67 ~~~-~~~i~v~n~~g~---~~~~vae~~~~~il~~~r-------------------------~l~i~G~G~iG~~iA~r~  117 (121)
T d1qp8a2          67 ESI-PPHVTVAGNAGS---NGYGNERVWRQMVMEAVR-------------------------NLITYATGGRPRNIAKRE  117 (121)
T ss_dssp             TTS-CTTSCEECCCSS---SSSSCHHHHHHHHHHHHH-------------------------HHHHHHTTSCCSCBCCGG
T ss_pred             HHh-ccCeEEEECCCC---ChHHHHHHHHHHHHHhcC-------------------------CEEEEcCCHHHHHHHHHH
Confidence            987 579999999999   999999999999999997                         368999999999999999


Q ss_pred             ccCC
Q 028302          173 RPFG  176 (210)
Q Consensus       173 ~~fg  176 (210)
                      ++||
T Consensus       118 ~a~G  121 (121)
T d1qp8a2         118 DYIG  121 (121)
T ss_dssp             GTC-
T ss_pred             HhcC
Confidence            9998

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=4.9e-26  Score=168.10  Aligned_cols=127  Identities=17%  Similarity=0.190  Sum_probs=105.1

Q ss_pred             CcceEEEeCCCCCCchhhHHHHhhcCCCeEEec-CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEccccCC
Q 028302           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE   88 (210)
Q Consensus        11 ~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~aG~d   88 (210)
                      +||||+++.+..+..   ++ .++...++.+.. .+.+++.+.++++|++++. ..+++++.++++|+||+|+..|+|+|
T Consensus         1 sMpkvli~~~~~~~~---~~-~L~~~~~v~~~~~~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d   76 (130)
T d1ygya2           1 SLPVVLIADKLAPST---VA-ALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLD   76 (130)
T ss_dssp             CCCEEEECSSCCGGG---GT-TSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCT
T ss_pred             CCCEEEEECCCCHHH---HH-HHhCCcEEEECCCCCHHHHHHHcCCCEEEEEcCcccchHHHHhhcccceEEeeeccccc
Confidence            589999998754432   22 333333444443 2446778889999988874 46799999999999999999999999


Q ss_pred             ccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCC
Q 028302           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG  144 (210)
Q Consensus        89 ~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~  144 (210)
                      +||++++.++||.|+|+||+   ++.+||||+++++|++.|++...++.++++.|.
T Consensus        77 ~IDl~~~~~~gI~V~n~p~~---~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~  129 (130)
T d1ygya2          77 NVDVDAATARGVLVVNAPTS---ASTAEAQDRAGTDVAESVRLALAGEFVPDAVNV  129 (130)
T ss_dssp             TBCHHHHHHTTCEEECCTTS---SCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred             chhHHHHHHCCceEEecCCC---CcHHHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence            99999999999999999999   889999999999999999999988888888774

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=2.3e-25  Score=173.68  Aligned_cols=98  Identities=24%  Similarity=0.338  Sum_probs=90.6

Q ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC--cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302          112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (210)
Q Consensus       112 ~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~  189 (210)
                      |+.+||||+++++|++.|++..+++.++++.|...  .+.++.|+|+||+|+|+||+++|+++++|||+|++|||+.++.
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~   80 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA   80 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh
Confidence            57899999999999999999999999999999753  6789999999999999999999999999999999999976532


Q ss_pred             --------------CcccCceeEEecCCCCCCCCC
Q 028302          190 --------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       190 --------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                                    .+..+|.++..||+|+ +|+|
T Consensus        81 ~~~~~~~~~~~l~ell~~sDiv~~~~Plt~-~T~~  114 (184)
T d1ygya1          81 RAAQLGIELLSLDDLLARADFISVHLPKTP-ETAG  114 (184)
T ss_dssp             HHHHHTCEECCHHHHHHHCSEEEECCCCST-TTTT
T ss_pred             HHhhcCceeccHHHHHhhCCEEEEcCCCCc-hhhh
Confidence                          5788999999999999 9997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.91  E-value=5.5e-25  Score=171.01  Aligned_cols=97  Identities=21%  Similarity=0.309  Sum_probs=89.4

Q ss_pred             chhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC-cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC--
Q 028302          113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--  189 (210)
Q Consensus       113 a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~--  189 (210)
                      |++||||+++++|++.|++..+++.++++.|... ....|.|+||||||+|+||+.+|+++++|||+|++|||++++.  
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~   80 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPW   80 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSS
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCcccCceEEEeccccccccceeeeeccccccccccccccccce
Confidence            5789999999999999999999999999999765 4457999999999999999999999999999999999987544  


Q ss_pred             --------CcccCceeEEecCCCCCCCCC
Q 028302          190 --------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       190 --------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                              .+..+|.+++.+|+|+ +|+|
T Consensus        81 ~~~~~l~ell~~sDiv~~~~pl~~-~t~~  108 (181)
T d1qp8a1          81 RFTNSLEEALREARAAVCALPLNK-HTRG  108 (181)
T ss_dssp             CCBSCSHHHHTTCSEEEECCCCST-TTTT
T ss_pred             eeeechhhhhhccchhhccccccc-cccc
Confidence                    5888999999999999 9997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.91  E-value=5.5e-25  Score=172.64  Aligned_cols=96  Identities=20%  Similarity=0.329  Sum_probs=88.0

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC---------CcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---------~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      ++|||++++++|++.|++...++.++++.|.+         ..+.+|+||||||||+|+||+++|+++++|||+|++|||
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            57999999999999999999999999999975         257899999999999999999999999999999999999


Q ss_pred             CCCCC---------------CcccCceeEEecCCCCCCCCC
Q 028302          185 SWASH---------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       185 ~~~~~---------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      +.+..               ++..+|.++..+|+|+ +|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~-~T~~  120 (193)
T d1mx3a1          81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNE-HNHH  120 (193)
T ss_dssp             TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCT-TCTT
T ss_pred             cccccchhhhccccccchhhccccCCEEEEeecccc-cchh
Confidence            76533               4678999999999999 9987

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.91  E-value=4.6e-25  Score=173.53  Aligned_cols=96  Identities=19%  Similarity=0.244  Sum_probs=87.3

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHhCCC--CCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC--
Q 028302          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKL--GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--  189 (210)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w--~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~--  189 (210)
                      ++||||+++++|+++|+++.+++.++++.|  ....+++|+|+||||||+|+||+.+|+++++|||+|++||++.++.  
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~   81 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE   81 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCcccccccc
Confidence            689999999999999999999999998865  4457799999999999999999999999999999999999876532  


Q ss_pred             -----------CcccCceeEEecCCCCCCCCC
Q 028302          190 -----------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       190 -----------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                                 .+.++|.+++.+|+|+ +|+|
T Consensus        82 ~~~~~~~~l~~~l~~sDii~~~~plt~-~T~~  112 (197)
T d1j4aa1          82 KKGYYVDSLDDLYKQADVISLHVPDVP-ANVH  112 (197)
T ss_dssp             HTTCBCSCHHHHHHHCSEEEECSCCCG-GGTT
T ss_pred             cceeeeccccccccccccccccCCccc-cccc
Confidence                       5778999999999999 9987

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.91  E-value=7.5e-25  Score=172.73  Aligned_cols=96  Identities=24%  Similarity=0.256  Sum_probs=88.4

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC---CcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC-
Q 028302          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-  189 (210)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~-  189 (210)
                      ++||||+++++|++.|++..+++.++++.|..   ..+++|.||||||||+|+||+.+|+++++|||+|++|||+.... 
T Consensus         3 ~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   82 (199)
T d1dxya1           3 AAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD   82 (199)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC
T ss_pred             hHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchhh
Confidence            68999999999999999999999999999963   35789999999999999999999999999999999999976533 


Q ss_pred             -----------CcccCceeEEecCCCCCCCCC
Q 028302          190 -----------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       190 -----------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                                 .+..+|.++..+|+|+ +|+|
T Consensus        83 ~~~~~~~~l~~l~~~~D~v~~~~plt~-~T~~  113 (199)
T d1dxya1          83 HPDFDYVSLEDLFKQSDVIDLHVPGIE-QNTH  113 (199)
T ss_dssp             CTTCEECCHHHHHHHCSEEEECCCCCG-GGTT
T ss_pred             hcchhHHHHHHHHHhcccceeeecccc-cccc
Confidence                       5688999999999999 9987

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3.6e-24  Score=167.39  Aligned_cols=98  Identities=22%  Similarity=0.174  Sum_probs=88.4

Q ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC--cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302          112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (210)
Q Consensus       112 ~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~  189 (210)
                      |+++||||+++++|++.|+++.+++.++++.|...  .+.+|.+++|||+|+|+||+.+|+++++|||+|++||++.+..
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   80 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP   80 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccccceEeeccccccch
Confidence            67999999999999999999999999999999854  5678999999999999999999999999999999999876533


Q ss_pred             ------------CcccCceeEEecCCCCCCCCC
Q 028302          190 ------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       190 ------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                                  .+..+|.+++.||+|+ +|+|
T Consensus        81 ~~~~~~~~~l~ell~~sDii~i~~plt~-~T~~  112 (188)
T d1sc6a1          81 LGNATQVQHLSDLLNMSDVVSLHVPENP-STKN  112 (188)
T ss_dssp             CTTCEECSCHHHHHHHCSEEEECCCSST-TTTT
T ss_pred             hhhhhhhhhHHHHHhhccceeecccCCc-chhh
Confidence                        5688999999999999 9987

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.89  E-value=9.6e-24  Score=165.26  Aligned_cols=96  Identities=32%  Similarity=0.359  Sum_probs=87.7

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC-----CcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      .+|||++++++|++.|++.+.++.++++.|..     ..+.+++|+|+||||+|+||+++|+++++|||+|++||++...
T Consensus         3 ~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   82 (191)
T d1gdha1           3 VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRAS   82 (191)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhccccccccccccc
Confidence            68999999999999999999999999999963     2568999999999999999999999999999999999986542


Q ss_pred             C----------------CcccCceeEEecCCCCCCCCC
Q 028302          189 H----------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       189 ~----------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                      .                .+..+|.++..+|+|+ +|+|
T Consensus        83 ~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~-~T~~  119 (191)
T d1gdha1          83 SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTP-ETRY  119 (191)
T ss_dssp             HHHHHHHTCEECSSHHHHHHHCSEEEECCCCCT-TTTT
T ss_pred             cchhhcccccccCCHHHHHhhCCeEEecCCCCc-hHhh
Confidence            1                5778999999999999 9987

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.88  E-value=4e-23  Score=161.39  Aligned_cols=95  Identities=25%  Similarity=0.330  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC----CcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC-
Q 028302          115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-  189 (210)
Q Consensus       115 ~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~-  189 (210)
                      +||||+++++|++.|++..+++.++++.|..    ..+.+|+|++|||+|+|+||+++|+++++|||+|++||++..+. 
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   81 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES   81 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeecccccc
Confidence            7999999999999999999999999999974    24678999999999999999999999999999999999875432 


Q ss_pred             ---------------CcccCceeEEecCCCCCCCCC
Q 028302          190 ---------------SQVSCQSSGMLGPLSDGETHH  210 (210)
Q Consensus       190 ---------------~~~~~~~~~~~~Plt~~~T~h  210 (210)
                                     .+..+|.++..+|+|+ +|+|
T Consensus        82 ~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~-~T~~  116 (188)
T d2naca1          82 VEKELNLTWHATREDMYPVCDVVTLNCPLHP-ETEH  116 (188)
T ss_dssp             HHHHHTCEECSSHHHHGGGCSEEEECSCCCT-TTTT
T ss_pred             ccccccccccCCHHHHHHhccchhhcccccc-cchh
Confidence                           5678999999999999 9997

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.87  E-value=7.8e-23  Score=150.86  Aligned_cols=120  Identities=11%  Similarity=0.244  Sum_probs=97.5

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCC-CeEEec-CCCCChhhhcCCceEEEE-cCCCCCHHHHhcCC--CceEEEEccccC
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYP-SIQVDV-VPISDVPDVIANYHLCVV-KTMRLDSNCISRAN--QMKLIMQFGVGL   87 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~-~v~~~~-~~~~~~~~~~~~adv~i~-~~~~~~~~~l~~~p--~Lk~i~~~~aG~   87 (210)
                      |||+++... ++..++++++.+.+. ++.+.. ...++..+.++++|++++ ...++++++++++|  +||+|+..|+|+
T Consensus         1 MKIl~~~~~-~~e~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG~   79 (131)
T d1dxya2           1 MKIIAYGAR-VDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGT   79 (131)
T ss_dssp             CEEEECSCC-TTTHHHHHHHHHHHCCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCC
T ss_pred             CEEEEEecC-cCcHHHHHHHHHHcCeEEEEcCCCCCHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEccccc
Confidence            789988654 444777777776542 233332 234677788899998776 45789999999865  899999999999


Q ss_pred             CccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHH
Q 028302           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM  136 (210)
Q Consensus        88 d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~  136 (210)
                      |+||++++.++||.|+|+|++   ++++||||+++++|++.|++.+.++
T Consensus        80 d~ID~~~a~~~gI~V~n~P~~---~~~aVAE~~~~~~l~l~R~l~~~~~  125 (131)
T d1dxya2          80 DNIDMTAMKQYGIRLSNVPAY---TETAVHNMVYFSLQHLVDFLTKGET  125 (131)
T ss_dssp             TTBCHHHHHHTTCEEECCTTS---SHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             ccccccccccceEEEEeCCCC---CchhHHHHHHHHHHHHHcchHHHHh
Confidence            999999999999999999999   7799999999999999999977543

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=4.5e-22  Score=146.79  Aligned_cols=117  Identities=20%  Similarity=0.244  Sum_probs=90.9

Q ss_pred             CCCcceEEEeCCCCCCchhhHHHHhhcC-CCeEEec--CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEcc
Q 028302            9 DKNITRVLFCGPHFPASHNYTKEYLQNY-PSIQVDV--VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFG   84 (210)
Q Consensus         9 ~~~~~~ili~~~~~~~~~~~~~~~~~~~-~~v~~~~--~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~   84 (210)
                      ++++|||+++.+.+++   .++.+.+.. ..+....  .+.+++.+.++++|++++. ...+++++++.+|+||+|+..|
T Consensus         1 ek~kmKILv~d~i~~~---a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~g   77 (132)
T d1sc6a2           1 EKDKIKFLLVEGVHQK---ALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFA   77 (132)
T ss_dssp             CCSSCCEEECSCCCHH---HHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECS
T ss_pred             CCCCCEEEEECCCCHH---HHHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecccccChhhhhccccceeEEEec
Confidence            3578999999886543   233333333 2343322  3456778889999998874 4679999999999999999999


Q ss_pred             ccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhH
Q 028302           85 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQ  131 (210)
Q Consensus        85 aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~  131 (210)
                      +|+|+||++++.++||+|+|+|++   ++.+|||++++++++..|++
T Consensus        78 vG~D~IDl~aa~~~gI~V~ntp~~---~~~svAe~~~lml~~~~~~~  121 (132)
T d1sc6a2          78 IGTNQVDLDAAAKRGIPVFNAPFS---STQEAQENIGLEVAGKLIKY  121 (132)
T ss_dssp             SCCTTBCHHHHHHTTCCEECCTTT---CSHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCHHHHHhCCCEEEECCCC---chhHHHHHHHHHHHHHhhHH
Confidence            999999999999999999999999   78999998776665444443

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.83  E-value=7.2e-21  Score=140.69  Aligned_cols=114  Identities=13%  Similarity=0.196  Sum_probs=96.5

Q ss_pred             ceEEEeCCCCCCchhhHHHHhhcCCCeEEecCC---CCChhhhcCCceEEEE-cCCCCCHHHHhcCC--CceEEEEcccc
Q 028302           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVV-KTMRLDSNCISRAN--QMKLIMQFGVG   86 (210)
Q Consensus        13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~adv~i~-~~~~~~~~~l~~~p--~Lk~i~~~~aG   86 (210)
                      .||++++.. ++..++++++.+..+++++...+   .+++.+.++++|++++ ...++++++++++|  +||+|+..|+|
T Consensus         1 ~KI~~f~~~-~~e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG   79 (134)
T d1j4aa2           1 TKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVG   79 (134)
T ss_dssp             CEEEECSCC-GGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CeEEEEecc-cccHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCC
Confidence            378888654 55688899999988888887544   3567788899998887 56789999999764  79999999999


Q ss_pred             CCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHH
Q 028302           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE  133 (210)
Q Consensus        87 ~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~  133 (210)
                      +||||++++.++||.|+|+|++      ++|||++++||++.|++..
T Consensus        80 ~d~ID~~aa~~~gI~V~N~P~~------svae~a~~~ml~l~r~~~~  120 (134)
T d1j4aa2          80 VDNIDMAKAKELGFQITNVPVY------SYTTHAVRNMVVKAFDNNL  120 (134)
T ss_dssp             CTTBCHHHHHHTTCEEECCCCS------CCBHHHHHHHHHHHHHHHH
T ss_pred             cCccCHHHHHhCCeEEEECCCC------cHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999986      3789999999999998754

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.81  E-value=5.2e-21  Score=140.58  Aligned_cols=111  Identities=14%  Similarity=0.214  Sum_probs=85.7

Q ss_pred             cceEEEeCCCCCCchhhHHHHhhcCCCeEEecC----CCCChhhhcCCceEEEE-cCCCCCHHHHhcCC-CceEEEEccc
Q 028302           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVV-KTMRLDSNCISRAN-QMKLIMQFGV   85 (210)
Q Consensus        12 ~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~adv~i~-~~~~~~~~~l~~~p-~Lk~i~~~~a   85 (210)
                      +|||+++.+..+   ..++.+.+.+ ++.+...    +.+++.+.++++|++++ ...+++++.++++| +||+|+..|+
T Consensus         1 K~kVlit~~~~~---~~~~~l~~~~-~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gv   76 (129)
T d1gdha2           1 KKKILITWPLPE---AAMARARESY-DVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSI   76 (129)
T ss_dssp             CCEEEESSCCCH---HHHHHHHTTS-EEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESS
T ss_pred             CCEEEEeCCCCH---HHHHHHHcCC-cEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeeccc
Confidence            579999977533   3334444444 4444322    34567788899998776 56789999999997 8999999999


Q ss_pred             cCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHh
Q 028302           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR  129 (210)
Q Consensus        86 G~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R  129 (210)
                      |+||||++++.++||+|+|+||+   ++.+|||+++.+++.+.+
T Consensus        77 G~d~ID~~~a~~~gI~V~ntpg~---~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          77 GFDHIDLDACKARGIKVGNAPHG---ATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---BHHHHHHHHHHHHHHHHH
T ss_pred             CCccccHHHHHhCCCEEEECCCC---CchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999   889999976654444443

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.81  E-value=5.1e-20  Score=135.60  Aligned_cols=119  Identities=14%  Similarity=0.239  Sum_probs=90.5

Q ss_pred             cceEEEeCCCCCCchhhHHHHhhcCCCeEEec-CCCCChh-hhcCCceEEEE-cCCCCCHHHHhcCCCceEEEEccccCC
Q 028302           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVP-DVIANYHLCVV-KTMRLDSNCISRANQMKLIMQFGVGLE   88 (210)
Q Consensus        12 ~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~adv~i~-~~~~~~~~~l~~~p~Lk~i~~~~aG~d   88 (210)
                      +|+|++.....-   ......++...++.+.. .+.+++. +.+.++|.+++ ...+++++.++++|+||+|+..|+|+|
T Consensus         1 mP~v~~ld~~d~---~~e~~~L~~~~~v~~~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d   77 (133)
T d1mx3a2           1 MPLVALLDGRDC---TVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFD   77 (133)
T ss_dssp             CCEEEESSCSCC---TTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCT
T ss_pred             CCEEEEecCCcc---hhhHHHhcccceEEEecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCcc
Confidence            467777764321   22244566666665532 2334444 34556775555 567899999999999999999999999


Q ss_pred             ccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHH
Q 028302           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA  137 (210)
Q Consensus        89 ~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~  137 (210)
                      +||++++.++||.|+|+||+   ++ ++|||+++++|++.|++++..+.
T Consensus        78 ~iD~~~~~~~gI~v~n~p~~---~~-~vAE~a~~lil~~~R~i~~a~~g  122 (133)
T d1mx3a2          78 NIDIKSAGDLGIAVCNVPAA---SV-YSEQASIEMREEAAREIRRAITG  122 (133)
T ss_dssp             TBCHHHHHHTTCEEECCCST---TH-CCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cEeeeeheeCCEEEEcCCCC---Cc-hhHHHHHHHHHHHHhhHHHHHhc
Confidence            99999999999999999998   55 47999999999999999876443

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.79  E-value=2.1e-20  Score=143.16  Aligned_cols=111  Identities=18%  Similarity=0.245  Sum_probs=91.2

Q ss_pred             HHHHhhcCCCeEEe-cC----CCCChhhhcCCceEEEEc---CCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCc
Q 028302           29 TKEYLQNYPSIQVD-VV----PISDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGI  100 (210)
Q Consensus        29 ~~~~~~~~~~v~~~-~~----~~~~~~~~~~~adv~i~~---~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi  100 (210)
                      ++++++.. +.++. ..    +.+++.+.+.+||++++.   ...+++|.++++||||+|+..++|+||||++++.++||
T Consensus        59 lr~~Le~~-GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI  137 (186)
T d2naca2          59 LRKYLESN-GHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNV  137 (186)
T ss_dssp             CHHHHHHT-TCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTC
T ss_pred             HHHHHHHC-CCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCC
Confidence            36666554 23332 22    234567789999999985   35799999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCCchhHHHHH--------HHHHHHHHhhHHHHHHHHHhCCC
Q 028302          101 KVARIPGDVTGNAASCAELT--------IYLMLGLLRKQNEMRMAIEQKKL  143 (210)
Q Consensus       101 ~v~~~~~~~~~~a~~vAE~~--------l~~~L~~~R~~~~~~~~~~~~~w  143 (210)
                      .|+|++|+   |+.+||||+        ++++++..|++...+..+++|+|
T Consensus       138 ~V~n~pg~---n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         138 TVAEVTYC---NSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             EEEECTTT---THCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             EEEECCCc---CcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            99999999   999999999        77888888888777766777766

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.2e-10  Score=85.79  Aligned_cols=40  Identities=30%  Similarity=0.554  Sum_probs=37.6

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ...|.||+++|+|||.||+.+|+++++|||+|++|++.|-
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~   58 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPI   58 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccc
Confidence            5679999999999999999999999999999999999863

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=6.8e-07  Score=60.18  Aligned_cols=40  Identities=23%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~  189 (210)
                      +++||+|.|+|+|..|+.+|+.|...|++|+++|.+..+.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~   41 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCT
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCch
Confidence            5899999999999999999999999999999999876544

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.94  E-value=2.2e-06  Score=63.41  Aligned_cols=39  Identities=26%  Similarity=0.454  Sum_probs=36.5

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .--+.||++.|+|||.+|+-+|+++|++|++|+.++..|
T Consensus        18 ~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            456999999999999999999999999999999998876

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.89  E-value=5.6e-06  Score=61.00  Aligned_cols=49  Identities=24%  Similarity=0.290  Sum_probs=39.7

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC-----------------CCCcccCceeEEecC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA-----------------SHSQVSCQSSGMLGP  202 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~-----------------~~~~~~~~~~~~~~P  202 (210)
                      .+|||||+|.+|..+|+.++.-|.+|.+|||+..                 .+....+|.++..+|
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp   66 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTP   66 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCc
Confidence            3799999999999999999999999999999742                 124566777666666

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.88  E-value=1.8e-06  Score=63.78  Aligned_cols=51  Identities=22%  Similarity=0.307  Sum_probs=41.1

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC----------------CCcccCceeEEecCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS----------------HSQVSCQSSGMLGPLS  204 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~----------------~~~~~~~~~~~~~Plt  204 (210)
                      .+|||||+|.+|+.+|+.|..-|.+|++|||+++.                +....+|.++..+|-.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~   67 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNS   67 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCH
Confidence            37999999999999999999999999999998642                1455666676666643

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.87  E-value=3.8e-06  Score=58.34  Aligned_cols=41  Identities=17%  Similarity=0.302  Sum_probs=37.4

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~  189 (210)
                      -+|+||+|+|||.|.+|.+-|+.|..+|++|+++++...++
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~   48 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQ   48 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHH
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChH
Confidence            47999999999999999999999999999999999876543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.77  E-value=8.2e-06  Score=59.27  Aligned_cols=52  Identities=21%  Similarity=0.194  Sum_probs=40.4

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCCC---CcccCceeEEecC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH---SQVSCQSSGMLGP  202 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~~---~~~~~~~~~~~~P  202 (210)
                      ..-++|+||| +|.+|+.+|+.|+.-|.+|.+||+.....   ....++.+....|
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~v~~~~~   62 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVP   62 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECSC
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchhhhhccccccccc
Confidence            4457999999 99999999999999999999999976543   3344444444444

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.77  E-value=4.2e-06  Score=61.78  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=31.6

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++||+||+|.+|..+|++|..-|.+|.+|||+.+
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            5799999999999999999999999999999753

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=1.8e-05  Score=51.29  Aligned_cols=45  Identities=24%  Similarity=0.262  Sum_probs=37.1

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCCCcccCceeE
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSG  198 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~~~~~~~~~~  198 (210)
                      |||||+|-|-.|+-++.-++.+|.+++.+|+.........+++++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~pa~~~a~dvI   46 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVI   46 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGGGSCGGGSEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCcccccccceE
Confidence            799999999999999999999999999999987654333344333

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.71  E-value=1.3e-05  Score=61.41  Aligned_cols=37  Identities=27%  Similarity=0.437  Sum_probs=35.0

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +|.|+||+|-|||++|+.+|+.|..+|++|+++|...
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~   60 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDT   60 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchH
Confidence            6999999999999999999999999999999999753

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.68  E-value=1e-05  Score=58.89  Aligned_cols=50  Identities=26%  Similarity=0.365  Sum_probs=39.9

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC----------------CcccCceeEEecCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGMLGPL  203 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------------~~~~~~~~~~~~Pl  203 (210)
                      .+|||||+|++|+.+|+.|..-|.+|.+|++...+.                ....+|.++..+|-
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~   66 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTP   66 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCG
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecC
Confidence            379999999999999999999999999999865432                34556666666664

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.62  E-value=1.6e-05  Score=59.28  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=32.0

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .++|||||+|++|..+|++|..-|.+|++|||++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            4689999999999999999999999999999986

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.43  E-value=4.9e-05  Score=55.85  Aligned_cols=33  Identities=36%  Similarity=0.447  Sum_probs=29.2

Q ss_pred             CeEEEEecChHHHHHHHHhccCC--CEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg--~~V~~~~~~~  186 (210)
                      |+|+|||+|.||..+|+.++..|  .+|++||++.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            57999999999999999998655  5899999975

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00027  Score=48.62  Aligned_cols=40  Identities=30%  Similarity=0.458  Sum_probs=35.5

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~  189 (210)
                      ...+.||||+|-|.+|+-+|.-++.+|++++++|+++...
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P   47 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP   47 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence            3456789999999999999999999999999999987643

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.26  E-value=0.00031  Score=54.92  Aligned_cols=38  Identities=39%  Similarity=0.458  Sum_probs=34.7

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      +.+|.|+||.|-|||++|+.+|+.|...|++|++++.+
T Consensus        26 ~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          26 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecc
Confidence            34799999999999999999999999999999987753

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.11  E-value=0.00049  Score=53.38  Aligned_cols=39  Identities=31%  Similarity=0.506  Sum_probs=36.1

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+|.|+||.|-|||++|+.+|+.|...|++|++.|...
T Consensus        34 ~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~   72 (230)
T d1leha1          34 SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNK   72 (230)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccH
Confidence            467999999999999999999999999999999998753

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.05  E-value=0.00011  Score=51.80  Aligned_cols=33  Identities=24%  Similarity=0.481  Sum_probs=30.9

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |++.|+|+|++|+.+|+.|...|.+|+.+|..+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            678999999999999999999999999999864

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.03  E-value=0.00034  Score=50.45  Aligned_cols=33  Identities=30%  Similarity=0.425  Sum_probs=28.1

Q ss_pred             CeEEEEecChHHHHHHHHhccCC-CEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~  186 (210)
                      .+||+||+|++|+++++.+..-| .+|..|||+.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            37999999999999999765444 7999999975

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00028  Score=53.14  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=31.8

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|.+|+.+|..+...|.+|+.||+++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            799999999999999999999999999999976

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.93  E-value=0.00045  Score=49.90  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=30.3

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+|||||+|++|+++++.+..-|-+|..|+|+.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            379999999999999999998899999999874

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.83  E-value=0.0012  Score=52.84  Aligned_cols=63  Identities=21%  Similarity=0.309  Sum_probs=44.8

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      ++++-=++..+-.++++.......        ....+|.|+||.|=|||++|+.+|+.|...|++|++++.
T Consensus         5 eATG~GV~~~~~~~l~~~~~~~~~--------gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1           5 SATGRGVFHGIENFIENASYMSIL--------GMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHH--------TCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             hHhHHHHHHHHHHHHHhcccchhc--------cCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            445544555555555543221111        123579999999999999999999999999999998874

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.80  E-value=0.0017  Score=50.56  Aligned_cols=37  Identities=49%  Similarity=0.764  Sum_probs=32.7

Q ss_pred             cccccCeEEEEecChHHHHHHHHhc-cCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~-~fg~~V~~~~~~  185 (210)
                      .+|.|+||.|-|||++|+.+|+.|. .+|++|++.+.+
T Consensus        28 ~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          28 DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             SCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeecccc
Confidence            4599999999999999999999884 799999987643

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00058  Score=49.22  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=32.1

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      .+|+|+|.|.||..+|..|..-|.+|..++|....
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            47999999999999999999999999999997653

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.79  E-value=0.00028  Score=51.13  Aligned_cols=31  Identities=23%  Similarity=0.404  Sum_probs=25.9

Q ss_pred             eEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +||+||+|++|..+|++|..-|..++ |+|+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~~-~~~~~   32 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTLV-WNRTF   32 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEEE-ECSST
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEEE-EeCCH
Confidence            69999999999999999988777665 55543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.79  E-value=0.00043  Score=50.59  Aligned_cols=38  Identities=34%  Similarity=0.620  Sum_probs=35.0

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ..++++++.|||.|.+|+.+++.|...|+ +|..++|+.
T Consensus        20 ~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          20 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             SCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             CCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            36999999999999999999999999999 699999974

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.78  E-value=0.0003  Score=52.69  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=31.2

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ++|+|||.|.+|+.+|..+...|++|+.||+..
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            679999999999999999999999999999975

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.00046  Score=50.46  Aligned_cols=36  Identities=31%  Similarity=0.355  Sum_probs=33.7

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .|.+|.|+|.|.+|...++.+|.+|++|+++|++..
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            588999999999999999999999999999998764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.76  E-value=0.00043  Score=48.64  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=30.7

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+|.|+|+|++|+.+|+.|...|.+|+.+|..+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            378999999999999999999999999999865

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.00069  Score=48.61  Aligned_cols=41  Identities=22%  Similarity=0.415  Sum_probs=36.8

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ..+|.||++.|||-|.+|.+-|+.+..+|++|+.+++...+
T Consensus         8 ~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~~~   48 (150)
T d1kyqa1           8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHK   48 (150)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEECT
T ss_pred             heeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence            45799999999999999999999999999999999875443

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.60  E-value=0.0013  Score=51.60  Aligned_cols=37  Identities=41%  Similarity=0.660  Sum_probs=33.9

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~  184 (210)
                      +.+|.|+||.|=|||++|+.+|+.|...|++|++++.
T Consensus        31 ~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          31 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence            4679999999999999999999999999999997653

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.58  E-value=0.0014  Score=50.90  Aligned_cols=37  Identities=32%  Similarity=0.463  Sum_probs=33.4

Q ss_pred             ccccccCeEEEEecChHHHHHHHHh-ccCCCEEEEEcC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRL-RPFGVKIIATKR  184 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~-~~fg~~V~~~~~  184 (210)
                      +.++.|+||.|=|||++|+.+|+.| +.+|++|++++.
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeec
Confidence            4679999999999999999999998 589999998774

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.51  E-value=0.0005  Score=49.28  Aligned_cols=47  Identities=13%  Similarity=-0.025  Sum_probs=30.2

Q ss_pred             EEEEecChHHHHHHHHhccCCCEEEEEcCCCC----------------CCCcccCceeEEecC
Q 028302          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA----------------SHSQVSCQSSGMLGP  202 (210)
Q Consensus       156 vGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~----------------~~~~~~~~~~~~~~P  202 (210)
                      ||+||+|++|+.+|+.|+.-+--+..|+|+..                .+....+|.+++.+|
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~   64 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVP   64 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSC
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEecc
Confidence            79999999999999999873333457888752                224556666666665

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.40  E-value=0.0013  Score=47.85  Aligned_cols=36  Identities=33%  Similarity=0.553  Sum_probs=33.1

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -.|.+|.|+|.|.||...++.++.+|++|+++|++.
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            357799999999999999999999999999999875

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.36  E-value=0.002  Score=44.29  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=32.2

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -++|.|||-|-||-++|..++.+|.+|..+.+..+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            37999999999999999999999999999998653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.31  E-value=0.0015  Score=48.63  Aligned_cols=39  Identities=26%  Similarity=0.436  Sum_probs=36.9

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.+|+||++.|.| -|.||+++|+.+...|++|+..+|+.
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            6789999999999 79999999999999999999999975

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0013  Score=47.88  Aligned_cols=36  Identities=31%  Similarity=0.387  Sum_probs=33.2

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .|.+|.|+|.|.||...++.+|.+|++++..+++.+
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            588999999999999999999999999999988654

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.26  E-value=0.0033  Score=45.84  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=27.7

Q ss_pred             cCeEEEEecChHHHHHHHHhccC-CCEEEE-EcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~f-g~~V~~-~~~~~  186 (210)
                      ..+|||||+|.||+.+++.++.. ++++.+ +|++.
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~   38 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRA   38 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSS
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccc
Confidence            45799999999999999999976 778765 55554

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.22  E-value=0.0022  Score=44.32  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=31.7

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +++.|||.|-||-++|..+..+|++|..+.+..+
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            7999999999999999999999999999988654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.19  E-value=0.0019  Score=47.49  Aligned_cols=37  Identities=32%  Similarity=0.392  Sum_probs=33.4

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      -.|.+|.|+|.|.||...++.++.+|+ +|++.|++..
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccc
Confidence            358999999999999999999999998 7999998653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.14  E-value=0.0022  Score=46.41  Aligned_cols=35  Identities=26%  Similarity=0.343  Sum_probs=32.9

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|.+|.|+|.|.||...++.+|.+|++|++.|+++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            48899999999999999999999999999999875

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.10  E-value=0.0026  Score=43.41  Aligned_cols=34  Identities=29%  Similarity=0.524  Sum_probs=31.9

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +++.|||-|-||-++|..+..+|.+|..+.+..+
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            7999999999999999999999999999987654

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.06  E-value=0.0016  Score=48.06  Aligned_cols=38  Identities=34%  Similarity=0.479  Sum_probs=33.2

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .-|++|+|+|||||+-|++=|.-||--|++|+.=-|..
T Consensus        12 ~~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~g   49 (182)
T d1np3a2          12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (182)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             HHHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCC
Confidence            35789999999999999999999999999988765544

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.90  E-value=0.0025  Score=46.98  Aligned_cols=31  Identities=29%  Similarity=0.559  Sum_probs=25.8

Q ss_pred             CeEEEEecChHHHHHHHHhccC-CCEEEEEcC
Q 028302          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~f-g~~V~~~~~  184 (210)
                      ++|||-|||+|||.+.|.+... +++|.+.+.
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd   33 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSK   33 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEec
Confidence            5899999999999999987644 588887664

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0039  Score=42.54  Aligned_cols=34  Identities=32%  Similarity=0.360  Sum_probs=31.8

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +++.|||-|.||-++|..++.+|.+|..+.+..+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            7899999999999999999999999999998754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.004  Score=43.07  Aligned_cols=34  Identities=32%  Similarity=0.333  Sum_probs=31.9

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      |++.|||-|-||-++|..++.+|.+|..+.+..+
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            7999999999999999999999999999998653

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.82  E-value=0.0048  Score=42.11  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=33.7

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+++|.|||-|.||-++|..++.+|.+|..+.+.+.
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            4579999999999999999999999999999998653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.75  E-value=0.0032  Score=43.51  Aligned_cols=32  Identities=22%  Similarity=0.352  Sum_probs=29.9

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      +++.|||-|-||-++|..++.||.+|..+.+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            68999999999999999999999999998764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.0015  Score=50.50  Aligned_cols=38  Identities=26%  Similarity=0.446  Sum_probs=34.4

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      ...|++++|.|+|+|.+|..+|..|...|. ++..+|..
T Consensus        25 Q~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          25 QEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            356999999999999999999999999999 78888864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.68  E-value=0.005  Score=42.20  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.9

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+++.|||-|-||-++|..++.+|++|..+.+..+
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            38899999999999999999999999999987644

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.63  E-value=0.0031  Score=43.56  Aligned_cols=35  Identities=20%  Similarity=0.382  Sum_probs=32.3

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+++.|||-|-||-++|..++.+|++|..+.+...
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            37999999999999999999999999999988654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.60  E-value=0.0044  Score=43.01  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+++.|||-|-||-++|..++.+|.+|..+.+...
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            47999999999999999999999999999988653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.005  Score=44.67  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=32.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|.+|.|+|.|.||...+..++.+|+ +|++.|+..
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            46799999999999999999999999 799999864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0069  Score=44.08  Aligned_cols=39  Identities=15%  Similarity=0.212  Sum_probs=36.1

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +..+.||+|.|+|.|..+++++--|...|++|..++|+.
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            457889999999999999999999999999999999975

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.41  E-value=0.0053  Score=45.14  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=25.8

Q ss_pred             CeEEEEecChHHHHHHHHhcc-CCCEEEEEcC
Q 028302          154 KTVFILGFGNIGVELAKRLRP-FGVKIIATKR  184 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~-fg~~V~~~~~  184 (210)
                      .+|||.|||+|||.++|.+.. =+++|.+++.
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd   34 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITK   34 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEec
Confidence            589999999999999998763 4588877664

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0069  Score=46.47  Aligned_cols=39  Identities=21%  Similarity=0.283  Sum_probs=35.1

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++|+||++.|-| .+.||+++|++|..-|++|+..+|+..
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            479999999999 556999999999999999999998754

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.30  E-value=0.0071  Score=43.37  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=32.6

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|.+|.|.|.|.||...++.++.+|.+|++.+++.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            57899999999999999999999999999998764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.27  E-value=0.0066  Score=44.24  Aligned_cols=37  Identities=19%  Similarity=0.230  Sum_probs=33.2

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~~  187 (210)
                      -.+|+|.|||-|.+|-..|..|+..|++ |..+++...
T Consensus         2 ~~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           2 AYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            3689999999999999999999999995 999998754

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.25  E-value=0.01  Score=42.34  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=30.0

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCC--CEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg--~~V~~~~~~~  186 (210)
                      +.++|+|||.|++|..+|-.+...|  -+|..||+..
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4679999999999999999888655  5899999753

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.017  Score=42.53  Aligned_cols=46  Identities=15%  Similarity=0.179  Sum_probs=39.2

Q ss_pred             CCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      |..+..+...+|+|.|||-|-.|-+.|..|+..|.+|..|++.+..
T Consensus        33 ~~~~~~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          33 TKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             TTSCCCSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             cccccCCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            3333446778999999999999999999999999999999987654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0076  Score=46.59  Aligned_cols=38  Identities=24%  Similarity=0.321  Sum_probs=34.9

Q ss_pred             cccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+|+||++.|-|.++ ||+++|+.+..-|++|+.+||+.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999655 99999999999999999999975

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.15  E-value=0.011  Score=42.92  Aligned_cols=38  Identities=13%  Similarity=0.221  Sum_probs=32.5

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCC--EEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~--~V~~~~~~~  186 (210)
                      ..+...+|+|||.|++|..+|-.+...|.  ++..||...
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            45667899999999999999999886666  899999763

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.14  E-value=0.01  Score=40.79  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=33.4

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+++|.|||-|-||-++|..++.+|.+|..+++...
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            4578999999999999999999999999999987653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.11  E-value=0.0085  Score=43.10  Aligned_cols=35  Identities=17%  Similarity=0.116  Sum_probs=29.4

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      +.++|+|||.|++|+.+|-.+...+. ++..+|...
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            46899999999999999987775554 899999764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.10  E-value=0.0089  Score=43.68  Aligned_cols=36  Identities=22%  Similarity=0.407  Sum_probs=32.7

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      .|.+|.|+|.|.||...++.+|.+|+ +|++.|++.+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~   63 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI   63 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhh
Confidence            48899999999999999999999998 7999998753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.06  E-value=0.012  Score=40.35  Aligned_cols=35  Identities=31%  Similarity=0.391  Sum_probs=32.2

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++++.|||-|-||-++|..++.+|.+|..+.+.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            47899999999999999999999999999998654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.05  E-value=0.011  Score=40.53  Aligned_cols=35  Identities=31%  Similarity=0.417  Sum_probs=32.5

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++++.|||-|-+|-++|..++..|.+|..+++...
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            58999999999999999999999999999998654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.016  Score=41.93  Aligned_cols=37  Identities=16%  Similarity=0.288  Sum_probs=30.8

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCC--EEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~--~V~~~~~~~  186 (210)
                      .+...+|+|||.|++|..+|-.+...|.  ++..+|...
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3556789999999999999998885555  899999763

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.99  E-value=0.0097  Score=40.31  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=32.2

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+++.|||-|-+|-++|..++.+|.+|..+.+...
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            37999999999999999999999999999988654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.95  E-value=0.0089  Score=43.73  Aligned_cols=37  Identities=24%  Similarity=0.352  Sum_probs=32.6

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      -.|.+|.|+|.|.||...++.++.+|+ +|+..|++..
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            457899999999999999999999999 5778887654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.94  E-value=0.015  Score=41.33  Aligned_cols=37  Identities=22%  Similarity=0.254  Sum_probs=30.7

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCC--CEEEEEcCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg--~~V~~~~~~~  186 (210)
                      .-.+++|+|||.|++|+.+|-.+...+  -++..||...
T Consensus         3 ~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           3 NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            346789999999999999999887544  4899999754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.91  E-value=0.007  Score=43.99  Aligned_cols=52  Identities=12%  Similarity=0.148  Sum_probs=41.7

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCCC---------------CCcccCceeEEecCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS---------------HSQVSCQSSGMLGPL  203 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~~---------------~~~~~~~~~~~~~Pl  203 (210)
                      .+++|.|+|.|..|++++.-|+..|+ +|..++|+.+.               ....+.|.+++.-|+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCTTCCCSEEEECSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcccccchhhheecccc
Confidence            68999999999999999999999998 69999997531               134556777776564

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.90  E-value=0.012  Score=46.25  Aligned_cols=38  Identities=24%  Similarity=0.452  Sum_probs=35.8

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+|+||++.|-| .|.||+++|+.|..-|++|+..+|+.
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            589999999999 89999999999999999999999875

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.86  E-value=0.01  Score=41.99  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=27.7

Q ss_pred             CeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ++|+|||.|++|..+|-.+..-+. +++.+|...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            689999999999999987774444 899999765

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.72  E-value=0.019  Score=41.79  Aligned_cols=38  Identities=24%  Similarity=0.240  Sum_probs=34.4

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+++||+|.|+|.|..+++++-.|...| +|..++|+.
T Consensus        13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            34699999999999999999999999888 999999974

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.017  Score=42.29  Aligned_cols=40  Identities=25%  Similarity=0.303  Sum_probs=35.6

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      +.++++++|.|+|.|..|++++.-+...|+ ++..++|+..
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            457899999999999999999999999999 6888888754

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.013  Score=45.09  Aligned_cols=37  Identities=27%  Similarity=0.446  Sum_probs=34.1

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|+||++.|-| .+.||+++|++|..-|++|+..+|+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            58999999999 66799999999999999999999864

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=94.68  E-value=0.02  Score=43.51  Aligned_cols=36  Identities=19%  Similarity=0.413  Sum_probs=29.1

Q ss_pred             ccccc-CeEEEEecChHHHHHHHHhcc------CCCEEE-EEcC
Q 028302          149 ETLLG-KTVFILGFGNIGVELAKRLRP------FGVKII-ATKR  184 (210)
Q Consensus       149 ~~l~~-~tvGIiG~G~IG~~vA~~~~~------fg~~V~-~~~~  184 (210)
                      .-+.| |+|+|||||+-|.+=|.-||.      -|.+|+ +..+
T Consensus        39 ~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~   82 (226)
T d1qmga2          39 DAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRK   82 (226)
T ss_dssp             HHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECT
T ss_pred             HHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCC
Confidence            34678 999999999999999999997      567765 4443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.66  E-value=0.013  Score=45.51  Aligned_cols=37  Identities=24%  Similarity=0.458  Sum_probs=34.7

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +|+||++.|.| .+.||+++|+.+..-|++|+..+|+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999 77899999999999999999999975

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.018  Score=42.60  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=32.4

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..|+|.|+| .|.||+.+++.|..-|.+|.++.|++.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            468999999 899999999999989999999998654

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=94.64  E-value=0.0073  Score=44.28  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=28.1

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcC-CC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKR-SW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~-~~  186 (210)
                      .+|||=|||+|||.+.|.+-..+.+|.+.+. ..
T Consensus         1 ~kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~   34 (169)
T d1dssg1           1 SKIGINGFGRIGRLVLRAALEMGAQVVAVNDPFI   34 (169)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECTTS
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEECCCCc
Confidence            3799999999999999999877888888764 44

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.61  E-value=0.017  Score=42.78  Aligned_cols=38  Identities=24%  Similarity=0.381  Sum_probs=34.2

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.--+|.|||.|..|..-++.++++|++|..+|.+..
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            45567999999999999999999999999999997653

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.61  E-value=0.012  Score=45.41  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=32.9

Q ss_pred             ccccCeEEEEec-Ch--HHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~--IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -|+||++.|.|. |+  ||+++|+.|..-|++|+..++..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            389999999995 55  99999999999999999988754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.60  E-value=0.012  Score=42.92  Aligned_cols=38  Identities=21%  Similarity=0.421  Sum_probs=33.9

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      --.|.+|.|+|.|.+|...++.++.+|+ +|++.|++..
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            3468899999999999999999999995 8999998754

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.47  E-value=0.012  Score=46.07  Aligned_cols=37  Identities=32%  Similarity=0.453  Sum_probs=33.3

Q ss_pred             cccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      -+|+||++.|-|.+   .||+++|+.|...|++|+..++.
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            47999999999986   59999999999999999988764

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.46  E-value=0.012  Score=45.52  Aligned_cols=40  Identities=23%  Similarity=0.389  Sum_probs=35.2

Q ss_pred             cccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       149 ~~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      -+++||++.|-|-+ .||+++|+.|..-|++|+..+|+..+
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            36899999999954 59999999999999999999997653

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.43  E-value=0.015  Score=44.84  Aligned_cols=38  Identities=21%  Similarity=0.457  Sum_probs=33.8

Q ss_pred             cccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+|+||++.|-|.+   .||+++|++|..-|++|+..+++.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            46999999999975   499999999999999999888764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=94.41  E-value=0.019  Score=44.38  Aligned_cols=36  Identities=25%  Similarity=0.247  Sum_probs=32.9

Q ss_pred             cccCeEEEEec-C--hHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGF-G--NIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~-G--~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |+||++.|.|- |  .||.++|+.|..-|++|+..+|+.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            88999999996 4  499999999999999999999874

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.40  E-value=0.025  Score=37.67  Aligned_cols=40  Identities=20%  Similarity=0.301  Sum_probs=34.9

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ..+.+||+|.|||-|+-|..+|.-+....-++++..++..
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            4679999999999999999999999999998777766544

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=94.39  E-value=0.01  Score=43.25  Aligned_cols=38  Identities=21%  Similarity=0.213  Sum_probs=34.6

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+.+++|.|+|.|..+++++.-|..-+.+|..++|+.
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            46889999999999999999999888788999999975

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.36  E-value=0.015  Score=41.44  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=28.1

Q ss_pred             CeEEEEecChHHHHHHHHhccCC--CEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg--~~V~~~~~~~  186 (210)
                      |+|+|||.|++|..+|-.+...|  -++..||...
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            79999999999999999877544  4899999754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.33  E-value=0.012  Score=42.85  Aligned_cols=38  Identities=21%  Similarity=0.362  Sum_probs=33.6

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      --.|.+|.|+|.|.+|...++.++.+|+ +|++.|++.+
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            4568899999999999999999999997 7999988654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.30  E-value=0.01  Score=39.24  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=32.2

Q ss_pred             ccCeEEEEecChHH-HHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIG-VELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG-~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +.+++=+||.|.+| ..+|+.|+..|.+|.++|....
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            56899999999999 7779999999999999998643

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.30  E-value=0.019  Score=42.00  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=26.7

Q ss_pred             eEEEEecChHHHHHHHHhc---cCCCEEEEEcCCC
Q 028302          155 TVFILGFGNIGVELAKRLR---PFGVKIIATKRSW  186 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~---~fg~~V~~~~~~~  186 (210)
                      +|||=|||+|||.+.|.+-   ..+.+|.+.+...
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~   36 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLT   36 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSS
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCc
Confidence            7999999999999999875   4568988876543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.28  E-value=0.024  Score=39.43  Aligned_cols=36  Identities=17%  Similarity=0.250  Sum_probs=33.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .++++.|||-|-+|-++|..++..|.+|..+++...
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            368999999999999999999999999999998654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.24  E-value=0.015  Score=43.19  Aligned_cols=35  Identities=20%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      +.-++|+|||.|+-|.++|..|..-|-+|..|+|.
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            34468999999999999999999989999999975

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.22  E-value=0.019  Score=44.63  Aligned_cols=38  Identities=39%  Similarity=0.580  Sum_probs=34.1

Q ss_pred             cccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .-|+||++.|.|-+ .||+++|+.|...|++|+..+|+.
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34999999999955 599999999999999999999874

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.13  E-value=0.025  Score=41.22  Aligned_cols=38  Identities=26%  Similarity=0.254  Sum_probs=35.1

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ..+...+|.|||.|..|..-++.++++|++|..+|.+.
T Consensus        28 ~gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          28 PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            45678899999999999999999999999999999874

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.11  E-value=0.021  Score=43.86  Aligned_cols=37  Identities=27%  Similarity=0.435  Sum_probs=33.6

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +|.||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999994 5799999999999999999999874

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.09  E-value=0.016  Score=44.45  Aligned_cols=40  Identities=28%  Similarity=0.477  Sum_probs=35.3

Q ss_pred             cccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       149 ~~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ++|.||++.|-|-+ .||+++|+.|..-|++|+..+|+...
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   43 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA   43 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence            46999999999955 69999999999999999999987543

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=94.09  E-value=0.012  Score=42.97  Aligned_cols=32  Identities=31%  Similarity=0.400  Sum_probs=27.3

Q ss_pred             eEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +|||=|||+|||.+.|.+..=+.+|.+.+...
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~iv~INd~~   33 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVEVALINDLT   33 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEECCCc
Confidence            79999999999999999887778888876543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.05  E-value=0.02  Score=43.89  Aligned_cols=38  Identities=26%  Similarity=0.377  Sum_probs=33.8

Q ss_pred             ccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .|.||++.|.|-+ .||+++|+.|..-|++|+..+|+.+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3889999999955 5999999999999999999998753

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.04  E-value=0.012  Score=42.77  Aligned_cols=36  Identities=19%  Similarity=0.412  Sum_probs=32.6

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .|++|.|.| .|.+|+...+.+|.+|++|++.+++..
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~   63 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE   63 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEEeccccchhhhhhhhccccccccccccccc
Confidence            588999999 599999999999999999999988654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.98  E-value=0.023  Score=42.19  Aligned_cols=35  Identities=29%  Similarity=0.457  Sum_probs=31.9

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|.||.|+|.|.||...+..++.+|+ +|++.|++.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            58899999999999999999999999 788998865

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.025  Score=41.18  Aligned_cols=33  Identities=27%  Similarity=0.332  Sum_probs=27.6

Q ss_pred             CeEEEEecChHHHHHHHHhccC-CCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~f-g~~V~~~~~~~  186 (210)
                      .+|||=|||+|||.+.|.+... .++|.+.+...
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd~~   35 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL   35 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence            3799999999999999997754 68988887643

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.92  E-value=0.023  Score=44.02  Aligned_cols=37  Identities=30%  Similarity=0.376  Sum_probs=33.7

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999995 4699999999999999999999875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.90  E-value=0.045  Score=41.20  Aligned_cols=42  Identities=26%  Similarity=0.232  Sum_probs=37.0

Q ss_pred             cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ....-.+++|.|||-|-.|-..|..|+..|++|..+++....
T Consensus        43 ~~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          43 FRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             CCCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCcccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            345568999999999999999999999999999999986643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.023  Score=41.06  Aligned_cols=35  Identities=29%  Similarity=0.586  Sum_probs=32.0

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|.+|.|.| .|.+|....+.++.+|++|++.+++.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccc
Confidence            588999999 59999999999999999999998764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.88  E-value=0.023  Score=43.95  Aligned_cols=38  Identities=32%  Similarity=0.428  Sum_probs=34.0

Q ss_pred             cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.|.||++.|-|- +.||+++|+.|..-|++|+..||+.
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3589999999995 5699999999999999999999864

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.88  E-value=0.02  Score=43.84  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=33.2

Q ss_pred             cccCeEEEEecCh---HHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGN---IGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~---IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      |.||++.|-|-++   ||+++|+.|..-|++|+..+++.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            8899999999764   999999999999999999988643

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.86  E-value=0.031  Score=39.43  Aligned_cols=34  Identities=18%  Similarity=0.190  Sum_probs=27.3

Q ss_pred             CeEEEEecChHHHHHHHHhc--cCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLR--PFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~--~fg~~V~~~~~~~~  187 (210)
                      ++|+|||.|++|..+|-.+.  ++.-++..||....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            58999999999999998776  45458999997653

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=93.78  E-value=0.031  Score=40.03  Aligned_cols=33  Identities=15%  Similarity=0.385  Sum_probs=26.7

Q ss_pred             CeEEEEecChHHHH-HHHHhccC-CCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVE-LAKRLRPF-GVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~-vA~~~~~f-g~~V~~~~~~~  186 (210)
                      .+|||||+|++|+. ..+.++.+ ++++.++|+++
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~   36 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNP   36 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCH
Confidence            47999999999976 67777766 67888898864

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.73  E-value=0.032  Score=39.17  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=28.4

Q ss_pred             CeEEEEecChHHHHHHHHhccCC--CEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg--~~V~~~~~~~  186 (210)
                      .+|+|||.|++|+.+|-.+...+  -++..||...
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            37999999999999999988665  4899999765

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.73  E-value=0.025  Score=43.56  Aligned_cols=38  Identities=21%  Similarity=0.434  Sum_probs=34.1

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +|+||++.|-|- +.||+++|+.|..-|++|+..+|+.+
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLE   40 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            689999999995 56999999999999999999998753

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.028  Score=43.35  Aligned_cols=39  Identities=21%  Similarity=0.394  Sum_probs=35.2

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +..|.||++.|-| .+.||+++|+.|..-|++|+..||+.
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3568999999999 57899999999999999999999864

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.56  E-value=0.025  Score=39.25  Aligned_cols=45  Identities=18%  Similarity=0.172  Sum_probs=32.4

Q ss_pred             CeEEEEec-ChHHHHHHHHhccCCCEEE-EEcCCCCCCCcccCceeEE
Q 028302          154 KTVFILGF-GNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSGM  199 (210)
Q Consensus       154 ~tvGIiG~-G~IG~~vA~~~~~fg~~V~-~~~~~~~~~~~~~~~~~~~  199 (210)
                      .+|||+|+ |+.||.+++.+..-|+++. .+|+...+ .+...|+++.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~-~~~~~DVvID   47 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVE-ELDSPDVVID   47 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEE-ECSCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHH-HhccCCEEEE
Confidence            37999996 9999999999999999866 45654332 3344555544

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.41  E-value=0.041  Score=39.19  Aligned_cols=34  Identities=15%  Similarity=0.193  Sum_probs=27.9

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      ..+|+|||.|++|+.+|-.+..-+. ++..||...
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            3689999999999999988773333 899999765

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.34  E-value=0.033  Score=42.33  Aligned_cols=36  Identities=25%  Similarity=0.315  Sum_probs=33.1

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            78999999995 6699999999999999999999864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.34  E-value=0.032  Score=42.69  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=33.4

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|.||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            378999999995 5699999999999999999999874

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.04  Score=42.47  Aligned_cols=39  Identities=26%  Similarity=0.432  Sum_probs=35.3

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...|+||++.|-| -+.||+++|++|..-|++|+..+|+.
T Consensus         5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_           5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3569999999999 67899999999999999999999875

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.32  E-value=0.026  Score=43.85  Aligned_cols=40  Identities=30%  Similarity=0.379  Sum_probs=35.8

Q ss_pred             cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      ...+|+||++.|-| .+.||+++|+.|..-|++|+..+++.
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            34679999999999 89999999999999999999988764

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.095  Score=38.05  Aligned_cols=54  Identities=11%  Similarity=0.118  Sum_probs=43.0

Q ss_pred             ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEec
Q 028302          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLG  201 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~  201 (210)
                      +.++.||++.|||-++ +|+.+|.+|..-|++|..++...+.  ....++|.++...
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~~~~~aDivi~a~   90 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVAT   90 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECC
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHHHHhhccchhhcc
Confidence            5689999999999887 8999999999999999999876543  2444556555443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.29  E-value=0.023  Score=44.06  Aligned_cols=37  Identities=30%  Similarity=0.435  Sum_probs=33.7

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +|+||++.|-| .+.||+++|+.|..-|++|+..+|+.
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999999999 45599999999999999999999874

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.26  E-value=0.03  Score=39.54  Aligned_cols=32  Identities=9%  Similarity=0.140  Sum_probs=29.3

Q ss_pred             eEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+-|+|+|++|+.+++.|...|.+|+.++..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            58999999999999999999999999998754

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.22  E-value=0.024  Score=44.17  Aligned_cols=37  Identities=32%  Similarity=0.310  Sum_probs=33.9

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|+||++.|.| .+.||+++|+.|..-|++|+..+|+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999 56799999999999999999999874

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.22  E-value=0.033  Score=40.21  Aligned_cols=38  Identities=21%  Similarity=0.416  Sum_probs=33.5

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      --.|.||.|+|.|.+|...+..++.+|+ +|++.+++.+
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            3468999999999999999999999996 8999998764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.13  E-value=0.036  Score=43.90  Aligned_cols=37  Identities=27%  Similarity=0.321  Sum_probs=33.8

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+||+|.|.| .|-||+.+++.|..-|.+|++++|...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4689999999 899999999999999999999998654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.08  E-value=0.038  Score=42.67  Aligned_cols=37  Identities=24%  Similarity=0.398  Sum_probs=33.7

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +|.||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999999995 4699999999999999999999864

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.029  Score=43.04  Aligned_cols=36  Identities=31%  Similarity=0.315  Sum_probs=33.5

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |.||++.|-| -+.||+++|+.|..-|++|+..+|+.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            8999999988 78999999999999999999999874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.00  E-value=0.024  Score=41.07  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEE-EEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKI-IATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V-~~~~~~~  186 (210)
                      -.|.+|.|+|.|.||...++.++.+|+++ +..|++.
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            45889999999999999999999999965 4566654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=0.029  Score=42.97  Aligned_cols=38  Identities=32%  Similarity=0.425  Sum_probs=34.0

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +|+||++.|-| -+.||+++|+++..-|++|+..+|+.+
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            47899999999 667999999999999999999998753

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=92.95  E-value=0.037  Score=40.45  Aligned_cols=33  Identities=24%  Similarity=0.364  Sum_probs=26.0

Q ss_pred             CeEEEEecChHHHHHHHHhc----cCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLR----PFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~----~fg~~V~~~~~~~  186 (210)
                      .+|||=|||+|||.+.|.+-    .-.++|.+.+...
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~   38 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLG   38 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSS
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCC
Confidence            37999999999999999864    2357888877543

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=92.94  E-value=0.11  Score=37.61  Aligned_cols=54  Identities=17%  Similarity=0.163  Sum_probs=43.3

Q ss_pred             ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEec
Q 028302          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLG  201 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~  201 (210)
                      ..++.||++.|||-+. +|+.+|.+|..-|++|..++.+.+.  ....++|.++...
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~~~~ADivI~a~   88 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAV   88 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHHHHCSEEEECS
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHHHhhhhHhhhhc
Confidence            5689999999999988 8999999999999999999875542  2455566665543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.93  E-value=0.024  Score=38.91  Aligned_cols=29  Identities=28%  Similarity=0.399  Sum_probs=23.6

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEE
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIAT  182 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~  182 (210)
                      |.+-|+|+|.+|+.+++.|++.+..|+-.
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~i~vi~~   29 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSEVFVLAE   29 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGGEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHcCCCCEEEEc
Confidence            56889999999999999999776544433

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.85  E-value=0.041  Score=42.22  Aligned_cols=37  Identities=19%  Similarity=0.241  Sum_probs=33.7

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999995 6699999999999999999999875

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.83  E-value=0.058  Score=41.37  Aligned_cols=38  Identities=26%  Similarity=0.235  Sum_probs=34.1

Q ss_pred             cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -.|.+|++.|-|- +.||+++|+.|..-|++|+.++|+.
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4588999999994 6799999999999999999999864

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=92.81  E-value=0.083  Score=33.16  Aligned_cols=38  Identities=16%  Similarity=0.304  Sum_probs=33.2

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      -.+.+|.|.| .|.+|....+.+|.+|++|++..++++.
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            4688999988 5999999999999999999999887543

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=92.79  E-value=0.028  Score=41.00  Aligned_cols=31  Identities=29%  Similarity=0.315  Sum_probs=25.5

Q ss_pred             CeEEEEecChHHHHHHHHhcc-CCCEEEEEcC
Q 028302          154 KTVFILGFGNIGVELAKRLRP-FGVKIIATKR  184 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~-fg~~V~~~~~  184 (210)
                      -+|||=|||+|||.+.|.+-. -..+|.+.+.
T Consensus         2 ikIgINGFGRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             cEEEEECCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            489999999999999998763 3578888754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.79  E-value=0.03  Score=43.43  Aligned_cols=39  Identities=31%  Similarity=0.387  Sum_probs=35.2

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++|+||++.|-| -+.||+++|+.|..-|++|+..+|+..
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~   42 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE   42 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            579999999998 678999999999999999999998753

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.78  E-value=0.043  Score=36.93  Aligned_cols=35  Identities=23%  Similarity=0.242  Sum_probs=29.1

Q ss_pred             cCeEEEEecChHHHHHHHHh---ccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRL---RPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~---~~fg~~V~~~~~~~~  187 (210)
                      .+++.|||-|-||-++|..+   +.+|.+|..+.+..+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            37999999999999999764   456999999987643

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.72  E-value=0.038  Score=43.94  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=33.0

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      +.|||.|+| .|.||+.+++.|..-|.+|++..|.+..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~   39 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG   39 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcch
Confidence            468999999 7999999999999999999999886543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=92.70  E-value=0.051  Score=41.59  Aligned_cols=38  Identities=29%  Similarity=0.257  Sum_probs=34.2

Q ss_pred             ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .|.||++.|-|- +.||+++|+.|..-|++|+..|+...
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            489999999995 56999999999999999999998764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.69  E-value=0.039  Score=39.67  Aligned_cols=35  Identities=26%  Similarity=0.303  Sum_probs=30.8

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|++.
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            47899999999999999999999997 677788764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.67  E-value=0.043  Score=41.82  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=32.7

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      +.|+|.|.| .|.||+.+++.|..-|.+|++++|....
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            468999999 6999999999999889999999987544

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=92.60  E-value=0.05  Score=41.76  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=34.2

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      |.||++.|-| -+.||+++|+.|..-|++|+..+++.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            7899999999 788999999999999999999998754

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=92.60  E-value=0.045  Score=42.62  Aligned_cols=36  Identities=31%  Similarity=0.458  Sum_probs=33.6

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |+||++.|-| .+.||+++|+.|..-|++|+..+|+.
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            8899999999 57999999999999999999999874

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.60  E-value=0.035  Score=42.77  Aligned_cols=36  Identities=28%  Similarity=0.348  Sum_probs=33.3

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |+||++.|-| .+.||+++|+.|..-|++|+..+|+.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            8899999999 47899999999999999999999864

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=92.57  E-value=0.068  Score=37.65  Aligned_cols=33  Identities=18%  Similarity=0.265  Sum_probs=27.7

Q ss_pred             CeEEEEecChHHHHHHHHhc--cCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLR--PFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~--~fg~~V~~~~~~~  186 (210)
                      .+|+|||.|++|..+|-.+.  ++.-++..+|...
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            47999999999999987766  6656899999764

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.40  E-value=0.048  Score=39.53  Aligned_cols=30  Identities=23%  Similarity=0.327  Sum_probs=25.6

Q ss_pred             eEEEEecChHHHHHHHHhccC-CCEEEEEcC
Q 028302          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~~f-g~~V~~~~~  184 (210)
                      +|||=|||+|||.+.|.+-.- +++|.+.+.
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd   32 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIND   32 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECC
Confidence            799999999999999998743 678888764

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=92.33  E-value=0.071  Score=40.02  Aligned_cols=37  Identities=24%  Similarity=0.189  Sum_probs=33.3

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .+.++|.|||.|-.|-..|..|+..|.+|..+++.+.
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3568999999999999999999999999999998653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.31  E-value=0.037  Score=42.66  Aligned_cols=37  Identities=30%  Similarity=0.385  Sum_probs=32.6

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      |+||++.|-|- +.||+++|+.|..-|++|+..+|+..
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~   39 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA   39 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            78999999885 55999999999999999999998753

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.30  E-value=0.055  Score=41.85  Aligned_cols=37  Identities=30%  Similarity=0.410  Sum_probs=33.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|.||++.|-| -+.||+++|+.|..-|++|+..||+.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999 56699999999999999999999864

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.23  E-value=0.04  Score=42.42  Aligned_cols=37  Identities=27%  Similarity=0.342  Sum_probs=32.0

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      +.|.||++.|-| .+.||+++|+.|..-|++|+..+++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            579999999999 5569999999999999999875443

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.21  E-value=0.062  Score=34.76  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             CeEEEEecChHHH-HHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGV-ELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~-~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++|=+||.|.+|- .+|+.|+..|++|.++|+...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~   36 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET   36 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            5788999999997 789999999999999998753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.21  E-value=0.05  Score=41.78  Aligned_cols=37  Identities=27%  Similarity=0.217  Sum_probs=33.2

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -..|+|.|||-|-.|-..|..|+..|.+|..+++...
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3457999999999999999999999999999998654

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=92.18  E-value=0.059  Score=39.24  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=26.0

Q ss_pred             eEEEEecChHHHHHHHHhcc-CCCEEEEEcCC
Q 028302          155 TVFILGFGNIGVELAKRLRP-FGVKIIATKRS  185 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~~-fg~~V~~~~~~  185 (210)
                      +|||=|||+|||.+.|.+-. -+++|.+.+..
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd~   34 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcCC
Confidence            79999999999999999863 36788887753

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=92.17  E-value=0.094  Score=37.22  Aligned_cols=34  Identities=18%  Similarity=0.160  Sum_probs=25.1

Q ss_pred             CeEEEEecChHHHH-HHHHhccC-CCEEE-EEcCCCC
Q 028302          154 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~-vA~~~~~f-g~~V~-~~~~~~~  187 (210)
                      .+|||||+|++|+. .++.++.+ +++++ .+|++..
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~   38 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRA   38 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCT
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhH
Confidence            47999999999986 46666644 78876 4666543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.054  Score=42.71  Aligned_cols=37  Identities=24%  Similarity=0.460  Sum_probs=33.8

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|.||++.|-| .+.||+++|+.|..-|++|+..+|+.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            49999999999 56699999999999999999999864

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.09  E-value=0.048  Score=42.03  Aligned_cols=37  Identities=27%  Similarity=0.360  Sum_probs=33.6

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|+||++.|-| .+.||+++|+.|..-|++|+..+|+.
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999 46799999999999999999999864

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.08  E-value=0.085  Score=36.87  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=27.8

Q ss_pred             CeEEEEecChHHHHHHHHhc--cCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLR--PFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~--~fg~~V~~~~~~~  186 (210)
                      .+|.|||.|++|..+|-.+.  ++.-++..+|...
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            37999999999999998766  6667999999753

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.06  E-value=0.057  Score=41.45  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=31.2

Q ss_pred             cCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .++|.|.| .|.||+.+++.|..-|.+|++.+|...
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            46799999 699999999999999999999998654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=91.98  E-value=0.042  Score=42.22  Aligned_cols=37  Identities=32%  Similarity=0.425  Sum_probs=33.8

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|+||++.|-| .+.||+++|++|..-|++|+..+|+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            38999999999 67799999999999999999999864

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.042  Score=45.83  Aligned_cols=36  Identities=31%  Similarity=0.408  Sum_probs=32.4

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      -|++++|.|||+|.+|.++++-|...|. ++..+|..
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             HHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            4788999999999999999999998888 78899874

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.78  E-value=0.099  Score=37.99  Aligned_cols=39  Identities=26%  Similarity=0.395  Sum_probs=34.8

Q ss_pred             cccccccCeEEEEecChH-HHHHHHHhccCCCEEEEEcCC
Q 028302          147 TGETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       147 ~~~~l~~~tvGIiG~G~I-G~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .+.+++||++.|||-++| |+-+|.+|..-|++|...+..
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            456899999999999886 999999999999999988753

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.72  E-value=0.068  Score=41.19  Aligned_cols=36  Identities=28%  Similarity=0.300  Sum_probs=32.9

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |.||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            78999999994 5699999999999999999999875

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.56  E-value=0.085  Score=37.20  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=27.9

Q ss_pred             CeEEEEe-cChHHHHHHHHhccCCC--EEEEEcCCC
Q 028302          154 KTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG-~G~IG~~vA~~~~~fg~--~V~~~~~~~  186 (210)
                      .+|+||| .|++|+.+|-.+...+.  ++..+|...
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            3799999 59999999999987774  899998753

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.54  E-value=0.2  Score=37.80  Aligned_cols=55  Identities=24%  Similarity=0.355  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       115 ~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      -+|=-+++.+|+..|-.                +..|++.++.+.|.|+-|-.+|+.+...+. +++.+|+.
T Consensus         4 GTaaV~LAgll~a~~~~----------------g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1           4 GTAVVVSAAFLNALKLT----------------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             HHHHHHHHHHHHHHHHH----------------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             hHHHHHHHHHHHHHHHh----------------CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            34556778888888754                678999999999999999999999997777 68899986

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.54  E-value=0.054  Score=41.67  Aligned_cols=37  Identities=27%  Similarity=0.374  Sum_probs=33.5

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|+||++.|-| .+.||+++|+.|..-|++|+..+++.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999 55699999999999999999999864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.54  E-value=0.049  Score=42.34  Aligned_cols=36  Identities=31%  Similarity=0.356  Sum_probs=32.9

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |.||++.|-| .+.||+++|+.|..-|++|+..+|+.
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            7899999999 45699999999999999999999864

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.54  E-value=0.053  Score=41.85  Aligned_cols=37  Identities=27%  Similarity=0.251  Sum_probs=33.8

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|+||++.|-| .+.||+++|+.|..-|++|+..+|+.
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999 67899999999999999999999864

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=91.50  E-value=0.098  Score=38.80  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=31.9

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.++|.|||-|-.|-.+|..|+.-|.+|..+++..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35689999999999999999999999999999854

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=91.41  E-value=0.061  Score=41.35  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=32.7

Q ss_pred             ccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +|+||++.|-|-+ .||+++|+.+..-|++|+..+|+..
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            5899999999955 6999999999999999887766543

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.30  E-value=0.07  Score=36.62  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=25.7

Q ss_pred             CeEEEEecChHHHHHHHHhc-cCCCEEEE-EcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLR-PFGVKIIA-TKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~-~fg~~V~~-~~~~~  186 (210)
                      .++.|+|.|+.|+++++.+. .-++++++ +|..+
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            37999999999999999765 55788665 56544

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=91.26  E-value=0.17  Score=36.32  Aligned_cols=41  Identities=20%  Similarity=0.288  Sum_probs=35.2

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      +....+.+|.|-| .|.+|....+++|.+|++|++..++..+
T Consensus        19 g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k   60 (167)
T d1tt7a2          19 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA   60 (167)
T ss_dssp             TCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred             cCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHH
Confidence            3445688899999 6999999999999999999999887643

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.24  E-value=0.047  Score=39.27  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=31.4

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .|++|.|.| -|.+|+.+++.++.+|++|++.+++..
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~   64 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ   64 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchH
Confidence            478999995 555999999999999999999988754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.98  E-value=0.13  Score=36.00  Aligned_cols=33  Identities=15%  Similarity=-0.037  Sum_probs=27.2

Q ss_pred             CeEEEEecChHHHHHHHHhc--cCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLR--PFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~--~fg~~V~~~~~~~  186 (210)
                      .+|+|||.|++|..+|-.+.  ++--++..+|...
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            47999999999999999887  4444799999653

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.033  Score=47.75  Aligned_cols=50  Identities=18%  Similarity=0.194  Sum_probs=40.6

Q ss_pred             HHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302          134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (210)
Q Consensus       134 ~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~  185 (210)
                      |+|+++-  |.......|...+|.|||+|.+|.++|+-|.-.|. ++..+|..
T Consensus         8 YdRQlrl--wG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1           8 YDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             THHHHHH--HHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             hhHHHHh--hhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            4445442  66556678999999999999999999999998887 68888874

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.74  E-value=0.087  Score=38.41  Aligned_cols=36  Identities=22%  Similarity=0.256  Sum_probs=31.2

Q ss_pred             ccCeEEEE--ecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFIL--GFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIi--G~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .|+++.|+  |.|.+|+...+.+|.+|++|++.-++..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~   65 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP   65 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCT
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEeccc
Confidence            47899998  6899999999999999999998866543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.51  E-value=0.091  Score=37.32  Aligned_cols=30  Identities=37%  Similarity=0.374  Sum_probs=26.0

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEE
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIA  181 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~  181 (210)
                      .+++|.|||-|.+|-++|..++.+|.+|..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v   31 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNI   31 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEE
Confidence            468999999999999999999988876443

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.50  E-value=0.07  Score=38.50  Aligned_cols=30  Identities=17%  Similarity=0.340  Sum_probs=23.3

Q ss_pred             CeEEEEecChHHHHHHHHhc----cCCCEEEEEc
Q 028302          154 KTVFILGFGNIGVELAKRLR----PFGVKIIATK  183 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~----~fg~~V~~~~  183 (210)
                      -+|+|+|+|++|+.+++.+.    .+..+|.+.-
T Consensus         5 i~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~   38 (168)
T d1ebfa1           5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLA   38 (168)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEE
T ss_pred             EEEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEE
Confidence            37899999999999999876    3455666653

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.48  E-value=0.15  Score=35.63  Aligned_cols=40  Identities=25%  Similarity=0.310  Sum_probs=34.1

Q ss_pred             ccccccCeEEEE--ecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          148 GETLLGKTVFIL--GFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIi--G~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      ++..-++.+.|+  |-|.||-++|..++.+|++|..+.+...
T Consensus        34 ~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          34 GKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            345567788887  8899999999999999999999998653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.48  E-value=0.089  Score=37.55  Aligned_cols=37  Identities=19%  Similarity=0.364  Sum_probs=31.4

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      -.|.||.|+|.|.+|...++.++.+|+ +|+..+++..
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~   64 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD   64 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHH
Confidence            357899999999999999999999997 5777776543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.15  E-value=0.12  Score=39.56  Aligned_cols=36  Identities=25%  Similarity=0.336  Sum_probs=32.3

Q ss_pred             cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +.||++.|-|- +.||+++|+.+..-|++|+..+|+.
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46899999995 6699999999999999999999875

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.06  E-value=0.13  Score=40.55  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=34.0

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .|.||++.|-| -+.||+++|+.|..-|++|+..|+...
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            58999999999 566999999999999999999998654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.06  E-value=0.066  Score=38.53  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=31.4

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|.+|.|.| .|.+|+..++.++.+|++|++..++.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~   60 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   60 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccc
Confidence            478999988 59999999999999999999988754

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=90.01  E-value=0.096  Score=37.84  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=31.9

Q ss_pred             ccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .|++|.|.|. |.+|+..++.+|.+|++|++..++.
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~   64 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD   64 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCH
Confidence            5899999997 7799999999999999999998765

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=89.96  E-value=0.12  Score=38.86  Aligned_cols=34  Identities=12%  Similarity=0.134  Sum_probs=26.3

Q ss_pred             ccCeEEEEecChHHH-HHHHHhccC-CCEEE-EEcCC
Q 028302          152 LGKTVFILGFGNIGV-ELAKRLRPF-GVKII-ATKRS  185 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~-~vA~~~~~f-g~~V~-~~~~~  185 (210)
                      +.-+|||||+|++|+ .+++.++.. +++|. .+|++
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~   68 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGN   68 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSC
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCC
Confidence            456999999999997 466776655 78887 56765

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=89.85  E-value=0.18  Score=35.95  Aligned_cols=33  Identities=33%  Similarity=0.348  Sum_probs=24.5

Q ss_pred             CeEEEEecChHHHH-HHHHhccC-CCEEEEE-cCCC
Q 028302          154 KTVFILGFGNIGVE-LAKRLRPF-GVKIIAT-KRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~-vA~~~~~f-g~~V~~~-~~~~  186 (210)
                      .++||||.|.||+. +.+.++.+ ..++.++ |++.
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~   40 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDA   40 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCT
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecch
Confidence            58999999999986 67888855 4466654 6654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.67  E-value=0.2  Score=36.25  Aligned_cols=40  Identities=15%  Similarity=0.272  Sum_probs=33.2

Q ss_pred             cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      ....+.+|.|.| .|.+|....+++|.+|++|++..++.+.
T Consensus        28 ~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k   68 (177)
T d1o89a2          28 VRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (177)
T ss_dssp             CCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             CCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhH
Confidence            345566788877 6999999999999999999999887643

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.63  E-value=0.14  Score=35.99  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=27.5

Q ss_pred             CeEEEEe-cChHHHHHHHHhccCCC--EEEEEcCCC
Q 028302          154 KTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG-~G~IG~~vA~~~~~fg~--~V~~~~~~~  186 (210)
                      .+|+||| .|++|+.+|-.+..-+.  ++..+|...
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            4799999 59999999999985555  799999743

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=89.59  E-value=0.15  Score=36.76  Aligned_cols=34  Identities=26%  Similarity=0.277  Sum_probs=25.4

Q ss_pred             cCeEEEEecChHHHH-HHHHhccCC--CEEEE-EcCCC
Q 028302          153 GKTVFILGFGNIGVE-LAKRLRPFG--VKIIA-TKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~-vA~~~~~fg--~~V~~-~~~~~  186 (210)
                      ..++||||+|.+|+. .++.++.++  ++|.+ +|++.
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~   40 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTR   40 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSH
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccH
Confidence            458999999999987 477777654  57774 56653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.56  E-value=0.25  Score=34.46  Aligned_cols=32  Identities=31%  Similarity=0.403  Sum_probs=27.8

Q ss_pred             CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+|.|||-|.+|-++|..|+. +.+|..+++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            379999999999999999986 67999998754

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.51  E-value=0.17  Score=35.41  Aligned_cols=31  Identities=13%  Similarity=0.299  Sum_probs=26.1

Q ss_pred             CeEEEEe-cChHHHHHHHHhc--cCCCEEEEEcC
Q 028302          154 KTVFILG-FGNIGVELAKRLR--PFGVKIIATKR  184 (210)
Q Consensus       154 ~tvGIiG-~G~IG~~vA~~~~--~fg~~V~~~~~  184 (210)
                      .+|+||| .|++|+.+|-.+.  ++.-++..+|.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            4799999 6999999999987  44448999995

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.35  E-value=0.21  Score=39.19  Aligned_cols=34  Identities=24%  Similarity=0.227  Sum_probs=29.2

Q ss_pred             CeEEEEecChHHHHHHHHhc--cCCCEEEEEcCCCC
Q 028302          154 KTVFILGFGNIGVELAKRLR--PFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG~G~IG~~vA~~~~--~fg~~V~~~~~~~~  187 (210)
                      |+|.|||.|.-|-.+|+.|+  +.+.+|..+.++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            78999999999999998875  45579999998754

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.21  E-value=0.18  Score=36.22  Aligned_cols=36  Identities=17%  Similarity=0.101  Sum_probs=32.3

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +++.|.|||-|..|-..|..++-+|++|+.+++...
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc
Confidence            577899999999999999999999999999987543

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.16  E-value=0.31  Score=33.09  Aligned_cols=40  Identities=25%  Similarity=0.217  Sum_probs=35.9

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +.--+||+|.|||-|+.+-.-|-.|..+.-+|+.+-|+.+
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            3446899999999999999999999999999999988754

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.98  E-value=0.21  Score=36.63  Aligned_cols=38  Identities=16%  Similarity=0.357  Sum_probs=33.1

Q ss_pred             cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .+++||+|.|||.|+.|-.+|.-+..-+.++...-+++
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            57999999999999999999999988888877766654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.54  E-value=0.15  Score=36.23  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=30.9

Q ss_pred             ccCeEEEEec-ChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302          152 LGKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~-~V~~~~~~~  186 (210)
                      .|.+|.|+|. |.+|...++.++.+|. +|+..+++.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccch
Confidence            5789999995 9999999999999995 899998764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.47  E-value=0.18  Score=35.86  Aligned_cols=38  Identities=24%  Similarity=0.358  Sum_probs=32.6

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~  187 (210)
                      --.|.+|.|+|.|.+|...+..++.+|. +|++.|++..
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            3468899999999999999999997777 6888988764

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.65  E-value=0.24  Score=38.86  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=31.1

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      .-|++.|.| .|-||+.+++.|...|.+|+++|+..
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            447899988 99999999999999999999999743

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.64  E-value=0.22  Score=35.85  Aligned_cols=32  Identities=25%  Similarity=0.261  Sum_probs=29.8

Q ss_pred             EEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       156 vGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      |.|||.|-.|-..|..|...|.+|+.+++...
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            78999999999999999999999999998754

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.63  E-value=0.26  Score=33.84  Aligned_cols=35  Identities=34%  Similarity=0.443  Sum_probs=29.7

Q ss_pred             cCeEEEEecChHHHHHHHHh----ccCCCEEEEEcCCCC
Q 028302          153 GKTVFILGFGNIGVELAKRL----RPFGVKIIATKRSWA  187 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~----~~fg~~V~~~~~~~~  187 (210)
                      .+++.|||-|-||-++|--+    +.+|.+|..+.+...
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            57999999999999988766    578999999987543

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.62  E-value=0.47  Score=35.12  Aligned_cols=40  Identities=25%  Similarity=0.522  Sum_probs=32.6

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhc--------------------cCCC-EEEEEcCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLR--------------------PFGV-KIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~--------------------~fg~-~V~~~~~~~~  187 (210)
                      ...+.|++|.|||-|+.+-.+||.+.                    ..|. +|..+-|+..
T Consensus        34 ~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          34 SPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            45678999999999999999999875                    5777 5877777654

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.38  E-value=0.29  Score=34.81  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=31.2

Q ss_pred             ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      +|.|+||.+|| ..++....+..+.-||+++....|.
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~   37 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPE   37 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCT
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEeccc
Confidence            47899999999 4557788899999999999999874

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=87.28  E-value=0.22  Score=39.25  Aligned_cols=34  Identities=29%  Similarity=0.437  Sum_probs=30.4

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .||+|.|.| .|-||+.+++.|...|.+|++..|+
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            499999999 7889999999999889999987664

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.27  E-value=0.44  Score=31.64  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=27.7

Q ss_pred             cCeEEEEecChHHHHHHHHhccCC---CEEEEEcCCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFG---VKIIATKRSW  186 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg---~~V~~~~~~~  186 (210)
                      .+++.|||-|-||-++|..++.|+   .+|..+.+..
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            479999999999999997766555   5788887754

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.22  E-value=0.35  Score=33.80  Aligned_cols=33  Identities=33%  Similarity=0.403  Sum_probs=27.1

Q ss_pred             CeEEEEe-cChHHHHHHHHhc---cCCCEEEEEcCCC
Q 028302          154 KTVFILG-FGNIGVELAKRLR---PFGVKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG-~G~IG~~vA~~~~---~fg~~V~~~~~~~  186 (210)
                      .+|+||| .|++|+.+|-.++   ++.-++..+|...
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            3799999 5999999998753   5778999999743

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.13  E-value=0.51  Score=33.96  Aligned_cols=41  Identities=24%  Similarity=0.235  Sum_probs=36.0

Q ss_pred             ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      +....|.+|.|.| -|.+|....++++.+|++|++..++.+.
T Consensus        27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k   68 (176)
T d1xa0a2          27 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE   68 (176)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             CCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH
Confidence            4556799999999 7999999999999999999999877543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.13  E-value=0.3  Score=36.71  Aligned_cols=36  Identities=25%  Similarity=0.403  Sum_probs=32.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +..+|.|||-|--|-..|..|+..|.+|+.+..+..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            456799999999999999999999999999987654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.71  E-value=0.18  Score=36.74  Aligned_cols=32  Identities=28%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             EEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       156 vGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      |.|||-|..|-..|..+..+|.+|+.+++..+
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~   37 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA   37 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            78999999999999999999999999987543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=0.41  Score=35.51  Aligned_cols=38  Identities=34%  Similarity=0.479  Sum_probs=31.8

Q ss_pred             cccCeEEEEe-cChHHHHHHHHhccCCC--EEEEEcCCCCC
Q 028302          151 LLGKTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWAS  188 (210)
Q Consensus       151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~--~V~~~~~~~~~  188 (210)
                      ..+++|.|.| .|-||+.+++.|..-|.  +|+.++|++..
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~   52 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   52 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhh
Confidence            5678999999 99999999999965554  89999986543

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.50  E-value=0.53  Score=31.05  Aligned_cols=36  Identities=17%  Similarity=0.113  Sum_probs=31.6

Q ss_pred             CeEEEEec----------ChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302          154 KTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASH  189 (210)
Q Consensus       154 ~tvGIiG~----------G~IG~~vA~~~~~fg~~V~~~~~~~~~~  189 (210)
                      |+|||+|+          .+-.-.+.+.|+..|++|.+|||..++.
T Consensus        16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~   61 (108)
T d1dlja3          16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKL   61 (108)
T ss_dssp             CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCC
T ss_pred             CEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChh
Confidence            58999998          5778899999999999999999987543

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.35  E-value=0.68  Score=34.44  Aligned_cols=40  Identities=28%  Similarity=0.334  Sum_probs=33.5

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhcc--------------------CCC-EEEEEcCCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRP--------------------FGV-KIIATKRSWA  187 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~--------------------fg~-~V~~~~~~~~  187 (210)
                      ...+.|++|.|||-|+++-.+|+.|..                    .|. +|..+.|+..
T Consensus        34 ~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          34 APDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             CCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            456889999999999999999999875                    576 6888887764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.31  E-value=0.26  Score=38.53  Aligned_cols=37  Identities=22%  Similarity=0.251  Sum_probs=32.9

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      .....|.|||.|-.|-.+|+.|+..|.+|..+++...
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            3566799999999999999999999999999998654

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.27  E-value=0.21  Score=35.57  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             cCeEEEEecChHHHHHHHHhccCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFG  176 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg  176 (210)
                      ..+|||||+|++|+..++.++...
T Consensus         7 k~kv~iIG~G~~g~~h~~~l~~~~   30 (172)
T d1lc0a1           7 KFGVVVVGVGRAGSVRLRDLKDPR   30 (172)
T ss_dssp             SEEEEEECCSHHHHHHHHHHTSHH
T ss_pred             CcEEEEEcCCHHHHHHHHHHHhCC
Confidence            348999999999999998888653

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.24  E-value=0.25  Score=35.58  Aligned_cols=36  Identities=14%  Similarity=0.004  Sum_probs=32.1

Q ss_pred             cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -+.++|.|||-|..|-..|-.|.-+|++|+.+++..
T Consensus         3 ~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            356899999999999999999999999999998654

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.22  E-value=0.28  Score=33.66  Aligned_cols=37  Identities=27%  Similarity=0.215  Sum_probs=32.9

Q ss_pred             cccccCeEEEEec----------ChHHHHHHHHhccCCCEEEEEcCC
Q 028302          149 ETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       149 ~~l~~~tvGIiG~----------G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ..+.+++|||+|+          ++-...+++.|...|++|.+|||.
T Consensus         9 ~~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~   55 (136)
T d1mv8a3           9 TSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRN   55 (136)
T ss_dssp             TTSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HhcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCC
Confidence            3567899999998          578899999999999999999984

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.17  E-value=0.25  Score=36.17  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=29.9

Q ss_pred             eEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      -|.|||-|..|-..|..+..+|++|..+++..+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            378999999999999999999999999997644

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.07  E-value=0.2  Score=35.03  Aligned_cols=30  Identities=33%  Similarity=0.485  Sum_probs=26.8

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEE
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKI  179 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V  179 (210)
                      .-.|++|.|||-|++|-.+|+-+..+|+++
T Consensus        26 ~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          26 APVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            346899999999999999999999999863

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.93  E-value=0.4  Score=35.23  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=29.5

Q ss_pred             EEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       156 vGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      |.|||-|..|...|..++.+|++|..++..++
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~~~   37 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP   37 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            78999999999999999999999999997543

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.62  E-value=0.63  Score=31.07  Aligned_cols=34  Identities=15%  Similarity=0.348  Sum_probs=30.3

Q ss_pred             CeEEEEe----cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          154 KTVFILG----FGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       154 ~tvGIiG----~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      |+|.|||    -|..|..+.+.|+.+|++|+.++|+..
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~   39 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYD   39 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccc
Confidence            7899999    468899999999999999999998754

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.57  E-value=0.25  Score=36.19  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=30.0

Q ss_pred             cCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      ..-|.|||.|..|...|..++.+|.+|..+++.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            356899999999999999999999999999864

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.40  E-value=1.1  Score=30.85  Aligned_cols=31  Identities=23%  Similarity=0.295  Sum_probs=23.4

Q ss_pred             cCeEEEEe-cChHHHHHHHHhc--cC-CCEEEEEc
Q 028302          153 GKTVFILG-FGNIGVELAKRLR--PF-GVKIIATK  183 (210)
Q Consensus       153 ~~tvGIiG-~G~IG~~vA~~~~--~f-g~~V~~~~  183 (210)
                      ..+||||| .|-+|+++.++|.  .| ..++..+.
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~   36 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA   36 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEe
Confidence            36899999 5999999999994  44 34665553

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.37  E-value=0.42  Score=33.01  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=25.4

Q ss_pred             eEEEEe-cChHHHHHHHHhc-cCCCEEE-EEcCCC
Q 028302          155 TVFILG-FGNIGVELAKRLR-PFGVKII-ATKRSW  186 (210)
Q Consensus       155 tvGIiG-~G~IG~~vA~~~~-~fg~~V~-~~~~~~  186 (210)
                      +|+|+| .|+.|+++++.+. .-++++. ++|+..
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~   35 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD   35 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence            699999 7999999999765 6778865 567643

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.32  E-value=0.36  Score=33.94  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=29.1

Q ss_pred             ccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (210)
Q Consensus       152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~  186 (210)
                      .+++|.|||-|++|-.+|.-+.-+|++ |+.+.|+.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            466799999999999999999989885 66666654

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.26  E-value=0.51  Score=34.16  Aligned_cols=36  Identities=19%  Similarity=0.166  Sum_probs=32.7

Q ss_pred             ccccCeEEEEec--ChHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILGF--GNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG~--G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      .|.|.||++||=  -++....+..+.-|||++....|.
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~   39 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPK   39 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccH
Confidence            589999999994  589999999999999999999984

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.25  E-value=0.54  Score=32.86  Aligned_cols=32  Identities=25%  Similarity=0.414  Sum_probs=22.9

Q ss_pred             CeEEEEe-cChHHHHHHHHhc---cC-CCEEEEEcCC
Q 028302          154 KTVFILG-FGNIGVELAKRLR---PF-GVKIIATKRS  185 (210)
Q Consensus       154 ~tvGIiG-~G~IG~~vA~~~~---~f-g~~V~~~~~~  185 (210)
                      |+||||| .|-+||++.++|.   .| -.++.++..+
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss   38 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS   38 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecc
Confidence            5899999 5999999998652   33 3456656543

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.14  E-value=0.39  Score=34.64  Aligned_cols=33  Identities=27%  Similarity=0.252  Sum_probs=27.3

Q ss_pred             CeEEEEe-cChHHHHHHHHhccCC--CEEEEEcCCC
Q 028302          154 KTVFILG-FGNIGVELAKRLRPFG--VKIIATKRSW  186 (210)
Q Consensus       154 ~tvGIiG-~G~IG~~vA~~~~~fg--~~V~~~~~~~  186 (210)
                      +||.|.| .|.||+.+++.|..-|  ..|+..+|++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~   39 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA   39 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCH
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCH
Confidence            6899999 8999999999997555  6677777754

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.73  E-value=0.5  Score=37.15  Aligned_cols=37  Identities=27%  Similarity=0.277  Sum_probs=32.6

Q ss_pred             ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (210)
Q Consensus       152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~  188 (210)
                      .+++|.|.| .|-||+.+++.|..-|-+|+++|+...+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~   51 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE   51 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCcc
Confidence            567899999 9999999999999999999999875543

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.45  E-value=0.57  Score=32.94  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=31.3

Q ss_pred             cccCeEEEEec--ChHHHHHHHHhccCCCEEEEEcCC
Q 028302          151 LLGKTVFILGF--GNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       151 l~~~tvGIiG~--G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      |.|++|.+||=  .++-...+..+.-|||++....|.
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~   37 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPE   37 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCG
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecch
Confidence            67999999993  579999999999999999998874

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.18  E-value=0.41  Score=34.80  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=28.5

Q ss_pred             EEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       156 vGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      |.|||.|..|-..|..++.+|.+|..+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            7899999999999999999999999998643

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.93  E-value=0.54  Score=33.34  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=29.4

Q ss_pred             ccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCC
Q 028302          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       150 ~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      +|.|+||++||=| ++-...+..+.-|||++....+.
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~   37 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPK   37 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCT
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEecc
Confidence            4789999999954 45567777788899999999874

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=82.63  E-value=0.34  Score=34.23  Aligned_cols=31  Identities=29%  Similarity=0.392  Sum_probs=26.3

Q ss_pred             CeEEEEe-cChHHHHHHHHhccC--CCEEEEEcC
Q 028302          154 KTVFILG-FGNIGVELAKRLRPF--GVKIIATKR  184 (210)
Q Consensus       154 ~tvGIiG-~G~IG~~vA~~~~~f--g~~V~~~~~  184 (210)
                      |+|.|+| .|+||+.....++.+  .++|.+..-
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa   36 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA   36 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence            7999999 999999999999765  678877653

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=82.42  E-value=0.99  Score=31.11  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=31.9

Q ss_pred             ccCeEEEEec----ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          152 LGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       152 ~~~tvGIiG~----G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      +-|+|.|||.    |+.|..+++.++.+|++|+.++++..
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~   57 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE   57 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccc
Confidence            4689999995    57999999999999999999998754

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=82.42  E-value=0.53  Score=37.14  Aligned_cols=55  Identities=13%  Similarity=0.083  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-----------EEEEEcC
Q 028302          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-----------KIIATKR  184 (210)
Q Consensus       116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-----------~V~~~~~  184 (210)
                      +|=-+++.+++.+|-.                ++.|.+.++.|.|.|.-|-.+|+.+.....           +++.+|+
T Consensus         4 Ta~V~lAglinAlki~----------------gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~   67 (308)
T d1o0sa1           4 TASVIVAGLLTCTRVT----------------KKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDI   67 (308)
T ss_dssp             HHHHHHHHHHHHHHHH----------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEET
T ss_pred             HHHHHHHHHHHHHHHh----------------CCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeC
Confidence            4556677777777643                678999999999999999999999875422           3899998


Q ss_pred             CC
Q 028302          185 SW  186 (210)
Q Consensus       185 ~~  186 (210)
                      .+
T Consensus        68 ~G   69 (308)
T d1o0sa1          68 DG   69 (308)
T ss_dssp             TE
T ss_pred             CC
Confidence            64

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=81.80  E-value=0.43  Score=33.70  Aligned_cols=31  Identities=29%  Similarity=0.412  Sum_probs=25.9

Q ss_pred             CeEEEEe-cChHHHHHHHHhccC--CCEEEEEcC
Q 028302          154 KTVFILG-FGNIGVELAKRLRPF--GVKIIATKR  184 (210)
Q Consensus       154 ~tvGIiG-~G~IG~~vA~~~~~f--g~~V~~~~~  184 (210)
                      |+|.|+| .|+||+......+.+  .++|.+..-
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa   35 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA   35 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe
Confidence            6899999 999999999988866  578877653

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=81.58  E-value=1.1  Score=30.08  Aligned_cols=39  Identities=31%  Similarity=0.309  Sum_probs=35.1

Q ss_pred             ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      +...+||+|.|||-|+-+-.-|..|..+.-+|+.+-|+.
T Consensus        25 ~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          25 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             hhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            456789999999999999999999999999999987754

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.22  E-value=0.61  Score=36.55  Aligned_cols=55  Identities=16%  Similarity=0.172  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-----------EEEEEcC
Q 028302          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-----------KIIATKR  184 (210)
Q Consensus       116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-----------~V~~~~~  184 (210)
                      +|=-+++.+|+.+|-.                ++.|.+.+|.|.|.|+-|-.+|+.+...+.           +|+.+|+
T Consensus         4 Ta~V~lAglinAlki~----------------gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~   67 (294)
T d1pj3a1           4 TAAVALAGLLAAQKVI----------------SKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDK   67 (294)
T ss_dssp             HHHHHHHHHHHHHHHH----------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEET
T ss_pred             HHHHHHHHHHHHHHHh----------------CCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeC
Confidence            4556777788877744                678999999999999999999999875543           4999998


Q ss_pred             CC
Q 028302          185 SW  186 (210)
Q Consensus       185 ~~  186 (210)
                      .+
T Consensus        68 ~G   69 (294)
T d1pj3a1          68 YG   69 (294)
T ss_dssp             TE
T ss_pred             CC
Confidence            53

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.90  E-value=0.58  Score=35.37  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             cccccCeEEEEec-ChHHHHHHHHhc---cCCCEEEEEcCCC
Q 028302          149 ETLLGKTVFILGF-GNIGVELAKRLR---PFGVKIIATKRSW  186 (210)
Q Consensus       149 ~~l~~~tvGIiG~-G~IG~~vA~~~~---~fg~~V~~~~~~~  186 (210)
                      ..|.||++.|-|- +.||+++|+.|.   .=|++|+..+|+.
T Consensus         2 ~~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~   43 (259)
T d1oaaa_           2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH
Confidence            3688998888885 579999999985   4589999999864

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=80.23  E-value=0.61  Score=34.88  Aligned_cols=32  Identities=19%  Similarity=0.144  Sum_probs=29.6

Q ss_pred             eEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (210)
Q Consensus       155 tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~  186 (210)
                      -|.|||-|-+|..+|..|..-|.+|+.+++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            58999999999999999999999999999854

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=80.20  E-value=0.87  Score=31.69  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             cccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcCC
Q 028302          151 LLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRS  185 (210)
Q Consensus       151 l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~~  185 (210)
                      |.|+||++||=   +++.+..+..+.-||+++..+.|.
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~   39 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPE   39 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCG
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccc
Confidence            68999999995   789999999999999999999874

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.10  E-value=1.5  Score=29.75  Aligned_cols=38  Identities=26%  Similarity=0.352  Sum_probs=34.5

Q ss_pred             ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (210)
Q Consensus       150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~  187 (210)
                      --+||+|.|||-|+-+-.-|-.|..+--+|+.+-|+.+
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   68 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA   68 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccc
Confidence            35799999999999999999999999999999987654

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=80.10  E-value=2.2  Score=30.46  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=24.4

Q ss_pred             cCeEEEEe-cChHHHHHHHHhccC-CCEEEEE
Q 028302          153 GKTVFILG-FGNIGVELAKRLRPF-GVKIIAT  182 (210)
Q Consensus       153 ~~tvGIiG-~G~IG~~vA~~~~~f-g~~V~~~  182 (210)
                      ..+|||+| .|-.|+++.|+|... .+++.+.
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l   36 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVM   36 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEE
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEE
Confidence            45899999 899999999999854 4566555