Citrus Sinensis ID: 028303

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCCS
Secondary Structure (PSIPRED)
ccccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEcEEEEEEccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHccccHHcccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSYDYLFKYIIIGdtgvgksclllqftdkrfqpvhdltiGVEFGArmvtidgrpiklQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDArqhanpnmsIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALdavndsgikvgygrgqgpsgardgtvsqrggccs
Flexible Loop (DISEMBL)
MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRgqgpsgardgtvsqrggccs
Low Complexity Region (SEG)
MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCCS
Disordered region (IsUnstruct)
**YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR***********KENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGY**********************
Disordered Region (DISOPRED)
MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL************************************RGGCCS
Disordered Region (DISEMBL)
MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR*********FAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGR********************
Disordered Region (DISPRO)
*SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE*************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q38922	211	Ras-related protein RABB1	yes	no	0.995	0.990	0.9	1e-111
P92963	211	Ras-related protein RABB1	no	no	0.995	0.990	0.852	1e-104
P36863	213	GTP-binding protein yptV4	N/A	no	0.995	0.981	0.793	3e-96
Q39570	213	GTP-binding protein YPTC4	N/A	no	0.995	0.981	0.788	1e-95
P49104	210	Ras-related protein Rab-2	N/A	no	0.9	0.9	0.857	1e-94
P49103	209	Ras-related protein Rab-2	N/A	no	0.895	0.899	0.857	5e-94
O23561	205	Ras-related protein RABB1	no	no	0.966	0.990	0.719	9e-87
P53994	212	Ras-related protein Rab-2	yes	no	0.995	0.985	0.731	4e-86
Q01971	212	Ras-related protein Rab-2	yes	no	0.909	0.900	0.781	7e-86
Q05975	212	Ras-related protein Rab-2	N/A	no	0.890	0.882	0.797	7e-86

>sp|Q38922|RAB1B_ARATH Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1

 Score =  399 bits (1025), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/210 (90%), Positives = 201/210 (95%), Gaps = 1/210 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT+DGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAH+RAVSKEEG+QFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQ+G  D  N
Sbjct: 121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query: 181 D-SGIKVGYGRGQGPSGARDGTVSQRGGCC 209
           + SGIK+GYGR QG +G RDGT+SQ GGCC
Sbjct: 181 ESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|P92963|RAB1C_ARATH Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2 SV=1

 Score =  376 bits (965), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/210 (85%), Positives = 192/210 (91%), Gaps = 1/210 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAHRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAFIKTAA I + IQ+G  D  N
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 DS-GIKVGYGRGQGPSGARDGTVSQRGGCC 209
           +S GIKVGYG   GPSG RDG+ SQ GGCC
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P36863|YPTV4_VOLCA GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1

 Score =  350 bits (899), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 169/213 (79%), Positives = 184/213 (86%), Gaps = 4/213 (1%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ IDG+ IKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL HRRAV+ EEGEQFAKE+GL+FLE SARTA NVEEAFI TA +I + IQ+G  D  N
Sbjct: 121 CDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSN 180

Query: 181 DS-GIKVGYGRGQ-GPSGAR--DGTVSQRGGCC 209
           +S GIKVGYG G  GP  A+  +G   +   CC
Sbjct: 181 ESYGIKVGYGAGNAGPQAAKPGEGDARKSSSCC 213

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|Q39570|YPTC4_CHLRE GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1

 Score =  348 bits (893), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 168/213 (78%), Positives = 184/213 (86%), Gaps = 4/213 (1%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ IDG+ IKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL HRRAV+ EEGEQFAKE+GL+FLE SARTA NVEEAFI TA +I + IQ+G  D  N
Sbjct: 121 CDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSN 180

Query: 181 DS-GIKVGYGRGQ-GPSGAR--DGTVSQRGGCC 209
           +S GIKVGYG G  GP   +  +G  ++   CC
Sbjct: 181 ESYGIKVGYGGGNAGPQTVKPGEGGAAKSSSCC 213

Protein transport. Probably involved in vesicular traffic.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|P49104|RAB2B_MAIZE Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1

 Score =  345 bits (885), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 163/190 (85%), Positives = 176/190 (92%), Gaps = 1/190 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL+HRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAF+KTA  I + IQ+G  D  N
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 181 DS-GIKVGYG 189
           +S GIKVGY 
Sbjct: 181 ESYGIKVGYA 190

Protein transport. Probably involved in vesicular traffic.

Zea mays (taxid: 4577)

>sp|P49103|RAB2A_MAIZE Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1

 Score =  343 bits (880), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 162/189 (85%), Positives = 175/189 (92%), Gaps = 1/189 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ ID +PIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL+HRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAF+KTA  I + IQ+G  D  N
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 181 DS-GIKVGY 188
           +S GIKVGY
Sbjct: 181 ESYGIKVGY 189

Protein transport. Probably involved in vesicular traffic.

Zea mays (taxid: 4577)

>sp|O23561|RAB1A_ARATH Ras-related protein RABB1a OS=Arabidopsis thaliana GN=RABB1A PE=2 SV=1

 Score =  319 bits (817), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 151/210 (71%), Positives = 175/210 (83%), Gaps = 7/210 (3%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY Y FKYIIIGDTGVGKSCLLL+FTDKRFQ VHDLTIGVEFGA+ +TID +PIKLQIW
Sbjct: 1   MSYAYRFKYIIIGDTGVGKSCLLLKFTDKRFQAVHDLTIGVEFGAKTITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRS+TRSYYRG AG LLVYDITRRETFNHL+SWLE+ARQHA+ NM+ ML+GNK
Sbjct: 61  DTAGQESFRSVTRSYYRGRAGTLLVYDITRRETFNHLASWLEEARQHASENMTTMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL  +R VS EEGEQFA+E+GL+F+EASA+TA NVEEAF++TAA I + IQ+G +D  N
Sbjct: 121 CDLEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEEAFVETAATIYKRIQDGVVDEAN 180

Query: 181 DSGIKVGYGRGQGPSGARDGTVS-QRGGCC 209
           + GI        GP G +D + S QR GCC
Sbjct: 181 EPGIT------PGPFGGKDASSSQQRRGCC 204

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1

 Score =  317 bits (812), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 155/212 (73%), Positives = 175/212 (82%), Gaps = 3/212 (1%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct: 1   MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct: 121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query: 181 DS-GIKVG--YGRGQGPSGARDGTVSQRGGCC 209
           ++ GIK+G  +       G+  G     GGCC
Sbjct: 181 EANGIKIGPQHAATNASHGSNQGGQQAGGGCC 212

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Mus musculus (taxid: 10090)

>sp|Q01971|RAB2A_RABIT Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1

 Score =  316 bits (810), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 150/192 (78%), Positives = 168/192 (87%), Gaps = 1/192 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct: 1   MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct: 121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query: 181 DS-GIKVGYGRG 191
           ++ GIK+G   G
Sbjct: 181 EANGIKIGPQHG 192

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q05975|RAB2_LYMST Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1

 Score =  316 bits (810), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 150/188 (79%), Positives = 167/188 (88%), Gaps = 1/188 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I Q IQ+G  D  N
Sbjct: 121 SDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINN 180

Query: 181 DS-GIKVG 187
           ++ GIK+G
Sbjct: 181 EANGIKIG 188

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Lymnaea stagnalis (taxid: 6523)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
449455912	211	PREDICTED: ras-related protein RABB1b-li	0.995	0.990	0.947	1e-113
255570175	211	protein with unknown function [Ricinus c	1.0	0.995	0.924	1e-112
224102877	211	predicted protein [Populus trichocarpa]	1.0	0.995	0.933	1e-112
225452278	209	PREDICTED: ras-related protein RABB1b [V	0.990	0.995	0.933	1e-111
297798332	211	GTP-binding 2 [Arabidopsis lyrata subsp.	0.995	0.990	0.914	1e-110
356570243	211	PREDICTED: ras-related protein RABB1b-li	1.0	0.995	0.914	1e-110
15233367	211	GTP-binding protein GB2 [Arabidopsis tha	0.995	0.990	0.9	1e-109
363808076	211	uncharacterized protein LOC100797461 [Gl	1.0	0.995	0.900	1e-108
6624302	211	small GTP-binding protein [Carica papaya	0.995	0.990	0.9	1e-107
357496971	211	Small GTP-binding protein [Medicago trun	1.0	0.995	0.881	1e-107

>gi|449455912|ref|XP_004145694.1| PREDICTED: ras-related protein RABB1b-like [Cucumis sativus] gi|449492910|ref|XP_004159138.1| PREDICTED: ras-related protein RABB1b-like [Cucumis sativus]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/210 (94%), Positives = 202/210 (96%), Gaps = 1/210 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID RPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDARPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  D  N
Sbjct: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 181 D-SGIKVGYGRGQGPSGARDGTVSQRGGCC 209
           + SGIKVGYGR QGPSGARDGTV+QRGGCC
Sbjct: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCC 210

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570175|ref|XP_002526048.1| protein with unknown function [Ricinus communis] gi|223534629|gb|EEF36325.1| protein with unknown function [Ricinus communis]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/211 (92%), Positives = 202/211 (95%), Gaps = 1/211 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID RPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDSRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI+TA KILQNIQEG  D  N
Sbjct: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIRTAGKILQNIQEGVFDVSN 180

Query: 181 D-SGIKVGYGRGQGPSGARDGTVSQRGGCCS 210
           + SGIKVGYGR QGPSG+RDG V+QRGGCCS
Sbjct: 181 ESSGIKVGYGRPQGPSGSRDGAVAQRGGCCS 211

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102877|ref|XP_002312839.1| predicted protein [Populus trichocarpa] gi|118481778|gb|ABK92828.1| unknown [Populus trichocarpa] gi|222849247|gb|EEE86794.1| predicted protein [Populus trichocarpa]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/211 (93%), Positives = 201/211 (95%), Gaps = 1/211 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID RPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDARPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI TA KILQNIQEG  D  N
Sbjct: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIGTAGKILQNIQEGVFDVSN 180

Query: 181 D-SGIKVGYGRGQGPSGARDGTVSQRGGCCS 210
           + SGIKVGYGR QG SGARDGTV+QRGGCCS
Sbjct: 181 ESSGIKVGYGRPQGASGARDGTVAQRGGCCS 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452278|ref|XP_002270701.1| PREDICTED: ras-related protein RABB1b [Vitis vinifera] gi|296087576|emb|CBI34832.3| unnamed protein product [Vitis vinifera]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/211 (93%), Positives = 203/211 (96%), Gaps = 3/211 (1%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA+ILQNIQEG  D  N
Sbjct: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAARILQNIQEGVFDLSN 180

Query: 181 D-SGIKVGYGRGQGPSGARDGTVSQRGGCCS 210
           + SGIKVGYGR QGPSG  DGTVSQRGGCC+
Sbjct: 181 ESSGIKVGYGRPQGPSG--DGTVSQRGGCCN 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798332|ref|XP_002867050.1| GTP-binding 2 [Arabidopsis lyrata subsp. lyrata] gi|297312886|gb|EFH43309.1| GTP-binding 2 [Arabidopsis lyrata subsp. lyrata]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/210 (91%), Positives = 201/210 (95%), Gaps = 1/210 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT+DGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAH+RAVSKEEGEQFAKE+GLLFLEASARTAQNVEEAFIKTAAKILQNIQ+G  D  N
Sbjct: 121 CDLAHKRAVSKEEGEQFAKEHGLLFLEASARTAQNVEEAFIKTAAKILQNIQDGVFDVSN 180

Query: 181 D-SGIKVGYGRGQGPSGARDGTVSQRGGCC 209
           + SGIKVGYGR QG +G RDGT+SQ GGCC
Sbjct: 181 ESSGIKVGYGRTQGAAGGRDGTISQGGGCC 210

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570243|ref|XP_003553299.1| PREDICTED: ras-related protein RABB1b-like [Glycine max]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/211 (91%), Positives = 200/211 (94%), Gaps = 1/211 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID RPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDSRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL+SWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL+HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI+TA KILQNIQEG  D  N
Sbjct: 121 CDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIRTAGKILQNIQEGVFDVSN 180

Query: 181 DS-GIKVGYGRGQGPSGARDGTVSQRGGCCS 210
           +S GIKVGYGR QG  GARDGTVS RGGCCS
Sbjct: 181 ESFGIKVGYGRPQGQPGARDGTVSARGGCCS 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233367|ref|NP_195311.1| GTP-binding protein GB2 [Arabidopsis thaliana] gi|75281787|sp|Q38922.1|RAB1B_ARATH RecName: Full=Ras-related protein RABB1b; Short=AtRABB1b; AltName: Full=Ras-related protein GB2; Short=AtGB2; AltName: Full=Ras-related protein Rab2C; Short=AtRab2C gi|1184983|gb|AAA87883.1| ATGB2 [Arabidopsis thaliana] gi|3805852|emb|CAA21472.1| GTP-binding protein GB2 [Arabidopsis thaliana] gi|7270538|emb|CAB81495.1| GTP-binding protein GB2 [Arabidopsis thaliana] gi|17529056|gb|AAL38738.1| putative GTP-binding protein GB2 [Arabidopsis thaliana] gi|21436445|gb|AAM51423.1| putative GTP-binding protein GB2 [Arabidopsis thaliana] gi|21553875|gb|AAM62968.1| GTP-binding protein GB2 [Arabidopsis thaliana] gi|332661181|gb|AEE86581.1| GTP-binding protein GB2 [Arabidopsis thaliana]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/210 (90%), Positives = 201/210 (95%), Gaps = 1/210 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT+DGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAH+RAVSKEEG+QFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQ+G  D  N
Sbjct: 121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query: 181 D-SGIKVGYGRGQGPSGARDGTVSQRGGCC 209
           + SGIK+GYGR QG +G RDGT+SQ GGCC
Sbjct: 181 ESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808076|ref|NP_001241959.1| uncharacterized protein LOC100797461 [Glycine max] gi|255639407|gb|ACU19999.1| unknown [Glycine max]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/211 (90%), Positives = 200/211 (94%), Gaps = 1/211 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV+ID RPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVSIDSRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL+SWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL+HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI+TA KILQNI+EG  D  N
Sbjct: 121 CDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIRTAGKILQNIKEGVFDVSN 180

Query: 181 DS-GIKVGYGRGQGPSGARDGTVSQRGGCCS 210
           +S GIKVGYGR QG SGARDGTVS +GG CS
Sbjct: 181 ESFGIKVGYGRPQGQSGARDGTVSAKGGRCS 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6624302|dbj|BAA88497.1| small GTP-binding protein [Carica papaya]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/210 (90%), Positives = 198/210 (94%), Gaps = 1/210 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV IDGRPIKLQI 
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVAIDGRPIKLQIR 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            DL+HRRAVSKEEGEQFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQEG +D  N
Sbjct: 121 SDLSHRRAVSKEEGEQFAKEHGLLFLEASARTAQNVEEAFIRTAAKILQNIQEGVIDVSN 180

Query: 181 D-SGIKVGYGRGQGPSGARDGTVSQRGGCC 209
           + SGIK GYGR QG +GARDG V+QR GCC
Sbjct: 181 ESSGIKFGYGRPQGTAGARDGAVAQRSGCC 210

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496971|ref|XP_003618774.1| Small GTP-binding protein [Medicago truncatula] gi|355493789|gb|AES74992.1| Small GTP-binding protein [Medicago truncatula]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/211 (88%), Positives = 198/211 (93%), Gaps = 1/211 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID RPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMLTIDSRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+I L+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTITLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL+HRRAVSKEEGEQFAKENGLLF+EASA+TAQNVEEAFIKTAAKILQNIQ+G  D  N
Sbjct: 121 CDLSHRRAVSKEEGEQFAKENGLLFMEASAKTAQNVEEAFIKTAAKILQNIQDGVFDVSN 180

Query: 181 DS-GIKVGYGRGQGPSGARDGTVSQRGGCCS 210
           ++ GIKVGYGR QG +G RDGTV+  G CCS
Sbjct: 181 ETCGIKVGYGRPQGQAGGRDGTVAAGGACCS 211

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2125384	211	GB2 "GTP-binding 2" [Arabidops	0.995	0.990	0.9	1.3e-100
TAIR|locus:2130624	211	RABB1C "AT4G17170" [Arabidopsi	0.995	0.990	0.852	4.8e-94
MGI|MGI:1928750	212	Rab2a "RAB2A, member RAS oncog	0.995	0.985	0.731	7.6e-80
UNIPROTKB|Q01971	212	RAB2A "Ras-related protein Rab	0.995	0.985	0.731	9.7e-80
ZFIN|ZDB-GENE-011212-2	212	rab2a "RAB2A, member RAS oncog	0.995	0.985	0.731	1.2e-79
FB|FBgn0014009	213	Rab2 "Rab2" [Drosophila melano	0.995	0.981	0.741	2e-79
RGD|68323	212	Rab2a "RAB2A, member RAS oncog	0.995	0.985	0.726	2e-79
UNIPROTKB|G1K288	232	RAB2A "Ras-related protein Rab	0.995	0.900	0.726	4.2e-79
UNIPROTKB|P61105	212	RAB2A "Ras-related protein Rab	0.995	0.985	0.726	4.2e-79
UNIPROTKB|P61019	212	RAB2A "Ras-related protein Rab	0.995	0.985	0.726	4.2e-79

TAIR|locus:2125384 GB2 "GTP-binding 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
 Identities = 189/210 (90%), Positives = 201/210 (95%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT+DGRPIKLQIW
Sbjct:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
             CDLAH+RAVSKEEG+QFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQ+G  D  N
Sbjct:   121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query:   181 DS-GIKVGYGRGQGPSGARDGTVSQRGGCC 209
             +S GIK+GYGR QG +G RDGT+SQ GGCC
Sbjct:   181 ESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2130624 RABB1C "AT4G17170" [Arabidopsis thaliana (taxid:3702)]

 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 179/210 (85%), Positives = 192/210 (91%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIW
Sbjct:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
             CDLAHRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAFIKTAA I + IQ+G  D  N
Sbjct:   121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query:   181 DS-GIKVGYGRGQGPSGARDGTVSQRGGCC 209
             +S GIKVGYG   GPSG RDG+ SQ GGCC
Sbjct:   181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

MGI|MGI:1928750 Rab2a "RAB2A, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 155/212 (73%), Positives = 175/212 (82%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 DS-GIKVG--YGRGQGPSGARDGTVSQRGGCC 209
             ++ GIK+G  +       G+  G     GGCC
Sbjct:   181 EANGIKIGPQHAATNASHGSNQGGQQAGGGCC 212

GO:0000139 "Golgi membrane" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

UNIPROTKB|Q01971 RAB2A "Ras-related protein Rab-2A" [Oryctolagus cuniculus (taxid:9986)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 155/212 (73%), Positives = 174/212 (82%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 DS-GIKVG--YGRGQGPSGARDGTVSQRGGCC 209
             ++ GIK+G  +G          G     GGCC
Sbjct:   181 EANGIKIGPQHGATNATHAGNQGGQQAGGGCC 212

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

ZFIN|ZDB-GENE-011212-2 rab2a "RAB2A, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 155/212 (73%), Positives = 174/212 (82%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 DS-GIKVG--YGRGQGPSGARDGTVSQRGGCC 209
             ++ GIK+G  +       G   G     GGCC
Sbjct:   181 EANGIKIGPQHAATNSTMGGSQGGQQAGGGCC 212

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0014009 Rab2 "Rab2" [Drosophila melanogaster (taxid:7227)]

 Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
 Identities = 158/213 (74%), Positives = 175/213 (82%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQE+FRSITRSYYRGAAGALLVYDITRRETFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    61 DTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SARTA NVEEAFI TA +I + IQEG  D  N
Sbjct:   121 SDLDSRREVKKEEGEAFAREHGLVFMETSARTAANVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 DS-GIKVGYGRGQ-GPS--GARDGTVSQRGGCC 209
             ++ GIK+G       PS  GA     +   GCC
Sbjct:   181 EANGIKIGQQHSPTNPSLPGAGGAAGAANSGCC 213

GO:0003924 "GTPase activity" evidence=ISS;NAS

GO:0005525 "GTP binding" evidence=IEA;NAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

RGD|68323 Rab2a "RAB2A, member RAS oncogene family" [Rattus norvegicus (taxid:10116)]

 Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
 Identities = 154/212 (72%), Positives = 174/212 (82%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT+GVEFGARM+TIDG+ IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 DS-GIKVG--YGRGQGPSGARDGTVSQRGGCC 209
             ++ GIK+G  +       G   G     GGCC
Sbjct:   181 EANGIKIGPQHAATNASHGGNQGGQQAGGGCC 212

GO:0000139 "Golgi membrane" evidence=IDA

GO:0003924 "GTPase activity" evidence=IEA;ISO;ISS

GO:0005525 "GTP binding" evidence=IEA;ISO;ISS;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006184 "GTP catabolic process" evidence=ISO;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA;ISO;ISS

GO:0032482 "Rab protein signal transduction" evidence=IC

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IDA

UNIPROTKB|G1K288 RAB2A "Ras-related protein Rab-2A" [Canis lupus familiaris (taxid:9615)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 154/212 (72%), Positives = 173/212 (81%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct:    21 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 80

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    81 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 140

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct:   141 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 200

Query:   181 DS-GIKVG--YGRGQGPSGARDGTVSQRGGCC 209
             ++ GIK+G  +           G     GGCC
Sbjct:   201 EANGIKIGPQHAATNATHAGNQGGQQAGGGCC 232

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61105 RAB2A "Ras-related protein Rab-2A" [Canis lupus familiaris (taxid:9615)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 154/212 (72%), Positives = 173/212 (81%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 DS-GIKVG--YGRGQGPSGARDGTVSQRGGCC 209
             ++ GIK+G  +           G     GGCC
Sbjct:   181 EANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212

GO:0005525 "GTP binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61019 RAB2A "Ras-related protein Rab-2A" [Homo sapiens (taxid:9606)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 154/212 (72%), Positives = 173/212 (81%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 DS-GIKVG--YGRGQGPSGARDGTVSQRGGCC 209
             ++ GIK+G  +           G     GGCC
Sbjct:   181 EANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0019003 "GDP binding" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05975	RAB2_LYMST	No assigned EC number	0.7978	0.8904	0.8820	N/A	no
O23561	RAB1A_ARATH	No assigned EC number	0.7190	0.9666	0.9902	no	no
P61105	RAB2A_CANFA	No assigned EC number	0.7925	0.8904	0.8820	yes	no
P49104	RAB2B_MAIZE	No assigned EC number	0.8578	0.9	0.9	N/A	no
P49103	RAB2A_MAIZE	No assigned EC number	0.8571	0.8952	0.8995	N/A	no
P92963	RAB1C_ARATH	No assigned EC number	0.8523	0.9952	0.9905	no	no
Q39570	YPTC4_CHLRE	No assigned EC number	0.7887	0.9952	0.9812	N/A	no
P53994	RAB2A_MOUSE	No assigned EC number	0.7311	0.9952	0.9858	yes	no
P05712	RAB2A_RAT	No assigned EC number	0.7872	0.8904	0.8820	yes	no
Q38922	RAB1B_ARATH	No assigned EC number	0.9	0.9952	0.9905	yes	no
Q01971	RAB2A_RABIT	No assigned EC number	0.7812	0.9095	0.9009	yes	no
Q90965	RAB2A_CHICK	No assigned EC number	0.7925	0.8904	0.8820	yes	no
Q4R4X6	RAB2A_MACFA	No assigned EC number	0.7925	0.8904	0.8820	N/A	no
Q5R6B6	RAB2A_PONAB	No assigned EC number	0.7925	0.8904	0.8820	yes	no
P61019	RAB2A_HUMAN	No assigned EC number	0.7925	0.8904	0.8820	yes	no
Q8WUD1	RAB2B_HUMAN	No assigned EC number	0.7129	0.9952	0.9675	no	no
P17610	YPT3_SCHPO	No assigned EC number	0.5418	0.8523	0.8364	yes	no
P36863	YPTV4_VOLCA	No assigned EC number	0.7934	0.9952	0.9812	N/A	no
P59279	RAB2B_MOUSE	No assigned EC number	0.7037	0.9952	0.9675	no	no
P36409	RAB2A_DICDI	No assigned EC number	0.7190	0.9619	0.9758	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-152
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-129
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-103
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-95
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-93
pfam00071	162	pfam00071, Ras, Ras family	4e-92
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-87
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-81
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-81
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-77
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	1e-75
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	3e-72
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-71
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	3e-71
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-67
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	8e-63
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-60
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-59
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-56
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	4e-55
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	9e-55
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	7e-52
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-51
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-51
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	9e-50
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-48
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-48
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	3e-48
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	5e-48
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	5e-47
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-44
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-44
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-42
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	5e-42
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-39
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-39
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-37
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-37
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-36
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-36
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-36
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	4e-36
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-35
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	7e-35
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-34
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	4e-34
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-33
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	4e-33
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	9e-33
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	3e-32
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	6e-32
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-31
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	3e-31
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-30
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-30
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-30
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-30
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-28
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	8e-27
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	3e-26
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-25
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-25
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-25
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	3e-25
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-24
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	7e-24
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	4e-22
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	5e-22
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-21
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-21
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-19
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-19
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	2e-17
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-17
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-17
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	9e-17
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	5e-16
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	3e-15
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	3e-14
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	4e-14
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-13
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	1e-13
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-13
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-13
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-12
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-12
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	7e-10
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-09
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-09
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	1e-08
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-08
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	1e-06
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-06
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	2e-06
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-06
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	3e-06
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	4e-06
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	6e-06
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	1e-05
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	1e-05
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-05
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	3e-05
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	7e-05
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	8e-05
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	1e-04
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-04
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	3e-04
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	4e-04
cd00880	161	cd00880, Era_like, E	6e-04
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	6e-04
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	0.001

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  420 bits (1082), Expect = e-152
 Identities = 180/210 (85%), Positives = 192/210 (91%), Gaps = 1/210 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAHRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAFIKTAAKI + IQ+G  D  N
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSN 180

Query: 181 DS-GIKVGYGRGQGPSGARDGTVSQRGGCC 209
           +S GIKVGYG   G SG RDGT SQ GGCC
Sbjct: 181 ESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  360 bits (925), Expect = e-129
 Identities = 141/168 (83%), Positives = 153/168 (91%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH+N NM+IML+GNKCD
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           L  RR VS EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I   
Sbjct: 121 LESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  295 bits (758), Expect = e-103
 Identities = 99/164 (60%), Positives = 127/164 (77%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK I+IGD+GVGKS LL +FTD +F   +  TIGV+F  + + +DG+ +KLQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRSIT SYYRGA GALLVYDIT RE+F +L +WL++ R++A+PN+ IMLVGNK DL  +
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           R VS+EE E FA+E+GL F E SA+T  NVEEAF + A +IL+ 
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  274 bits (703), Expect = 2e-95
 Identities = 93/158 (58%), Positives = 121/158 (76%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK ++IGD+GVGK+ LLL+F D +F   +  TIGV+F ++ + +DG+ +KLQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRSIT SYYRGA GA+LVYD+T RE+F +L  WL + +++A PN+ I+LVGNK DL   
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164
           R VS EE +QFAKENGLLF E SA+T +NV+EAF   A
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  269 bits (689), Expect = 3e-93
 Identities = 114/166 (68%), Positives = 135/166 (81%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ ++G+ IKLQIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I L+GNK DL 
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            +R V+ EE +QFA ENGLLFLE SA+T +NVE+AF++TA KI QN
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  266 bits (682), Expect = 4e-92
 Identities = 89/162 (54%), Positives = 120/162 (74%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD GVGKS LL++FT  +F   +  TIGV+F  + + +DG+ +KLQIWDTAGQE 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
           FR++   YYRGA G LLVYDIT R++F ++  WLE+  +HA+ N+ I+LVGNKCDL  +R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 128 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            VS EEGE  AKE GL F+E SA+T +NVEEAF + A +IL+
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  254 bits (650), Expect = 3e-87
 Identities = 96/168 (57%), Positives = 119/168 (70%), Gaps = 4/168 (2%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           DYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + IDG+ IK QIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE +R+IT +YYRGA GALLVYDIT++ TF ++  WL++ R HA+ N+ IMLVGNK DL
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
            H RAV  EE + FA++NGL F+E SA    NVEEAF     ++L  I
Sbjct: 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAF----KQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  239 bits (612), Expect = 1e-81
 Identities = 102/161 (63%), Positives = 126/161 (78%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK++IIG  G GKSCLL QF + +F+   + TIGVEFG+R+V + G+ +KLQIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+TRSYYRGAAGALLVYDIT RE+FN L++WL DAR  A+P++ I+LVGNK DL   
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R V+  E  +FA+ENGLLFLE SA T +NVEEAF+K A  I
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  239 bits (611), Expect = 3e-81
 Identities = 93/167 (55%), Positives = 124/167 (74%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           DYLFK ++IGD+GVGKSCLLL+F++  F P    TIG++F  R + +DG+ IKLQIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FR+IT SYYRGA G +LVYDIT  ++F ++ +W+ +  +HA+ ++  MLVGNKCD+
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
             +R VSKEEGE  A+E G+ FLE SA+   NVEEAF+  A  IL+ 
Sbjct: 121 EEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  229 bits (586), Expect = 2e-77
 Identities = 87/166 (52%), Positives = 123/166 (74%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ +KLQIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCDL 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            ++ V   E ++FA E G+ FLE SA+ A NVEEAF+  A +I + 
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  226 bits (577), Expect = 1e-75
 Identities = 102/210 (48%), Positives = 137/210 (65%), Gaps = 5/210 (2%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTA 63
           Y F+ I+IGD+ VGKS LL +FT+ RF  V D T+GV+F +R++ I  G  IKLQ+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCD 122
           GQE FRSITRSYYR + G LLV+DIT RE+F H+  WLE+AR H  P+    +LVG+KCD
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND- 181
           L  +R V++EE E+ AK+ G+ ++E SART  NVEEAF     +I + I+ G L A++  
Sbjct: 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGW 180

Query: 182 SGIKVGYGRGQ--GPSGARDGTVSQRGGCC 209
            G+K G+  G+            S    CC
Sbjct: 181 DGVKSGFPAGRAFSLEERSPTFASPEKSCC 210

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  215 bits (551), Expect = 3e-72
 Identities = 76/162 (46%), Positives = 108/162 (66%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD+ VGKS ++L+F    F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +RS+   YYRGAA A++VYDIT  E+F    SW+++ ++H  PN+ I L GNK DL  +
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           R VS EE +++A ENGLLF+E SA+T +NV E F + A K+ 
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  214 bits (546), Expect = 2e-71
 Identities = 84/162 (51%), Positives = 119/162 (73%), Gaps = 2/162 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K ++IGD+GVGKS LLL+FTD  F      TIGV+F  + VT+DG+ +KL IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAH 125
            FR++T SYYRGA G +LVYD+TRR+TF++L +WL +   ++ NP+   MLVGNK D  +
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V++EEG++FA+++ +LF+E SA+T   V++AF +   KI
Sbjct: 121 -REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  215 bits (549), Expect = 3e-71
 Identities = 103/212 (48%), Positives = 142/212 (66%), Gaps = 9/212 (4%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R + ++G+ +K QIWDT
Sbjct: 9   YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R HA+ N+ IM+ GNK D
Sbjct: 69  AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSD 128

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL---DAV 179
           L H R+V++E+G+  A++ GL FLE SA  A NVE+AF     +I   I + AL   +A 
Sbjct: 129 LNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAA 188

Query: 180 NDSGIKVGYGRGQGPS-GARDGTVSQRGGCCS 210
            +SG+      GQG +    D + + + GCCS
Sbjct: 189 ANSGLP-----GQGTTINVADTSGNNKRGCCS 215

Length = 216

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  203 bits (519), Expect = 2e-67
 Identities = 78/162 (48%), Positives = 110/162 (67%), Gaps = 1/162 (0%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D+LFK I+IGD+ VGK+C++ +F    F      TIGV+F  + + I G+ +KLQIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FR+IT+SYYR A GA++ YDITRR +F  +  W+E+  ++   N+ ++L+GNKCDL
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 124 AHRRAVSKEEGEQFAKENGLLF-LEASARTAQNVEEAFIKTA 164
             +R V  EE    A+  G+L  LE SA+ + NVEEAF+  A
Sbjct: 121 EEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMA 162

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  192 bits (489), Expect = 8e-63
 Identities = 67/161 (41%), Positives = 107/161 (66%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K + +GD  VGK+ ++ +F    F   +  TIG++F ++ + +D + ++LQ+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R ++ A++VYDIT R++F++   W++D R     ++ I+LVGNK DL+ +
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKEN  +F+E SA+   NV++ F K A  +
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  186 bits (473), Expect = 2e-60
 Identities = 83/166 (50%), Positives = 112/166 (67%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD+LFK ++IG+ GVGK+CL+ +FT   F P    TIGV+F  + V I G  IKLQIWDT
Sbjct: 4   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDT 63

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+AN  +  +LVGNK D
Sbjct: 64  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKID 123

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           LA RR VS++  E+F+    + +LE SA+ + NVE+ F+  A +++
Sbjct: 124 LAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRLI 169

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  183 bits (467), Expect = 2e-59
 Identities = 71/172 (41%), Positives = 109/172 (63%), Gaps = 5/172 (2%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + VT+D R + LQIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKCD 122
            F+S+  ++YRGA   +LVYD+T  ++F  L SW ++    A+P    N   +++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 123 LAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQE 173
           L  +R VS ++ +Q+ K  G + + E SA+ A NV++AF   A   L+  +E
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  178 bits (452), Expect = 1e-56
 Identities = 100/215 (46%), Positives = 133/215 (61%), Gaps = 19/215 (8%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVTIDGRPIKLQI 59
            YD  FK ++IGD+GVGKS LL+ F       V DL  TIGV+F  + +T+ G+ +KL I
Sbjct: 10  GYDLSFKILLIGDSGVGKSSLLVSFIS---SSVEDLAPTIGVDFKIKQLTVGGKRLKLTI 66

Query: 60  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHA-NPNMSIMLV 117
           WDTAGQE FR++T SYYR A G +LVYD+TRRETF +LS  W ++   ++ N +   MLV
Sbjct: 67  WDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLV 126

Query: 118 GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ--NIQEGA 175
           GNK D    R VS+EEG   AKE+G LFLE SA+T +NVE+ F + A KI++  ++ E  
Sbjct: 127 GNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLLEEG 186

Query: 176 LDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCCS 210
             AV  + +K      Q P    +      GGCCS
Sbjct: 187 STAVKRNILK------QKP----EHQPPPNGGCCS 211

Length = 211

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  173 bits (440), Expect = 4e-55
 Identities = 76/162 (46%), Positives = 116/162 (71%), Gaps = 1/162 (0%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           FK +++GD+GVGK+CLL++F D  F       T+G++F  ++VT+DG  +KLQIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           E FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++ IML+GNK D++ 
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V +E+GE+ AKE G+ F+E SA+T  NVE AF   A ++
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  173 bits (439), Expect = 9e-55
 Identities = 79/166 (47%), Positives = 109/166 (65%), Gaps = 1/166 (0%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD+LFK +IIGD+GVGKS LLL+F D  F   +  TIGV+F  R V I+G  +KLQIWDT
Sbjct: 3   YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDT 62

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL++  Q+ + ++  +LVGNK D
Sbjct: 63  AGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKND 121

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
              R+ V  E+  +FA + G+   E SA+   NVEE F      +L
Sbjct: 122 DPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVL 167

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  164 bits (417), Expect = 7e-52
 Identities = 72/166 (43%), Positives = 100/166 (60%), Gaps = 5/166 (3%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R V IDG  IK+Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 67  SFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-SIMLVGNKCDLA 124
            FR S+ + YYR     + VYD+T   +F+ L SW+E+  QH+ PN    +LVGNKCDL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASAR---TAQNVEEAFIKTAAKI 167
            +  V  +  ++FA  + +   E SA+      +VE  F+  A K+
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  163 bits (414), Expect = 1e-51
 Identities = 71/164 (43%), Positives = 108/164 (65%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           F+ ++IGD+GVGK+CLL +FTD  F   H  TIGV+F  + + +DG  +++QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +++IT+ YYR A G  LVYDI+   ++ H+  W+ D  ++A   +  +L+GNK D   +
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           R V  E+G + AKE G+ F E SA T +N++E+F +    +LQ 
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLTELVLQA 164

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  163 bits (415), Expect = 1e-51
 Identities = 65/162 (40%), Positives = 103/162 (63%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G+  VGK+ L+L++ + +F   H+ T    F  + V I G+ I L IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + ++   YYR A GA+LVYDIT  ++F  +  W+++ +Q    N+S+++VGNK DL  +
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           R VSK E E++AK  G    E SA+T + +EE F+  A +++
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  160 bits (405), Expect = 9e-50
 Identities = 75/163 (46%), Positives = 111/163 (68%), Gaps = 1/163 (0%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           IIIG  GVGK+ L+ +FTD  F      T+GV+F  + V + G+ I+LQIWDTAGQE F 
Sbjct: 4   IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63

Query: 70  SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129
           SIT +YYR A G +LVYDIT++ETF+ L  W++   ++A+ +  ++LVGNK D    R +
Sbjct: 64  SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREI 123

Query: 130 SKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
           ++++GE+FA++  G+ F EASA+   NV+E F+K    IL+ +
Sbjct: 124 TRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  157 bits (399), Expect = 1e-48
 Identities = 67/175 (38%), Positives = 101/175 (57%), Gaps = 7/175 (4%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQ 65
           FK ++IGD GVGK+ ++ ++    F   +  TIGV+F  +++  D    ++LQ+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED--ARQHANPNMSI--MLVGNKC 121
           E F  +TR YY+GA GA++V+D+TR  TF  +  W  D  ++        I  +L+ NKC
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 122 DLAHRR-AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQEG 174
           DL   R A   E+ +QF KENG + + E SA+   N+EEA       IL+N +  
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGL 175

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  155 bits (395), Expect = 1e-48
 Identities = 66/161 (40%), Positives = 91/161 (56%), Gaps = 2/161 (1%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++G  GVGKS L ++F    F   +D TI   +  + + +DG    L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQ-IVVDGETYTLDILDTAGQEE 59

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHR 126
           F ++   Y R   G +LVY IT RE+F  + +  E   R     ++ I+LVGNKCDL + 
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE  A+E G  FLE SA+T  N++E F     +I
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  155 bits (392), Expect = 3e-48
 Identities = 69/155 (44%), Positives = 99/155 (63%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           +FK +IIG++ VGK+  L ++ D  F      T+G++F  + V  + + IKLQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           E +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKCD+  
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
            R VS E G Q A + G  F EASA+   NV++ F
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  155 bits (393), Expect = 5e-48
 Identities = 69/170 (40%), Positives = 107/170 (62%), Gaps = 15/170 (8%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF-GARMVTIDGRP------- 54
           YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F   R+V     P       
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 55  --IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
             + LQ+WDTAGQE FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA   N
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCEN 120

Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159
           P+  I+L+GNK DL  +R VS+ +  + A + G+ + E SA T QNVE+A
Sbjct: 121 PD--IVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKA 168

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  152 bits (385), Expect = 5e-47
 Identities = 54/158 (34%), Positives = 95/158 (60%), Gaps = 5/158 (3%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K I +G++GVGKSC++ ++ + RF   +  TIG+++G + V++  + +++  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-----NMSIMLVGNKCD 122
           +  +   +Y+   G LLVYD+T R++F  L SWL++ +Q   P     N+ +++  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L   RAVS++EG  +A+  G  + E SA T + V E F
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  146 bits (370), Expect = 1e-44
 Identities = 66/155 (42%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +   + + IDG    L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y R   G LLVY IT R++F  +  + E   R     ++ I+LVGNKCDL  
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
            R VS EEG++ A++ G  FLE SA+   NV+EAF
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF 154

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  145 bits (367), Expect = 2e-44
 Identities = 66/155 (42%), Positives = 92/155 (59%), Gaps = 2/155 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +   + + IDG    L I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y R   G LLVY IT R++F  ++ + E   R     ++ I+LVGNKCDL +
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
            R VS EEG++ A++ G  FLE SA+   NV+EAF
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAF 156

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  142 bits (360), Expect = 1e-42
 Identities = 69/176 (39%), Positives = 96/176 (54%), Gaps = 1/176 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            +   FK +++GD GVGK+ LL +     F   +  TIG    A+ +    R IKLQ+WD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNK 120
           TAGQE +RS+   YYRGA G L+VYD T RE +      WLE+ R+ A  ++ I+LVGNK
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176
            DL   ++ S+E   Q  +E  LL L   A   +    A ++T+AK L       L
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNEL 176

Length = 219

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  140 bits (353), Expect = 5e-42
 Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 1/167 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YDYL K++++GD+ VGK  +L    D   +  +   +G+++    + +DGR +KLQ+WD
Sbjct: 2   AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWD 61

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           T+GQ  F +I RSY RGA G +LVYDIT R +F+ +  W+++  +HA P +  +LVGN+ 
Sbjct: 62  TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRL 120

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
            LA +R V+ E+ + +A+ NG+ F E S     N+ E+F + A  +L
Sbjct: 121 HLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVL 167

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  133 bits (336), Expect = 1e-39
 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP--IKLQIWDTAGQ 65
           K I++G+  VGKS ++ +F    F   +  TIGV+F  + + +      ++L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           E F +IT++YYRGA   +LV+  T RE+F  + SW E        ++ ++LV  K DL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166
           +  ++ EE E  AK   L     S +   NV E F   A K
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  132 bits (333), Expect = 3e-39
 Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 2/155 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K I++G  GVGKS L LQF    F   ++ T    +  + V +DG  ++L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQLNILDTAGQE 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + +I  +Y+R   G LLV+ IT  E+F  L+ + E   R   + N+ ++LVGNKCDL  
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           +R VS EE    A++ G+ ++E SA+T  NV++ F
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  127 bits (320), Expect = 2e-37
 Identities = 57/155 (36%), Positives = 91/155 (58%), Gaps = 2/155 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  +   IDG+  +L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQE 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCDLAH 125
            F ++   Y R   G LLV+ +T R +F  +  +     +  + +   ++LVGNK DL H
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           +R VS+EEG++ A++  + ++E SA+   NV++AF
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAF 156

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  127 bits (321), Expect = 4e-37
 Identities = 65/171 (38%), Positives = 96/171 (56%), Gaps = 4/171 (2%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD GVGK+ L +Q     F   +D TI   +  ++V +DG+P  L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HANPNMSIMLVGNKCDLA 124
           + ++   + R   G +LVY IT R TF  +  + E  ++    +  ++ IM+VGNKCD  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 175
           + R VS EEG   A+  G  F+EASA+T  NVE AF      + Q  Q G 
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQ 170

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  125 bits (315), Expect = 2e-36
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 7   FKYIIIGDTGVGKSCLLLQFT-DKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
            K +I+GD  VGKS LL +   +K     +       +   ++  DG+  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 66  ESFRSITRSYYRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           E + +I R YYR    +L V+DI     +    L    ++   HA   + I+LVGNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
              + +       FAK NG   +  SA T +N++ AF
Sbjct: 122 RDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  125 bits (315), Expect = 2e-36
 Identities = 61/160 (38%), Positives = 88/160 (55%), Gaps = 6/160 (3%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE- 66
           K  ++G +GVGKS L ++F  KRF   ++  +   + +R VTIDG  + L+I DT GQ+ 
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 67  -SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDL 123
                      R A G +LVY IT R +F+ +S  L+  R+    +  + ++LVGNK DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASAR-TAQNVEEAFIK 162
            H R VS EEG++ A E G LF E SA      V+  F +
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHE 159

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  124 bits (314), Expect = 3e-36
 Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 16/173 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T  +F   +  T+   + A  VT+DG+ + L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSAN-VTVDGKQVNLGLWDTAGQEE 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
           +  +    Y      LL + +    +F ++ + W  + + +  PN+ I+LVG K DL   
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHY-CPNVPIILVGTKIDLRDD 119

Query: 124 --------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
                     ++ ++ EEGE+ AKE G + ++E SA T + ++E F   A + 
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF-DEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  124 bits (312), Expect = 4e-36
 Identities = 62/160 (38%), Positives = 97/160 (60%), Gaps = 6/160 (3%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++GD GVGKS L+ ++   +F      TIGVEF  + + +DG  + LQIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKC 121
           E FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 122 DLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
           D+  R+ VS EE + + ++NG   + E SA+ A NV  AF
Sbjct: 125 DIPERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 163

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  123 bits (309), Expect = 1e-35
 Identities = 58/130 (44%), Positives = 86/130 (66%)

Query: 38  TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL 97
           TIG++F ++ + +D  P++LQ+WDTAGQE FRS+  SY R +A A++VYDIT R++F + 
Sbjct: 12  TIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT 71

Query: 98  SSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157
           + W++D       ++ I LVGNK DL   R V+ EEG Q A+E   +F E SA+   N++
Sbjct: 72  TKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 131

Query: 158 EAFIKTAAKI 167
             F K AAK+
Sbjct: 132 VLFKKIAAKL 141

Length = 176

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  120 bits (304), Expect = 7e-35
 Identities = 62/162 (38%), Positives = 91/162 (56%), Gaps = 3/162 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I  R++F  + ++ E   R   + ++ ++LVGNKCDLA 
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R  VS  +G+  AK  G+ ++E SA+T Q VEEAF     +I
Sbjct: 121 RT-VSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  119 bits (300), Expect = 3e-34
 Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 2/163 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +F  + + +D  P  L+I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F S+   Y +   G ++VY +  ++TF  +    +   R      + I+LVGNK DL  
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
            R VS  EG   A+E G  F+E SA++   V E F +   ++ 
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQMN 163

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  119 bits (301), Expect = 4e-34
 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 8/163 (4%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           K +++G   VGK+ L+ ++   RF   P  + TIG  F A+ + +  R + L IWDTAG 
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQN-TIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           E + +++R YYRGA  A++ YD+T   +F     W+++ +     +  I L G K DL  
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN-LEEHCKIYLCGTKSDLIE 119

Query: 126 ----RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164
                R V   + + FA E      E S++T QNV+E F K A
Sbjct: 120 QDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA 162

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  118 bits (296), Expect = 1e-33
 Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 3/161 (1%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K I++GD  VGK+CL+ +F    F   +  TIGV+F      + G P  LQ+WDTAGQE 
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAHR 126
           F+ I  +YYRGA   ++V+D+T   +  H   WLEDA +  +P ++ + LVG K DL+  
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 127 RAVSKEEGE--QFAKENGLLFLEASARTAQNVEEAFIKTAA 165
              +  E +  + A+E    +   SA T +NV + F + A+
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVAS 162

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  117 bits (294), Expect = 4e-33
 Identities = 65/168 (38%), Positives = 93/168 (55%), Gaps = 2/168 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  +   ID     L I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQE 64

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L VY IT R +F  ++S+ E   R      + ++LVGNKCDL  
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
            R VS  EG++ AK  G+ FLE SA+   NV+EAF +   +I + ++E
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKE 172

Length = 189

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  115 bits (291), Expect = 9e-33
 Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 4/155 (2%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K  ++G   VGKS L +QF +  F   +  TI   F ++++T  G+   L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA--RQHANPNMSIMLVGNKCDLAH 125
           +  + + Y  G  G +LVY +T R++F  +   + D         ++ I+LVGNK DL  
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKV-IYDKILDMLGKESVPIVLVGNKSDLHM 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
            R VS EEG++ A+  G  FLE+SA+  +NVEEAF
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  115 bits (290), Expect = 3e-32
 Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 4/166 (2%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-PIKLQIWDTAGQ 65
            K +++GD   GK+ L+ +F  + F   +  TIG++F +R +T+ G   + LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE---DARQHANPNMSIMLVGNKCD 122
           +    +   Y  GA    LVYDIT  ++F +L  WL       + +     ++LVGNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           L H R V+ E+  +FA+EN +  +  SA+T   V   F + AA++L
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELL 166

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  113 bits (284), Expect = 6e-32
 Identities = 63/164 (38%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + V IDGR   L+I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G LLVY +T   + N L    E   R   + N+ ++LVGNK DL  
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 126 RRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 168
            R VS+E+G   +++ G + F E SAR   NV+E FI    +I+
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  112 bits (281), Expect = 2e-31
 Identities = 63/162 (38%), Positives = 89/162 (54%), Gaps = 2/162 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + V +DG+   L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G +LVY IT + TFN L    E   R     ++ ++LVGNKCDL  
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V KE+G+  A++ G  FLE SA+   NV E F     +I
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  111 bits (281), Expect = 3e-31
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 19/172 (11%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P++L +WDTAGQE + 
Sbjct: 2   VVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSAD-VEVDGKPVELGLWDTAGQEDYD 60

Query: 70  SITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRRA 128
            +    Y      L+ + +    +F ++   W  + +    PN+ I+LVG K DL + ++
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNVPIILVGTKLDLRNDKS 119

Query: 129 ------------VSKEEGEQFAKENGLL-FLEASARTAQNVEEAF---IKTA 164
                       V+ E+G+  AK  G + +LE SA T + V E F   I+ A
Sbjct: 120 TLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  109 bits (275), Expect = 1e-30
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 7/162 (4%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K I++GD+ VGKS L+ +F    ++P    T  +         +G+ I +  WDTAGQE 
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
           F+++  SYY  A   +LV+D+TR+ T+ +LS W E+ R++  P +  ++V NK DL    
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPSV 120

Query: 128 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAF---IKTAAK 166
               ++   FA+++ L     SA    NV + F   IK A  
Sbjct: 121 T---QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  109 bits (275), Expect = 2e-30
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE        +   I+  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY     A++++D+T R T+ ++ +W  D       N+ I+L GNK D+  R
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 119

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
           +   K +   F ++  L + E SA++  N E+ F+  A K+L N 
Sbjct: 120 K--VKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNP 162

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  109 bits (274), Expect = 2e-30
 Identities = 62/163 (38%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +   + + +D +   L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G  LVY IT +++FN L    E   R     ++ ++LVGNKCDL  
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 126 RRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
            R VSKEEG+  A++ G   FLE SA++  NV+E F     +I
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  109 bits (274), Expect = 2e-30
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 5/163 (3%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTI--DGRPIKLQIWDTA 63
           +  ++GD  VGKS L+  F      FQ  + +T G +   + V +      ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCD 122
           GQE F  +  + +   A   +VYD+T   +FN+ S W+   R H++   +  +LVGNKCD
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165
           L  RR V   + +  A+ N L F E SA+     E  F+  A 
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  104 bits (261), Expect = 2e-28
 Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 2/171 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS + +QF    F   HD TI   +  +   ID  P  L I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQA 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y R   G ++ Y +T R +F   S + E   R     ++ ++LVGNK DL  
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQ 121

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176
           +R V+ EEG   A+E    F E SA     +++AF     +I +     AL
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKESMPAL 172

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  100 bits (250), Expect = 8e-27
 Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 15/160 (9%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDL---TIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           ++G  GVGKS LL          V D+   T   +    +  +D   +KL + DT G + 
Sbjct: 2   VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVY--VKELDKGKVKLVLVDTPGLDE 59

Query: 68  F-----RSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKC 121
           F       + R   RGA   LLV D T RE+  +     L   R+   P   I+LVGNK 
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP---IILVGNKI 116

Query: 122 DL-AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           DL   R        E+ AK  G+   E SA+T + V+E F
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELF 156

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  100 bits (250), Expect = 3e-26
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK I++GD GVGK+  + +     F+  +  T+GVE        +  PI   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+LVGNK D+  R
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVKDR 128

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           +   K     F ++  L + + SA++  N E+ F+  A ++  +
Sbjct: 129 QV--KARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTND 170

Length = 215

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 98.6 bits (246), Expect = 1e-25
 Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 7/158 (4%)

Query: 7   FKYIIIGDTGVGKSCLLLQF-TDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           ++ +++GD+GVGKS L   F         ++   G +   R V++DG    L ++D   Q
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEA-SGDDTYERTVSVDGEEATLVVYDHWEQ 59

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCD 122
           E    +  S  +     ++VY +T R +F   + L   L  ARQ    ++ I+LVGNK D
Sbjct: 60  EDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQA--EDIPIILVGNKSD 117

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L   R VS +EG   A      F+E SA    NV+E F
Sbjct: 118 LVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELF 155

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 97.2 bits (242), Expect = 1e-25
 Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           ++ ++ G  GVGKS L+L+F    F+  +  TI   +  ++++       LQI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKSICTLQITDTTGSH 60

Query: 67  SFRSITR-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HANPNMSIMLVGNKCD 122
            F ++ R S  +G A  +LVY IT +++   L    E   +   +    + IMLVGNKCD
Sbjct: 61  QFPAMQRLSISKGHA-FILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCD 119

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
            +  R VS  EG   A+     F+E SA+T  NV+E F
Sbjct: 120 ESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 98.3 bits (245), Expect = 2e-25
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +   I+   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR 132

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           +   K +   F ++  L + E SA++  N E+ F+  A K+  +
Sbjct: 133 QV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174

Length = 219

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 97.0 bits (242), Expect = 3e-25
 Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 22/184 (11%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI---DGRPIKLQIW 60
           D   K +++GD G GK+CLL+ +    F   +  T+   F   + T+   +G+ I+L +W
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV---FENYVTTLQVPNGKIIELALW 57

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGN 119
           DTAGQE +  +    Y      L+ Y +    +  N    W  +   H  P   I+LVG 
Sbjct: 58  DTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCPGTPIVLVGL 116

Query: 120 KCDL-AHRRAVSK-----------EEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAK 166
           K DL   + +VSK           E+GE  AK    + ++E SA+  +NV+E F   A  
Sbjct: 117 KTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF-DAAIN 175

Query: 167 ILQN 170
           +  +
Sbjct: 176 VALS 179

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 94.4 bits (235), Expect = 2e-24
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 16/167 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+ L++ +T   +   +  T    F    V +DG+P++LQ+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
           F  +    Y      LL + +    +F ++S  W+ + R+H NP   I+LVG + DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTD 119

Query: 124 ---------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
                       + VS+   +  A++ G   ++E SA T +N++E F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 93.0 bits (231), Expect = 7e-24
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 15/172 (8%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K + +GD  VGK+C+L+ +T   F   +  T+   F A  V +DG  + L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGNTVNLGLWDTAGQED 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
           +  +    YRGA   LL + +  + ++ N L  W+ + R +A P + I+LVG K DL   
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA-PGVPIVLVGTKLDLRDD 120

Query: 127 R----------AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI 167
           +           ++  +GE+  K+ G   ++E S++T QNV+  F   A K+
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF-DAAIKV 171

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 88.9 bits (220), Expect = 4e-22
 Identities = 50/170 (29%), Positives = 91/170 (53%), Gaps = 5/170 (2%)

Query: 12  IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71
           +GD G GK+  + +     F+  +  T+GVE    +   +  PI+  +WDTAGQE F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 72  TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 131
              YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R+  +K
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKDRKVKAK 119

Query: 132 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
                F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 120 S--ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 167

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 87.9 bits (218), Expect = 5e-22
 Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 16/167 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQED 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCD---- 122
           +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K D    
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 120

Query: 123 ------LAHRR--AVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                 L  ++   ++  +G   AKE   + +LE SA T + ++  F
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 87.6 bits (217), Expect = 1e-21
 Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 12/171 (7%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD   GK+ LL  FT   F  V++ T+  E     + +DG  ++L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDL--- 123
           F  +    Y      +L + +   ++  N  S WL + R H  P + ++LV  KCDL   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC-PGVKLVLVALKCDLREP 119

Query: 124 -----AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKIL 168
                     +S EEG   AK  N   +LE SA+  + V EAF + A   L
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVAL 170

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 87.1 bits (216), Expect = 1e-21
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 16/168 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAH- 125
           +  +    Y      L+ + I   ++  N    W  + + H  PN+ I+LVGNK DL + 
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 126 -----------RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFI 161
                      +  V  EEG   A++     +LE SA+T + V E F 
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFE 168

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 83.0 bits (205), Expect = 1e-19
 Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 38/186 (20%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+ LL ++ ++RF+     T+G  F  +       P  + IWDTAG+E 
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK----QWGPYNISIWDTAGREQ 56

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           F  +   Y RGAA  +L YD++  ++   L          AN +    +VGNK DL    
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 126 -----------------RRAVSKEEGEQFAKE----NGL----------LFLEASARTAQ 154
                            +R V+ E+ + F K       L          +  E SA+T  
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176

Query: 155 NVEEAF 160
           NV+E F
Sbjct: 177 NVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 80.1 bits (198), Expect = 1e-19
 Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K ++IGD G GKS LL Q     F P      G       + +DG    L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS---WLEDARQHANPNMSIMLVGNKC 121
            +     + + A   LLVYD+T RE+ N +S    WL + R+     + ++LVGNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRK-LGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T   F   +  T+   + A+   +DGR + L +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQT-AVDGRTVSLNLWDTAGQEE 63

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
           +  +    Y      ++ + I    ++ N    W  +   H  PN+ I+LVG K DL + 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRND 122

Query: 127 RAVSK------------EEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 168
               K            ++G   AK+   + +LE SA     V+E F +    +L
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 75.9 bits (187), Expect = 2e-17
 Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 17/168 (10%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    +D + I+L +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTAS-FEVDKQRIELSLWDTSGSPY 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCD---- 122
           + ++    Y  +   L+ +DI+R ET  + L  W  + R+   PN  ++LVG K D    
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSDLRTD 120

Query: 123 ------LAHRRA--VSKEEGEQFAKENG-LLFLEASARTAQN-VEEAF 160
                 L+++R   VS E+G   AK+ G   ++E SA+T++N V + F
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF 168

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 75.9 bits (187), Expect = 2e-17
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K  ++GD  +GK+ L++++ +  F   +  T+GV F  + ++I G  I   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           F ++     + A   L ++D+TR+ T N +  W   AR      + I LVG K DL
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI-LVGTKYDL 116

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 74.5 bits (183), Expect = 9e-17
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+ LL  FT   F   +  T+   +      +DG+P++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRVDGKPVQLALWDTAGQEE 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
           +  +    Y  A   L+ + I   ++  ++ + W+E+ R++  PN+ ++LVG K DL   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQE 120

Query: 124 -------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
                  A    V  ++ +  A+  G   ++E SA T + V++ F
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 72.2 bits (177), Expect = 5e-16
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDL--- 123
           +  +    Y      L+ + +    +F N    W+ +   H  P    +LVG + DL   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 120

Query: 124 ---------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
                      ++ ++ E GE+ A++   + ++E SA T + ++  F
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 69.7 bits (171), Expect = 3e-15
 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA-RMVTIDGRPIKLQIWDTAGQE 66
           K +++G  GVGK+ L  Q   ++F      T G+     ++   + + I+L +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 67  SFRSI------TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
            + +       +RS Y      LLV+D+   +  + +  WL   +        ++LVG  
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQIKAFG-GVSPVILVGTH 115

Query: 121 CDLAHRRAVSKEE-GEQF-AKENGLLFLEASARTAQNVEE 158
            D +    + K+   ++F A  N       S +  + + E
Sbjct: 116 IDESCDEDILKKALNKKFPAIIND--IHFVSCKNGKGIAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 67.3 bits (164), Expect = 3e-14
 Identities = 44/168 (26%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ + +  F   +  T+   + A  VT+ G+   L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQE 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ + +++A PN+  +L+G + DL  
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPYLLIGTQIDLRD 118

Query: 124 ----------AHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAF 160
                        + ++ E+G++ AKE G   ++E SA T + ++  F
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVF 166

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 66.4 bits (163), Expect = 4e-14
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 23/162 (14%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--VEFGARMVTIDGRPIKLQIWDTAGQES 67
           +++G  G GK+ +L +            TIG  VE      T++ + +K  +WD  GQ+ 
Sbjct: 3   LMLGLDGAGKTTILYKLKLGEVVTTIP-TIGFNVE------TVEYKNVKFTVWDVGGQDK 55

Query: 68  FRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
            R + + YY    G + V D + R    E  N L   L +          ++++ NK DL
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEE---LKGAPLLILANKQDL 112

Query: 124 AHRRAVSKEEGEQFAKENGLL-----FLEASARTAQNVEEAF 160
               A+++ E  +      +          SA T   ++E  
Sbjct: 113 PG--ALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 7/157 (4%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           + + +G  GVGK+ L+ +F    F+P H  T+  E  ++   + G  + + I DT+G  S
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHR 126
           F ++ +   +      LVY +   E+F  +    E+  +   +  + I++VGNK D    
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 127 RAVSKEEGEQFAK---ENGLLFLEASARTAQNVEEAF 160
           R V   +     +    NG  F+EASA+  +NV E F
Sbjct: 120 RQVEAADALSTVELDWNNG--FVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 66.6 bits (162), Expect = 1e-13
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 16/175 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GDT  GK+ LL  F    +   +  T+   + A    ID   I+L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASF-EIDKHRIELNMWDTSGSSY 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK----CDL 123
           + ++    Y  +   L+ +DI+R ET + +    +   Q   PN  ++LVG K     DL
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDL 121

Query: 124 AHRRAVSK--------EEGEQFAKENGLL-FLEASARTAQN-VEEAF-IKTAAKI 167
           +  R +SK        E+G   A++ G + ++E S+R ++N V + F + T A +
Sbjct: 122 STLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASV 176

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 65.5 bits (159), Expect = 2e-13
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 16/162 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 65

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLA-- 124
           + ++    Y  +   L+ +DI+R ET  + L  W  + ++   PN  ++LVG K DL   
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 124

Query: 125 ---------HRRA-VSKEEGEQFAKENGLL-FLEASARTAQN 155
                    HR+  VS ++G   AK+ G   ++E SA  ++N
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 11/164 (6%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           ++ +++G + VGK+ ++ +F   RF+  +  TI  +F  ++ +I G   +L I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---------HANPNMSIMLV 117
            F ++ R         +LV+ +  RE+F  +    E   +           N  + +++ 
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 118 GNKCDLAHRRAVSKEEGEQF-AKENGLLFLEASARTAQNVEEAF 160
           GNK D    R V ++E EQ    +    + E SA+   N++E F
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 63.9 bits (155), Expect = 2e-12
 Identities = 46/177 (25%), Positives = 87/177 (49%), Gaps = 16/177 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD   GK+ +L       +   +  T+   + A + T + R ++L +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 73

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD---- 122
           + ++    Y  +   LL +DI+R E F+  L  W  +   +  P+  I+L+G K D    
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC-PSTRILLIGCKTDLRTD 132

Query: 123 ------LAHRRA--VSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN 170
                 L++++   +S E+G   AK+ G   +LE SA T++    +  +TA+ +  N
Sbjct: 133 LSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCIN 189

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 32/168 (19%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRF----QPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           ++IGD GVGKS L++    + F      V  ++TI  +     VT +  P    I DT+ 
Sbjct: 6   VLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPAD-----VTPERVPTT--IVDTSS 58

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL 123
           +   R+   +  R A    LVY + R  T   + + WL   R+     + I+LVGNK DL
Sbjct: 59  RPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDL 117

Query: 124 AHRRAVSKEEGEQFAKENGLLF-----------LEASARTAQNVEEAF 160
                  ++   Q   E  +L            +E SA+T  NV E F
Sbjct: 118 -------RDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 48/164 (29%), Positives = 69/164 (42%), Gaps = 19/164 (11%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL--------TIGVEFGARMVTIDGRPIKLQIWD 61
           +I+G    GK+  L Q T  +F   +          T+G+  G    TI+    +L  WD
Sbjct: 3   LILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIG----TIEVGKARLMFWD 57

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNK 120
             GQE  RS+   YY  + G + V D T RE FN   S  E      A   + ++++ NK
Sbjct: 58  LGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANK 117

Query: 121 CDLAHRRAVS--KEEGEQFAKENG---LLFLEASARTAQNVEEA 159
            DL    +V+  KE  +      G    L    SA   + VEE 
Sbjct: 118 QDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 18/137 (13%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD--------- 61
           ++G  GVGK+ ++ QF  + F   +  T         V + GR   L I D         
Sbjct: 5   VLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG 64

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNH---LSSWLEDARQHANPNMSIMLVG 118
           TAGQE      R   R +   +LVYDI   ++F++   L   + + R   N    I++VG
Sbjct: 65  TAGQEWMDPRFRG-LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVG 123

Query: 119 NKCDL-----AHRRAVS 130
           NK D      A R  +S
Sbjct: 124 NKRDQQRHRFAPRHVLS 140

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K II+G    GK+ +L QF          +      G+ +  I  + I+  +WD  GQE
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLG-----EVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQE 70

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDL 123
           S RS   +YY      +LV D T RE        L     H +   +++LV  NK DL
Sbjct: 71  SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 40/191 (20%)

Query: 6   LFKYIIIGDTGVGKSCLLL------QFTDKRFQPVHDLTI----------GVEFGARMVT 49
             K +++GD  VGK+ L+         T  +    H  T+           V   +R V 
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDV- 60

Query: 50  IDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHA 108
           +DG  + L++WDT G        R  Y  +   LL + I    +  ++ + W  + R   
Sbjct: 61  VDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC 118

Query: 109 NPNMSIMLVGNKCDLAH-------------------RRAVSKEEGEQFAKENGLLFLEAS 149
            P + ++LVG K DL +                      +  E G   AKE G+ + E S
Sbjct: 119 -PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETS 177

Query: 150 ARTAQNVEEAF 160
             T   V++ F
Sbjct: 178 VVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 14/131 (10%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +I+G    GK+ +L +            TIG  F    VT     +K  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIV-TTIPTIG--FNVETVTYKN--VKFTVWDVGGQE 69

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
           S R + R+Y+      + V D   R+        L + L +       +  ++++ NK D
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEE---LADAPLLILANKQD 126

Query: 123 LAHRRAVSKEE 133
           L    A+S+ E
Sbjct: 127 L--PGAMSEAE 135

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 38/138 (27%), Positives = 54/138 (39%), Gaps = 30/138 (21%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKR---FQPVH-----DLTIGVEFGARMVTIDGRPIKLQI 59
           K + +G    GK+ LL    D R     P       +LTIG              +K   
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIG-------------NVKFTT 67

Query: 60  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETF----NHLSSWLEDARQHANPNMSIM 115
           +D  G E  R + + Y+    G + + D    E F      L S L D       N+ I+
Sbjct: 68  FDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLND---EELANVPIL 124

Query: 116 LVGNKCDLAHRRAVSKEE 133
           ++GNK D     AVS+EE
Sbjct: 125 ILGNKIDK--PGAVSEEE 140

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 10/128 (7%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           + + +G  G GK+ +L +     F QP+  +   VE      T++ + +K  IWD  G+ 
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE------TVEYKNLKFTIWDVGGKH 54

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + + YY      + V D + R+  +   S L           +++L+  NK D+A 
Sbjct: 55  KLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114

Query: 126 RRAVSKEE 133
             A+S EE
Sbjct: 115 --ALSVEE 120

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 28/146 (19%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-----DGRPIKLQIWDT 62
           K +++GD+GVGKS L+      +       T+G     R  T      + +   +++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 63  AGQ----ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW-LE--------------- 102
            G     ES +S    +Y    G + V+D+T +++  +L  W LE               
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTN 121

Query: 103 ---DARQHANPNMSIMLVGNKCDLAH 125
              D+ Q A   + ++++G K D   
Sbjct: 122 GDYDSEQFAGNPVPLLVIGTKLDQIP 147

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 13/127 (10%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70
           ++G    GK+ L+      +F    D    V F  R VT     IK  +WD  GQ  FRS
Sbjct: 4   LVGLQNSGKTTLVNVIASGQF--SEDTIPTVGFNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 71  ITRSYYRGAAGALLVYDITRRETF----NHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
           +   Y RG    + V D   RE      N L   LE       P   ++++GNK DL   
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIP---LLVLGNKNDLPG- 115

Query: 127 RAVSKEE 133
            A+S +E
Sbjct: 116 -ALSVDE 121

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 21/181 (11%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTI---DGRPIKLQIWDTAGQ 65
           +++G    GK+ +L +     F  V+ + T G  F    + +   + + +    WD  GQ
Sbjct: 7   VMLGLDSAGKTTVLYRLKFNEF--VNTVPTKG--FNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLA 124
           E  R + +SY R   G + V D    E      + L    +   N  + ++++ NK DL 
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDL- 121

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDSGI 184
              A+   E E+      L   E S+ T  +V+       A I + +QEG L+ + +  +
Sbjct: 122 -PNALPVSEVEKL-----LALHELSSSTPWHVQ----PACAIIGEGLQEG-LEKLYEMIL 170

Query: 185 K 185
           K
Sbjct: 171 K 171

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 20/174 (11%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDK----RFQPVHDL--------TIGVEFGARMVTIDGRPI 55
           K ++IG  G GK+  +   +DK           +        T+ ++FG+  + +D    
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IELDED-T 68

Query: 56  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM 115
            + ++ T GQE F+ +     RGA GA+++ D +R  TF+             NP + ++
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFL--TSRNP-IPVV 125

Query: 116 LVGNKCDLAHRRAVSKEEGEQFAKENGLLF-LEASARTAQNVEEAFIKTAAKIL 168
           +  NK DL       K   E    E   +  +E  A   +   +       K L
Sbjct: 126 VAINKQDLFDALPPEK-IREALKLELLSVPVIEIDATEGEGARDQLDVLLLKDL 178

Length = 187

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 29/170 (17%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAGQESF 68
           +++G    GKS LL +   K  + V  + T+G  F   M+ ++   + L +WD  GQE  
Sbjct: 3   LLLGLDSAGKSTLLYKL--KHAELVTTIPTVG--FNVEMLQLEKH-LSLTVWDVGGQEKM 57

Query: 69  RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR---QHA--NPNMS---IMLVGNK 120
           R++ + Y     G + V D +           L++++   +H   N ++    ++L+ NK
Sbjct: 58  RTVWKCYLENTDGLVYVVDSSDEAR-------LDESQKELKHILKNEHIKGVPVVLLANK 110

Query: 121 CDLAHRRAVSKEE-GEQFAKE----NGLLFLEA-SARTAQNVEEAFIKTA 164
            DL    A++ EE   +F  +    +   +++  SA T + + EAF K A
Sbjct: 111 QDLPG--ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 39/179 (21%), Positives = 59/179 (32%), Gaps = 32/179 (17%)

Query: 10  IIIGDTGVGKSCLL--LQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG--Q 65
            ++G   VGKS LL  L             T+    G   V   G  + +QI D  G   
Sbjct: 1   GLVGLPNVGKSTLLSALTSAKVEIASYPFTTLEPNVG---VFEFGDGVDIQIIDLPGLLD 57

Query: 66  ESF------RSITRSYYRGAAGALLVYDITRRETFNHL----------SSWLEDARQHAN 109
            +         I    YR     L V D +     + L          S      +    
Sbjct: 58  GASEGRGLGEQILAHLYRSDL-ILHVIDASEDCVGDPLEDQKTLNEEVSGSFLFLK---- 112

Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
            N   M+V NK D+A    +     +    + G+  +  SA T   ++   I+T  K+L
Sbjct: 113 -NKPEMIVANKIDMASENNLK--RLKLDKLKRGIPVVPTSALTRLGLDRV-IRTIRKLL 167

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 44/192 (22%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRPIKLQIW 60
            K +IIG   VGKS LL     +    V D+       I        + ++G P++L   
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEE-----DINLNGIPVRLV-- 270

Query: 61  DTAG-------------QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH 107
           DTAG             + + ++I       A   L V D ++      L        + 
Sbjct: 271 DTAGIRETDDVVERIGIERAKKAI-----EEADLVLFVLDASQ-----PLDKEDLALIEL 320

Query: 108 ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE---EAFIKTA 164
                 I++V NK DL     VSK E E     NG   +  SA+T + ++   EA  +  
Sbjct: 321 LPKKKPIIVVLNKADL-----VSKIELESEKLANGDAIISISAKTGEGLDALREAIKQLF 375

Query: 165 AKILQNIQEGAL 176
            K L N +   L
Sbjct: 376 GKGLGNQEGLFL 387

Length = 454

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           + +++G    GK+ +L +   K  + V  + TIG      + T+  + I   +WD  GQ+
Sbjct: 15  RILMVGLDAAGKTTILYKL--KLGESVTTIPTIGFN----VETVTYKNISFTVWDVGGQD 68

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDL 123
             R + R YY    G + V D   R+  +     L           +++LV  NK DL
Sbjct: 69  KIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 37/169 (21%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT----------IDG---RPIK 56
           +++GD+GVGKS L+              TIG   G + +T          I G   R   
Sbjct: 25  LVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFF 84

Query: 57  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN------P 110
           +++WD +G E ++     +Y    G + V+D+++R T   L  W   A + A       P
Sbjct: 85  VELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKW---ASEVAATGTFSAP 141

Query: 111 NMS---------IMLVGNKCDLAHRRAVSKEEG------EQFAKENGLL 144
             S          +++GNK D+A +       G       Q+ ++ GLL
Sbjct: 142 LGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190

Length = 334

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 17/126 (13%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           +++G  G GK+ LL   + +R       T G       V I  +   +++ +  G ++ R
Sbjct: 3   LVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN----SVAIPTQDAIMELLEIGGSQNLR 58

Query: 70  SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH------ANPNMSIMLVGNKCDL 123
              + Y  G+ G + V D    E        L  ARQ         P++ ++++ NK DL
Sbjct: 59  KYWKRYLSGSQGLIFVVDSADSER-------LPLARQELHQLLQHPPDLPLVVLANKQDL 111

Query: 124 AHRRAV 129
              R+V
Sbjct: 112 PAARSV 117

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 14/128 (10%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           +++G    GK+ +L Q   +    +   T G  F  + V  DG   KL +WD  GQ   R
Sbjct: 19  LLLGLDNAGKTTILKQLASEDISHITP-TQG--FNIKNVQADG--FKLNVWDIGGQRKIR 73

Query: 70  SITRSYYRGAAGALLVYDITRRETFNH----LSSWLEDARQHANPNMSIMLVGNKCDLAH 125
              R+Y+      + V D   R+ F      L   LE+ +    P   +++  NK DL  
Sbjct: 74  PYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVP---VLVFANKQDLL- 129

Query: 126 RRAVSKEE 133
             A   EE
Sbjct: 130 -TAAPAEE 136

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 15/83 (18%)

Query: 49  TIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 108
           T++ + +K  +WD  GQ+  R + R YY+   G + V D   RE          DAR+  
Sbjct: 55  TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIG-------DAREEL 107

Query: 109 NP--------NMSIMLVGNKCDL 123
                     +  +++  NK DL
Sbjct: 108 ERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 15/84 (17%)

Query: 49  TIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH- 107
           T+  + +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 47  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR-------IDEARQEL 99

Query: 108 ----ANPNMS---IMLVGNKCDLA 124
                +  M    +++  NK DL 
Sbjct: 100 HRIINDREMRDALLLVFANKQDLP 123

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 41/171 (23%), Positives = 62/171 (36%), Gaps = 44/171 (25%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRPIKLQIW 60
            K +I G   VGKS LL     +    V D+       I        + + G  I +++ 
Sbjct: 4   IKVVIAGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEE-----EIDLGG--IPVRLI 56

Query: 61  DTAGQESFRS---------ITRSYYRGAAGA---LLVYDITRRETFNHLSSWLEDARQHA 108
           DTAG    R          I R+       A   LLV D +            ED     
Sbjct: 57  DTAG---LRETEDEIEKIGIERAREA-IEEADLVLLVVDASEGLD-------EEDLEILE 105

Query: 109 NP-NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158
            P    +++V NK DL         + E  ++ NG   +  SA+T + ++E
Sbjct: 106 LPAKKPVIVVLNKSDLL-------SDAEGISELNGKPIIAISAKTGEGIDE 149

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 14/131 (10%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++    KL IWD  GQ+
Sbjct: 15  MRILMLGLDNAGKTTILKKFNGEDIS-----TISPTLGFNIKTLEYNGYKLNIWDVGGQK 69

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
           S RS  R+Y+      + V D + R         L   L + R       ++++  NK D
Sbjct: 70  SLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGA---TLLIFANKQD 126

Query: 123 LAHRRAVSKEE 133
           L    A+S EE
Sbjct: 127 LP--GALSPEE 135

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 36/175 (20%), Positives = 52/175 (29%), Gaps = 32/175 (18%)

Query: 11  IIGDTGVGKSCLLLQFT-DKRFQ--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG--- 64
           I G   VGKS LL            P+   T           +   P+ L   DT G   
Sbjct: 2   IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPV-RKEWELLPLGPVVLI--DTPGLDE 58

Query: 65  ---QESFRSI-TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLV 117
                  R    R     A   LLV D              E+  +          ++LV
Sbjct: 59  EGGLGRERVEEARQVADRADLVLLVVDSDLTPV--------EEEAKLGLLRERGKPVLLV 110

Query: 118 GNKCDL----AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
            NK DL         + + + E          +  SA   + ++E   K  A++L
Sbjct: 111 LNKIDLVPESEEEELLRERKLELLPDLP---VIAVSALPGEGIDE-LRKKIAELL 161

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 38  TIG--VEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 95
           TIG  VE      T++ + I   +WD  GQ+  R + R Y++   G + V D   RE   
Sbjct: 31  TIGFNVE------TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIG 84

Query: 96  HLSSWLEDARQHANPNMSIMLV-GNKCDL 123
                L+          +++LV  NK DL
Sbjct: 85  EAREELQRMLNEDELRDAVLLVFANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 38 TIG--VEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 92
          TIG  VE      T+  + +K Q+WD  GQ S R   R YY      + V D T R+
Sbjct: 30 TIGFNVE------TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
PLN03108	210	Rab family protein; Provisional	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.98
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.98
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.98
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.98
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.95
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
PTZ00099	176	rab6; Provisional	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
PLN00023	334	GTP-binding protein; Provisional	99.94
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.92
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
KOG1673	205	consensus Ras GTPases [General function prediction	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.9
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.9
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.9
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
PRK04213	201	GTP-binding protein; Provisional	99.89
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.89
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.89
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.89
PRK15494	339	era GTPase Era; Provisional	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.89
cd00881	189	GTP_translation_factor GTP translation factor fami	99.88
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.88
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.88
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
PRK11058	426	GTPase HflX; Provisional	99.87
PRK12297	424	obgE GTPase CgtA; Reviewed	99.87
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.87
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.86
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.86
PRK12296	500	obgE GTPase CgtA; Reviewed	99.86
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.86
PRK05306	787	infB translation initiation factor IF-2; Validated	99.85
PRK00089	292	era GTPase Era; Reviewed	99.85
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.85
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.85
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.85
COG1160	444	Predicted GTPases [General function prediction onl	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
PRK12298	390	obgE GTPase CgtA; Reviewed	99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.85
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.84
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.84
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.84
COG2229	187	Predicted GTPase [General function prediction only	99.83
COG1159	298	Era GTPase [General function prediction only]	99.83
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.83
PRK00093	435	GTP-binding protein Der; Reviewed	99.83
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.82
PRK12317	425	elongation factor 1-alpha; Reviewed	99.82
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.82
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.81
PRK10218	607	GTP-binding protein; Provisional	99.81
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.81
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.81
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.81
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.8
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.8
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.8
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.8
PRK04004	586	translation initiation factor IF-2; Validated	99.8
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.79
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.79
COG1160	444	Predicted GTPases [General function prediction onl	99.78
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.78
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.78
COG0486	454	ThdF Predicted GTPase [General function prediction	99.78
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.77
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.77
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.77
PRK12736	394	elongation factor Tu; Reviewed	99.76
PRK12735	396	elongation factor Tu; Reviewed	99.75
COG2262	411	HflX GTPases [General function prediction only]	99.75
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.74
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.74
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.73
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.73
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.73
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.73
COG0218	200	Predicted GTPase [General function prediction only	99.73
CHL00071	409	tufA elongation factor Tu	99.72
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.72
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.72
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.72
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.71
COG1084	346	Predicted GTPase [General function prediction only	99.71
PLN00043	447	elongation factor 1-alpha; Provisional	99.7
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.7
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.7
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.7
PLN03126	478	Elongation factor Tu; Provisional	99.7
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.69
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
PTZ00141	446	elongation factor 1- alpha; Provisional	99.69
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.69
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.68
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.68
PRK00049	396	elongation factor Tu; Reviewed	99.68
COG1163	365	DRG Predicted GTPase [General function prediction	99.67
PLN03127	447	Elongation factor Tu; Provisional	99.65
PRK13351	687	elongation factor G; Reviewed	99.65
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.65
KOG1145	683	consensus Mitochondrial translation initiation fac	99.65
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.65
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.64
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.64
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.64
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.64
COG3596	296	Predicted GTPase [General function prediction only	99.63
COG0536	369	Obg Predicted GTPase [General function prediction	99.62
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.61
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.61
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.59
PRK12739	691	elongation factor G; Reviewed	99.59
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.58
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.58
PRK09602	396	translation-associated GTPase; Reviewed	99.57
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.57
PRK09866	741	hypothetical protein; Provisional	99.56
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.54
KOG0090	238	consensus Signal recognition particle receptor, be	99.52
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.51
PRK12740	668	elongation factor G; Reviewed	99.51
PRK00007	693	elongation factor G; Reviewed	99.5
PRK14845	1049	translation initiation factor IF-2; Provisional	99.49
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.49
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.48
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.48
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.47
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.46
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.46
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.45
PTZ00258	390	GTP-binding protein; Provisional	99.45
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.45
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.45
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.44
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.42
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.42
PRK13768	253	GTPase; Provisional	99.41
PRK07560	731	elongation factor EF-2; Reviewed	99.4
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.39
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.38
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.38
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.38
PTZ00416	836	elongation factor 2; Provisional	99.37
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.36
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.35
PRK09601	364	GTP-binding protein YchF; Reviewed	99.35
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.34
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.33
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.33
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.32
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.3
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.29
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.29
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.29
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.26
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.25
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.25
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.24
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.24
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.22
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.21
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.2
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.2
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.2
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.2
KOG0410	410	consensus Predicted GTP binding protein [General f	99.19
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.15
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.12
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.1
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.09
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.08
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.07
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.04
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.04
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.03
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.99
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.99
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.96
PRK12289	352	GTPase RsgA; Reviewed	98.93
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.91
KOG0460	449	consensus Mitochondrial translation elongation fac	98.91
PRK12288	347	GTPase RsgA; Reviewed	98.9
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.87
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.84
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.83
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.82
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.81
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.8
PRK00098	298	GTPase RsgA; Reviewed	98.79
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.79
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.77
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.75
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.74
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.7
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.69
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.68
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.68
KOG2486	320	consensus Predicted GTPase [General function predi	98.67
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.67
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.67
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.66
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.66
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.66
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.64
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.62
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.61
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.59
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.58
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.58
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.57
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.57
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.57
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.56
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.52
COG1161	322	Predicted GTPases [General function prediction onl	98.52
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.51
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.51
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.5
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.47
PRK13796	365	GTPase YqeH; Provisional	98.47
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.45
cd03112	158	CobW_like The function of this protein family is u	98.42
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.42
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.4
PRK10416	318	signal recognition particle-docking protein FtsY;	98.4
PRK14974	336	cell division protein FtsY; Provisional	98.38
PRK12288	347	GTPase RsgA; Reviewed	98.36
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.35
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.31
KOG1143	591	consensus Predicted translation elongation factor	98.3
PRK01889	356	GTPase RsgA; Reviewed	98.28
PRK12289	352	GTPase RsgA; Reviewed	98.26
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.24
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.23
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.2
COG1162	301	Predicted GTPases [General function prediction onl	98.16
PRK13796	365	GTPase YqeH; Provisional	98.15
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.14
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.12
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.09
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.08
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	98.05
COG3523	1188	IcmF Type VI protein secretion system component Va	98.03
PRK00098	298	GTPase RsgA; Reviewed	98.02
PRK13695	174	putative NTPase; Provisional	98.02
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.97
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.97
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.96
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.95
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.94
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.93
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.92
COG1162	301	Predicted GTPases [General function prediction onl	97.92
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.91
KOG4273	418	consensus Uncharacterized conserved protein [Funct	97.91
cd03114	148	ArgK-like The function of this protein family is u	97.9
COG0523	323	Putative GTPases (G3E family) [General function pr	97.89
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.87
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.87
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.8
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.8
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.78
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.76
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.73
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.71
TIGR00959	428	ffh signal recognition particle protein. This mode	97.7
PRK10867	433	signal recognition particle protein; Provisional	97.7
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.69
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.67
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.64
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.62
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.6
KOG2484	435	consensus GTPase [General function prediction only	97.6
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.55
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.55
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.54
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.54
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.53
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.51
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.45
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.45
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.4
PRK08118	167	topology modulation protein; Reviewed	97.39
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.38
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.38
KOG1533	290	consensus Predicted GTPase [General function predi	97.38
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.36
COG1161	322	Predicted GTPases [General function prediction onl	97.36
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.35
cd03111	106	CpaE_like This protein family consists of proteins	97.35
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.35
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.32
cd03110	179	Fer4_NifH_child This protein family's function is	97.32
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.32
PRK07261	171	topology modulation protein; Provisional	97.31
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.31
PRK05480	209	uridine/cytidine kinase; Provisional	97.25
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.25
PRK10646	153	ADP-binding protein; Provisional	97.23
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.22
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.21
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.2
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.2
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.18
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.18
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.14
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.13
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.12
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.12
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.11
PTZ00088	229	adenylate kinase 1; Provisional	97.11
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	97.11
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.1
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.07
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.06
COG0802	149	Predicted ATPase or kinase [General function predi	97.06
PF00004	132	AAA: ATPase family associated with various cellula	97.05
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.04
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.04
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.04
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.03
PRK06217	183	hypothetical protein; Validated	97.03
cd02036	179	MinD Bacterial cell division requires the formatio	97.02
smart00382	148	AAA ATPases associated with a variety of cellular	97.01
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.0
PRK01889	356	GTPase RsgA; Reviewed	96.99
PRK03839	180	putative kinase; Provisional	96.98
PRK04195	482	replication factor C large subunit; Provisional	96.96
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.96
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.96
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.96
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.95
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.95
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.93
PRK14530	215	adenylate kinase; Provisional	96.93
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.92
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.92
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.9
PRK00300	205	gmk guanylate kinase; Provisional	96.9
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.88
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	96.88
PRK13949	169	shikimate kinase; Provisional	96.88
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.88
PRK14738	206	gmk guanylate kinase; Provisional	96.87
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.87
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.87
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.86
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.86
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.86
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	96.85

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-42  Score=244.38  Aligned_cols=174  Identities=53%  Similarity=0.921  Sum_probs=167.7

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      ++|.+||+|+|+.|+|||.|+.||.+..|.+.+..|.+.++....+.++++.+++++|||+||++|+.+...|++.+|++
T Consensus         6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi   85 (205)
T KOG0084|consen    6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   85 (205)
T ss_pred             cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFI  161 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~  161 (210)
                      |+|||+++.+||.++..|+.++..+...++|.++|+||+|+.+...++.++++.++..++++ ++++||+++.|+.++|.
T Consensus        86 i~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~  165 (205)
T KOG0084|consen   86 IFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFL  165 (205)
T ss_pred             EEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHH
Confidence            99999999999999999999999999889999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 028303          162 KTAAKILQNIQEGAL  176 (210)
Q Consensus       162 ~l~~~~~~~~~~~~~  176 (210)
                      .|...+..+......
T Consensus       166 ~la~~lk~~~~~~~~  180 (205)
T KOG0084|consen  166 TLAKELKQRKGLHVK  180 (205)
T ss_pred             HHHHHHHHhcccCCC
Confidence            999998888776543

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.1e-41  Score=235.25  Aligned_cols=209  Identities=75%  Similarity=1.189  Sum_probs=186.9

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (210)
                      |++.+.+|++++|+.|+|||.|+.+|++..|.+.+..|.+.++....+.++++.+++++|||+|++.+.++...|++.+-
T Consensus         1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~   80 (216)
T KOG0098|consen    1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA   80 (216)
T ss_pred             CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      ++|+|||+++.++|..+..|+..++++...+.-+++++||+|+...+.++.+|.+.|++++++.++++||++++++.+.|
T Consensus        81 GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF  160 (216)
T KOG0098|consen   81 GALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF  160 (216)
T ss_pred             ceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccccC--Ccccc--cCCCCCCCCCCCCCcccCC---Ccc
Q 028303          161 IKTAAKILQNIQEGALDAVNDS--GIKVG--YGRGQGPSGARDGTVSQRG---GCC  209 (210)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~---~c~  209 (210)
                      ......+.+....+-......+  +++.+  --+.+.+..+++....+.+   |||
T Consensus       161 ~nta~~Iy~~~q~g~~~~~~~~k~k~k~~p~~~~~~~~~~~~~~~~~~~~~s~gcc  216 (216)
T KOG0098|consen  161 INTAKEIYRKIQDGVFDDINESKGKIKIGPQIRRIRVSIASSDMSGSEGGASDGCC  216 (216)
T ss_pred             HHHHHHHHHHHHhcccccccccccceeecccccccccCcccccccccccccccCCC
Confidence            9999999999998777666655  34433  2223344444444444444   566

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-40  Score=235.42  Aligned_cols=172  Identities=44%  Similarity=0.764  Sum_probs=163.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+|+|..++|||||+.||..+.|.+...+|++..+....+.++...+++.||||+|++.|.++.+.|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      +|||+++.+||..++.|+..+.+...+++-+.+|+||+|+.+.+.+..+++..++...++.||++||+++.|+.++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999887778888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcc
Q 028303          164 AAKILQNIQEGA  175 (210)
Q Consensus       164 ~~~~~~~~~~~~  175 (210)
                      .+.+....++..
T Consensus       163 a~~lp~~~~~~~  174 (200)
T KOG0092|consen  163 AEKLPCSDPQER  174 (200)
T ss_pred             HHhccCcccccc
Confidence            999887766654

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-39  Score=233.59  Aligned_cols=175  Identities=53%  Similarity=0.972  Sum_probs=168.8

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      .+++.+||+++|++++|||+++.+|..+.+...+..|.++++...++.+++..+.+++|||+|++.|..+...|++.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +++|||+++..||+++..|+..+..+...++|.++|+||+|+...+.++.+.++++|.++++.++|+||++|.||++.|-
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 028303          162 KTAAKILQNIQEGAL  176 (210)
Q Consensus       162 ~l~~~~~~~~~~~~~  176 (210)
                      .|.+.++.+.+....
T Consensus       168 ~La~~i~~k~~~~~~  182 (207)
T KOG0078|consen  168 SLARDILQKLEDAEL  182 (207)
T ss_pred             HHHHHHHhhcchhhh
Confidence            999999997776643

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=9.7e-39  Score=240.22  Aligned_cols=209  Identities=86%  Similarity=1.338  Sum_probs=187.1

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (210)
                      |.+++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|
T Consensus         1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad   80 (210)
T PLN03108          1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            88999999999999999999999999999888888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      ++++|||++++.++..+..|+..+........|+++++||.|+.+.+.++.+++.++++.++++++++|++++.|++++|
T Consensus        81 ~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f  160 (210)
T PLN03108         81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF  160 (210)
T ss_pred             EEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999888776655679999999999998877888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccccC-CcccccCCCCCCCCCCCCCcccCCCcc
Q 028303          161 IKTAAKILQNIQEGALDAVNDS-GIKVGYGRGQGPSGARDGTVSQRGGCC  209 (210)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~  209 (210)
                      +++++.+.+...+.......++ ++.+....-++.+..+.++..|-+|||
T Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
T PLN03108        161 IKTAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC  210 (210)
T ss_pred             HHHHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCCCCC
Confidence            9999999887765554444444 777777777778888999999999999

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.8e-39  Score=223.07  Aligned_cols=168  Identities=48%  Similarity=0.864  Sum_probs=159.1

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +...+||+++|.+|+|||||+.+|..+.|.+..+.|++.++..+.+.++++.+++.||||+|++.|+.+.+.|++.+.++
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi   87 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI   87 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence            45779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      |+|||++.+++|..+..|.+++..+.. +++-.++|+||+|...++.++.++...|++++++.|+++||++.+++...|+
T Consensus        88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe  167 (209)
T KOG0080|consen   88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE  167 (209)
T ss_pred             EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence            999999999999999999999987764 6677789999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028303          162 KTAAKILQN  170 (210)
Q Consensus       162 ~l~~~~~~~  170 (210)
                      .|+..+++-
T Consensus       168 elveKIi~t  176 (209)
T KOG0080|consen  168 ELVEKIIET  176 (209)
T ss_pred             HHHHHHhcC
Confidence            998888753

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-39  Score=228.43  Aligned_cols=168  Identities=41%  Similarity=0.702  Sum_probs=158.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      +.+|++++|+.++||||||.|+..+.|...|..|++.++-..++.+.+..+++++|||+|||.|+.+.+.|++++.++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCC-CCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      |||+++..||++...|++.+....+. ++-+++|+||.||.+.+++..+++...++++++.|+++||+.|.|+.++|..|
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI  180 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI  180 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence            99999999999999999999988875 47788999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHHh
Q 028303          164 AAKILQNIQ  172 (210)
Q Consensus       164 ~~~~~~~~~  172 (210)
                      ..++.....
T Consensus       181 aa~l~~~~~  189 (221)
T KOG0094|consen  181 AAALPGMEV  189 (221)
T ss_pred             HHhccCccc
Confidence            777665544

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=4.3e-37  Score=232.17  Aligned_cols=207  Identities=48%  Similarity=0.820  Sum_probs=174.2

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            34779999999999999999999999998888888889998888888999899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+.
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~  168 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT  168 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888776668999999999999877777888888999889999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccccCCcccccCCCCCCCCCCCCCcccCCCccC
Q 028303          163 TAAKILQNIQEGALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCCS  210 (210)
Q Consensus       163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  210 (210)
                      |+..+.............. ....+....+++....+..+.+++||||
T Consensus       169 l~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~c~  215 (216)
T PLN03110        169 ILLEIYHIISKKALAAQEA-AANSGLPGQGTTINVADTSGNNKRGCCS  215 (216)
T ss_pred             HHHHHHHHhhccccccccC-cccccCcCcCCcccccCccCCCCCCCcC
Confidence            9999988765433222211 2223344444444333345778899996

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-38  Score=214.55  Aligned_cols=207  Identities=54%  Similarity=0.894  Sum_probs=192.3

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      .|++.+|++++|+.|+|||.|+++|...++......|.+.++....+.+.++.++++||||+|++.|++....|++.+-+
T Consensus         5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG   84 (214)
T KOG0086|consen    5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG   84 (214)
T ss_pred             hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      .++|||+++.++|+.+..|+..++....+++-+++++||.|+.++++++..++..|+.+..+.+.++|+++|+|+.+.|-
T Consensus        85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl  164 (214)
T KOG0086|consen   85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL  164 (214)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence            99999999999999999999999999888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccccC-CcccccCCCCCCCCCCCCCcccCCCc
Q 028303          162 KTAAKILQNIQEGALDAVNDS-GIKVGYGRGQGPSGARDGTVSQRGGC  208 (210)
Q Consensus       162 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c  208 (210)
                      ...+.++.+++.++.++++.. +|.-|+--=++...-++....-++-|
T Consensus       165 ~c~~tIl~kIE~GElDPer~gsGIQYGdaslR~l~~p~s~r~~n~~~c  212 (214)
T KOG0086|consen  165 KCARTILNKIESGELDPERMGSGIQYGDASLRQLRQPRSARAVNPQPC  212 (214)
T ss_pred             HHHHHHHHHHhhcCCCHHHcccccccchhhhhccCCcchhccCCCCCC
Confidence            999999999999999999977 99999877666655555445555556

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-37  Score=221.92  Aligned_cols=181  Identities=55%  Similarity=0.922  Sum_probs=173.0

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      .+++.+||+++|++++|||-|+.||..+.|..+...|.+.++....+.++++.++.+||||+|++.|+....+|++.+.+
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG   89 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG   89 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      .++|||++...+|+++..|+.+++.+...++++++|+||+||.+.+.+..++++.++...+..++++||.+..|+.++|+
T Consensus        90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~  169 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE  169 (222)
T ss_pred             eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccccC
Q 028303          162 KTAAKILQNIQEGALDAVNDS  182 (210)
Q Consensus       162 ~l~~~~~~~~~~~~~~~~~~~  182 (210)
                      .++..+.....+.........
T Consensus       170 ~~l~~I~~~vs~k~~~~~~~~  190 (222)
T KOG0087|consen  170 RVLTEIYKIVSKKQLDENNDP  190 (222)
T ss_pred             HHHHHHHHHHHHHhhhccccc
Confidence            999999999988766655543

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=3.1e-36  Score=224.49  Aligned_cols=184  Identities=41%  Similarity=0.706  Sum_probs=160.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +.|+++|+.|+|||||+++|..+.+...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36899999999999999999999999988999998988888889999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      |++++.+++++..|+..+......+.|+++|+||+|+.+.+.+..+++.+++++. ++.|+++||++|.|++++|++|++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887665567999999999999877888888899998875 788999999999999999999999


Q ss_pred             HHHHHHhhccccccccC-CcccccCC
Q 028303          166 KILQNIQEGALDAVNDS-GIKVGYGR  190 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~-~~~~~~~~  190 (210)
                      .+.+..+........+. ...+.-+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (202)
T cd04120         161 DILKKMPLDILRNELSNSILSLQPEP  186 (202)
T ss_pred             HHHHhCccccccccccchhhccCCCC
Confidence            88776555444444433 33444333

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=4.3e-36  Score=221.73  Aligned_cols=170  Identities=38%  Similarity=0.744  Sum_probs=155.9

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      .+++.+||+|+|..|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus         2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~   81 (189)
T cd04121           2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG   81 (189)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            35678999999999999999999999998888888888888887878889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +|+|||++++.+++++..|+..+.... .+.|+|+|+||.|+.+.+.++.++++.+++..+++++++||++|.|++++|+
T Consensus        82 illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~  160 (189)
T cd04121          82 IILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT  160 (189)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            999999999999999999999997654 5799999999999988778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028303          162 KTAAKILQNIQ  172 (210)
Q Consensus       162 ~l~~~~~~~~~  172 (210)
                      +|.+.+..+..
T Consensus       161 ~l~~~i~~~~~  171 (189)
T cd04121         161 ELARIVLMRHG  171 (189)
T ss_pred             HHHHHHHHhcC
Confidence            99988875444

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=4.7e-36  Score=224.35  Aligned_cols=173  Identities=38%  Similarity=0.667  Sum_probs=152.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      +||+|+|++|+|||||+++|.+..+...+.+|.+.++....+.++ +..+.+.+|||||++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999988888998888887778887 7888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc----CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHA----NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAF  160 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~  160 (210)
                      ||++++.+++.+..|+..+....    ..++|+++|+||.|+.+......+++.+++...+ ..++++||+++.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999988876532    2578999999999997666778889999999988 689999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccc
Q 028303          161 IKTAAKILQNIQEGALDAV  179 (210)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~~  179 (210)
                      ++|.+.+.........+..
T Consensus       161 ~~l~~~l~~~~~~~~~~~~  179 (201)
T cd04107         161 RFLVKNILANDKNLQQAET  179 (201)
T ss_pred             HHHHHHHHHhchhhHhhcC
Confidence            9999998876554443333

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.7e-37  Score=208.48  Aligned_cols=181  Identities=45%  Similarity=0.778  Sum_probs=165.8

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +++.++.+++|++|+|||+|+.+|..+.|...|..|++.++...++.+++..++++|||++|++.|+.+...+++..+++
T Consensus         5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv   84 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV   84 (198)
T ss_pred             HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      ++|||+++.+||.+...|+..++..+. .+|-++|+||.|.++++.+..++++.++...++.+|++|+++++|+...|.-
T Consensus        85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c  163 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC  163 (198)
T ss_pred             EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence            999999999999999999999987654 6889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccccCCc
Q 028303          163 TAAKILQNIQEGALDAVNDSGI  184 (210)
Q Consensus       163 l~~~~~~~~~~~~~~~~~~~~~  184 (210)
                      |.++++........+..+...+
T Consensus       164 it~qvl~~k~r~~~~~~r~~~~  185 (198)
T KOG0079|consen  164 ITKQVLQAKLRESVEQQRADAV  185 (198)
T ss_pred             HHHHHHHHHHhhcHHHHhhcce
Confidence            9999888774444333333333

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=3e-35  Score=221.30  Aligned_cols=206  Identities=50%  Similarity=0.855  Sum_probs=172.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      +.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            4689999999999999999999999988888888888887777766 466789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      +|||++++.+++++..|+..+..... ...|+++|+||.|+.+...+..+++..+++.++++++++||+++.|++++|+.
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998876644 45788999999999887778888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccccC-CcccccCCCCCCC-CCCC-CCcccCCCccC
Q 028303          163 TAAKILQNIQEGALDAVNDS-GIKVGYGRGQGPS-GARD-GTVSQRGGCCS  210 (210)
Q Consensus       163 l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~~~~~~~~c~~  210 (210)
                      |.+.+...+..+......+. +++-+..+++.=+ ..++ .+..+.+.|||
T Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
T cd04111         161 LTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC  211 (211)
T ss_pred             HHHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence            99999888877654444444 5555555544322 1222 45667788887

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.4e-36  Score=208.27  Aligned_cols=205  Identities=44%  Similarity=0.751  Sum_probs=178.1

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      +++.+++.|+|++-+|||+|++.++.+++++-..||.+.++....+.+ ++..+++++|||+|++.|+++...|++++-+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            468899999999999999999999999999999999999998877665 6778899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeE-EEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHAN-PNMSI-MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~-ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  159 (210)
                      +++|||+++..||+++..|......... +..++ .+|++|+|+...++++.+|++.++..++..|+++|++++.|+++.
T Consensus        85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence            9999999999999999999998877765 44454 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccccC-CcccccCCCCCCCCCCCCCcccCCCccC
Q 028303          160 FIKTAAKILQNIQEGALDAVNDS-GIKVGYGRGQGPSGARDGTVSQRGGCCS  210 (210)
Q Consensus       160 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~  210 (210)
                      |..|.+.+...+.++.+.....- +++.+.   +++...+-.-+++.+.|||
T Consensus       165 F~mlaqeIf~~i~qGeik~edgw~gvKSsr---pn~i~~s~~~~~P~k~c~C  213 (213)
T KOG0091|consen  165 FDMLAQEIFQAIQQGEIKLEDGWGGVKSSR---PNQIPRSPSRKQPSKPCQC  213 (213)
T ss_pred             HHHHHHHHHHHHhcCceeeeeccccccccC---CCcCCCcccccCCCCCCCC
Confidence            99999999999999887766654 544422   2223323344667778876

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.7e-37  Score=209.49  Aligned_cols=171  Identities=35%  Similarity=0.698  Sum_probs=161.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      .+.+||+++|..-+|||||+-|+..++|......|....+..+.+.+++....++||||+|++.|..+-+.|++.+++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal   90 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL   90 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence            36799999999999999999999999999999988888888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      +|||+++.+||+.++.|...++......+-+++|+||+|+++++.++.+++..++...++.|+++||+++.||.++|+.|
T Consensus        91 LVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L  170 (218)
T KOG0088|consen   91 LVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL  170 (218)
T ss_pred             EEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence            99999999999999999999999988788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 028303          164 AAKILQNIQEG  174 (210)
Q Consensus       164 ~~~~~~~~~~~  174 (210)
                      ..+.+......
T Consensus       171 t~~MiE~~s~~  181 (218)
T KOG0088|consen  171 TAKMIEHSSQR  181 (218)
T ss_pred             HHHHHHHhhhc
Confidence            99888776543

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-36  Score=204.34  Aligned_cols=207  Identities=41%  Similarity=0.704  Sum_probs=183.6

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      +|++.+||+++|..|+|||.|+++|+.+.|++....|++.++..+++.+++.+++++||||+|++.|+++...|++.+++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +|+|||++..++|+-+..|+..+..+...++--|+|+||.|+.+++++..+.+++|.+.....|.++||++-.|++.+|.
T Consensus        83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence            99999999999999999999999999888888899999999999989998889999998888899999999999999999


Q ss_pred             HHHHHHHHHHhhccccccccCCcccccCCCCCCCCCCCCCcccCCCcc
Q 028303          162 KTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCC  209 (210)
Q Consensus       162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  209 (210)
                      .+.-.+.......+...+.+..+-.++ .++++++--+--+.|...||
T Consensus       163 ~~a~rli~~ar~~d~v~~~~a~a~~~~-seg~si~l~s~aqt~~~~cc  209 (213)
T KOG0095|consen  163 DLACRLISEARQNDLVNNVSAPAPNSS-SEGKSIKLISYAQTQLLTCC  209 (213)
T ss_pred             HHHHHHHHHHHhccchhhccccCcccc-CCCCcccchhHHHHHHhccc
Confidence            999999988888776555444443333 55566654444456667787

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.3e-34  Score=214.45  Aligned_cols=186  Identities=42%  Similarity=0.682  Sum_probs=162.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998878888888888778888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      |++++.++..+..|+..+........|+++++||.|+.+...+..+++..++...+++++++||+++.|++++|++|++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999998887665668999999999998777778888888988888999999999999999999999999


Q ss_pred             HHHHHhhccccccccCCcccccCCCCCCCCCCCCCcccCCCccC
Q 028303          167 ILQNIQEGALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCCS  210 (210)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  210 (210)
                      +..+.....                  .+-.+..++..|..|||
T Consensus       161 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~  186 (188)
T cd04125         161 IIKRLEEQE------------------LSPKNIKQQFKKKNNCF  186 (188)
T ss_pred             HHHHhhcCc------------------CCccccccccccccCcc
Confidence            876554432                  11124556667777775

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.8e-34  Score=215.37  Aligned_cols=171  Identities=46%  Similarity=0.785  Sum_probs=154.1

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +++.+||+|+|++|+|||||+++|.+..+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            56789999999999999999999999998888888888888777788888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      ++|||++++.++..+..|+..+.... ...|+++|+||+|+.+...+..+++..++...+++++++|++++.|++++|++
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence            99999999999999999999886654 46899999999999877777888888899888899999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028303          163 TAAKILQNIQEG  174 (210)
Q Consensus       163 l~~~~~~~~~~~  174 (210)
                      |.+.++....+.
T Consensus       162 l~~~~~~~~~~~  173 (199)
T cd04110         162 ITELVLRAKKDN  173 (199)
T ss_pred             HHHHHHHhhhcc
Confidence            999998665544

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-35  Score=201.71  Aligned_cols=173  Identities=41%  Similarity=0.790  Sum_probs=164.6

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      .+++.+|++++|+..+|||||+.++.+..|...+..|.+.++..+++.-..+.+++++|||+|++.++.+...+++++++
T Consensus        17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg   96 (193)
T KOG0093|consen   17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG   96 (193)
T ss_pred             cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence            46789999999999999999999999999999999999999999988777788999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +|++||+++.+|+..+..|.-.+....-.+.|+|+++||+|+..++.++.+.++.+++++|..||++|++.+.|+.++|+
T Consensus        97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe  176 (193)
T KOG0093|consen   97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFE  176 (193)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHH
Confidence            99999999999999999999999888878999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 028303          162 KTAAKILQNIQEG  174 (210)
Q Consensus       162 ~l~~~~~~~~~~~  174 (210)
                      .++..+-+.+.+.
T Consensus       177 ~lv~~Ic~kmses  189 (193)
T KOG0093|consen  177 RLVDIICDKMSES  189 (193)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999888877654

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.4e-34  Score=210.18  Aligned_cols=164  Identities=68%  Similarity=1.104  Sum_probs=151.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999999999999999888888888888877788899899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      ||++++.+++.+..|+..+......+.|+++|+||+|+.+...++.+++..++...+++++++||++|.|++++|..+.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887766667899999999999887778888999999999999999999999999999999998


Q ss_pred             HHHH
Q 028303          166 KILQ  169 (210)
Q Consensus       166 ~~~~  169 (210)
                      .+.+
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            7754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1e-34  Score=215.25  Aligned_cols=185  Identities=37%  Similarity=0.625  Sum_probs=156.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      ||+|+|.+|+|||||+++|..+.+...+.++.+..+. ....+++..+.+.+|||||++.+..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            5899999999999999999999888877777665543 345678888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           88 ITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      ++++.+++.+..|+..+.....   .+.|+++|+||+|+.+...+...++..++...+++++++||+++.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888866542   4689999999999987777788888888888889999999999999999999999


Q ss_pred             HHHHHHHhhccccccccCCcccccCCCCCCCCCCCCCcccCCCccC
Q 028303          165 AKILQNIQEGALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCCS  210 (210)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  210 (210)
                      +.+......+.                 .+-.+..-++.+|++||+
T Consensus       160 ~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~  188 (190)
T cd04144         160 RALRQQRQGGQ-----------------GPKGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHhhcccC-----------------CCcCCCCCcccccccCce
Confidence            98876665542                 123334445777778875

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.7e-34  Score=208.84  Aligned_cols=166  Identities=55%  Similarity=0.986  Sum_probs=152.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            46799999999999999999999999999988888888887777888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      +|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887655679999999999998777778888889999889999999999999999999999


Q ss_pred             HHHHHH
Q 028303          164 AAKILQ  169 (210)
Q Consensus       164 ~~~~~~  169 (210)
                      .+.+..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            988764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=3.8e-34  Score=216.08  Aligned_cols=164  Identities=35%  Similarity=0.585  Sum_probs=148.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC-EEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      +||+++|++|+|||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999999999999888887787765 578999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      ||+++++++.++..|+..+.....   .+.|+++|+||.|+.+.+.+..+++..++..++++++++||++|+|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999998876642   35689999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028303          163 TAAKILQN  170 (210)
Q Consensus       163 l~~~~~~~  170 (210)
                      |.+.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=8.6e-34  Score=214.81  Aligned_cols=169  Identities=25%  Similarity=0.455  Sum_probs=149.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+|+|++|+|||||+++|....|...+.+|.+..+.. .+.+++..+.+.||||+|++.|..++..+++.+|++|
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            356899999999999999999999999999999998766643 4778999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEe
Q 028303           84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEAS  149 (210)
Q Consensus        84 ~V~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s  149 (210)
                      +|||++++.+++++ ..|+..+.... .+.|+|+|+||.|+.+            ...++.++++++++..++ .|+++|
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS  168 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS  168 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence            99999999999984 78998887654 4789999999999964            256888999999999998 699999


Q ss_pred             cCCCC-CHHHHHHHHHHHHHHHHhhc
Q 028303          150 ARTAQ-NVEEAFIKTAAKILQNIQEG  174 (210)
Q Consensus       150 a~~~~-~i~~~~~~l~~~~~~~~~~~  174 (210)
                      |+++. +++++|+.++..+++.....
T Consensus       169 Aktg~~~V~e~F~~~~~~~~~~~~~~  194 (232)
T cd04174         169 AFTSEKSIHSIFRSASLLCLNKLSPP  194 (232)
T ss_pred             CCcCCcCHHHHHHHHHHHHHHhcccc
Confidence            99997 89999999999887654443

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=5.3e-34  Score=211.62  Aligned_cols=165  Identities=47%  Similarity=0.851  Sum_probs=147.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      +||+|+|++|+|||||+++|.+..+.. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988754 5667777777776778888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      ||++++.+++++..|+..+......+.|+++|+||.|+...+.+..+++..++..++++|+++||+++.|++++|++|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999888776567899999999999766677778888999888999999999999999999999999


Q ss_pred             HHHHHH
Q 028303          166 KILQNI  171 (210)
Q Consensus       166 ~~~~~~  171 (210)
                      .+....
T Consensus       161 ~~~~~~  166 (191)
T cd04112         161 ELKHRK  166 (191)
T ss_pred             HHHHhc
Confidence            887654

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=5.2e-34  Score=214.80  Aligned_cols=164  Identities=33%  Similarity=0.545  Sum_probs=141.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|.+|+|||||+++|..+.+.. +.++.+..+....+    ..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998864 45666655543322    4678999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-------------------RRAVSKEEGEQFAKENG-----  142 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  142 (210)
                      |++++.++.++..|+..+......+.|+|+|+||+|+.+                   .+.+..+++..++++.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999988888765556799999999999975                   56788899999999876     


Q ss_pred             ---------CeEEEEecCCCCCHHHHHHHHHHHHHHHHhhcc
Q 028303          143 ---------LLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  175 (210)
Q Consensus       143 ---------~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~  175 (210)
                               ++|+++||++|.|++++|+.+++.++....+..
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~  197 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQR  197 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence                     689999999999999999999998887666554

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=4.8e-34  Score=211.53  Aligned_cols=170  Identities=38%  Similarity=0.611  Sum_probs=149.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            3469999999999999999999999988888878776555 455678888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+.+++++||+++.|+.++|++
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999988866543 57899999999999776677777888888888899999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028303          163 TAAKILQNIQEG  174 (210)
Q Consensus       163 l~~~~~~~~~~~  174 (210)
                      |++.+.+..++.
T Consensus       162 l~~~l~~~~~~~  173 (189)
T PTZ00369        162 LVREIRKYLKED  173 (189)
T ss_pred             HHHHHHHHhhcc
Confidence            999887765544

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=5e-34  Score=209.71  Aligned_cols=163  Identities=28%  Similarity=0.519  Sum_probs=146.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+++|++|+|||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            46799999999999999999999999998888888876654 55778999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEe
Q 028303           84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEAS  149 (210)
Q Consensus        84 ~V~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s  149 (210)
                      +|||++++.+++++ ..|+..+.... ++.|+++|+||.|+.+            ...++.+++.++++..++ +|+++|
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            99999999999997 78998887764 5789999999999864            245888999999999995 899999


Q ss_pred             cCCCCC-HHHHHHHHHHHHH
Q 028303          150 ARTAQN-VEEAFIKTAAKIL  168 (210)
Q Consensus       150 a~~~~~-i~~~~~~l~~~~~  168 (210)
                      |+++.| ++++|+.+++.++
T Consensus       161 Ak~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         161 ALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHHh
Confidence            999998 9999999988654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=7.4e-34  Score=208.85  Aligned_cols=168  Identities=41%  Similarity=0.790  Sum_probs=150.3

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC----------CEEEEEEEEecCCcchhhhhh
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------GRPIKLQIWDTAGQESFRSIT   72 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~   72 (210)
                      +++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+.          +..+.+.+||+||++.+..++
T Consensus         1 ~~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   80 (180)
T cd04127           1 YDYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT   80 (180)
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence            3578999999999999999999999999988888888887776666554          456889999999999999999


Q ss_pred             HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecC
Q 028303           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR  151 (210)
Q Consensus        73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  151 (210)
                      ..+++.+|++++|||++++.++.++..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.+++...+++++++||+
T Consensus        81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak  160 (180)
T cd04127          81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA  160 (180)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence            999999999999999999999999999998887654 2578999999999998777788888999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 028303          152 TAQNVEEAFIKTAAKILQN  170 (210)
Q Consensus       152 ~~~~i~~~~~~l~~~~~~~  170 (210)
                      ++.|++++|+.|.+.+.++
T Consensus       161 ~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         161 TGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999888754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=8.8e-34  Score=207.05  Aligned_cols=167  Identities=32%  Similarity=0.542  Sum_probs=148.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+|+|.+|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            479999999999999999999999998888888765453 4467888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      ||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+.++.+++..+++..+++++++||+++.|++++|++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999998888776653 35799999999999987777888899999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 028303          165 AKILQNIQE  173 (210)
Q Consensus       165 ~~~~~~~~~  173 (210)
                      +.+.+..+.
T Consensus       161 ~~~~~~~~~  169 (172)
T cd04141         161 REIRRKESM  169 (172)
T ss_pred             HHHHHhccC
Confidence            988775443

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=203.72  Aligned_cols=170  Identities=38%  Similarity=0.694  Sum_probs=158.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||.++|++|+|||||+++|...+|...+..|++.++..+.+.+++..+.++||||+|++.|.++...+++.+|..+
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCC--CCCCHHHHHHHHHHc-CCeEEEEecCCCCCH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHR--RAVSKEEGEQFAKEN-GLLFLEASARTAQNV  156 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i  156 (210)
                      +|||++++.+|+++..|...+.....    ...|.|+++||+|+.+.  ++++...++.++... +++||++|||...|+
T Consensus        87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV  166 (210)
T KOG0394|consen   87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV  166 (210)
T ss_pred             EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence            99999999999999999999877654    45899999999999763  788999999999976 489999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 028303          157 EEAFIKTAAKILQNIQE  173 (210)
Q Consensus       157 ~~~~~~l~~~~~~~~~~  173 (210)
                      .+.|+.+.+.++.....
T Consensus       167 ~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  167 DEAFEEIARRALANEDR  183 (210)
T ss_pred             HHHHHHHHHHHHhccch
Confidence            99999999998887664

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=2.3e-33  Score=204.19  Aligned_cols=167  Identities=85%  Similarity=1.327  Sum_probs=153.1

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      |++.+||+|+|++|+|||||++++.+..+...+.++.+.++....+.+++....+.+||+||++.+..+...+++.+|++
T Consensus         1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   80 (168)
T cd01866           1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   80 (168)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence            56789999999999999999999999998888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      ++|||++++.++..+..|+..+.....++.|+++|+||.|+.+...++.++++.++...++.++++|++++.|++++|.+
T Consensus        81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~  160 (168)
T cd01866          81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN  160 (168)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776678999999999999876777888899999989999999999999999999999


Q ss_pred             HHHHHHH
Q 028303          163 TAAKILQ  169 (210)
Q Consensus       163 l~~~~~~  169 (210)
                      +.+.+.+
T Consensus       161 ~~~~~~~  167 (168)
T cd01866         161 TAKEIYE  167 (168)
T ss_pred             HHHHHHh
Confidence            9888754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=7e-34  Score=207.78  Aligned_cols=159  Identities=33%  Similarity=0.647  Sum_probs=143.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||+.++..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            79999999999999999999999998888998876664 45678889999999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCCCC----------CCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 028303           87 DITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHRR----------AVSKEEGEQFAKENGL-LFLEASARTAQ  154 (210)
Q Consensus        87 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~sa~~~~  154 (210)
                      |++++.||+++ ..|+..+.... .+.|+++|+||+|+.+++          .++.+++.++++..++ .|+++||+++.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999887654 479999999999996543          4778899999999987 59999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028303          155 NVEEAFIKTAAKI  167 (210)
Q Consensus       155 ~i~~~~~~l~~~~  167 (210)
                      |++++|+.+++.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999875

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.9e-33  Score=211.93  Aligned_cols=165  Identities=27%  Similarity=0.504  Sum_probs=142.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+|+|++|+|||||+++|....+...+.+|.+..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999999889998876664 45778999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEecCC
Q 028303           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART  152 (210)
Q Consensus        87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~  152 (210)
                      |++++++++++. .|...+.. ...+.|+|+|+||+|+.+.            ..++.+++..++++.++ .|+++||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999985 45555443 3467999999999999642            23677889999999985 899999999


Q ss_pred             CCC-HHHHHHHHHHHHHHHHhh
Q 028303          153 AQN-VEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       153 ~~~-i~~~~~~l~~~~~~~~~~  173 (210)
                      +.+ ++++|+.+....+.....
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccCC
Confidence            885 999999999987665443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.9e-33  Score=204.04  Aligned_cols=163  Identities=53%  Similarity=0.939  Sum_probs=149.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999998888888888888878888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      ||+++++++..+..|+..+......+.|+++++||.|+.+...+..+++..++...+++++++|++++.|++++|+.|.+
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999887765567899999999999877778888899999999999999999999999999999998


Q ss_pred             HHH
Q 028303          166 KIL  168 (210)
Q Consensus       166 ~~~  168 (210)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.3e-34  Score=191.41  Aligned_cols=206  Identities=60%  Similarity=0.975  Sum_probs=183.6

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      .|.+.+|..++|+-|+|||.|++.|+..+|....+.+.+.++....+.+.+.++++++|||+|++.|+.....+++.+.+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      .+.|||++.+.+..++..|+...+....++..+++++||.|++..+.+..+++++|+.++++.++++|+++|.++.+.|-
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            99999999999999999999999888888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccccC-CcccccCCCCCCCCCCCCCcccCCCc
Q 028303          162 KTAAKILQNIQEGALDAVNDS-GIKVGYGRGQGPSGARDGTVSQRGGC  208 (210)
Q Consensus       162 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c  208 (210)
                      ...+.+.+.+.++..+.+-.. ++...-..-++.+- .+-..++|.+|
T Consensus       167 e~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l-~se~~~~kd~c  213 (215)
T KOG0097|consen  167 ETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSL-SSEATGAKDQC  213 (215)
T ss_pred             HHHHHHHHhhhcCcccccchhccCcCCCCCCCcccc-ccCCCCccccC
Confidence            999999999999998888755 55443332222222 22334566778

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=2.2e-33  Score=202.93  Aligned_cols=160  Identities=43%  Similarity=0.838  Sum_probs=147.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||+++|....+.+.+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999998888888888888788888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      |++++.++..+..|+..+......+.|+++|+||.|+.+.+.+..+++..+++..+++|+++||+++.|++++|++|.++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999998877655579999999999998777788889999999889999999999999999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=4e-33  Score=202.28  Aligned_cols=162  Identities=43%  Similarity=0.777  Sum_probs=147.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888888887777777777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      |++++.+++.+..|+..+........|+++|+||+|+.+.+....+++.+++...+++++++||+++.|++++|++|.+.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999998877655678999999999998777777788888888888999999999999999999999886


Q ss_pred             HH
Q 028303          167 IL  168 (210)
Q Consensus       167 ~~  168 (210)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            54

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=3e-33  Score=202.16  Aligned_cols=161  Identities=40%  Similarity=0.753  Sum_probs=153.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      ||+|+|++++|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+..+...+++.+|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303           88 ITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      ++++.|+..+..|+..+......+.|+++++||.|+.+.+.++.+++++++..++++|+++|++++.++.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999888776799999999999988888999999999999999999999999999999999999887


Q ss_pred             H
Q 028303          168 L  168 (210)
Q Consensus       168 ~  168 (210)
                      +
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.7e-33  Score=205.36  Aligned_cols=161  Identities=30%  Similarity=0.529  Sum_probs=143.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+++|++|+|||||+++|.+..+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+..+...+++.+|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            379999999999999999999999998888888776654 4577889999999999999999999999999999999999


Q ss_pred             EECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEecC
Q 028303           86 YDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEASAR  151 (210)
Q Consensus        86 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~  151 (210)
                      ||++++.|++++ ..|+..+.... .+.|+++|+||.|+.+            ...++.+++.++++..++ +|+++||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 78998887764 5789999999999964            245788999999999997 79999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q 028303          152 TAQN-VEEAFIKTAAKIL  168 (210)
Q Consensus       152 ~~~~-i~~~~~~l~~~~~  168 (210)
                      +|++ ++++|..+++..+
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999988644

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=7.1e-33  Score=200.85  Aligned_cols=164  Identities=58%  Similarity=0.951  Sum_probs=149.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ++.+||+++|+++||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868           1 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            35689999999999999999999999988888888888888888888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      +|||++++.++..+..|+..+......+.|+++|+||.|+.+.+....++...++...+++++++||+++.|++++|+.|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  160 (165)
T cd01868          81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL  160 (165)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999998887765578999999999998777778888888988888999999999999999999999


Q ss_pred             HHHH
Q 028303          164 AAKI  167 (210)
Q Consensus       164 ~~~~  167 (210)
                      ...+
T Consensus       161 ~~~i  164 (165)
T cd01868         161 LTEI  164 (165)
T ss_pred             HHHh
Confidence            8765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=5.3e-33  Score=201.67  Aligned_cols=162  Identities=33%  Similarity=0.703  Sum_probs=148.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+|+|++|+|||||+++|.+..+.+.+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888999898888888888899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHAN-----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      |++++.++..+..|+..+.....     .+.|+++|+||+|+.+......++.+.++...+++++++||+++.|+.++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999998876643     4689999999999976666778888888888889999999999999999999


Q ss_pred             HHHHHHH
Q 028303          162 KTAAKIL  168 (210)
Q Consensus       162 ~l~~~~~  168 (210)
                      +|.+.++
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998775

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=5.5e-33  Score=206.09  Aligned_cols=162  Identities=29%  Similarity=0.578  Sum_probs=142.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+++|+.++|||||+.+|..+.+.+.+.+|.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            589999999999999999999999998888888876554 3467888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEecC
Q 028303           86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEASAR  151 (210)
Q Consensus        86 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~  151 (210)
                      ||++++.+++++. .|...+.... .++|+++|+||.|+.+.            ..+..++++.+++..+ .+++++||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999997 5777666543 57999999999999653            2356778899999888 589999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 028303          152 TAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       152 ~~~~i~~~~~~l~~~~~~  169 (210)
                      ++.|++++|+.|++.+..
T Consensus       161 ~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999988765

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.2e-32  Score=199.70  Aligned_cols=163  Identities=48%  Similarity=0.887  Sum_probs=147.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ++.+||+++|++|+|||||+++|..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            35799999999999999999999999888888888887777777888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~  162 (210)
                      +|||++++.++..+..|+..+......+.|+++|+||+|+.+.+....+++..++...+. .++++|+++|.|++++|+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999999776666899999999999987777788888888888775 6899999999999999999


Q ss_pred             HHHH
Q 028303          163 TAAK  166 (210)
Q Consensus       163 l~~~  166 (210)
                      |.+.
T Consensus       161 l~~~  164 (165)
T cd01864         161 MATE  164 (165)
T ss_pred             HHHh
Confidence            9865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=5e-32  Score=204.05  Aligned_cols=167  Identities=51%  Similarity=0.833  Sum_probs=144.0

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      ....+||+|+|++|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~   89 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI   89 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            456799999999999999999999988764 5566777777777788888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHH-HHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303           83 LLVYDITRRETFNHLSS-WLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      ++|||+++++++.++.. |...+.... ..+.|+++|+||.|+.....+..++...++...++.|+++||+++.|++++|
T Consensus        90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~  169 (211)
T PLN03118         90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF  169 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999876 444444332 2468999999999998777777788888888889999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          161 IKTAAKILQN  170 (210)
Q Consensus       161 ~~l~~~~~~~  170 (210)
                      ++|.+.+...
T Consensus       170 ~~l~~~~~~~  179 (211)
T PLN03118        170 EELALKIMEV  179 (211)
T ss_pred             HHHHHHHHhh
Confidence            9999988654

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.1e-32  Score=202.76  Aligned_cols=162  Identities=27%  Similarity=0.504  Sum_probs=142.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|+.|+|||||+++|..+.+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998889999998888888888998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC-----CCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-----RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      |++++.++.++..|+..+........| ++|+||+|+..     ......++++++++..+++++++||+++.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999988776544567 67899999852     111224567788888889999999999999999999


Q ss_pred             HHHHHHHH
Q 028303          162 KTAAKILQ  169 (210)
Q Consensus       162 ~l~~~~~~  169 (210)
                      ++.+.+..
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99988864

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=1.9e-32  Score=197.77  Aligned_cols=160  Identities=61%  Similarity=1.031  Sum_probs=147.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      |++++.++..+..|+..+......+.|+++++||.|+.....+..+++..++...++.++++|++++.|+.++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877766789999999999998777788888999999999999999999999999999998875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=5.2e-32  Score=201.22  Aligned_cols=166  Identities=33%  Similarity=0.599  Sum_probs=144.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      +||+|+|++|+|||||+++|.++.+.. .+.++.+..+....+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998875 5777878878777788999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC----CCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR----RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      ||++++.+++++..|+..+... ..+.|+++|+||+|+.+.    ..+..+++..++...+++++++||+++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999888664 347899999999998532    34455677888888889999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028303          162 KTAAKILQNIQE  173 (210)
Q Consensus       162 ~l~~~~~~~~~~  173 (210)
                      .|.+.+.+...+
T Consensus       160 ~i~~~~~~~~~~  171 (193)
T cd04118         160 KVAEDFVSRANN  171 (193)
T ss_pred             HHHHHHHHhccc
Confidence            999999765543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1.2e-32  Score=199.05  Aligned_cols=160  Identities=38%  Similarity=0.631  Sum_probs=141.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||++++....+...+.++.+ ......+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988877777765 344555778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      |++++.+++.+..|+..+..... .+.|+++|+||+|+.+...+..+++..++..++.+++++||+++.|+.++|++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999888876543 57899999999999776667777788888888899999999999999999999987


Q ss_pred             HH
Q 028303          166 KI  167 (210)
Q Consensus       166 ~~  167 (210)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.7e-32  Score=200.79  Aligned_cols=160  Identities=27%  Similarity=0.549  Sum_probs=139.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      ++||+++|++|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            479999999999999999999999998888888776664 3467788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEecC
Q 028303           86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEASAR  151 (210)
Q Consensus        86 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~  151 (210)
                      ||++++.+++++. .|+..+.... .++|+++|+||+|+.+.            +.+..++++++++..+ ..|+++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999997 4777776543 47899999999998543            4567788888998876 689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028303          152 TAQNVEEAFIKTAAKI  167 (210)
Q Consensus       152 ~~~~i~~~~~~l~~~~  167 (210)
                      +|.|++++|+.++..+
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=4.1e-32  Score=200.83  Aligned_cols=166  Identities=31%  Similarity=0.559  Sum_probs=141.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      +||+|+|++|+|||||+++|.++.+...+.++.+.++... +... +..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999999888888776665443 4454 6778999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC----CCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHH
Q 028303           86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR----RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEA  159 (210)
Q Consensus        86 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~  159 (210)
                      ||++++.+++++. .|+..+... ..+.|+++|+||.|+...    ..+..+++.+++...++ +++++||+++.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999986 477666543 357899999999998653    24667888899998888 8999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 028303          160 FIKTAAKILQNIQEG  174 (210)
Q Consensus       160 ~~~l~~~~~~~~~~~  174 (210)
                      |+.+.+.+.......
T Consensus       159 f~~l~~~~~~~~~~~  173 (187)
T cd04132         159 FDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999988766554

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=7.3e-32  Score=195.08  Aligned_cols=163  Identities=61%  Similarity=0.983  Sum_probs=148.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      |++++.+++.+..|+..+......+.|+++|+||+|+........+.+..++...+++++++|++++.|++++|+.|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999998877765689999999999997766777788888988889999999999999999999999988


Q ss_pred             HHH
Q 028303          167 ILQ  169 (210)
Q Consensus       167 ~~~  169 (210)
                      +..
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            754

Rab GTPases are implicated in vesicle trafficking.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=4.7e-32  Score=196.39  Aligned_cols=160  Identities=39%  Similarity=0.643  Sum_probs=141.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            6999999999999999999998888777777766554 345778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...+..+++..+++..+++++++||+++.|++++|++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999988887653 367999999999999877777777788888888899999999999999999999987


Q ss_pred             HH
Q 028303          166 KI  167 (210)
Q Consensus       166 ~~  167 (210)
                      .+
T Consensus       161 ~l  162 (164)
T cd04175         161 QI  162 (164)
T ss_pred             Hh
Confidence            65

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1e-31  Score=195.84  Aligned_cols=162  Identities=37%  Similarity=0.660  Sum_probs=143.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      ||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+++|||||++.+..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999999999998888887878888989999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      +++++++..+..|+..+..... ...|+++|+||.|+.+...  ...+++..++.+++.+++++||+++.|++++|+.|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999988765433 3578999999999865433  345667788888889999999999999999999998


Q ss_pred             HHHHH
Q 028303          165 AKILQ  169 (210)
Q Consensus       165 ~~~~~  169 (210)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88753

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=9.4e-32  Score=195.29  Aligned_cols=160  Identities=32%  Similarity=0.598  Sum_probs=141.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|||||||++++....+...+.++.+.+.....+..++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999998888888888888887777777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      |++++.++.++..|+..+..... ++|+++|+||+|+.+. ... .+..+++....++++++||+++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999877654 7999999999999743 233 34456777778899999999999999999999988


Q ss_pred             HHH
Q 028303          167 ILQ  169 (210)
Q Consensus       167 ~~~  169 (210)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=9.2e-32  Score=194.31  Aligned_cols=159  Identities=36%  Similarity=0.623  Sum_probs=143.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC--CEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--GRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      +||+++|++++|||||+++|.+..+.+.+.++.+.++....+.+.  +..+.+.+|||||++.+..++..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999999888888888888777767776  778899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      |||+++++++..+..|+..+.... .++|+++|+||.|+..+..+..+++..++...+++++++|++++.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999988876543 4799999999999987777788889999999999999999999999999999987


Q ss_pred             HH
Q 028303          165 AK  166 (210)
Q Consensus       165 ~~  166 (210)
                      ..
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            53

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=7e-32  Score=204.04  Aligned_cols=164  Identities=31%  Similarity=0.542  Sum_probs=145.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            46799999999999999999999999998889999888888877878888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      +|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. .+..+++ .++...+++|+++||+++.|+.++|++|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999887654 57999999999999643 3344444 6777788999999999999999999999


Q ss_pred             HHHHHHH
Q 028303          164 AAKILQN  170 (210)
Q Consensus       164 ~~~~~~~  170 (210)
                      ++.+.+.
T Consensus       168 ~~~~~~~  174 (219)
T PLN03071        168 ARKLAGD  174 (219)
T ss_pred             HHHHHcC
Confidence            9888644

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=1.6e-31  Score=194.67  Aligned_cols=163  Identities=39%  Similarity=0.688  Sum_probs=144.8

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      ....+||+++|++|+|||||+++|.+..+.+.+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            34679999999999999999999999999888888888887777788899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CeEEEEecCCCCCHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVE  157 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~  157 (210)
                      ++|||++++.++..+..|+..+.....    .++|+++|+||.|+. .+.+..+++++++..++ .+++++||+++.|+.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            999999999999999999887765432    468999999999986 45567788999988887 479999999999999


Q ss_pred             HHHHHHHHH
Q 028303          158 EAFIKTAAK  166 (210)
Q Consensus       158 ~~~~~l~~~  166 (210)
                      ++|+.+++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999998865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=1.4e-31  Score=193.18  Aligned_cols=160  Identities=41%  Similarity=0.745  Sum_probs=146.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++++|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999998888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      |++++.++..+..|+..+......+.|+++++||+|+.+......++...++...+++++++|++++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999998876655579999999999997666777788888888888999999999999999999999764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.1e-31  Score=194.38  Aligned_cols=161  Identities=41%  Similarity=0.649  Sum_probs=141.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.. ......+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            489999999999999999999998887777765533 3455677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      |++++.++..+..|+..+..... .+.|+++|+||+|+.+......+++..++...+++++++||+++.|++++|++|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999888766533 47899999999999876667777888888888899999999999999999999987


Q ss_pred             HHH
Q 028303          166 KIL  168 (210)
Q Consensus       166 ~~~  168 (210)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            664

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=1.8e-31  Score=193.06  Aligned_cols=161  Identities=36%  Similarity=0.603  Sum_probs=141.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+++|++|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            58999999999999999999999888777777765443 34456788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      ||++++.++..+..|+..+.... ..+.|+++++||+|+.....+..+++.+++...+++++++||+++.|++++|+.|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998887653 35789999999999987666777788888888889999999999999999999998


Q ss_pred             HHH
Q 028303          165 AKI  167 (210)
Q Consensus       165 ~~~  167 (210)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=2.8e-31  Score=191.94  Aligned_cols=162  Identities=48%  Similarity=0.858  Sum_probs=147.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+++|++|+|||||+++|.+..+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998887788878878788888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      +|+++++++..+..|+..+........|+++++||+|+........++...++...+++++++|+++|.|+.++|++|.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999988776577999999999999866667778888888888899999999999999999999988


Q ss_pred             HH
Q 028303          166 KI  167 (210)
Q Consensus       166 ~~  167 (210)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.9e-31  Score=194.37  Aligned_cols=162  Identities=43%  Similarity=0.808  Sum_probs=145.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh-hhhHHhhccccEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-SITRSYYRGAAGALL   84 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~   84 (210)
                      .+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++.+|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999998888888888888888888889989999999999999886 578889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC---CCCHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART---AQNVEEAF  160 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~~~  160 (210)
                      |||++++.++..+..|+..+.... ..++|+++|+||+|+.+...+..+++.+++....++|+++||++   +.++.++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999998887654 35799999999999987777888888899998889999999999   89999999


Q ss_pred             HHHHHHH
Q 028303          161 IKTAAKI  167 (210)
Q Consensus       161 ~~l~~~~  167 (210)
                      ..+.+.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9988765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.2e-31  Score=193.95  Aligned_cols=160  Identities=34%  Similarity=0.581  Sum_probs=140.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|.+|+|||||++++..+.+.+.+.++.+ ......+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            7999999999999999999999988887777654 445566778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      |++++.++.++..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|.++.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999888876543 57999999999999766666777778888878889999999999999999999986


Q ss_pred             HH
Q 028303          166 KI  167 (210)
Q Consensus       166 ~~  167 (210)
                      .+
T Consensus       161 ~l  162 (163)
T cd04176         161 QM  162 (163)
T ss_pred             hc
Confidence            54

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1.7e-31  Score=193.76  Aligned_cols=159  Identities=33%  Similarity=0.508  Sum_probs=138.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||++++.+..+...+.++.+..+ ...+..+...+.+.+|||||++.+..++..+++.+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999998777777765444 444566778889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      |++++.+++.+..|+..+.....   .+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999887765432   578999999999997766677778888888888999999999999999999998


Q ss_pred             HHH
Q 028303          164 AAK  166 (210)
Q Consensus       164 ~~~  166 (210)
                      +..
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=1.5e-31  Score=195.58  Aligned_cols=158  Identities=32%  Similarity=0.589  Sum_probs=137.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||+.++..+.+...+.++.... ....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceee-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            799999999999999999999999988888886543 3445678888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEecCC
Q 028303           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEASART  152 (210)
Q Consensus        87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~~  152 (210)
                      |+++++++.++. .|+..+.... .+.|+++|+||.|+.+.            ..++.+++..++.+++ ++++++||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999996 5777665543 57999999999999542            2467888999999888 4899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028303          153 AQNVEEAFIKTAAK  166 (210)
Q Consensus       153 ~~~i~~~~~~l~~~  166 (210)
                      |.|++++|+.+.+.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=2.8e-31  Score=191.47  Aligned_cols=159  Identities=38%  Similarity=0.668  Sum_probs=138.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            7999999999999999999999988877777766544 445677888888999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      |+++..++.++..|+..+..... .+.|+++|+||+|+.+ .....+++..++...+++++++||+++.|++++|++|++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999888876543 5789999999999976 345567788888888899999999999999999999986


Q ss_pred             HH
Q 028303          166 KI  167 (210)
Q Consensus       166 ~~  167 (210)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-33  Score=193.76  Aligned_cols=181  Identities=39%  Similarity=0.699  Sum_probs=162.9

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC---------CEEEEEEEEecCCcchhhhhh
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID---------GRPIKLQIWDTAGQESFRSIT   72 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~   72 (210)
                      +|++.+|.+.+|++|+||||++.++++++|......|.++++..+.+.++         +..+.+++|||+|++.|+++.
T Consensus         5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT   84 (219)
T KOG0081|consen    5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT   84 (219)
T ss_pred             cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence            36788999999999999999999999999999999999999988876652         356789999999999999999


Q ss_pred             HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecC
Q 028303           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR  151 (210)
Q Consensus        73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  151 (210)
                      ..+++.+=+++++||+++..||-+++.|+..+..+. ..+..+|+++||+|+++.+.++.+++..+++++++|||++||-
T Consensus        85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~  164 (219)
T KOG0081|consen   85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC  164 (219)
T ss_pred             HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence            999999999999999999999999999999997664 3456688899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccccccC
Q 028303          152 TAQNVEEAFIKTAAKILQNIQEGALDAVNDS  182 (210)
Q Consensus       152 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~  182 (210)
                      ++.|+.+..+.|+.+++++++.--.....|-
T Consensus       165 tg~Nv~kave~LldlvM~Rie~~v~~s~~p~  195 (219)
T KOG0081|consen  165 TGTNVEKAVELLLDLVMKRIEQCVEKSEIPL  195 (219)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence            9999999999999999999987654444433

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=3.8e-31  Score=191.19  Aligned_cols=160  Identities=32%  Similarity=0.553  Sum_probs=139.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||+++|....+.+.+.++.+.+.......+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988887777777777777778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      |++++.++.++..|+..+.... .+.|+++|+||.|+...   ..++...++...+++++++||+++.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999998886543 46899999999998432   2344556677778899999999999999999999988


Q ss_pred             HHHH
Q 028303          167 ILQN  170 (210)
Q Consensus       167 ~~~~  170 (210)
                      +.++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            7764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=1.6e-31  Score=197.98  Aligned_cols=162  Identities=34%  Similarity=0.580  Sum_probs=138.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      ||+|+|++|+|||||+++|....+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            7999999999999999999999998888888766654 346678888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHcC-CeEEEEecCCC
Q 028303           88 ITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENG-LLFLEASARTA  153 (210)
Q Consensus        88 ~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~~~  153 (210)
                      ++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..            .+..+++..++...+ ++|+++||+++
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            99999999986 5887776543 479999999999996543            345667778887776 68999999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 028303          154 QNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       154 ~~i~~~~~~l~~~~~~~~  171 (210)
                      .|++++|++|.+.++...
T Consensus       160 ~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         160 RGVNEAFTEAARVALNVR  177 (189)
T ss_pred             CCHHHHHHHHHHHHhccc
Confidence            999999999998887433

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=9.1e-31  Score=188.80  Aligned_cols=161  Identities=40%  Similarity=0.762  Sum_probs=144.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||+++|.+..+...+.++.+.......+.+.+..+.+.+||+||++.+..++..+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887777777667776667777788889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      |+++++++..+..|+..+......+.|+++++||+|+.....+..+++.+++...+++++++|++++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999988877765679999999999998767777788888888889999999999999999999999876


Q ss_pred             H
Q 028303          167 I  167 (210)
Q Consensus       167 ~  167 (210)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=3.3e-31  Score=197.35  Aligned_cols=167  Identities=21%  Similarity=0.261  Sum_probs=139.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh--------hhHHhhcc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYRG   78 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~   78 (210)
                      +||+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||.+.+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999888888877666666677888889999999999654321        23345789


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHhhc---CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCeEEEEecCCCC
Q 028303           79 AAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQ  154 (210)
Q Consensus        79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~  154 (210)
                      +|++|+|||++++++++.+..|+..+....   ..++|+++|+||+|+.+.+....+++..++. .++++|+++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999988887654   3679999999999997766666677777654 468899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q 028303          155 NVEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       155 ~i~~~~~~l~~~~~~~~~~  173 (210)
                      |++++|+.+++.++..-+.
T Consensus       161 ~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         161 HILLLFKELLISATTRGRS  179 (198)
T ss_pred             CHHHHHHHHHHHhhccCCC
Confidence            9999999999888755444

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=1.1e-30  Score=189.19  Aligned_cols=160  Identities=31%  Similarity=0.565  Sum_probs=140.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      +||+++|++|||||||+++|...  .+...+.++.+.++....+.++ +..+.+.+|||||++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  6777888888888777766665 56789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      +|||++++.++..+..|+..+.... .+.|+++|+||.|+.+...+...++..+....+++++++|++++.|+.++|+.|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999998887654 468999999999997776677777777777778899999999999999999999


Q ss_pred             HHHH
Q 028303          164 AAKI  167 (210)
Q Consensus       164 ~~~~  167 (210)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8765

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=1.9e-30  Score=189.16  Aligned_cols=165  Identities=42%  Similarity=0.740  Sum_probs=145.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888887777888988899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~  161 (210)
                      |++++.++.++..|...+.....    .++|+++|+||+|+........++...++...+ .+++++|++++.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999888888876654432    368999999999997656667788888888876 7899999999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          162 KTAAKILQNI  171 (210)
Q Consensus       162 ~l~~~~~~~~  171 (210)
                      .|.+.+.+..
T Consensus       161 ~i~~~~~~~~  170 (172)
T cd01862         161 TIARKALEQE  170 (172)
T ss_pred             HHHHHHHhcc
Confidence            9999887763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=3e-30  Score=187.66  Aligned_cols=167  Identities=50%  Similarity=0.873  Sum_probs=146.9

Q ss_pred             CC-CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccc
Q 028303            1 MS-YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGA   79 (210)
Q Consensus         1 m~-~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   79 (210)
                      |. +.+.++|+++|++|+|||||++++....+.+.+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus         1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   80 (169)
T cd04114           1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (169)
T ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence            55 35679999999999999999999998888777777777778777788888888999999999999999889999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303           80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (210)
Q Consensus        80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  159 (210)
                      |++++|||++++.++..+..|+..+......+.|+++|+||.|+.+...+..+..+.+......+++++|+++|.|++++
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  160 (169)
T cd04114          81 NALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKL  160 (169)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHH
Confidence            99999999999999999999998887766667999999999999776666666677777777788999999999999999


Q ss_pred             HHHHHHHH
Q 028303          160 FIKTAAKI  167 (210)
Q Consensus       160 ~~~l~~~~  167 (210)
                      |+.|.+.+
T Consensus       161 ~~~i~~~~  168 (169)
T cd04114         161 FLDLACRL  168 (169)
T ss_pred             HHHHHHHh
Confidence            99998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.3e-30  Score=193.89  Aligned_cols=156  Identities=30%  Similarity=0.587  Sum_probs=139.4

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCCh
Q 028303           12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR   91 (210)
Q Consensus        12 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~   91 (210)
                      +|.+|+|||||+++|....+...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999988888888988888888888899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028303           92 ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  170 (210)
Q Consensus        92 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  170 (210)
                      .++..+..|+..+.... .++|+++|+||+|+... .+..+. ..++...++.|+++||+++.|+.++|++|++.+...
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999887754 47999999999998643 344443 467778889999999999999999999999988654

Ran is involved in the active transport of proteins through nuclear pores.

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=8.4e-31  Score=190.82  Aligned_cols=163  Identities=21%  Similarity=0.298  Sum_probs=140.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      .+.+||+++|++|+|||||+++|.+..+. ..+.+|.+..+....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46899999999999999999999999998 78888888888777788888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFI  161 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~  161 (210)
                      ++|||++++.++..+..|+..+...  .++|+++|+||.|+.+.......+..+++...++ .++++||+++.|++++|+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            9999999999999988888765332  3689999999999965544444456677777776 468999999999999999


Q ss_pred             HHHHHHH
Q 028303          162 KTAAKIL  168 (210)
Q Consensus       162 ~l~~~~~  168 (210)
                      .|.+.+.
T Consensus       160 ~l~~~~~  166 (169)
T cd01892         160 KLATAAQ  166 (169)
T ss_pred             HHHHHhh
Confidence            9998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=99.98  E-value=3.6e-30  Score=185.83  Aligned_cols=159  Identities=51%  Similarity=0.912  Sum_probs=141.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777888888877777778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      |++++.++..+..|+..+..... .+.|+++|+||.|+.. .....++...++...+++++++|+++|.|++++++.+.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999888876643 6799999999999973 345667888898888999999999999999999999887


Q ss_pred             H
Q 028303          166 K  166 (210)
Q Consensus       166 ~  166 (210)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.98  E-value=2.4e-30  Score=198.41  Aligned_cols=160  Identities=26%  Similarity=0.464  Sum_probs=139.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+|+|++|+|||||+++|.+..+...+.++.+ ++....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999998887777765 455566788888999999999999999888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhh---------cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCeEEEEecCCCCCH
Q 028303           87 DITRRETFNHLSSWLEDARQH---------ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNV  156 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i  156 (210)
                      |++++++++++..|+..+...         ...+.|+|+|+||+|+.+...+..+++.+++.. ..+.++++||+++.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888653         224789999999999976666778888887764 4678999999999999


Q ss_pred             HHHHHHHHHHH
Q 028303          157 EEAFIKTAAKI  167 (210)
Q Consensus       157 ~~~~~~l~~~~  167 (210)
                      +++|+.|...+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999998854

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04177 RSR1 RSR1 subgroup

Probab=99.98  E-value=4.6e-30  Score=186.73  Aligned_cols=161  Identities=39%  Similarity=0.636  Sum_probs=141.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            6899999999999999999999998777777766443 455678888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      |++++.+++.+..|+..+.... ..+.|+++++||.|+.+.+....+++..++..++ ++++++||+++.|++++|+++.
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999988886643 3579999999999998777777777888888877 8899999999999999999998


Q ss_pred             HHHH
Q 028303          165 AKIL  168 (210)
Q Consensus       165 ~~~~  168 (210)
                      ..++
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            8765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.98  E-value=1.6e-30  Score=193.04  Aligned_cols=158  Identities=27%  Similarity=0.452  Sum_probs=128.7

Q ss_pred             eEEEEEEcCCCCCHHHHHH-HHHhCC-----CCCCCCCCcee-EEEEEE--------EEECCEEEEEEEEecCCcchhhh
Q 028303            6 LFKYIIIGDTGVGKSCLLL-QFTDKR-----FQPVHDLTIGV-EFGARM--------VTIDGRPIKLQIWDTAGQESFRS   70 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~   70 (210)
                      .+||+++|+.|+|||||+. ++.+..     +...+.+|.+. +.....        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 665443     34556677642 222211        25688899999999999975  3


Q ss_pred             hhHHhhccccEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCC-------------------CCCCC
Q 028303           71 ITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH-------------------RRAVS  130 (210)
Q Consensus        71 ~~~~~~~~~d~~i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~  130 (210)
                      ....+++.+|++|+|||++++.+++++. .|+..+.... .+.|+++|+||+|+.+                   .+.++
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4566889999999999999999999997 5888776654 4789999999999864                   36778


Q ss_pred             HHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303          131 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      .+++++++++++++|+++||+++.|++++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            899999999999999999999999999999998764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=2.5e-30  Score=187.58  Aligned_cols=160  Identities=39%  Similarity=0.586  Sum_probs=136.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch-hhhhhHHhhccccEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~V~   86 (210)
                      ||+|+|++|+|||||++++....+...+.++....+ ...+.+++..+.+.+||+||++. +......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999998888777777654333 44567888889999999999885 3445677889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCC-CCHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA-QNVEEAFIKT  163 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~-~~i~~~~~~l  163 (210)
                      |++++.+++.+..|+..+....  ..+.|+++|+||+|+.+...+..+++..++...+.+|+++|++++ .|++++|+.|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988887654  357999999999999776777788888999888999999999999 5999999999


Q ss_pred             HHHHH
Q 028303          164 AAKIL  168 (210)
Q Consensus       164 ~~~~~  168 (210)
                      .+.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            87654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd00154 Rab Rab family

Probab=99.97  E-value=7.1e-30  Score=183.08  Aligned_cols=158  Identities=59%  Similarity=0.983  Sum_probs=145.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++++|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      |+++++++..+..|+..+........|+++++||+|+........+++++++...+++++++|++++.|+.+++++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999988887656799999999999975566778889999998899999999999999999999876

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.97  E-value=3.4e-30  Score=188.32  Aligned_cols=158  Identities=33%  Similarity=0.622  Sum_probs=136.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEEC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI   88 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~   88 (210)
                      |+|+|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999999887777765444 34567788889999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 028303           89 TRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASARTAQ  154 (210)
Q Consensus        89 ~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~  154 (210)
                      +++.+++++. .|+..+.... .+.|+++|+||+|+...            ..++.+++..++...+. .++++||+++.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999986 5888776643 47999999999998642            23677788889998886 89999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028303          155 NVEEAFIKTAAKIL  168 (210)
Q Consensus       155 ~i~~~~~~l~~~~~  168 (210)
                      |++++|+.+++.++
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=4.2e-30  Score=185.04  Aligned_cols=153  Identities=21%  Similarity=0.381  Sum_probs=129.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||++++..+.+...+.++ ...+ ...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            48999999999999999999998887765544 3333 35578888888999999999975     24567899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLA--HRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      |++++.+++++..|+..+..... .+.|+++|+||.|+.  ..+.+..++++++++.. ++.|+++||+++.|++++|+.
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999877653 578999999999985  35667788888898876 589999999999999999999


Q ss_pred             HHHH
Q 028303          163 TAAK  166 (210)
Q Consensus       163 l~~~  166 (210)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=6e-30  Score=193.75  Aligned_cols=164  Identities=30%  Similarity=0.402  Sum_probs=139.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhc-cccEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR-GAAGALL   84 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~   84 (210)
                      +||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++....+.+||++|++  ......+++ .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999988876 5666665556777778888888999999999998  334455666 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      |||++++.++..+..|+..+..... .+.|+|+|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999988876542 579999999999998777777888888888888999999999999999999999


Q ss_pred             HHHHHHHHh
Q 028303          164 AAKILQNIQ  172 (210)
Q Consensus       164 ~~~~~~~~~  172 (210)
                      .+.+.....
T Consensus       159 ~~~~~~~~~  167 (221)
T cd04148         159 VRQIRLRRD  167 (221)
T ss_pred             HHHHHhhhc
Confidence            988864443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=1.1e-29  Score=185.69  Aligned_cols=157  Identities=31%  Similarity=0.581  Sum_probs=135.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||++++.+..+...+.++. .+.....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999998888887775 4444456778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEecCC
Q 028303           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEASART  152 (210)
Q Consensus        87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~  152 (210)
                      |++++.+++++. .|+..+... ..+.|+++++||.|+..            .+.+..+++..++...+. .++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999985 577777643 24689999999999853            345677889999998887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 028303          153 AQNVEEAFIKTAA  165 (210)
Q Consensus       153 ~~~i~~~~~~l~~  165 (210)
                      +.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=9.9e-30  Score=185.84  Aligned_cols=159  Identities=29%  Similarity=0.533  Sum_probs=136.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||+++|....+...+.++.... ....+.+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            589999999999999999999999887777775433 3445678888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEecCC
Q 028303           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART  152 (210)
Q Consensus        87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~  152 (210)
                      |++++.++..+. .|...+... ..+.|+++|+||+|+.+.            ..++.+++..++...+. +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999886 576666554 567999999999998543            25667788888888885 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028303          153 AQNVEEAFIKTAAKI  167 (210)
Q Consensus       153 ~~~i~~~~~~l~~~~  167 (210)
                      +.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=4.2e-29  Score=183.58  Aligned_cols=164  Identities=36%  Similarity=0.540  Sum_probs=140.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      .||+|+|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..++..+|++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999888766666654443 344667777888999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      |+++..+++.+..|+..+..... .+.|+++++||+|+........++...++...+.+++++|++++.|+.++|++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999998888766543 57899999999999766666666777788888889999999999999999999998


Q ss_pred             HHHHHH
Q 028303          166 KILQNI  171 (210)
Q Consensus       166 ~~~~~~  171 (210)
                      .+....
T Consensus       161 ~~~~~~  166 (180)
T cd04137         161 EIEKVE  166 (180)
T ss_pred             HHHHhc
Confidence            876443

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=4.5e-29  Score=180.37  Aligned_cols=161  Identities=40%  Similarity=0.641  Sum_probs=140.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||+++|+...+...+.++..... .....+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999888777776655443 344667888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      |++++.++..+..|+..+..... .+.|+++|+||+|+.........+...++..++++++++|++++.|+.++|+.|.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999888877643 57999999999999765556667778888888899999999999999999999987


Q ss_pred             HHH
Q 028303          166 KIL  168 (210)
Q Consensus       166 ~~~  168 (210)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=7.7e-32  Score=180.23  Aligned_cols=167  Identities=41%  Similarity=0.801  Sum_probs=154.0

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEEC
Q 028303           10 IIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI   88 (210)
Q Consensus        10 ~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~   88 (210)
                      +++|++++|||.|+-++.+..|.. ....|.++++..+.+..++.++++++|||+|++.|++....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            378999999999999999888755 5667889999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303           89 TRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus        89 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      .+..||++.+.|+.++..+.+..+.+.+++||+|+..++.+..++.+.++..+++|++++||++|-|++..|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999888878889999999999988999999999999999999999999999999999999999888


Q ss_pred             HHHhhccc
Q 028303          169 QNIQEGAL  176 (210)
Q Consensus       169 ~~~~~~~~  176 (210)
                      +.-.....
T Consensus       161 k~~~~~~~  168 (192)
T KOG0083|consen  161 KLKMGAPP  168 (192)
T ss_pred             HhccCCCC
Confidence            76554433

>cd00876 Ras Ras family

Probab=99.97  E-value=3.2e-29  Score=180.32  Aligned_cols=158  Identities=40%  Similarity=0.647  Sum_probs=140.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      ||+++|++|+|||||+++|++..+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999999887777777755 5555566777778899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303           88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      +++++++..+..|+..+..... ...|+++++||+|+........+++..++...+++++++|++++.|++++|++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999988877654 579999999999998767777888989998888999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=1.6e-28  Score=179.59  Aligned_cols=159  Identities=31%  Similarity=0.597  Sum_probs=132.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      .||+++|++|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            58999999999999999999999988888777665554 34677888889999999999999988888899999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEecCC
Q 028303           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART  152 (210)
Q Consensus        87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~  152 (210)
                      |++++++++++. .|...+... ..+.|+++|+||.|+.+.            ..+...++++++...+. +++++||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998886 466666543 347899999999998542            23445677778877664 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028303          153 AQNVEEAFIKTAAKI  167 (210)
Q Consensus       153 ~~~i~~~~~~l~~~~  167 (210)
                      |.|++++|++|.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=1.7e-28  Score=180.82  Aligned_cols=167  Identities=23%  Similarity=0.334  Sum_probs=131.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      .+||+++|++|||||||++++....+... .++.+.+.....+.+ ++..+.+.+|||||++.+..++..+++.+|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            58999999999999999999998877644 455555554444443 3456889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------cCCeEEEEecCCCCCHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------NGLLFLEASARTAQNVE  157 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~i~  157 (210)
                      |+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+  ....++...++..      ..++++++||+++.|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            999999998888888877665442 25789999999999864  2334444444321      12468899999999999


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 028303          158 EAFIKTAAKILQNIQEGA  175 (210)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~  175 (210)
                      ++|++|.+.+....+..+
T Consensus       160 ~l~~~l~~~l~~~~~~~~  177 (183)
T cd04152         160 EGLEKLYEMILKRRKMLR  177 (183)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999999977666543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=3.6e-28  Score=181.29  Aligned_cols=160  Identities=26%  Similarity=0.412  Sum_probs=134.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      ||+++|++|+|||||+++|....+...+.++.. ......+.+.+..+.+.+||+||+..+..++..+++.+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988777666654 3445567778888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCC-CCCCCHHHHHHHHH-HcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAH-RRAVSKEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      ++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..++..+.+. ..+.+++++||+++.|++++|++|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888876654 5799999999999865 34455555554443 4467899999999999999999998


Q ss_pred             HHHH
Q 028303          165 AKIL  168 (210)
Q Consensus       165 ~~~~  168 (210)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8664

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=1.4e-28  Score=178.99  Aligned_cols=155  Identities=20%  Similarity=0.344  Sum_probs=122.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+++|++|+|||||+++|....+.. +.+|.+.+..  .+..  ..+.+.+|||||++.+..++..+++.+|++|
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            356899999999999999999998776643 4556555443  2223  4578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~  157 (210)
                      +|||++++.++.++..|+..+.... ..+.|+++|+||+|+.+  ....+++.+++..     ....++++||++|.|++
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            9999999999988888776665432 25689999999999865  2455666665432     23468999999999999


Q ss_pred             HHHHHHHH
Q 028303          158 EAFIKTAA  165 (210)
Q Consensus       158 ~~~~~l~~  165 (210)
                      ++|++|.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=1.5e-28  Score=180.69  Aligned_cols=160  Identities=18%  Similarity=0.288  Sum_probs=123.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      +..+||+++|+++||||||+++|....+. .+.+|.+.+..  .+.  ...+.+++||+||++.+..++..+++.+|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34689999999999999999999977765 35566565442  233  34578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~  157 (210)
                      +|||+++++++..+..++..+... ...+.|+++++||.|+.+..  ..++....+....     ..++++||++|+|+.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999998888777666432 22478999999999986543  3344433332111     235689999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQN  170 (210)
Q Consensus       158 ~~~~~l~~~~~~~  170 (210)
                      ++|++|.+.+.++
T Consensus       168 e~~~~l~~~~~~~  180 (181)
T PLN00223        168 EGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999998887653

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=2.5e-28  Score=180.54  Aligned_cols=166  Identities=39%  Similarity=0.585  Sum_probs=152.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..+||+++|.+|+|||+|+.+|....|...+.+|.. +.+...+.+++..+.+.|+||+|++++..+...++..+|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            358999999999999999999999999999999977 6666778899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      ||+++++.||+.+..++..+.+... ..+|+++|+||+|+...+.+..+++..++..++++|+++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999999854433 568999999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028303          164 AAKILQNI  171 (210)
Q Consensus       164 ~~~~~~~~  171 (210)
                      ++.+....
T Consensus       161 ~r~~~~~~  168 (196)
T KOG0395|consen  161 VREIRLPR  168 (196)
T ss_pred             HHHHHhhh
Confidence            99887733

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=5.9e-28  Score=175.80  Aligned_cols=157  Identities=34%  Similarity=0.621  Sum_probs=130.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||+++|++..+...+.++... ........++..+.+.+||+||++.+.......++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFD-NYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            58999999999999999999999887666666543 33444677888899999999999998888888889999999999


Q ss_pred             ECCChhhHHHHHH-HHHHHHhhcCCCCeEEEEEecCCCCCCC-----------CCCHHHHHHHHHHcCC-eEEEEecCCC
Q 028303           87 DITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRR-----------AVSKEEGEQFAKENGL-LFLEASARTA  153 (210)
Q Consensus        87 d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~sa~~~  153 (210)
                      |++++.++..... |+..+.... .+.|+++|+||+|+.+..           .+..+++..++...+. +++++|++++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            9999999887664 555554433 479999999999986543           3356777888888877 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 028303          154 QNVEEAFIKTAA  165 (210)
Q Consensus       154 ~~i~~~~~~l~~  165 (210)
                      .|+.++|++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=4e-29  Score=181.08  Aligned_cols=153  Identities=22%  Similarity=0.359  Sum_probs=124.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      .|+++|++|+|||||+++|.+..+...+.++.+...    ..++...+.+.+||+||++.+..++..+++.+|++++|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            379999999999999999999888777777766542    3345557889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCH----HHHHHHHHHcCCeEEEEecCC------CCCHH
Q 028303           88 ITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK----EEGEQFAKENGLLFLEASART------AQNVE  157 (210)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~sa~~------~~~i~  157 (210)
                      ++++.++..+..|+..+.... .++|+++|+||.|+........    .++..++++.++.++++||++      ++|++
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999888888775443 5799999999999876443221    123445566678899999998      99999


Q ss_pred             HHHHHHHH
Q 028303          158 EAFIKTAA  165 (210)
Q Consensus       158 ~~~~~l~~  165 (210)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.96  E-value=4.8e-28  Score=177.25  Aligned_cols=156  Identities=20%  Similarity=0.310  Sum_probs=121.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..+||+++|++|+|||||+++|..+.+. .+.+|.+....  .+..  ..+.+.+||+||++.+..++..+++.+|++|+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            4699999999999999999999877664 35566665543  2333  35789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVEE  158 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~  158 (210)
                      |||++++.+++....|+..+.... ..+.|+++|+||.|+.+..  ..+++.+....     ..+.++++||++|.|+++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  164 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE  164 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence            999999999999888887765432 2568999999999986532  33333332221     223477899999999999


Q ss_pred             HHHHHHHHH
Q 028303          159 AFIKTAAKI  167 (210)
Q Consensus       159 ~~~~l~~~~  167 (210)
                      +|++|.+.+
T Consensus       165 ~~~~l~~~~  173 (175)
T smart00177      165 GLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHh
Confidence            999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=2.4e-28  Score=177.84  Aligned_cols=155  Identities=22%  Similarity=0.374  Sum_probs=124.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      ||+++|++++|||||+++|.+..+.. +.+|.+....  .+..  ..+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999886643 5566554443  2333  45789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC------CeEEEEecCCCCCHHHHH
Q 028303           88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG------LLFLEASARTAQNVEEAF  160 (210)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~  160 (210)
                      ++++.++.++..|+..+.... ..+.|+++|+||+|+.+  ....+++.+++....      +.++++||+++.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            999999999999888876543 24589999999999864  355666766654222      357899999999999999


Q ss_pred             HHHHHHHHH
Q 028303          161 IKTAAKILQ  169 (210)
Q Consensus       161 ~~l~~~~~~  169 (210)
                      ++|.+.+..
T Consensus       154 ~~l~~~~~~  162 (169)
T cd04158         154 DWLSRQLVA  162 (169)
T ss_pred             HHHHHHHhh
Confidence            999876543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04129 Rho2 Rho2 subfamily

Probab=99.96  E-value=9e-28  Score=177.62  Aligned_cols=165  Identities=31%  Similarity=0.539  Sum_probs=136.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      .||+|+|++|+|||||+++|....+.+.+.++....+. ..+.+++..+.+.+||++|++.+.......++.+|++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            58999999999999999999988877766666544443 34567788888999999999988877777889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCC----------CCCCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 028303           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH----------RRAVSKEEGEQFAKENGL-LFLEASARTAQ  154 (210)
Q Consensus        87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~  154 (210)
                      |+++.+++..+. .|+..+.... .+.|+++|+||.|+.+          .+.+..+++..+++..+. +++++||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999987 5877776554 4699999999999854          234556778888888885 79999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q 028303          155 NVEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       155 ~i~~~~~~l~~~~~~~~~~  173 (210)
                      |++++|+.+.+.++...++
T Consensus       160 ~v~~~f~~l~~~~~~~~~~  178 (187)
T cd04129         160 GVDDVFEAATRAALLVRKS  178 (187)
T ss_pred             CHHHHHHHHHHHHhcccCc
Confidence            9999999999877655443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.6e-27  Score=177.41  Aligned_cols=148  Identities=22%  Similarity=0.423  Sum_probs=126.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-----CEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-----GRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      +||+++|++++|||||+++|.+..+...+.+|.+.++....+.++     +..+.+.||||+|++.+..++..+++.+|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888888887777766663     467899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-------------------CCCCeEEEEEecCCCCCCCCCCHH----HHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHA-------------------NPNMSIMLVGNKCDLAHRRAVSKE----EGEQFA  138 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~  138 (210)
                      +|+|||++++.|++++..|+..+....                   ..++|+++|+||.|+.+++.++.+    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999886642                   246899999999999765544443    244678


Q ss_pred             HHcCCeEEEEecCCCC
Q 028303          139 KENGLLFLEASARTAQ  154 (210)
Q Consensus       139 ~~~~~~~~~~sa~~~~  154 (210)
                      .+.+++.++.++.+..
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            8899999999988653

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=4.2e-27  Score=177.70  Aligned_cols=166  Identities=31%  Similarity=0.549  Sum_probs=143.8

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (210)
                      |.....+||+++|++|||||||++++..+.+...+.++.+.++....+..+++.+.+.+||++|++.+..++..+++.++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            34456799999999999999999999988888888899898888888878889999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      ++++|||+++..++..+..|+..+.... .+.|+++++||.|+.+.. ... +...++...++.++++|++++.|+++.|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDRQ-VKA-RQITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcccc-CCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999998887654 468999999999986432 332 3345677778899999999999999999


Q ss_pred             HHHHHHHHH
Q 028303          161 IKTAAKILQ  169 (210)
Q Consensus       161 ~~l~~~~~~  169 (210)
                      .+|.+.+..
T Consensus       161 ~~ia~~l~~  169 (215)
T PTZ00132        161 LWLARRLTN  169 (215)
T ss_pred             HHHHHHHhh
Confidence            999988764

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=9.9e-28  Score=176.60  Aligned_cols=160  Identities=23%  Similarity=0.342  Sum_probs=123.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..+||+++|++++|||||++++..+.+.. +.+|.+.+..  .+..  ..+.+++|||||++.+..++..+++.+|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999998777654 4556555443  2333  45789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVEE  158 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~  158 (210)
                      |+|++++.++.....++..+... ...+.|+++|+||.|+.+.  ...+++......     ..+.++++||++|.|+++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            99999999998888777666432 1246899999999998642  233333222211     123567999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          159 AFIKTAAKILQNI  171 (210)
Q Consensus       159 ~~~~l~~~~~~~~  171 (210)
                      +|++|.+.+.+.+
T Consensus       169 ~~~~l~~~i~~~~  181 (182)
T PTZ00133        169 GLDWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999998877654

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=7.1e-28  Score=173.71  Aligned_cols=152  Identities=20%  Similarity=0.330  Sum_probs=117.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|.+++|||||++++..+.+. .+.++.+....  .+..  ..+.+.+||+||++.+..++..+++.+|+++|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999877775 35666565442  2333  3578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      |++++.++..+..|+..+... .....|+++++||.|+.+..  ..++......     ...+.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999988877766433 22468999999999996532  2333322221     123457899999999999999


Q ss_pred             HHHHH
Q 028303          161 IKTAA  165 (210)
Q Consensus       161 ~~l~~  165 (210)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=1.3e-27  Score=174.65  Aligned_cols=155  Identities=21%  Similarity=0.316  Sum_probs=122.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      +..++|+++|++|+|||||+++|.+..+ ..+.++.+.  ....+.++  .+.+.+||+||++.+...+..+++.+|+++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            3568999999999999999999998754 334455443  33334444  467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  157 (210)
                      +|+|++++.++.....|+..+... ...+.|+++|+||+|+.+..  ..+++..++.     ...++++++||++|.|++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  164 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL  164 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence            999999999998888887776543 23579999999999986532  4555655553     235689999999999999


Q ss_pred             HHHHHHHH
Q 028303          158 EAFIKTAA  165 (210)
Q Consensus       158 ~~~~~l~~  165 (210)
                      ++|++|++
T Consensus       165 ~l~~~l~~  172 (173)
T cd04154         165 QGIDWLVD  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.96  E-value=9.7e-30  Score=178.30  Aligned_cols=170  Identities=31%  Similarity=0.533  Sum_probs=160.6

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      ++..+|++++|..++||||++++++.+.|...+..+++.++....+.+.+..+++.+||++|+++++.+..+|++.+.+-
T Consensus        17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~   96 (246)
T KOG4252|consen   17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS   96 (246)
T ss_pred             hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence            56789999999999999999999999999999999999999998888888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      ++||+-++..||+.+..|++.+....+ .+|.++|-||+|+.++..+...+++.+++.....++.+|++...|+-.+|.+
T Consensus        97 vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~Y  175 (246)
T KOG4252|consen   97 VLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAY  175 (246)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence            999999999999999999999977654 6999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 028303          163 TAAKILQNIQE  173 (210)
Q Consensus       163 l~~~~~~~~~~  173 (210)
                      |++.+.++..+
T Consensus       176 LaeK~~q~~kq  186 (246)
T KOG4252|consen  176 LAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHH
Confidence            99999887765

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=2.8e-27  Score=171.79  Aligned_cols=160  Identities=28%  Similarity=0.391  Sum_probs=123.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+++|++|+|||||+++|.++.+...+..+. ... .....+.+..+.+.+|||||.+.+...+..+++.+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            489999999999999999999998866544332 222 233445667789999999999888777777889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHHHcC--CeEEEEecCCCCCHHHHHH
Q 028303           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKENG--LLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~  161 (210)
                      |++++.++..+. .|+..+.... .+.|+++|+||+|+.+.....  .++...++....  .+++++||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999986 5666666543 479999999999997644321  223333333332  3799999999999999999


Q ss_pred             HHHHHHHH
Q 028303          162 KTAAKILQ  169 (210)
Q Consensus       162 ~l~~~~~~  169 (210)
                      .+.+.+++
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            98887653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.95  E-value=5.4e-28  Score=175.34  Aligned_cols=166  Identities=35%  Similarity=0.619  Sum_probs=147.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ..+|++|+|+.++|||+|+-.+..+.|+..+.+|.. +.+...+.++ ++.+.+.+|||+|+++|+.+++..++++|+++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            468999999999999999999999999999999988 5555557885 99999999999999999999989999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEe
Q 028303           84 LVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEAS  149 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s  149 (210)
                      ++|++.++.|++++. .|+.++..+. ++.|+|+|++|.|+.++            ..+..++++.++++.+ +.|+++|
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS  160 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS  160 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence            999999999999976 6888777665 78999999999999742            3677888999999998 5699999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHh
Q 028303          150 ARTAQNVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       150 a~~~~~i~~~~~~l~~~~~~~~~  172 (210)
                      |++..|++++|+..+..++...+
T Consensus       161 a~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhcccc
Confidence            99999999999998888776543

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=6.2e-27  Score=168.96  Aligned_cols=152  Identities=19%  Similarity=0.307  Sum_probs=116.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +|+++|++|+|||||+++|.+..+ ...+.++.+....  .+.  ...+.+.+|||||++.+..++..+++.+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 4455666554332  222  34578899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc---CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEE  158 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~  158 (210)
                      |++++.++..+..|+..+....   ..+.|+++|+||+|+.+..  ..++......     ....+++++||+++.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999888888877765432   2479999999999986532  2233322221     1234589999999999999


Q ss_pred             HHHHHHH
Q 028303          159 AFIKTAA  165 (210)
Q Consensus       159 ~~~~l~~  165 (210)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=1.1e-26  Score=169.93  Aligned_cols=154  Identities=26%  Similarity=0.344  Sum_probs=119.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+++|++|+|||||+++|....+.. +.++.+.+..  .+.++  .+.+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            46899999999999999999999887754 4555554432  23343  4679999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVEE  158 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~  158 (210)
                      |+|+++++++.....++..+.... ..+.|+++++||+|+.+.  ...++..+..     ....++++++||+++.|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            999999988888877776664432 246899999999998652  2334433222     22345789999999999999


Q ss_pred             HHHHHHH
Q 028303          159 AFIKTAA  165 (210)
Q Consensus       159 ~~~~l~~  165 (210)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=7.4e-26  Score=165.40  Aligned_cols=141  Identities=42%  Similarity=0.692  Sum_probs=127.2

Q ss_pred             CCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhc
Q 028303           29 KRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA  108 (210)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~  108 (210)
                      +.|.+.+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++.++..+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            35677888999999988888899999999999999999999999999999999999999999999999999999887665


Q ss_pred             CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 028303          109 NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       109 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~  169 (210)
                      ....|+++|+||+|+.+.+.+..+++..++..++..++++||+++.|++++|++|.+.+..
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5678999999999998766778888989998888899999999999999999999887644

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=1.7e-26  Score=167.62  Aligned_cols=152  Identities=28%  Similarity=0.403  Sum_probs=117.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC------CCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRF------QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      +|+|+|++|+|||||+++|.+...      ...+.++.+....  .+.++  ...+.+|||||++.+...+..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999986432      1223334343332  33444  4678999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-------cCCeEEEEecCCC
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-------NGLLFLEASARTA  153 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~  153 (210)
                      +++|+|++++.++.....|+..+.... ..+.|+++++||+|+.+.  ...+++..+...       .+++++++||+++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999988888888877765532 257999999999998653  344555554433       2457999999999


Q ss_pred             CCHHHHHHHHHH
Q 028303          154 QNVEEAFIKTAA  165 (210)
Q Consensus       154 ~~i~~~~~~l~~  165 (210)
                      .|+++++++|.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=2.2e-26  Score=170.52  Aligned_cols=156  Identities=26%  Similarity=0.341  Sum_probs=124.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+++|++|||||||+++|.+..+. .+.++.+...  ..+.+++  ..+.+||+||++.+...+..+++.+|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999988764 3444544332  3344554  57889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHH----------------cCCeEE
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----------------NGLLFL  146 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~  146 (210)
                      +|+|+++..++.....|+..+..... .+.|+++++||+|+.+  .+..++++..+..                ...+++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            99999999888888888877765433 5699999999999864  4556666666542                224689


Q ss_pred             EEecCCCCCHHHHHHHHHHH
Q 028303          147 EASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       147 ~~sa~~~~~i~~~~~~l~~~  166 (210)
                      ++||+++.|++++|++|.+.
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=4.7e-27  Score=170.76  Aligned_cols=151  Identities=21%  Similarity=0.288  Sum_probs=118.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      +|+++|++|||||||+++|.+. +...+.++.+...  ..+...  .+.+.+||+||++.+..++..+++.+|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999977 5566667766543  233443  5778999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHH------HHHHHc--CCeEEEEecCCC-----
Q 028303           88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGE------QFAKEN--GLLFLEASARTA-----  153 (210)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~------~~~~~~--~~~~~~~sa~~~-----  153 (210)
                      ++++.++..+..|+..+..... .+.|+++|+||.|+.+...  ..+..      .++.+.  .+.++++||++|     
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~  153 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI  153 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence            9999999999999888765432 5789999999999976432  22222      222222  245788999998     


Q ss_pred             -CCHHHHHHHHHH
Q 028303          154 -QNVEEAFIKTAA  165 (210)
Q Consensus       154 -~~i~~~~~~l~~  165 (210)
                       .|+.+.|+||..
T Consensus       154 ~~g~~~~~~wl~~  166 (167)
T cd04161         154 DPSIVEGLRWLLA  166 (167)
T ss_pred             ccCHHHHHHHHhc
Confidence             899999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=1.9e-26  Score=166.23  Aligned_cols=152  Identities=24%  Similarity=0.417  Sum_probs=117.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      +|+++|++|+|||||+++|.+..+... .++.+.+.  ..+... ..+.+.+||+||++.+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999887543 44544333  223333 35789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHH------HHcCCeEEEEecCCCCCHHHHH
Q 028303           88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFA------KENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      ++++.++.....|+..+..... .+.|+++|+||+|+...  ...+++....      ...+++++++||+++.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            9999988888888777654322 57999999999998642  2233333222      1123568999999999999999


Q ss_pred             HHHHH
Q 028303          161 IKTAA  165 (210)
Q Consensus       161 ~~l~~  165 (210)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=3e-26  Score=167.61  Aligned_cols=158  Identities=28%  Similarity=0.451  Sum_probs=125.5

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      .+..++|+++|+.||||||+++++....... ..||.+.+  ...+.+.+  +.+.+||.+|+..+...|..+++.+|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence            4678999999999999999999999765432 34444433  33444544  6789999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------cCCeEEEEecCCCCC
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------NGLLFLEASARTAQN  155 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~  155 (210)
                      |||+|+++.+.+......+..+..... .+.|+++++||.|+.+  ....+++......      ..+.++.+|+.+|+|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            999999999888888877777655432 5799999999999865  4456666654432      234588999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          156 VEEAFIKTAAKI  167 (210)
Q Consensus       156 i~~~~~~l~~~~  167 (210)
                      +.+.|+||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999998864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=2.6e-26  Score=165.23  Aligned_cols=151  Identities=22%  Similarity=0.324  Sum_probs=119.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      ||+++|++|||||||++++.+... ..+.++.+.+.  ..+.+.  .+.+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998873 33444444433  233343  4679999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHHH
Q 028303           88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      ++++.++.....|+..+.... ..+.|+++++||+|+.+..  ..++..+.+..     ..++++++|+++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999888887775543 3578999999999986533  33444443332     346799999999999999999


Q ss_pred             HHHH
Q 028303          162 KTAA  165 (210)
Q Consensus       162 ~l~~  165 (210)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=5.5e-26  Score=163.59  Aligned_cols=151  Identities=23%  Similarity=0.326  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      ||+++|++++|||||+++|....+.. +.++.+.+..  .+..  ....+++|||||++.+...+..+++.+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998776643 3444444332  2333  35689999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHh-hcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHH
Q 028303           88 ITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      ++++.++.....++..+.. ....+.|+++|+||+|+.+..  ...++.....     ..+.+++++||+++.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9998887776666554433 222478999999999986432  2233322221     1234699999999999999999


Q ss_pred             HHHH
Q 028303          162 KTAA  165 (210)
Q Consensus       162 ~l~~  165 (210)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=1e-25  Score=175.71  Aligned_cols=139  Identities=24%  Similarity=0.508  Sum_probs=121.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC-------------EEEEEEEEecCCcchhhhh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-------------RPIKLQIWDTAGQESFRSI   71 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~~~~   71 (210)
                      ..+||+|+|+.|+|||||+++|.+..+...+.+|.+.++....+.+++             ..+.+.||||+|++.+..+
T Consensus        20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL   99 (334)
T PLN00023         20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC   99 (334)
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence            468999999999999999999999999888889998888777676642             4688999999999999999


Q ss_pred             hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcC------------CCCeEEEEEecCCCCCCC---C---CCHHH
Q 028303           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN------------PNMSIMLVGNKCDLAHRR---A---VSKEE  133 (210)
Q Consensus        72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~~~~  133 (210)
                      +..+++.+|++|+|||+++..++.++..|+..+.....            .++|+++|+||+|+.+..   .   +..++
T Consensus       100 ~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~  179 (334)
T PLN00023        100 RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDA  179 (334)
T ss_pred             hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHH
Confidence            99999999999999999999999999999999976531            258999999999996542   2   35788


Q ss_pred             HHHHHHHcCC
Q 028303          134 GEQFAKENGL  143 (210)
Q Consensus       134 ~~~~~~~~~~  143 (210)
                      +++++.+.++
T Consensus       180 a~~~A~~~g~  189 (334)
T PLN00023        180 ARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHcCC
Confidence            9999998764

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.94  E-value=1.6e-25  Score=165.11  Aligned_cols=156  Identities=21%  Similarity=0.262  Sum_probs=121.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+++|++|+|||||+++|.+..+.. +.++.+.+.  ..+.+.  .+.+.+||+||++.+...+..+++.+|+++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            567999999999999999999999886643 233433322  223343  467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEec
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------------NGLLFLEASA  150 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa  150 (210)
                      +|+|++++.++.....++..+.... ..+.|+++|+||.|+..  ..+.+++.+.+..            ....++++||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            9999999998888887777665432 25789999999999864  3455665554321            1234899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028303          151 RTAQNVEEAFIKTAAK  166 (210)
Q Consensus       151 ~~~~~i~~~~~~l~~~  166 (210)
                      +++.|+++++++|...
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=4.6e-25  Score=158.11  Aligned_cols=151  Identities=22%  Similarity=0.335  Sum_probs=119.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEEC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI   88 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~   88 (210)
                      |+++|++|+|||||+++|.+..+...+.++.+.....  +...  .+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7999999999999999999999888888777665543  2333  37899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHHHH
Q 028303           89 TRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        89 ~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      ++..++.....|+..+.... ..+.|+++|+||.|+.+...  .++.....     ....++++++|++++.|+++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence            99988888777776664432 25789999999999865322  22222222     122367899999999999999999


Q ss_pred             HHH
Q 028303          163 TAA  165 (210)
Q Consensus       163 l~~  165 (210)
                      |.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=1e-24  Score=160.06  Aligned_cols=154  Identities=25%  Similarity=0.293  Sum_probs=112.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCC------CceeEEEEEEEE--E---CCEEEEEEEEecCCcchhh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDL------TIGVEFGARMVT--I---DGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~--~---~~~~~~~~i~D~~G~~~~~   69 (210)
                      +|+++|++++|||||+++|++..       +...+.+      +.+.+.......  +   ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       1111212      112333333222  2   5667889999999999999


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC---eEE
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL---LFL  146 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~  146 (210)
                      ..+..+++.+|++|+|+|++++.+......|....    ..++|+++|+||+|+.+..  ..+...+++...++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999876666655554322    1368999999999986422  12223445555555   389


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q 028303          147 EASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       147 ~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      ++||++|.|++++|++|.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.93  E-value=1.5e-24  Score=157.49  Aligned_cols=156  Identities=22%  Similarity=0.184  Sum_probs=107.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh---------hhhHHhhc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR---------SITRSYYR   77 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~   77 (210)
                      .+|+++|++|+|||||+++|.+..+.....+..+........  ....+.+.+|||||.....         ........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999999987643322222222222222  2235689999999974211         11111223


Q ss_pred             cccEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303           78 GAAGALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (210)
Q Consensus        78 ~~d~~i~V~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  155 (210)
                      .+|++++|+|+++..+  +.....|+..+.... .+.|+++|+||+|+.+.....  +..++......+++++||+++.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence            4689999999998654  355556777765443 368999999999996543322  24455555667899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          156 VEEAFIKTAAKI  167 (210)
Q Consensus       156 i~~~~~~l~~~~  167 (210)
                      ++++|++|.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=6.5e-24  Score=151.72  Aligned_cols=158  Identities=33%  Similarity=0.493  Sum_probs=126.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+++|++|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+.+.++.++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999987667777777777777677777668899999999999999999999999999999


Q ss_pred             EECCCh-hhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           86 YDITRR-ETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        86 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      +|.... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||+++.|+.+++++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999876 5555544 56655555444478999999999996543 22233333334445679999999999999999986


Q ss_pred             H
Q 028303          164 A  164 (210)
Q Consensus       164 ~  164 (210)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            4

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=1.1e-24  Score=163.20  Aligned_cols=157  Identities=19%  Similarity=0.174  Sum_probs=113.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch---------hhhhhHH
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRS   74 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~   74 (210)
                      ++.++|+|+|++|||||||++++++........+..+.+.....+.+++. ..+.+|||||...         +... ..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence            45689999999999999999999998654333333333333334444443 3688999999732         1111 12


Q ss_pred             hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 028303           75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ  154 (210)
Q Consensus        75 ~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  154 (210)
                      .+..+|++++|+|++++.+......|...+......+.|+++|+||+|+.+....     ...+.....+++++||+++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence            3568999999999999888877777777666554456899999999998653321     13444556789999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028303          155 NVEEAFIKTAAKI  167 (210)
Q Consensus       155 ~i~~~~~~l~~~~  167 (210)
                      |+++++++|.+++
T Consensus       192 gi~~l~~~L~~~~  204 (204)
T cd01878         192 GLDELLEAIEELL  204 (204)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999987753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.93  E-value=5.4e-24  Score=147.34  Aligned_cols=161  Identities=22%  Similarity=0.362  Sum_probs=127.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      +..++|+++|..||||||++++|.+... ....|+.+  +..+++.++  .+++++||.+|+...+..|.+|+..+|++|
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~~--~~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEec--ceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            5689999999999999999999998762 33334433  444444444  578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHH------HHHHHHcCCeEEEEecCCCCCH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEG------EQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                      +|+|.+++..++.....+..+.... -.+.|++++.||.|+..  ..+.+++      ..+++...++++.||+.+|+++
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l  166 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL  166 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence            9999999988888776665554322 25789999999999963  2333333      3344566788999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028303          157 EEAFIKTAAKILQNI  171 (210)
Q Consensus       157 ~~~~~~l~~~~~~~~  171 (210)
                      .+.++||+..+.+++
T Consensus       167 ~~gidWL~~~l~~r~  181 (185)
T KOG0073|consen  167 LEGIDWLCDDLMSRL  181 (185)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988754

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=2.1e-24  Score=156.95  Aligned_cols=157  Identities=18%  Similarity=0.149  Sum_probs=110.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc----hhhhhhHHh---hcccc
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----SFRSITRSY---YRGAA   80 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~---~~~~d   80 (210)
                      +|+++|.+|+|||||+++|.+........+..+.......+.+++ ...+.+|||||..    ....+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            589999999999999999997654221112112222222233333 2478899999963    211222333   44699


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCeEEEEecCCCCCH
Q 028303           81 GALLVYDITRR-ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNV  156 (210)
Q Consensus        81 ~~i~V~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i  156 (210)
                      ++++|+|++++ .++..+..|...+.....  .+.|+++|+||+|+...... .+....+... ...+++++|++++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 788888888888766532  36899999999998654433 3344455555 3678999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          157 EEAFIKTAAK  166 (210)
Q Consensus       157 ~~~~~~l~~~  166 (210)
                      +++|++|.++
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=2.8e-24  Score=155.19  Aligned_cols=152  Identities=20%  Similarity=0.170  Sum_probs=105.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      +.|+++|++++|||||+++|++..   +.....++.+.+.....+.+.. ...+.+|||||++.+......+++.+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999999643   2222233334444444444442 357899999999988877777889999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHH---cCCeEEEEecCCCCC
Q 028303           84 LVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKE---NGLLFLEASARTAQN  155 (210)
Q Consensus        84 ~V~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~sa~~~~~  155 (210)
                      +|+|+++   ..+...+    ..+....  ..|+++++||+|+.+...  ...++..+.+..   .+.+++++|++++.|
T Consensus        80 ~V~d~~~~~~~~~~~~~----~~~~~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHL----EILELLG--IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHH----HHHHHhC--CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   3332222    2222221  249999999999865321  112344444444   357899999999999


Q ss_pred             HHHHHHHHHH
Q 028303          156 VEEAFIKTAA  165 (210)
Q Consensus       156 i~~~~~~l~~  165 (210)
                      ++++++.+.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=1.2e-23  Score=167.38  Aligned_cols=163  Identities=15%  Similarity=0.080  Sum_probs=119.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch----hhhh---hHHhhcc
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSI---TRSYYRG   78 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~   78 (210)
                      ...|+|+|.|+||||||+++|++........+.++.......+.+.. ...+.+||+||.-+    ...+   +...+..
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            35689999999999999999998653322223334444444444432 24588999999632    1122   3334567


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303           79 AAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus        79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                      ++++++|+|+++.++++.+..|...+..+..  .+.|+++|+||+|+.+......+....++...+.+++++||+++.|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            9999999999988788888899888876543  46899999999999754433334455555556688999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          157 EEAFIKTAAKILQ  169 (210)
Q Consensus       157 ~~~~~~l~~~~~~  169 (210)
                      ++++++|.+.+..
T Consensus       317 ~eL~~~L~~~l~~  329 (335)
T PRK12299        317 DELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>cd04155 Arl3 Arl3 subfamily

Probab=99.92  E-value=1.7e-23  Score=152.63  Aligned_cols=154  Identities=22%  Similarity=0.342  Sum_probs=114.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+++|++|+|||||++++.+..+.. ..++.+.+.  ..+..++  ..+.+||+||+..+...+..+++.+|++++
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            46899999999999999999999876533 344444332  2334444  568899999999888888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVEE  158 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~  158 (210)
                      |+|+++..++.....++..+... ...++|+++++||+|+.+..  ..+++.+......     .+++++||++++|+++
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~  165 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE  165 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHH
Confidence            99999988888777776655433 22478999999999985432  2233322221111     2478999999999999


Q ss_pred             HHHHHHH
Q 028303          159 AFIKTAA  165 (210)
Q Consensus       159 ~~~~l~~  165 (210)
                      +|++|.+
T Consensus       166 ~~~~l~~  172 (173)
T cd04155         166 GMNWVCK  172 (173)
T ss_pred             HHHHHhc
Confidence            9999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=6.8e-23  Score=155.07  Aligned_cols=169  Identities=40%  Similarity=0.561  Sum_probs=136.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+++|++|+|||||+++|.+..+...+.++.+..+...........+.+.+|||+|++.+..++..++..++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999999999888777777776666688899999999999999999999999999999


Q ss_pred             EECCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC------------CCHHHHHHHHHHc---CCeEEEEe
Q 028303           86 YDITRR-ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA------------VSKEEGEQFAKEN---GLLFLEAS  149 (210)
Q Consensus        86 ~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~---~~~~~~~s  149 (210)
                      +|.++. .+.+....|...+......+.|+++++||+|+.....            .............   ...++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            999994 4555566788787776655799999999999976532            2222222222222   23389999


Q ss_pred             cC--CCCCHHHHHHHHHHHHHHHHhhc
Q 028303          150 AR--TAQNVEEAFIKTAAKILQNIQEG  174 (210)
Q Consensus       150 a~--~~~~i~~~~~~l~~~~~~~~~~~  174 (210)
                      ++  ++.++.++|..+...+.......
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~  191 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEKL  191 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence            99  99999999999999887665443

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=7e-24  Score=149.95  Aligned_cols=134  Identities=21%  Similarity=0.208  Sum_probs=98.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc-----hhhhhhHHhhccccEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-----SFRSITRSYYRGAAGA   82 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~   82 (210)
                      ||+++|++|+|||||+++|.+..+.  +.++.+.+       +..     .+|||||..     .+..+. ..++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            7999999999999999999987652  22332221       211     589999972     233333 357899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFI  161 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~  161 (210)
                      ++|||++++.++.. ..|...+      ..|+++|+||+|+.+. ....+++.+++...+. +++++||+++.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999888654 2333221      2499999999998653 3455667777777765 799999999999999999


Q ss_pred             HHH
Q 028303          162 KTA  164 (210)
Q Consensus       162 ~l~  164 (210)
                      +|.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=2.4e-23  Score=151.06  Aligned_cols=157  Identities=17%  Similarity=0.157  Sum_probs=110.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      .|+|+|++|+|||||+++|....+......+.+.+.....+... +....+.+|||||++.+...+...++.+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999888766544444444443434333 13567899999999999888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCH-HHHHHHHH------HcCCeEEEEecCCCCCHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK-EEGEQFAK------ENGLLFLEASARTAQNVEEA  159 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~sa~~~~~i~~~  159 (210)
                      |+++....... ..+..+..   .+.|+++|+||+|+........ +....+..      ....+++++|++++.|+.++
T Consensus        82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            99885322221 12222222   3689999999999864321111 11111111      12357999999999999999


Q ss_pred             HHHHHHHHH
Q 028303          160 FIKTAAKIL  168 (210)
Q Consensus       160 ~~~l~~~~~  168 (210)
                      +++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=8e-24  Score=157.37  Aligned_cols=162  Identities=20%  Similarity=0.199  Sum_probs=113.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh--CCCCCCC------------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD--KRFQPVH------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSIT   72 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   72 (210)
                      -+|+++|.+++|||||+++|+.  ..+...+            ..+.+.+.......++...+.+.+|||||++.+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999997  4443332            1223444554545555567789999999999999999


Q ss_pred             HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHHH-------cCCe
Q 028303           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAKE-------NGLL  144 (210)
Q Consensus        73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~~  144 (210)
                      ..+++.+|++++|+|+++.. ......++..+..   .++|+++|+||+|+.+... ...+++.+++..       .+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2223333333322   3789999999999964332 123445555432       3678


Q ss_pred             EEEEecCCCCCHHHH------HHHHHHHHHHHHh
Q 028303          145 FLEASARTAQNVEEA------FIKTAAKILQNIQ  172 (210)
Q Consensus       145 ~~~~sa~~~~~i~~~------~~~l~~~~~~~~~  172 (210)
                      ++++||++|.|+.+.      +++|++++....|
T Consensus       159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~  192 (194)
T cd01891         159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP  192 (194)
T ss_pred             EEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence            999999999887544      4455555555444

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=8.8e-23  Score=144.56  Aligned_cols=153  Identities=49%  Similarity=0.828  Sum_probs=121.9

Q ss_pred             EEcCCCCCHHHHHHHHHhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECC
Q 028303           11 IIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT   89 (210)
Q Consensus        11 v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~   89 (210)
                      |+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+...++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998877 44555554 6666666777777889999999999988888888999999999999999


Q ss_pred             ChhhHHHHHHHH-HHHHhhcCCCCeEEEEEecCCCCCCCCCCHHH-HHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           90 RRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVSKEE-GEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        90 ~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      ++.+......|+ .........+.|+++++||+|+.......... ..........+++++|+.++.++.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999888888773 22233344689999999999986544333222 3445555678899999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=5.6e-23  Score=147.56  Aligned_cols=148  Identities=20%  Similarity=0.221  Sum_probs=109.8

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh------hhHHhhc--cccEE
Q 028303           11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS------ITRSYYR--GAAGA   82 (210)
Q Consensus        11 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~d~~   82 (210)
                      |+|++|+|||||++++.+..+.....++.+.+.....+.+++  ..+.+|||||+..+..      ++..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998865544445545555555566665  4688999999876554      3455554  89999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      ++|+|+.++...   ..++..+..   .+.|+++|+||+|+.+...+.. +...+....+.+++++|+.++.|++++++.
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            999999886542   233333332   3689999999999976543332 345666677889999999999999999999


Q ss_pred             HHHHH
Q 028303          163 TAAKI  167 (210)
Q Consensus       163 l~~~~  167 (210)
                      |.+.+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            88763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=1.6e-23  Score=148.38  Aligned_cols=148  Identities=20%  Similarity=0.252  Sum_probs=105.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc------hhhhhhHHhh--cc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE------SFRSITRSYY--RG   78 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~~~~~~~~~--~~   78 (210)
                      ++|+++|.|++|||||+|+|++........+..+.+.....+.+.+  ..+.++|+||--      ........++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999986554455556777766677776  457899999931      1223334443  68


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303           79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (210)
Q Consensus        79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  158 (210)
                      .|++++|+|+++.+.--   .....+..   .++|+++++||+|...+..... ....+.+..+++++++||+++.|+++
T Consensus        79 ~D~ii~VvDa~~l~r~l---~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL---YLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH---HHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHHHH---HHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            99999999998754322   22333333   3799999999999865544433 35667777899999999999999999


Q ss_pred             HHHHH
Q 028303          159 AFIKT  163 (210)
Q Consensus       159 ~~~~l  163 (210)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.91  E-value=6.4e-24  Score=145.74  Aligned_cols=164  Identities=27%  Similarity=0.489  Sum_probs=145.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||.++|++..|||||+-++.++.+.+.+..+.+..+..+++.+.+..+.+.+||.+|++++....+...+.+-+++|+
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm   99 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM   99 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC-----CHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-----SKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      ||++.+.++..+..|+.+.+...+..+|+ +|++|.|..-.-..     ...+++.+++-.+++++++|+..+.|+.++|
T Consensus       100 FDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF  178 (205)
T KOG1673|consen  100 FDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF  178 (205)
T ss_pred             EecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence            99999999999999999998887766665 78999997322111     1245778888899999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          161 IKTAAKILQN  170 (210)
Q Consensus       161 ~~l~~~~~~~  170 (210)
                      ..+..++...
T Consensus       179 K~vlAklFnL  188 (205)
T KOG1673|consen  179 KIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHhCC
Confidence            9988877653

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=3.7e-23  Score=172.57  Aligned_cols=180  Identities=20%  Similarity=0.153  Sum_probs=120.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcch--------hhhhhHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY   75 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   75 (210)
                      ...+|+|+|.+|+|||||+++|++..... ...+..+.+.......+.+.  .+.+|||||.+.        +...+..+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            34789999999999999999999876532 23333344444444455553  578999999762        33445667


Q ss_pred             hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 028303           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQ  154 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~  154 (210)
                      ++.+|++|+|+|++++.+... ..+...+..   .+.|+++|+||+|+....    .+..++. ..++ ..+++||++|.
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~----~~~~~~~-~~g~~~~~~iSA~~g~  185 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE----ADAAALW-SLGLGEPHPVSALHGR  185 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc----hhhHHHH-hcCCCCeEEEEcCCCC
Confidence            899999999999998765433 233333332   378999999999985421    1122222 2232 35799999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccccccccCCcccccCCCCCCC
Q 028303          155 NVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPS  195 (210)
Q Consensus       155 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (210)
                      |++++|+.|.+.+.........+......+.+|.++.|+++
T Consensus       186 gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSS  226 (472)
T PRK03003        186 GVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSS  226 (472)
T ss_pred             CcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHH
Confidence            99999999998875522211111223347778888877664

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.90  E-value=1.7e-22  Score=161.96  Aligned_cols=154  Identities=21%  Similarity=0.192  Sum_probs=111.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc---------chhhhhhHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ---------ESFRSITRSY   75 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~   75 (210)
                      ..++|+++|.+|+|||||+|+|++........+..+.+.....+.+++. ..+.+|||+|.         +.+.. ....
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~-tle~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRA-TLEE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHH-HHHH
Confidence            4589999999999999999999998654333333344555555666432 46889999997         22222 2235


Q ss_pred             hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  155 (210)
                      +..+|++++|+|++++.+...+..|...+......+.|+++|+||+|+....     +.... .....+++++||+++.|
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg~G  339 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTGEG  339 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCCCC
Confidence            7899999999999998887777666666655444478999999999985421     12111 12224689999999999


Q ss_pred             HHHHHHHHHHH
Q 028303          156 VEEAFIKTAAK  166 (210)
Q Consensus       156 i~~~~~~l~~~  166 (210)
                      ++++++.|.+.
T Consensus       340 I~eL~~~I~~~  350 (351)
T TIGR03156       340 LDLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=8.7e-23  Score=144.77  Aligned_cols=159  Identities=20%  Similarity=0.320  Sum_probs=128.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+++|-.++||||++.+|........ .||.+.....  +.+.  ++.+++||.+|++.++.+|..|+++.+++|
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~--v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET--VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE--EEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            4568999999999999999999987776555 6665554433  3333  688999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~  157 (210)
                      ||+|.++++.+...+..+..+..... .+.|+++++||.|++.  ..+..++.+......     -.+..++|.+|+|+.
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~  167 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence            99999999999998888777766655 6899999999999976  344555555444332     336788999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQ  169 (210)
Q Consensus       158 ~~~~~l~~~~~~  169 (210)
                      +.+++|.+.+..
T Consensus       168 egl~wl~~~~~~  179 (181)
T KOG0070|consen  168 EGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHhc
Confidence            999999887754

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.90  E-value=3.2e-22  Score=159.13  Aligned_cols=160  Identities=17%  Similarity=0.128  Sum_probs=114.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh----hhhhHH---hhcc
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----RSITRS---YYRG   78 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~---~~~~   78 (210)
                      ...|+|+|.+++|||||+++|+.........+.++.......+.+++ ...+.+||+||..+.    ..+...   .+..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            36799999999999999999998753322222223444444444543 356889999996421    123333   3457


Q ss_pred             ccEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCC
Q 028303           79 AAGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA  153 (210)
Q Consensus        79 ~d~~i~V~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  153 (210)
                      +|++++|+|+++.   .+++.+..|.+.+..+..  .+.|+++|+||+|+.+... ..+..+.+.+..+.+++++||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999976   677778888777765532  4689999999999865432 223344555566788999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028303          154 QNVEEAFIKTAAKI  167 (210)
Q Consensus       154 ~~i~~~~~~l~~~~  167 (210)
                      .++++++++|.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR00436 era GTP-binding protein Era

Probab=99.90  E-value=2.7e-22  Score=156.33  Aligned_cols=153  Identities=19%  Similarity=0.138  Sum_probs=103.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh--------hhhHHhhccc
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--------SITRSYYRGA   79 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~   79 (210)
                      +|+|+|.+|+|||||+|+|++.........+.++......+...+ ..++.+|||||.....        .....++..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            689999999999999999999876543332212221222222222 3468899999965321        1234567899


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHH
Q 028303           80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEE  158 (210)
Q Consensus        80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~  158 (210)
                      |++++|+|+++..+..  ..++..+..   .+.|+++|+||+|+.+... ..+....+...... +++++||++|.|+++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            9999999999876553  233333332   3689999999999863221 12333344444443 789999999999999


Q ss_pred             HHHHHHHHH
Q 028303          159 AFIKTAAKI  167 (210)
Q Consensus       159 ~~~~l~~~~  167 (210)
                      +++.|.+.+
T Consensus       155 L~~~l~~~l  163 (270)
T TIGR00436       155 LAAFIEVHL  163 (270)
T ss_pred             HHHHHHHhC
Confidence            999987765

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=1.8e-22  Score=138.43  Aligned_cols=114  Identities=36%  Similarity=0.676  Sum_probs=89.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      ||+|+|++|+|||||+++|.+..+.  .....+.+.+.......+......+.+||++|++.+...+...+..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  23334445555555667777777799999999998888888889999999999


Q ss_pred             EECCChhhHHHHHHH---HHHHHhhcCCCCeEEEEEecCC
Q 028303           86 YDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCD  122 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D  122 (210)
                      ||++++.++.++..+   +..+... ..++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence            999999999887555   4444443 34699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK04213 GTP-binding protein; Provisional

Probab=99.89  E-value=6.2e-23  Score=153.38  Aligned_cols=151  Identities=21%  Similarity=0.208  Sum_probs=101.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC-----------cchhhhhhH
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG-----------QESFRSITR   73 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~   73 (210)
                      ..++|+++|++|+|||||+++|.+..+.....++  .+.....+.+.    .+.+|||||           ++.+...+.
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            4689999999999999999999988765444443  33333333333    478999999           455555555


Q ss_pred             Hhhc----cccEEEEEEECCChhhH-H---------HHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 028303           74 SYYR----GAAGALLVYDITRRETF-N---------HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK  139 (210)
Q Consensus        74 ~~~~----~~d~~i~V~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  139 (210)
                      .++.    .++++++|+|.+..... +         .-......+.   ..++|+++|+||+|+.+..   .+...++..
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~  155 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIAE  155 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHHH
Confidence            5543    45788999998653221 0         0011122222   2378999999999986433   234455555


Q ss_pred             HcCC---------eEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          140 ENGL---------LFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       140 ~~~~---------~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      ..+.         +++++||+++ |+++++++|.+.+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence            5554         4799999999 99999999987653

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.89  E-value=2.4e-22  Score=146.81  Aligned_cols=155  Identities=21%  Similarity=0.212  Sum_probs=106.1

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh----hhh---hHHhhccccEEE
Q 028303           11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----RSI---TRSYYRGAAGAL   83 (210)
Q Consensus        11 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~~d~~i   83 (210)
                      ++|++|+|||||+++|.+........+..+.+.....+.++. ...+.+|||||....    ..+   ....++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998865222222222333333333441 346789999996321    122   234577899999


Q ss_pred             EEEECCCh------hhHHHHHHHHHHHHhhcC-------CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEec
Q 028303           84 LVYDITRR------ETFNHLSSWLEDARQHAN-------PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA  150 (210)
Q Consensus        84 ~V~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  150 (210)
                      +|+|++++      .++.....|...+.....       .+.|+++|+||+|+....................+++++|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999988      467777777776654432       36899999999998654433222223344445677999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028303          151 RTAQNVEEAFIKTAAK  166 (210)
Q Consensus       151 ~~~~~i~~~~~~l~~~  166 (210)
                      +++.|++++++.+...
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.89  E-value=1.9e-23  Score=142.10  Aligned_cols=158  Identities=20%  Similarity=0.309  Sum_probs=128.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+.+.++|-.++|||||++....+.+.+.-.++.+...    ..+..+.+.+.+||.||+..+...|..|.+.+++++||
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            47889999999999999999998888888788777655    45666788999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHH-----HHHHcCCeEEEEecCCCCCHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQ-----FAKENGLLFLEASARTAQNVEEA  159 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~sa~~~~~i~~~  159 (210)
                      +|+.+++.+...+..+..+..... .++|+++++||.|++.  ..+......     ......+.+|.+|+++..|++-+
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~  173 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT  173 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence            999999988888877777765544 6899999999999865  333222211     11123456899999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          160 FIKTAAKILQ  169 (210)
Q Consensus       160 ~~~l~~~~~~  169 (210)
                      .++|+++-..
T Consensus       174 ~~Wli~hsk~  183 (186)
T KOG0075|consen  174 LDWLIEHSKS  183 (186)
T ss_pred             HHHHHHHhhh
Confidence            9999987543

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.89  E-value=5.3e-22  Score=142.14  Aligned_cols=146  Identities=23%  Similarity=0.215  Sum_probs=105.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh--------hhHHhhc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYR   77 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   77 (210)
                      ++|+++|++|+|||||++++.+..... ...++.+.......+..+  ...+.+|||||...+..        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999876432 112222333333334444  35688999999754432        2334667


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (210)
Q Consensus        78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  157 (210)
                      .+|++++|+|++++.+......+..      ..+.|+++|+||+|+.+....       .......+++++|++++.|+.
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            8999999999998777666544332      236899999999998654432       334456789999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          158 EAFIKTAAKI  167 (210)
Q Consensus       158 ~~~~~l~~~~  167 (210)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999987754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK15494 era GTPase Era; Provisional

Probab=99.89  E-value=5.8e-22  Score=158.67  Aligned_cols=155  Identities=22%  Similarity=0.286  Sum_probs=105.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEecCCcch-hhhh-------hHH
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSI-------TRS   74 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~-------~~~   74 (210)
                      .+.++|+++|.+|+|||||+++|.+..+...... ..+.......+..++  .++.+|||||... +..+       ...
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            4567999999999999999999998877532221 112223333344554  4678999999743 2221       123


Q ss_pred             hhccccEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CeEEEEecC
Q 028303           75 YYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASAR  151 (210)
Q Consensus        75 ~~~~~d~~i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~  151 (210)
                      .+..+|++++|+|..+.  +.... .|+..+...   +.|.++|+||+|+.+.   ...++.+++....  ..++++||+
T Consensus       128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            46799999999998763  33332 344444332   5678899999998643   2455666665543  579999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 028303          152 TAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       152 ~~~~i~~~~~~l~~~~~  168 (210)
                      ++.|++++|++|.+.+.
T Consensus       200 tg~gv~eL~~~L~~~l~  216 (339)
T PRK15494        200 SGKNIDGLLEYITSKAK  216 (339)
T ss_pred             CccCHHHHHHHHHHhCC
Confidence            99999999999877653

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=5.7e-22  Score=142.60  Aligned_cols=144  Identities=17%  Similarity=0.155  Sum_probs=101.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc----hhhhhhHHhhccccEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----SFRSITRSYYRGAAGAL   83 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i   83 (210)
                      +|+++|++++|||||+++|.+....  ...+.+       ..+...    .+|||||..    .+.......++.+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            7999999999999999998865321  111111       222222    269999972    22222233478999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC--eEEEEecCCCCCHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL--LFLEASARTAQNVEEAFI  161 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~sa~~~~~i~~~~~  161 (210)
                      +|+|+++..++.  ..|+..+    ..+.|+++++||.|+.+   ...+.+.+++...+.  +++++|++++.|++++|+
T Consensus        70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            999999886642  2333332    23679999999999854   234566777777764  899999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028303          162 KTAAKILQNIQE  173 (210)
Q Consensus       162 ~l~~~~~~~~~~  173 (210)
                      +|.+.+.....-
T Consensus       141 ~l~~~~~~~~~~  152 (158)
T PRK15467        141 YLASLTKQEEAG  152 (158)
T ss_pred             HHHHhchhhhcc
Confidence            998887666543

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=4.3e-22  Score=147.84  Aligned_cols=158  Identities=16%  Similarity=0.149  Sum_probs=102.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC----CCCCC---CCCCceeEEEEEEEEEC------------CEEEEEEEEecCCcch
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK----RFQPV---HDLTIGVEFGARMVTID------------GRPIKLQIWDTAGQES   67 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~----~~~~~---~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~   67 (210)
                      ++|+++|++++|||||+++|+..    .+...   ..+..+.......+.+.            +..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999973    11111   11122222222223332            3357899999999976


Q ss_pred             hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHH------
Q 028303           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAK------  139 (210)
Q Consensus        68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~------  139 (210)
                      +........+.+|++++|+|+.++........+.  +...  .+.|+++++||+|+.....  ...+++.+.+.      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5554445567789999999998854333322222  1121  2579999999999864221  11223332221      


Q ss_pred             -HcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          140 -ENGLLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       140 -~~~~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                       ..+++++++||+++.|+++++++|..++.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             13578999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.89  E-value=3.5e-21  Score=131.99  Aligned_cols=167  Identities=25%  Similarity=0.346  Sum_probs=135.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCC--CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-hhhhHHhhccccE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP--VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-RSITRSYYRGAAG   81 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~   81 (210)
                      ...||+|+|..++|||+++..|.-.....  +..+|....+....-+-.+..-.+.|+||.|.... ..+-..|+..+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            36899999999999999999988655433  44455444333332233455668999999997766 6678889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      +++||+..+++||+.+...-..+..... ..+|+++++||.|+.+...++.+-+..|++...+..+++++.+...+-+.|
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf  167 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF  167 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence            9999999999999988776666655443 679999999999999888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028303          161 IKTAAKILQNI  171 (210)
Q Consensus       161 ~~l~~~~~~~~  171 (210)
                      .++...+.+-+
T Consensus       168 ~~l~~rl~~pq  178 (198)
T KOG3883|consen  168 TYLASRLHQPQ  178 (198)
T ss_pred             HHHHHhccCCc
Confidence            99988775433

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.88  E-value=1.1e-21  Score=144.86  Aligned_cols=156  Identities=22%  Similarity=0.182  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc--------------eeEEEEEEEEECCEEEEEEEEecCCcchhhhhhH
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--------------GVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR   73 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   73 (210)
                      +|+|+|.+|+|||||+++|.+...........              +.+.......+......+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            48999999999999999999887655432211              1112222222222346789999999998888889


Q ss_pred             HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHH-----------
Q 028303           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKE-----------  140 (210)
Q Consensus        74 ~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~-----------  140 (210)
                      .+++.+|++++|+|+.++...... .++..+..   .+.|+++++||+|+......  ..+++.+.+..           
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT  156 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence            999999999999999886543322 33333332   47899999999998652221  12333333333           


Q ss_pred             ---cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          141 ---NGLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       141 ---~~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                         ...+++++|++++.|+++++++|.+.+
T Consensus       157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence               346799999999999999999988775

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.88  E-value=3.1e-21  Score=158.88  Aligned_cols=154  Identities=21%  Similarity=0.174  Sum_probs=114.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh--------hHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI--------TRSY   75 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   75 (210)
                      ..++|+++|++|+|||||+|+|++..... ...+..+.+.....+.+++.  .+.+|||||...+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            45899999999999999999999875422 22233355566666667664  4689999998654322        2457


Q ss_pred             hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  155 (210)
                      ++.+|++++|+|++++.+....  |+..+..   .+.|+++|+||+|+.+.      +...++...+.+++++|+++ .|
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence            7899999999999998776654  5554432   36899999999998543      12344556677899999998 69


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 028303          156 VEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       156 i~~~~~~l~~~~~~~~~  172 (210)
                      ++++|+.|.+.+.....
T Consensus       348 I~~~~~~L~~~i~~~~~  364 (442)
T TIGR00450       348 IKALVDLLTQKINAFYS  364 (442)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999998876653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=2.3e-21  Score=164.91  Aligned_cols=156  Identities=23%  Similarity=0.267  Sum_probs=114.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCC------CceeEEEEEEEE--E---CCEEEEEEEEecCCcch
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDL------TIGVEFGARMVT--I---DGRPIKLQIWDTAGQES   67 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~--~---~~~~~~~~i~D~~G~~~   67 (210)
                      .-+|+++|+.++|||||+++|+...       +...+..      ..+.++....+.  +   ++..+.+++|||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            3589999999999999999998642       2222221      124444433332  2   45668999999999999


Q ss_pred             hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC---e
Q 028303           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL---L  144 (210)
Q Consensus        68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  144 (210)
                      |...+..+++.+|++|+|+|++++.+......|+..+.    .++|+++|+||+|+.+..  ..+...++....++   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999999776666666554432    368999999999986422  12223344444454   4


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHH
Q 028303          145 FLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       145 ~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      ++++||++|.|++++|+.|.+.+
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhC
Confidence            89999999999999999988765

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01894 EngA1 EngA1 subfamily

Probab=99.88  E-value=1.1e-21  Score=140.54  Aligned_cols=145  Identities=19%  Similarity=0.112  Sum_probs=99.1

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCC--CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh--------hhHHhhccc
Q 028303           10 IIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYRGA   79 (210)
Q Consensus        10 ~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~   79 (210)
                      +++|.+|+|||||+++|.+....  .... ..+.+........++  ..+.+|||||...+..        .....++.+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTP-GVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCC-CceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            47999999999999999987522  2222 223333333333443  5688999999876443        334567889


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHH
Q 028303           80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEE  158 (210)
Q Consensus        80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~  158 (210)
                      |++++|+|+.++.+.... .+...+..   .+.|+++|+||+|+.+....     ...+...+. +++++|++++.|+++
T Consensus        78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~  148 (157)
T cd01894          78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGD  148 (157)
T ss_pred             CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHH
Confidence            999999999876543332 12222222   26899999999998653321     223334455 689999999999999


Q ss_pred             HHHHHHHH
Q 028303          159 AFIKTAAK  166 (210)
Q Consensus       159 ~~~~l~~~  166 (210)
                      ++++|.++
T Consensus       149 l~~~l~~~  156 (157)
T cd01894         149 LLDAILEL  156 (157)
T ss_pred             HHHHHHhh
Confidence            99999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.88  E-value=6.3e-21  Score=161.53  Aligned_cols=153  Identities=21%  Similarity=0.209  Sum_probs=113.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ...+|+++|++++|||||+++|.+..+.....+..+.+.....+.+++.. .+.+|||||++.|..++...+..+|++|+
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            45789999999999999999999988776655555555555555554432 68899999999999999989999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEecCCCCC
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG---------LLFLEASARTAQN  155 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~~~~  155 (210)
                      |+|++++....... .+..+.   ..++|+++++||+|+.+.   ..+++...+...+         .+++++||++|.|
T Consensus       165 VVda~dgv~~qT~e-~i~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       165 VVAADDGVMPQTIE-AISHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEECCCCCCHhHHH-HHHHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            99998743222221 222222   237899999999998642   2344444433222         4699999999999


Q ss_pred             HHHHHHHHHH
Q 028303          156 VEEAFIKTAA  165 (210)
Q Consensus       156 i~~~~~~l~~  165 (210)
                      ++++|++|..
T Consensus       238 I~eLl~~I~~  247 (587)
T TIGR00487       238 IDELLDMILL  247 (587)
T ss_pred             hHHHHHhhhh
Confidence            9999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=3.6e-21  Score=160.65  Aligned_cols=162  Identities=18%  Similarity=0.145  Sum_probs=111.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCc----------chhhhhh-
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----------ESFRSIT-   72 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~-   72 (210)
                      ..++|+++|.+++|||||+++|++.... ....++.+.+.....+.+++..  +.+|||||.          +.+..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            4589999999999999999999988653 2233333444444555666654  579999995          2333332 


Q ss_pred             HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHH-HcCCeEEEEe
Q 028303           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAK-ENGLLFLEAS  149 (210)
Q Consensus        73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~-~~~~~~~~~s  149 (210)
                      ..+++.+|++++|+|++++.+..++. ++..+..   .+.|+|+|+||+|+.+....  ...++..... ...++++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            34578999999999999988777664 3333332   37899999999999642211  1112222111 2346899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHh
Q 028303          150 ARTAQNVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       150 a~~~~~i~~~~~~l~~~~~~~~~  172 (210)
                      |++|.|++++|+.+.+.+.....
T Consensus       364 Ak~g~gv~~lf~~i~~~~~~~~~  386 (472)
T PRK03003        364 AKTGRAVDKLVPALETALESWDT  386 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999887754433

>PRK11058 GTPase HflX; Provisional

Probab=99.87  E-value=5e-21  Score=156.88  Aligned_cols=158  Identities=18%  Similarity=0.139  Sum_probs=110.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh--hhh------hHHhhcc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF--RSI------TRSYYRG   78 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~------~~~~~~~   78 (210)
                      ++|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. ..+.+|||+|....  ..+      +...++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            68999999999999999999987765433333344444444555542 25679999997321  122      2234678


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe-EEEEecCCCCCHH
Q 028303           79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVE  157 (210)
Q Consensus        79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~  157 (210)
                      +|++++|+|++++.+...+..|...+......+.|+++|+||+|+.....   ....  ....+.+ ++++||++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence            99999999999988877776655555544445789999999999864211   1111  1123444 5889999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQN  170 (210)
Q Consensus       158 ~~~~~l~~~~~~~  170 (210)
                      ++++.|.+.+...
T Consensus       352 eL~e~I~~~l~~~  364 (426)
T PRK11058        352 LLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHhhhc
Confidence            9999999887543

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=1.8e-20  Score=152.90  Aligned_cols=159  Identities=18%  Similarity=0.172  Sum_probs=113.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch----hhhhhHHh---hccc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSITRSY---YRGA   79 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~   79 (210)
                      ..|+|+|.|+||||||+++|++.+......+.++.......+.++. ...+.+||+||..+    ...+...+   +..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            4799999999999999999998763322223323333333333431 34688999999632    22233333   4568


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 028303           80 AGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ  154 (210)
Q Consensus        80 d~~i~V~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  154 (210)
                      +++++|+|+++.   +++++...|...+..+..  .+.|+++|+||+|+.+    ..+.+..+....+.+++++||+++.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999864   566777777777766533  4689999999999843    2244555666666789999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 028303          155 NVEEAFIKTAAKILQN  170 (210)
Q Consensus       155 ~i~~~~~~l~~~~~~~  170 (210)
                      |+++++++|.+.+...
T Consensus       314 GI~eL~~~L~~~l~~~  329 (424)
T PRK12297        314 GLDELLYAVAELLEET  329 (424)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999998876543

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.87  E-value=2.2e-21  Score=145.19  Aligned_cols=159  Identities=21%  Similarity=0.189  Sum_probs=101.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCCceeEEEEEEEEEC---------------------------C----
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRF---QPVHDLTIGVEFGARMVTID---------------------------G----   52 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~----   52 (210)
                      ++|+++|+.|+|||||+..+.+...   ........+.........+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999975521   11111111111111111110                           1    


Q ss_pred             EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CC
Q 028303           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VS  130 (210)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~  130 (210)
                      ....+.+|||||++.+...+...+..+|++++|+|++++.........+..+...  ...|+++|+||+|+.+...  ..
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1157899999999998888888888999999999999742111112222222222  1247899999999864221  11


Q ss_pred             HHHHHHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          131 KEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       131 ~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      .+++++++...   .++++++||++++|++++++.|.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            23344444432   56799999999999999999987643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.87  E-value=4.6e-21  Score=158.63  Aligned_cols=148  Identities=25%  Similarity=0.245  Sum_probs=109.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh--------hHHhh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI--------TRSYY   76 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~   76 (210)
                      .++|+++|++|+|||||+|+|++..... ...+..+.+.....+.+++  ..+.+|||||...+...        ...++
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            4799999999999999999999876432 2233334455555566665  45789999998654321        23467


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus        77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                      +.+|++++|+|++++.+......|..      ..+.|+++|+||+|+.......        .....+++++|++++.|+
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI  358 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI  358 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence            89999999999999877665444432      3468999999999996533221        334567999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          157 EEAFIKTAAKILQ  169 (210)
Q Consensus       157 ~~~~~~l~~~~~~  169 (210)
                      ++++++|.+.+..
T Consensus       359 ~~L~~~L~~~l~~  371 (449)
T PRK05291        359 DELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999888754

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=5.9e-21  Score=140.21  Aligned_cols=148  Identities=18%  Similarity=0.204  Sum_probs=99.8

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc----------hhhhhh
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----------SFRSIT   72 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~   72 (210)
                      .+..++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++   .+.+|||||..          .+....
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence            45678999999999999999999998864444444444444444444442   58899999942          233344


Q ss_pred             HHhhc---cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC--CCCHHHHHHHHHHcC--CeE
Q 028303           73 RSYYR---GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR--AVSKEEGEQFAKENG--LLF  145 (210)
Q Consensus        73 ~~~~~---~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~--~~~  145 (210)
                      ..+++   .+|++++|+|++++.+..+.. ++..+..   .+.|+++++||+|+....  ....+++++.+...+  .++
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v  167 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV  167 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence            44554   357999999998865544432 2233322   368999999999986422  122344555555543  479


Q ss_pred             EEEecCCCCCHH
Q 028303          146 LEASARTAQNVE  157 (210)
Q Consensus       146 ~~~sa~~~~~i~  157 (210)
                      +++||++++|++
T Consensus       168 ~~~Sa~~g~gi~  179 (179)
T TIGR03598       168 QLFSSLKKTGID  179 (179)
T ss_pred             EEEECCCCCCCC
Confidence            999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.87  E-value=1.6e-20  Score=139.65  Aligned_cols=158  Identities=19%  Similarity=0.173  Sum_probs=105.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc----------chhhhhhH
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----------ESFRSITR   73 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~   73 (210)
                      +..++|+++|++|+|||||+++|.+..+.....++.+.+.......+   ...+.+|||||.          +.+.....
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            45689999999999999999999987655555555454444433332   257889999994          33444445


Q ss_pred             Hhhcc---ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHHcCCeEEEE
Q 028303           74 SYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKENGLLFLEA  148 (210)
Q Consensus        74 ~~~~~---~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~  148 (210)
                      .+++.   .+++++|+|+.++.+.... .....+. .  .+.|+++++||+|+......  ..+++...+.....+++++
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~-~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~  174 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK-E--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF  174 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH-H--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            55554   4688899998875443221 1111222 1  36899999999998643221  1223444444446789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028303          149 SARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       149 sa~~~~~i~~~~~~l~~~~~  168 (210)
                      |++++.|++++++.|.+.+.
T Consensus       175 Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        175 SSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EcCCCCCHHHHHHHHHHHhc
Confidence            99999999999999877653

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=3.1e-21  Score=159.83  Aligned_cols=177  Identities=20%  Similarity=0.143  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEecCCc--------chhhhhhHHhhcc
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ--------ESFRSITRSYYRG   78 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~   78 (210)
                      +|+++|.+|+|||||+|+|++...... ..+..+.+.......+++  ..+.+|||||.        +.+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998764322 222333334444445554  35889999995        3444566678899


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHH
Q 028303           79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVE  157 (210)
Q Consensus        79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~  157 (210)
                      +|++++|+|+.++.+.... .+...+..   .+.|+++|+||+|+.+....    ..++ ...++ +++++||+++.|+.
T Consensus        79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~~-~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAEF-YSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHHH-HhcCCCCeEEEeCCcCCChH
Confidence            9999999999875443321 22222222   26899999999998653321    2222 34455 69999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccccccCCcccccCCCCCCC
Q 028303          158 EAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPS  195 (210)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (210)
                      ++++.+.+.+.........+.....-+.+|....|+++
T Consensus       150 ~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSs  187 (429)
T TIGR03594       150 DLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKST  187 (429)
T ss_pred             HHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHH
Confidence            99999887764422111111111225667777766654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04163 Era Era subfamily

Probab=99.87  E-value=1.5e-20  Score=135.57  Aligned_cols=156  Identities=20%  Similarity=0.116  Sum_probs=102.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh--------hhHHhhc
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYR   77 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   77 (210)
                      ..+|+++|++|+|||||+++|.+.................. .........+.+|||||......        .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            57899999999999999999998765433322212111111 12223346788999999653322        3344578


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCeEEEEecCCCCCH
Q 028303           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNV  156 (210)
Q Consensus        78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i  156 (210)
                      .+|++++|+|++++... ....+...+...   +.|+++|+||+|+........+....+.... ..+++++|++++.++
T Consensus        82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            89999999999987221 112222333222   6899999999998643322223333333333 367999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          157 EEAFIKTAAK  166 (210)
Q Consensus       157 ~~~~~~l~~~  166 (210)
                      +++++.|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999998765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=9.3e-21  Score=157.20  Aligned_cols=175  Identities=21%  Similarity=0.142  Sum_probs=115.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcch--------hhhhhHHhhc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSYYR   77 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~   77 (210)
                      ++|+++|.+|+|||||+++|.+..... ...+..+.+.......+++  ..+.+|||||.+.        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            589999999999999999999876432 2223334444444455655  6789999999876        2333556788


Q ss_pred             cccEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 028303           78 GAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQ  154 (210)
Q Consensus        78 ~~d~~i~V~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~  154 (210)
                      .+|++++|+|+.++.+..+  +..|+.   .   .+.|+++|+||+|+.+.    .....++ ...++ .++++||+++.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            9999999999988644322  223322   2   27899999999996431    1223333 23455 38999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccccccccCCcccccCCCCCCC
Q 028303          155 NVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPS  195 (210)
Q Consensus       155 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (210)
                      |++++++.+.+...... ...........+.+|.++.|+++
T Consensus       149 gv~~l~~~I~~~~~~~~-~~~~~~~~~~v~ivG~~n~GKSt  188 (435)
T PRK00093        149 GIGDLLDAILEELPEEE-EEDEEDEPIKIAIIGRPNVGKSS  188 (435)
T ss_pred             CHHHHHHHHHhhCCccc-cccccccceEEEEECCCCCCHHH
Confidence            99999999887332211 11111122236677777777654

>cd01895 EngA2 EngA2 subfamily

Probab=99.86  E-value=2e-20  Score=135.99  Aligned_cols=155  Identities=24%  Similarity=0.149  Sum_probs=102.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCceeEEEEEEEEECCEEEEEEEEecCCcchhh----------h-hhH
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR----------S-ITR   73 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~-~~~   73 (210)
                      .++|+++|++|+|||||+++|++....... .+..+.......+..++.  .+.+|||||.....          . ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            478999999999999999999987643222 222223333333444543  46799999964321          1 122


Q ss_pred             HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-Hc----CCeEEEE
Q 028303           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-EN----GLLFLEA  148 (210)
Q Consensus        74 ~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~~  148 (210)
                      ..++.+|++++|+|+.++.+..... ++..+..   .+.|+++++||+|+.+......+...+... ..    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            3567899999999999886654432 2222222   368999999999986543222233222222 22    3679999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 028303          149 SARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       149 sa~~~~~i~~~~~~l~~~  166 (210)
                      |++++.|++++++.+.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998763

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.86  E-value=1.5e-20  Score=155.71  Aligned_cols=159  Identities=23%  Similarity=0.137  Sum_probs=107.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh-----------h
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-----------T   72 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~   72 (210)
                      ..++|+++|.+++|||||+++|++...... ..+..+.+.....+..++.  .+.+|||||.......           .
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence            458999999999999999999998764322 2222233333333444543  6789999996433221           1


Q ss_pred             HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEE
Q 028303           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLE  147 (210)
Q Consensus        73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~  147 (210)
                      ..+++.+|++++|+|++++.+..+.. ++..+..   .+.|+++|+||+|+.+. ....++.......     ..+++++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceEE
Confidence            34678999999999999887765543 2233222   36899999999998621 1112222222221     2478999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHH
Q 028303          148 ASARTAQNVEEAFIKTAAKILQN  170 (210)
Q Consensus       148 ~sa~~~~~i~~~~~~l~~~~~~~  170 (210)
                      +||++|.|++++|+++.+.+...
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999998876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=2.5e-20  Score=153.90  Aligned_cols=163  Identities=15%  Similarity=0.107  Sum_probs=110.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch----hhhh---hHHhhcc
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSI---TRSYYRG   78 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~   78 (210)
                      ...|+|+|.|+||||||+++|++........+..+.......+.+.+  ..+.+||+||..+    ...+   ....+..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            46899999999999999999998754332223334444444444444  5688999999532    1111   2234578


Q ss_pred             ccEEEEEEECCCh----hhHHHHHHHHHHHHhhc-----------CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC
Q 028303           79 AAGALLVYDITRR----ETFNHLSSWLEDARQHA-----------NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL  143 (210)
Q Consensus        79 ~d~~i~V~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  143 (210)
                      +|++++|+|+++.    +.+.++..+...+..+.           ....|+|+|+||+|+.+.... .+.....+...++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~  315 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW  315 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence            9999999999753    34444444444443332           136899999999998643321 2233334445578


Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303          144 LFLEASARTAQNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       144 ~~~~~sa~~~~~i~~~~~~l~~~~~~~~  171 (210)
                      +++++||+++.|+++++++|.+.+....
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            8999999999999999999988876543

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.86  E-value=1.8e-20  Score=159.25  Aligned_cols=154  Identities=21%  Similarity=0.224  Sum_probs=114.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC---CCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK---RFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      +.|+++|++++|||||+++|++.   .+.+++..+.+.+.....+..++  ..+.+||+||++.|.......+..+|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            46899999999999999999973   33344455556666655566655  67899999999999988888899999999


Q ss_pred             EEEECCCh---hhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCC--CHHHHHHHHHHc----CCeEEEEecCCC
Q 028303           84 LVYDITRR---ETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV--SKEEGEQFAKEN----GLLFLEASARTA  153 (210)
Q Consensus        84 ~V~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~sa~~~  153 (210)
                      +|+|++++   .+.+.+    ..+..   .++| +++++||+|+.+....  ..+++..++...    +++++++|++++
T Consensus        79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            99999984   333332    22222   2677 9999999999653321  123455555543    478999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 028303          154 QNVEEAFIKTAAKILQ  169 (210)
Q Consensus       154 ~~i~~~~~~l~~~~~~  169 (210)
                      .|++++++.|...+..
T Consensus       152 ~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       152 QGIGELKKELKNLLES  167 (581)
T ss_pred             CCchhHHHHHHHHHHh
Confidence            9999999988766544

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=2.1e-20  Score=160.68  Aligned_cols=156  Identities=19%  Similarity=0.184  Sum_probs=112.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEE--EEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM--VTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      ....|+|+|+.++|||||+++|....+.....+..+.+.....  +..++....+.||||||++.|..++..++..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            4579999999999999999999988776544443333333222  33334457899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-------HHcC--CeEEEEecCCC
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-------KENG--LLFLEASARTA  153 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~sa~~~  153 (210)
                      |+|+|++++........ +..+.   ..++|+|+++||+|+....   .+++...+       ..++  ++++++||++|
T Consensus       323 ILVVDA~dGv~~QT~E~-I~~~k---~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG  395 (742)
T CHL00189        323 ILIIAADDGVKPQTIEA-INYIQ---AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQG  395 (742)
T ss_pred             EEEEECcCCCChhhHHH-HHHHH---hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence            99999988533222221 22222   2478999999999986522   23232222       1222  68999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028303          154 QNVEEAFIKTAAKI  167 (210)
Q Consensus       154 ~~i~~~~~~l~~~~  167 (210)
                      .|++++++.|....
T Consensus       396 ~GIdeLle~I~~l~  409 (742)
T CHL00189        396 TNIDKLLETILLLA  409 (742)
T ss_pred             CCHHHHHHhhhhhh
Confidence            99999999987754

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=3.1e-20  Score=125.57  Aligned_cols=156  Identities=19%  Similarity=0.351  Sum_probs=122.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      +.++|+++|-.++||||++.+|.-... ....+|.+...  .+  +..+++.+.+||.+|++..+.+|..|+....++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnv--et--VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV--ET--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCC-cccccccceeE--EE--EEeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            468999999999999999999986543 33444544443  33  34456789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVEE  158 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~  158 (210)
                      |+|..+.+..++.+..+-.+....+ .+.|++|.+||.|++.  ..+.+++..++....     ..+.++++.+++++.+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            9999998777777766655543333 6899999999999976  445677776655433     3377999999999999


Q ss_pred             HHHHHHHHH
Q 028303          159 AFIKTAAKI  167 (210)
Q Consensus       159 ~~~~l~~~~  167 (210)
                      -|.+|...+
T Consensus       169 glswlsnn~  177 (180)
T KOG0071|consen  169 GLSWLSNNL  177 (180)
T ss_pred             HHHHHHhhc
Confidence            999987654

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.85  E-value=4.2e-20  Score=160.13  Aligned_cols=153  Identities=21%  Similarity=0.241  Sum_probs=111.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ....|+|+|+.++|||||+++|....+.....+..+.+.....+.+++  ..+.||||||++.|..++...+..+|++|+
T Consensus       289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            568899999999999999999998777655444444444444455554  568899999999999999989999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH-------HHHcC--CeEEEEecCCCCC
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF-------AKENG--LLFLEASARTAQN  155 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~sa~~~~~  155 (210)
                      |||++++..-..... +..+.   ..++|+|+++||+|+.+..   .+.+...       ...++  ++++++||++|.|
T Consensus       367 VVdAddGv~~qT~e~-i~~a~---~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G  439 (787)
T PRK05306        367 VVAADDGVMPQTIEA-INHAK---AAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG  439 (787)
T ss_pred             EEECCCCCCHhHHHH-HHHHH---hcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence            999998432222211 22222   2478999999999986422   2222221       22222  6799999999999


Q ss_pred             HHHHHHHHHHH
Q 028303          156 VEEAFIKTAAK  166 (210)
Q Consensus       156 i~~~~~~l~~~  166 (210)
                      ++++|++|...
T Consensus       440 I~eLle~I~~~  450 (787)
T PRK05306        440 IDELLEAILLQ  450 (787)
T ss_pred             chHHHHhhhhh
Confidence            99999998753

>PRK00089 era GTPase Era; Reviewed

Probab=99.85  E-value=3e-20  Score=146.50  Aligned_cols=158  Identities=20%  Similarity=0.150  Sum_probs=104.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh--------hhhHHhhc
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--------SITRSYYR   77 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~   77 (210)
                      .-.|+|+|++|+|||||+|+|++.........+.+.......+... ...++.+|||||.....        ......+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            4579999999999999999999987654433332222222222222 23678999999964322        23344678


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CeEEEEecCCCCCH
Q 028303           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNV  156 (210)
Q Consensus        78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i  156 (210)
                      .+|++++|+|++++... ........+.   ..+.|+++|+||+|+........+....+....+ .+++++||+++.|+
T Consensus        84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv  159 (292)
T PRK00089         84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV  159 (292)
T ss_pred             cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence            89999999999983221 1122222222   2368999999999986432222233444444333 56999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          157 EEAFIKTAAKIL  168 (210)
Q Consensus       157 ~~~~~~l~~~~~  168 (210)
                      +++++.|.+.+.
T Consensus       160 ~~L~~~L~~~l~  171 (292)
T PRK00089        160 DELLDVIAKYLP  171 (292)
T ss_pred             HHHHHHHHHhCC
Confidence            999999887763

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.85  E-value=3.8e-21  Score=142.26  Aligned_cols=160  Identities=23%  Similarity=0.198  Sum_probs=107.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC------------------CCCceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (210)
                      ...+|+++|+.++|||||+.+|+........                  ....+.......+........+.++||||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4689999999999999999999854321110                  0111222222222212445678999999999


Q ss_pred             hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-CCHHHHH-HHHHHc---
Q 028303           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGE-QFAKEN---  141 (210)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~-~~~~~~---  141 (210)
                      .|.......++.+|++|+|+|+.++.... ....+..+...   ++|+++++||+|+...+. ...++.. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            99998888999999999999999764422 23333444333   789999999999862111 0112222 222222   


Q ss_pred             ---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          142 ---GLLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       142 ---~~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                         .++++++||.+|.|++++++.|.+.+.
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence               357999999999999999999887653

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.85  E-value=9.4e-20  Score=136.25  Aligned_cols=117  Identities=16%  Similarity=0.341  Sum_probs=88.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccc-cEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGA-AGALLVY   86 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~V~   86 (210)
                      +|+++|++|||||||+++|....+......+ ............+....+.+||+||+..+...+..+++.+ +++|||+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999988765554433 2222222122223456789999999999998888899998 9999999


Q ss_pred             ECCCh-hhHHHHHHHHHHHHhh---cCCCCeEEEEEecCCCCC
Q 028303           87 DITRR-ETFNHLSSWLEDARQH---ANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        87 d~~~~-~s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~  125 (210)
                      |+.+. .++..+..|+..+...   ...++|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99997 6677766666554332   225799999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=3.6e-21  Score=134.68  Aligned_cols=161  Identities=25%  Similarity=0.353  Sum_probs=123.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCC-----C--CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF-----Q--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYY   76 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   76 (210)
                      ...+.|+++|.-++|||||+.++...-.     .  ....+|.+.....  +.+.  ...+.+||.+|++..+++|..|+
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~--i~v~--~~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGT--IEVC--NAPLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecc--eeec--cceeEEEEcCChHHHHHHHHHHH
Confidence            4568899999999999999998764311     1  1223344443333  3334  45789999999999999999999


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHH---H---cCCeEEEEe
Q 028303           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK---E---NGLLFLEAS  149 (210)
Q Consensus        77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~---~~~~~~~~s  149 (210)
                      ..+|++|+|+|+++++-++.....+..+..... .++|+++.+||.|+.+..  ..++++..+.   .   ...++.++|
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~pvS  168 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQPVS  168 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCCccCccccch
Confidence            999999999999999999888877666654433 789999999999997633  3345544443   2   246689999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHH
Q 028303          150 ARTAQNVEEAFIKTAAKILQN  170 (210)
Q Consensus       150 a~~~~~i~~~~~~l~~~~~~~  170 (210)
                      |.+|+|+++..+|+.+.+.+.
T Consensus       169 al~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  169 ALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhcccHHHHHHHHHHHHhhc
Confidence            999999999999999888766

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.85  E-value=1.1e-20  Score=151.50  Aligned_cols=180  Identities=19%  Similarity=0.089  Sum_probs=123.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh---------hhhHHhh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR---------SITRSYY   76 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~   76 (210)
                      ..|+++|.|++|||||+|||++.+.+-. ..+..+.+.......+.+..  +.++||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            6799999999999999999999876553 23333444444445555544  8899999965322         2455677


Q ss_pred             ccccEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 028303           77 RGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ  154 (210)
Q Consensus        77 ~~~d~~i~V~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  154 (210)
                      ..+|++|||+|...+.+-.+  +..++   + .  .+.|+|+|+||+|-..    ..+.+.+++...--..+.+||.+|.
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~L---r-~--~~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~Hg~  151 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKIL---R-R--SKKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEHGR  151 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHH---H-h--cCCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhhcc
Confidence            89999999999988544322  22332   2 2  2689999999999642    2233444555444568999999999


Q ss_pred             CHHHHHHHHHHHHH-HHHhhccccccccCCcccccCCCCCCCCCC
Q 028303          155 NVEEAFIKTAAKIL-QNIQEGALDAVNDSGIKVGYGRGQGPSGAR  198 (210)
Q Consensus       155 ~i~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (210)
                      |+.++++.+++.+. ....+...+...-+.+.+|.++.++|+.-|
T Consensus       152 Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN  196 (444)
T COG1160         152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLIN  196 (444)
T ss_pred             CHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHH
Confidence            99999999998874 222222111123448889999998887543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=2.8e-20  Score=162.00  Aligned_cols=179  Identities=19%  Similarity=0.114  Sum_probs=115.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEecCCcch--------hhhhhHHhh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSYY   76 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~   76 (210)
                      ..+|+++|.+++|||||+|+|++...... ..+..+.+.......+++  ..+.+|||||.+.        +......++
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            47899999999999999999998764322 223323333333333443  4678999999653        233455678


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCC
Q 028303           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQN  155 (210)
Q Consensus        77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~  155 (210)
                      +.+|++++|+|+++.....+ ..|...+..   .+.|+++|+||+|+.+..    .....+.. .+. ..+++||+++.|
T Consensus       353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~-lg~~~~~~iSA~~g~G  423 (712)
T PRK09518        353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWK-LGLGEPYPISAMHGRG  423 (712)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHH-cCCCCeEEEECCCCCC
Confidence            89999999999987432211 133334433   378999999999985421    12222222 222 357999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcc--ccccccCCcccccCCCCCCC
Q 028303          156 VEEAFIKTAAKILQNIQEGA--LDAVNDSGIKVGYGRGQGPS  195 (210)
Q Consensus       156 i~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  195 (210)
                      +++++++|.+.+....++..  ........+.+|.++.|+++
T Consensus       424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSS  465 (712)
T PRK09518        424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSS  465 (712)
T ss_pred             chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHH
Confidence            99999999988754211110  01122347778888866653

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=1.1e-19  Score=147.50  Aligned_cols=162  Identities=15%  Similarity=0.084  Sum_probs=111.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-------hhhhHHhhccc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------RSITRSYYRGA   79 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~   79 (210)
                      ..|+|+|.|+||||||+|+|++.+......+.++.......+.+.+ ...+.++||||....       .......+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            4799999999999999999998764222223333333443344432 235889999996431       11222357789


Q ss_pred             cEEEEEEECC---ChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CeEEEEecCC
Q 028303           80 AGALLVYDIT---RRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASART  152 (210)
Q Consensus        80 d~~i~V~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~  152 (210)
                      |++++|+|++   +...+.....|...+.....  .+.|+++|+||+|+...... .+.+..+....+  .+++++||++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence            9999999998   44566667777777665432  35899999999998643322 233444444433  4689999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 028303          153 AQNVEEAFIKTAAKILQN  170 (210)
Q Consensus       153 ~~~i~~~~~~l~~~~~~~  170 (210)
                      +.+++++++.|.+.+...
T Consensus       318 g~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        318 GLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CcCHHHHHHHHHHHhhhC
Confidence            999999999998877543

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.85  E-value=6.5e-20  Score=156.20  Aligned_cols=162  Identities=23%  Similarity=0.269  Sum_probs=114.1

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCC--C-----CCC------CCCceeEEEEEEEEE-----CCEEEEEEEEec
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRF--Q-----PVH------DLTIGVEFGARMVTI-----DGRPIKLQIWDT   62 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~   62 (210)
                      |..++.-+|+++|+.++|||||+.+|+...-  .     ...      ....+.++......+     ++..+.+++|||
T Consensus         2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDT   81 (600)
T PRK05433          2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDT   81 (600)
T ss_pred             CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEEC
Confidence            3445667999999999999999999986321  0     111      011233333222222     455788999999


Q ss_pred             CCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028303           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG  142 (210)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  142 (210)
                      ||+..|...+..+++.+|++|+|+|++++........|....    ..++|+++|+||+|+.+...  .....++....+
T Consensus        82 PGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg  155 (600)
T PRK05433         82 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIG  155 (600)
T ss_pred             CCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhC
Confidence            999999999999999999999999999876555555554332    13689999999999864221  122233434444


Q ss_pred             Ce---EEEEecCCCCCHHHHHHHHHHHHH
Q 028303          143 LL---FLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       143 ~~---~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      +.   ++++||+++.|++++++.|.+.+.
T Consensus       156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        156 IDASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            43   899999999999999999887664

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=7.5e-21  Score=134.88  Aligned_cols=161  Identities=30%  Similarity=0.560  Sum_probs=140.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++++++|..|.|||++++++....|...+.+|.+.......+.-+.+.+++..|||+|++.+..+...++-...+.|+
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            47999999999999999999999999999999999999999887777668999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      +||++...+..++..|...+.+.++ ++|+++++||.|..+..  .......+....++.|+++|++.+.|+..-|-++.
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La  165 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA  165 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence            9999999999999999988877654 69999999999986543  12233345556678899999999999999999998


Q ss_pred             HHHH
Q 028303          165 AKIL  168 (210)
Q Consensus       165 ~~~~  168 (210)
                      +.+.
T Consensus       166 rKl~  169 (216)
T KOG0096|consen  166 RKLT  169 (216)
T ss_pred             hhhc
Confidence            8764

>cd00880 Era_like Era (E

Probab=99.84  E-value=6.6e-20  Score=131.00  Aligned_cols=151  Identities=21%  Similarity=0.133  Sum_probs=103.0

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh-------hhHHhhccccEE
Q 028303           11 IIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-------ITRSYYRGAAGA   82 (210)
Q Consensus        11 v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d~~   82 (210)
                      ++|++|+|||||++++.+..... ......+............ ...+.+||+||......       ....+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            58999999999999999875542 2222223333333332222 45789999999765543       444578899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH---HHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE---EGEQFAKENGLLFLEASARTAQNVEEA  159 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~sa~~~~~i~~~  159 (210)
                      ++|+|+.++....... +.....   ..+.|+++|+||+|+.........   ...........+++++|++++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999987655554 233322   247899999999998654322211   112233334678999999999999999


Q ss_pred             HHHHHHH
Q 028303          160 FIKTAAK  166 (210)
Q Consensus       160 ~~~l~~~  166 (210)
                      +++|.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.84  E-value=1.3e-19  Score=154.24  Aligned_cols=146  Identities=20%  Similarity=0.211  Sum_probs=107.7

Q ss_pred             cCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh------hHHhh--ccccEEEE
Q 028303           13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI------TRSYY--RGAAGALL   84 (210)
Q Consensus        13 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~   84 (210)
                      |++|+|||||+|+|++........+..+.+.....+.+++.  .+++|||||+..+...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999988764444455556665555666654  5789999998766543      33333  37899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      |+|+++.+..   ..+...+..   .+.|+++++||+|+.+..... .+.+.+.+..+++++++||+++.|++++++.+.
T Consensus        79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999875421   222222222   378999999999986554444 346777888899999999999999999999998


Q ss_pred             HHH
Q 028303          165 AKI  167 (210)
Q Consensus       165 ~~~  167 (210)
                      +.+
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=5.7e-19  Score=125.25  Aligned_cols=155  Identities=24%  Similarity=0.355  Sum_probs=118.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCC--------CCC----CCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------VHD----LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI   71 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   71 (210)
                      -+..||+|.|+.++||||+++++.......        .+.    .|..+++...  .+.+ ...+++++||||++|...
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~--~~~~-~~~v~LfgtPGq~RF~fm   84 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI--ELDE-DTGVHLFGTPGQERFKFM   84 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccce--EEcC-cceEEEecCCCcHHHHHH
Confidence            456899999999999999999998775311        111    1222333322  2222 346889999999999999


Q ss_pred             hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCeEEEEe
Q 028303           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--GLLFLEAS  149 (210)
Q Consensus        72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s  149 (210)
                      |..+.+.++++|+++|.+.+..+ +....++.+....  .+|++|+.||.|+.+  ..+.+.+++.....  .+++++.+
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~  159 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEID  159 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeee
Confidence            99999999999999999999887 4445455444442  289999999999976  45567777777655  78999999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 028303          150 ARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       150 a~~~~~i~~~~~~l~~~  166 (210)
                      +.++++..+.++.+...
T Consensus       160 a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         160 ATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cccchhHHHHHHHHHhh
Confidence            99999999988887654

>COG1159 Era GTPase [General function prediction only]

Probab=99.83  E-value=3e-19  Score=136.20  Aligned_cols=159  Identities=21%  Similarity=0.123  Sum_probs=111.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch--------hhhhhHHh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY   75 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   75 (210)
                      -+.--|+++|.|++|||||+|++.+.+.+-.+....++......+...+ +.++.++||||...        ........
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            3456789999999999999999999998877776656555555554444 67899999999432        22244556


Q ss_pred             hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-c-CCeEEEEecCCC
Q 028303           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-N-GLLFLEASARTA  153 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~-~~~~~~~sa~~~  153 (210)
                      +..+|+++||+|++++... .-...++.+..   .+.|+++++||+|......... ...+++.. . ...++++||+++
T Consensus        83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~-~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159          83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLL-KLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHH-HHHHHHHhhCCcceEEEeecccc
Confidence            7899999999999985332 12223333333   3679999999999866444212 22222222 2 236999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028303          154 QNVEEAFIKTAAKIL  168 (210)
Q Consensus       154 ~~i~~~~~~l~~~~~  168 (210)
                      .+++.+.+.+...+.
T Consensus       158 ~n~~~L~~~i~~~Lp  172 (298)
T COG1159         158 DNVDTLLEIIKEYLP  172 (298)
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999998887766553

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.83  E-value=5.9e-19  Score=153.61  Aligned_cols=153  Identities=16%  Similarity=0.153  Sum_probs=110.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh----------hHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI----------TRSY   75 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~   75 (210)
                      .++|+++|++|||||||+|+|++........  .+.+.......+.....++.+|||||...+...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            4789999999999999999999876533222  334444444444555567899999997655321          2223


Q ss_pred             h--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCC
Q 028303           76 Y--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA  153 (210)
Q Consensus        76 ~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  153 (210)
                      +  ..+|++++|+|+++.+..   ..+...+..   .+.|+++++||+|+.+..... .+.+++.+..+++++++|++++
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecC
Confidence            2  478999999999986542   223334433   378999999999987544443 4566777888999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028303          154 QNVEEAFIKTAAKI  167 (210)
Q Consensus       154 ~~i~~~~~~l~~~~  167 (210)
                      +|++++.+.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999998887654

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=6.8e-19  Score=146.07  Aligned_cols=158  Identities=24%  Similarity=0.131  Sum_probs=105.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh----------hh-hh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----------RS-IT   72 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~-~~   72 (210)
                      ..++|+++|.+|+|||||+++|++..... ...+..+.+.....+..++  ..+.+|||||....          .. ..
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            46899999999999999999999765322 2222223333333344444  45779999995321          11 12


Q ss_pred             HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEE
Q 028303           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLE  147 (210)
Q Consensus        73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~  147 (210)
                      ..+++.+|++++|+|++++.+..+.. +...+..   .+.|+++++||+|+.+...  .++......     ...+++++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence            24678999999999999886655543 2223322   3689999999999863221  122222111     12478999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHH
Q 028303          148 ASARTAQNVEEAFIKTAAKILQN  170 (210)
Q Consensus       148 ~sa~~~~~i~~~~~~l~~~~~~~  170 (210)
                      +||+++.|++++++.+.+.....
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988766543

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.82  E-value=5.7e-19  Score=149.52  Aligned_cols=159  Identities=20%  Similarity=0.184  Sum_probs=105.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC----------------CEEEEEEEEecCCcchhh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------------GRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~   69 (210)
                      ..-|+++|++++|||||+++|.+..+........+.+.....+..+                .....+.+|||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            3569999999999999999999887655433322222121111111                011138899999999999


Q ss_pred             hhhHHhhccccEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC------------CHHHH
Q 028303           70 SITRSYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV------------SKEEG  134 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------------~~~~~  134 (210)
                      .++..+++.+|++++|+|++++   .++..+.    .+..   .++|+++++||+|+......            ..+.+
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            9999999999999999999973   3333332    2222   37899999999998632100            00000


Q ss_pred             ------------HHHHH------------H--cCCeEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303          135 ------------EQFAK------------E--NGLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       135 ------------~~~~~------------~--~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~  171 (210)
                                  .++..            .  ..++++++||++|+|+++++++|.......+
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l  219 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL  219 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence                        01111            0  1367999999999999999998876655434

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.82  E-value=1.8e-19  Score=148.95  Aligned_cols=158  Identities=20%  Similarity=0.138  Sum_probs=105.0

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCceeEEEEEEEEEC
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTID   51 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~   51 (210)
                      |+..+.++|+++|++++|||||+++|+...-.-.                             .....+.+.......+.
T Consensus         1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~   80 (425)
T PRK12317          1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE   80 (425)
T ss_pred             CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence            6788899999999999999999999984321100                             00022344444444455


Q ss_pred             CEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--
Q 028303           52 GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--  128 (210)
Q Consensus        52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--  128 (210)
                      ...+.+.+|||||++.+.......+..+|++++|+|+++...+ .....++..+... . ..|+++++||+|+.+...  
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~  158 (425)
T PRK12317         81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKR  158 (425)
T ss_pred             cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHH
Confidence            5567899999999988877666667899999999999872111 1112222222222 1 246899999999864221  


Q ss_pred             --CCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHHH
Q 028303          129 --VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAF  160 (210)
Q Consensus       129 --~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~  160 (210)
                        ...+++.+++...+     ++++++||++|.|+++..
T Consensus       159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence              11234555555544     569999999999998754

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.82  E-value=3.8e-22  Score=141.02  Aligned_cols=171  Identities=36%  Similarity=0.645  Sum_probs=144.8

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEE-EEEEEEecCCcchhhhhhHHhhccccE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP-IKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      .+..++++|+|.-|+|||+++.+++...+..++..+++.++......++... +++.|||..|++.+..+...+++.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            3567899999999999999999999999988999998888887777776554 488999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCCCCCC-HHHHHHHHHHcCCe-EEEEecCCCCC
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVS-KEEGEQFAKENGLL-FLEASARTAQN  155 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~-~~~~sa~~~~~  155 (210)
                      .++|||+++..+|+....|.+.+.....    ..+|+++..||+|........ .....++.+++++. .+++|++.+.+
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn  181 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN  181 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence            9999999999999999999988855432    457889999999986533222 35677788888865 99999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 028303          156 VEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       156 i~~~~~~l~~~~~~~~~~  173 (210)
                      ++|+...+++.++..-.+
T Consensus       182 i~Ea~r~lVe~~lvnd~q  199 (229)
T KOG4423|consen  182 IPEAQRELVEKILVNDEQ  199 (229)
T ss_pred             hhHHHHHHHHHHHhhccC
Confidence            999999999888765533

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=1e-18  Score=126.33  Aligned_cols=150  Identities=19%  Similarity=0.250  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch----------hhhhhHHhhc
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRSITRSYYR   77 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~   77 (210)
                      .|+++|++|+|||||++.+.+..+.....++.+.+.....+..+.   .+.+|||||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            379999999999999999997665555555555555444444443   788999999432          3334444443


Q ss_pred             ---cccEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHH--HcCCeEEEE
Q 028303           78 ---GAAGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAK--ENGLLFLEA  148 (210)
Q Consensus        78 ---~~d~~i~V~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~  148 (210)
                         ..+++++++|..+..+.  ..+..|+..      .+.|+++++||+|+......  ........+.  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               45789999999875322  222233322      15899999999998532211  1112222222  234679999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 028303          149 SARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       149 sa~~~~~i~~~~~~l~~~  166 (210)
                      |++++.++.++++.|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.81  E-value=1.8e-18  Score=150.74  Aligned_cols=159  Identities=23%  Similarity=0.201  Sum_probs=108.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcc----------hhhhh-h
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----------SFRSI-T   72 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~-~   72 (210)
                      ..++|+++|.+|+|||||+++|++..... ...+..+.+.....+.+++..  +.+|||||..          .+..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            35899999999999999999999886422 222333444444445666654  5699999953          22222 2


Q ss_pred             HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-H----cCCeEEE
Q 028303           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-E----NGLLFLE  147 (210)
Q Consensus        73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~  147 (210)
                      ...++.+|++++|+|++++.+...... +..+..   .+.|+++|+||+|+.+...  .+....... .    ...++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            345788999999999999877766543 333322   3789999999999864221  122222222 1    1356789


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHH
Q 028303          148 ASARTAQNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       148 ~sa~~~~~i~~~~~~l~~~~~~~~  171 (210)
                      +||+++.|++++++.+.+.+....
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~~~  624 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALESWD  624 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999988876543

>PRK10218 GTP-binding protein; Provisional

Probab=99.81  E-value=2.1e-18  Score=146.54  Aligned_cols=163  Identities=18%  Similarity=0.151  Sum_probs=114.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC--CCCCC------------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS   70 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (210)
                      ..-+|+++|+.++|||||+++|+..  .+...            ...+.+.++......+....+.+++|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            4579999999999999999999963  22221            112445666666666666778999999999999999


Q ss_pred             hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHHH-------cC
Q 028303           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAKE-------NG  142 (210)
Q Consensus        71 ~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~  142 (210)
                      .+..+++.+|++++|+|+.++... ....++..+..   .++|.++++||+|+.+... ...+++..++..       ..
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            999999999999999999886432 22333333333   3789999999999865322 223344444422       34


Q ss_pred             CeEEEEecCCCCC----------HHHHHHHHHHHHHHHHhhcc
Q 028303          143 LLFLEASARTAQN----------VEEAFIKTAAKILQNIQEGA  175 (210)
Q Consensus       143 ~~~~~~sa~~~~~----------i~~~~~~l~~~~~~~~~~~~  175 (210)
                      ++++.+|+++|.+          +..+++.    +....|...
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~----Ii~~iP~P~  198 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQA----IVDHVPAPD  198 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHH----HHHhCCCCC
Confidence            6799999999984          5555554    445555543

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.81  E-value=5.5e-18  Score=129.15  Aligned_cols=151  Identities=25%  Similarity=0.221  Sum_probs=101.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh-------hhhHHhhcccc
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SITRSYYRGAA   80 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   80 (210)
                      +|+++|++|+|||||+++|++........+..+.+.....+.+++  ..+++||+||.....       ......++.+|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998764332222223444444455554  568899999974322       23345788999


Q ss_pred             EEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------H-------------
Q 028303           81 GALLVYDITRRE-TFNHLSSWLEDA-----------------------------------------R-------------  105 (210)
Q Consensus        81 ~~i~V~d~~~~~-s~~~~~~~~~~~-----------------------------------------~-------------  105 (210)
                      ++++|+|++++. ....+...+...                                         .             
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998755 232222222100                                         0             


Q ss_pred             -----------hhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          106 -----------QHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       106 -----------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                                 ......+|+++|+||+|+.     ..+++..++..  ..++++||+++.|++++++.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0001236999999999974     34455555443  4589999999999999999987754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.81  E-value=7e-19  Score=149.51  Aligned_cols=156  Identities=21%  Similarity=0.223  Sum_probs=110.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC--CCCCCC------------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhH
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK--RFQPVH------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR   73 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   73 (210)
                      +|+++|+.++|||||+++|+..  .+....            ....+.+.......+....+++.+|||||+..|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999863  221110            11224444444444445567899999999999999999


Q ss_pred             HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHH-------HcCCeE
Q 028303           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAK-------ENGLLF  145 (210)
Q Consensus        74 ~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~~  145 (210)
                      .+++.+|++++|+|+.++. ......|+..+...   ++|+++|+||+|+.+... ...+++..++.       ...+++
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv  158 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI  158 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence            9999999999999998743 33445565555443   689999999999865332 11234444443       235679


Q ss_pred             EEEecCCCC----------CHHHHHHHHHHHH
Q 028303          146 LEASARTAQ----------NVEEAFIKTAAKI  167 (210)
Q Consensus       146 ~~~sa~~~~----------~i~~~~~~l~~~~  167 (210)
                      +.+||+++.          ++..+|+.|++.+
T Consensus       159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            999999996          6877777766554

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.81  E-value=7.1e-19  Score=145.36  Aligned_cols=155  Identities=19%  Similarity=0.139  Sum_probs=103.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCC--CCCC---------------------------CCCCceeEEEEEEEEECCEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV---------------------------HDLTIGVEFGARMVTIDGRP   54 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   54 (210)
                      ...++|+++|+.++|||||+.+|+...  ....                           .....+.+.......+....
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            467999999999999999999998521  1100                           00111333333344455556


Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHH--HHHHHHHHhhcCCCCeEEEEEecCCCCCCCC----
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL--SSWLEDARQHANPNMSIMLVGNKCDLAHRRA----  128 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----  128 (210)
                      +.+.+|||||++.|.......+..+|++++|+|++++++....  ..++... ... ...|+++++||+|+.+...    
T Consensus        85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~-~~~~iIVviNK~Dl~~~~~~~~~  162 (426)
T TIGR00483        85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTL-GINQLIVAINKMDSVNYDEEEFE  162 (426)
T ss_pred             eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHc-CCCeEEEEEEChhccCccHHHHH
Confidence            7899999999998877777778899999999999987533111  1112222 222 1357899999999964222    


Q ss_pred             CCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHHH
Q 028303          129 VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAF  160 (210)
Q Consensus       129 ~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~  160 (210)
                      ...+++..++...+     ++++++||+++.|+.+.+
T Consensus       163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            11245556666554     579999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.80  E-value=6.7e-19  Score=132.22  Aligned_cols=149  Identities=19%  Similarity=0.134  Sum_probs=94.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCC--------------------------C---CCceeEEEEEEEEECCEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------------------D---LTIGVEFGARMVTIDGRPIKLQ   58 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~--------------------------~---~~~~~~~~~~~~~~~~~~~~~~   58 (210)
                      +|+++|++++|||||+++|+...-....                          .   ...+.+.......+......+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            5899999999999999999754321110                          0   0012222222233333445788


Q ss_pred             EEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC----CHHHH
Q 028303           59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV----SKEEG  134 (210)
Q Consensus        59 i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~  134 (210)
                      +|||||++.+.......++.+|++++|+|++++..... ...+..+....  ..++|+|+||+|+.+....    ...++
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~~--~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLLG--IRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHcC--CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            99999998887767777899999999999987642222 12222222221  2357788999998642211    12234


Q ss_pred             HHHHHHcC---CeEEEEecCCCCCHHHH
Q 028303          135 EQFAKENG---LLFLEASARTAQNVEEA  159 (210)
Q Consensus       135 ~~~~~~~~---~~~~~~sa~~~~~i~~~  159 (210)
                      ..++...+   .+++++||+++.|+.+.
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            44555555   45899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.80  E-value=1.3e-18  Score=142.81  Aligned_cols=162  Identities=19%  Similarity=0.168  Sum_probs=105.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCC---CCC--CCceeEEEEEE------------EEE----CC------EEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---VHD--LTIGVEFGARM------------VTI----DG------RPIK   56 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~--~~~~~~~~~~~------------~~~----~~------~~~~   56 (210)
                      +..++|+++|+.++|||||+++|.+.....   +..  .|....+....            +..    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            457899999999999999999997542211   111  11111110000            001    11      1357


Q ss_pred             EEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHH
Q 028303           57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEG  134 (210)
Q Consensus        57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~  134 (210)
                      +.+||+||++.|...+......+|++++|+|++++.........+..+....  ..|+++++||+|+.+....  ..+++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHH
Confidence            8999999999999888888889999999999997531122222333332221  2478999999998653211  12344


Q ss_pred             HHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          135 EQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       135 ~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      ..+....   +++++++||++++|++++++.|...+
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            4444432   57899999999999999999988754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.80  E-value=4.8e-18  Score=125.99  Aligned_cols=148  Identities=18%  Similarity=0.147  Sum_probs=99.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCC------C--------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ------P--------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI   71 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   71 (210)
                      .++|+++|+.++|||||+++|+.....      .        ......+.+.......+.....++.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            589999999999999999999864100      0        00012244444444555555667889999999988888


Q ss_pred             hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCC---CHHHHHHHHHHc-----C
Q 028303           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV---SKEEGEQFAKEN-----G  142 (210)
Q Consensus        72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~  142 (210)
                      ....+..+|++++|+|+..+.... ....+..+...   ++| +|+++||+|+......   ..+++..++...     .
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            888889999999999998753322 22333333332   566 7789999998532211   112344555443     3


Q ss_pred             CeEEEEecCCCCCHH
Q 028303          143 LLFLEASARTAQNVE  157 (210)
Q Consensus       143 ~~~~~~sa~~~~~i~  157 (210)
                      ++++++||++|.++.
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            679999999998853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.80  E-value=1.5e-18  Score=142.32  Aligned_cols=162  Identities=19%  Similarity=0.186  Sum_probs=103.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCCceeEEEE--EEE------------E----EC--C----EEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDLTIGVEFGA--RMV------------T----ID--G----RPIK   56 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~--~~~------------~----~~--~----~~~~   56 (210)
                      ++.++|+++|+.++|||||+.+|.+.-..   .+.....+.....  ..+            .    ++  +    ....
T Consensus         7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (411)
T PRK04000          7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR   86 (411)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence            56799999999999999999999653111   1111111111111  000            0    01  0    1257


Q ss_pred             EEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHH
Q 028303           57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEG  134 (210)
Q Consensus        57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~  134 (210)
                      +.+|||||++.+..........+|++++|+|++++.........+..+....  ..|+++|+||+|+.+....  ..+++
T Consensus        87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~~~i  164 (411)
T PRK04000         87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG--IKNIVIVQNKIDLVSKERALENYEQI  164 (411)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEeeccccchhHHHHHHHH
Confidence            8999999999887766666778899999999996531111112222222221  2368999999998653221  12344


Q ss_pred             HHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          135 EQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       135 ~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      ..++...   ..+++++||+++.|++++++.|...+
T Consensus       165 ~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        165 KEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            4444432   47899999999999999999987765

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.80  E-value=6.3e-18  Score=143.63  Aligned_cols=160  Identities=22%  Similarity=0.243  Sum_probs=104.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC------CEE-----E-----EEEEEecCCcchh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID------GRP-----I-----KLQIWDTAGQESF   68 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~-----~~~i~D~~G~~~~   68 (210)
                      +...|+++|++++|||||+++|.+...........+.+........+      +..     .     .+.+|||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            44679999999999999999998775544333322222221111111      111     1     2689999999999


Q ss_pred             hhhhHHhhccccEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC----C--------HH-
Q 028303           69 RSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV----S--------KE-  132 (210)
Q Consensus        69 ~~~~~~~~~~~d~~i~V~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~--------~~-  132 (210)
                      ..++...+..+|++++|+|+++   +.++..+.    .+..   .++|+++++||+|+......    .        .. 
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            9998888899999999999997   44444332    2222   37899999999998521100    0        00 


Q ss_pred             ----------HHHHHHHH---------------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303          133 ----------EGEQFAKE---------------NGLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       133 ----------~~~~~~~~---------------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~  171 (210)
                                +....+..               ..++++++||+++.|++++++.+...+...+
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l  221 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYL  221 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHH
Confidence                      01111111               1357899999999999999998876554433

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.79  E-value=5.9e-18  Score=144.52  Aligned_cols=156  Identities=15%  Similarity=0.119  Sum_probs=105.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      -|+++|+.++|||||+++|++..   +.++.....+.+.....+...+ ...+.+|||||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            58999999999999999999642   3333333334444333333322 2357899999999998878888899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCC--CHHHHHHHHHHcC---CeEEEEecCCCCCHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV--SKEEGEQFAKENG---LLFLEASARTAQNVEE  158 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~sa~~~~~i~~  158 (210)
                      |+|++++..- .....+..+...   ++| +++|+||+|+.+....  ..+++.+++...+   .+++++|++++.|+++
T Consensus        81 VVda~eg~~~-qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         81 VVACDDGVMA-QTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            9999874221 112222222222   455 5799999998643211  1234455554443   6799999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          159 AFIKTAAKIL  168 (210)
Q Consensus       159 ~~~~l~~~~~  168 (210)
                      +++.|.+...
T Consensus       157 L~~~L~~~~~  166 (614)
T PRK10512        157 LREHLLQLPE  166 (614)
T ss_pred             HHHHHHHhhc
Confidence            9999876543

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.79  E-value=1.6e-18  Score=117.44  Aligned_cols=156  Identities=22%  Similarity=0.328  Sum_probs=115.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+++|-.++|||||++.|.+... .+-.+|.+  +....+..++ .+.+++||.+|+...+..|.+|+.++|++|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence            4579999999999999999999986543 22333333  4444444444 678999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~  157 (210)
                      ||+|.++.--++++...+..+....+ ..+|+.+..||.|+....  ..+++..-++.     ....+.++|+..++++.
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa--~~eeia~klnl~~lrdRswhIq~csals~eg~~  168 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA--KVEEIALKLNLAGLRDRSWHIQECSALSLEGST  168 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc--chHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence            99999998888888777766655544 679999999999985422  22222221111     12346799999999998


Q ss_pred             HHHHHHHH
Q 028303          158 EAFIKTAA  165 (210)
Q Consensus       158 ~~~~~l~~  165 (210)
                      +-.+++..
T Consensus       169 dg~~wv~s  176 (185)
T KOG0074|consen  169 DGSDWVQS  176 (185)
T ss_pred             Ccchhhhc
Confidence            88877654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.78  E-value=7.4e-18  Score=135.33  Aligned_cols=162  Identities=25%  Similarity=0.178  Sum_probs=111.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-ceeEEEEEEEEECCEEEEEEEEecCCcc----------hhhh-hh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGVEFGARMVTIDGRPIKLQIWDTAGQE----------SFRS-IT   72 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~-~~   72 (210)
                      ..++|+++|.|++|||||+|+|++....-..... ++.+.....+..++.  .+.++||+|-.          .|.. -.
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence            4699999999999999999999988764443332 233333333444554  46799999932          2222 23


Q ss_pred             HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEE
Q 028303           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLE  147 (210)
Q Consensus        73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~  147 (210)
                      ...+..+|++++|+|++.+.+.++.+-. ..+.   +.+.++++++||+|+.+......++.+.....     ..+++++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~ia-~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLRIA-GLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHHHH-HHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            4467889999999999998765554322 1122   23789999999999876544444444433332     2467999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHHh
Q 028303          148 ASARTAQNVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       148 ~sa~~~~~i~~~~~~l~~~~~~~~~  172 (210)
                      +||+++.++.++|+.+.+.......
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~~~  355 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECATR  355 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHhcc
Confidence            9999999999999987766554443

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.78  E-value=1.3e-17  Score=127.25  Aligned_cols=114  Identities=18%  Similarity=0.151  Sum_probs=82.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCC----------------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI   71 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   71 (210)
                      +|+++|+.|+|||||+++|+...-....                ....+.+.......+.....++.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999864211000                011223333333444445678999999999999988


Q ss_pred             hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      +..+++.+|++++|+|+.++... ....++..+...   ++|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~  130 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence            99999999999999999986543 334455544433   789999999999853

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.78  E-value=7.3e-18  Score=116.99  Aligned_cols=135  Identities=23%  Similarity=0.270  Sum_probs=96.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc----chhhhhhHHhhccccEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----ESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~i   83 (210)
                      ||+|+|+.|||||||+++|.+...  .+..|....+       .+     .++||||.    ..+.........++|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-------YD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe-------cc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999998654  3333422221       11     25899993    334444555567999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIK  162 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~  162 (210)
                      +|.|++++.+.-. ..+...      -..|+|=|+||+|+... ....+.++++++.-++. +|++|+.+++|++++.++
T Consensus        69 ll~dat~~~~~~p-P~fa~~------f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-PGFASM------FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-chhhcc------cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999998643111 011111      15799999999999732 34567788888887765 899999999999999998


Q ss_pred             HH
Q 028303          163 TA  164 (210)
Q Consensus       163 l~  164 (210)
                      |.
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            74

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.78  E-value=8.1e-18  Score=135.46  Aligned_cols=153  Identities=23%  Similarity=0.248  Sum_probs=108.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEecCCcchhhh--------hhHHhh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYY   76 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~   76 (210)
                      -++++++|.||+|||||+|.|.+....-.... .++.+.-...+.++|  +.+.+.||+|..+...        .....+
T Consensus       217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            47999999999999999999999877664443 334445555566666  5578999999654333        234567


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus        77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                      .++|.++||+|++.+.+-.+...+ .    ....+.|+++|.||.|+........  .   ....+.+++.+|+++++|+
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~~~~-~----~~~~~~~~i~v~NK~DL~~~~~~~~--~---~~~~~~~~i~iSa~t~~Gl  364 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDLALI-E----LLPKKKPIIVVLNKADLVSKIELES--E---KLANGDAIISISAKTGEGL  364 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhHHHH-H----hcccCCCEEEEEechhcccccccch--h---hccCCCceEEEEecCccCH
Confidence            899999999999986332222211 1    2234789999999999976443211  1   1122446899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028303          157 EEAFIKTAAKILQN  170 (210)
Q Consensus       157 ~~~~~~l~~~~~~~  170 (210)
                      +.+.+.|.+.+...
T Consensus       365 ~~L~~~i~~~~~~~  378 (454)
T COG0486         365 DALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999988877766

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=5.3e-19  Score=120.14  Aligned_cols=160  Identities=21%  Similarity=0.307  Sum_probs=117.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      +...+|+++|--|+|||++.-++.-..... ..|+.+...    ..+..+++.+++||.+|+......|..|+.+.|++|
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnv----e~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNV----ETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCc----cccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence            467899999999999999988876554432 233333332    234457889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHH-----HHHHcCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQ-----FAKENGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~sa~~~~~i~  157 (210)
                      ||+|.+|.+...-....+..+... .-++..+++++||.|.....  ...|+..     ..++.-..+++.||.+++|++
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld  168 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD  168 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence            999999987665555444433333 23567888999999986422  2233222     223334679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQN  170 (210)
Q Consensus       158 ~~~~~l~~~~~~~  170 (210)
                      ..++||.+.+.++
T Consensus       169 ~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  169 PAMDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999998877543

>cd04167 Snu114p Snu114p subfamily

Probab=99.77  E-value=6.5e-18  Score=127.39  Aligned_cols=113  Identities=24%  Similarity=0.313  Sum_probs=79.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------C------CCceeEEEEEEEE--E---CCEEEEEEEEecCCc
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------D------LTIGVEFGARMVT--I---DGRPIKLQIWDTAGQ   65 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~------~~~~~~~~~~~~~--~---~~~~~~~~i~D~~G~   65 (210)
                      +|+++|+.++|||||+++|+........           .      ...+.+.....+.  +   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            5899999999999999999875433210           0      0112222222221  2   355688999999999


Q ss_pred             chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      ..+......++..+|++++|+|+.+..+... ..++..+..   .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9998888889999999999999988765432 233333322   258999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.77  E-value=3.6e-18  Score=129.27  Aligned_cols=148  Identities=20%  Similarity=0.171  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC---------------------------C--CCCCCceeEEEEEEEEECCEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQ---------------------------P--VHDLTIGVEFGARMVTIDGRPIKLQ   58 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~   58 (210)
                      +|+++|+.++|||||+.+|+...-.                           .  ......+.+.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            5899999999999999998632110                           0  0001123333333344444557889


Q ss_pred             EEecCCcchhhhhhHHhhccccEEEEEEECCChhh------HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC--CCCC
Q 028303           59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRET------FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR--RAVS  130 (210)
Q Consensus        59 i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~  130 (210)
                      +|||||+..+...+...++.+|++++|+|++++..      .......+......  ...|+++++||+|+...  ....
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence            99999998887777777889999999999998521      11122222222222  13689999999998632  1111


Q ss_pred             H----HHHHHHHHHcC-----CeEEEEecCCCCCHH
Q 028303          131 K----EEGEQFAKENG-----LLFLEASARTAQNVE  157 (210)
Q Consensus       131 ~----~~~~~~~~~~~-----~~~~~~sa~~~~~i~  157 (210)
                      .    +++..++...+     ++++++||++|.|++
T Consensus       159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1    22333344433     569999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12736 elongation factor Tu; Reviewed

Probab=99.76  E-value=3.1e-17  Score=134.16  Aligned_cols=147  Identities=18%  Similarity=0.150  Sum_probs=97.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      .+.++|+++|+.++|||||+++|++.....              ......+.+.......+......+.+|||||+++|.
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence            467999999999999999999998631100              000122344444445555555678899999999888


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCCC---HHHHHHHHHHcC---
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---KEEGEQFAKENG---  142 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~---  142 (210)
                      ......+..+|++++|+|+.++.... ...++..+...   ++| +|+++||+|+.+.....   .+++..++...+   
T Consensus        90 ~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  165 (394)
T PRK12736         90 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG  165 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence            87777788999999999998753222 22333333332   677 67889999986422211   124455555443   


Q ss_pred             --CeEEEEecCCCC
Q 028303          143 --LLFLEASARTAQ  154 (210)
Q Consensus       143 --~~~~~~sa~~~~  154 (210)
                        ++++++|++++.
T Consensus       166 ~~~~ii~vSa~~g~  179 (394)
T PRK12736        166 DDIPVIRGSALKAL  179 (394)
T ss_pred             CCccEEEeeccccc
Confidence              579999999973

>PRK12735 elongation factor Tu; Reviewed

Probab=99.75  E-value=4.6e-17  Score=133.21  Aligned_cols=159  Identities=16%  Similarity=0.148  Sum_probs=103.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhC-------CCC-----C--CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDK-------RFQ-----P--VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~-------~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      .+.++|+++|++++|||||+++|++.       .+.     .  ......+.+.......+.....++.++||||++.|.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence            46799999999999999999999862       100     0  001122344444444454455678899999999888


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEecCCCCCCCCC---CHHHHHHHHHHcC---
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAV---SKEEGEQFAKENG---  142 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~---  142 (210)
                      ......+..+|++++|+|+.++... ....++..+..   .++|.+ +++||+|+.+....   ..+++..++...+   
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~  165 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG  165 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence            7777778899999999999875322 22233333332   267865 57999998642211   1124555555543   


Q ss_pred             --CeEEEEecCCCC----------CHHHHHHHHHHH
Q 028303          143 --LLFLEASARTAQ----------NVEEAFIKTAAK  166 (210)
Q Consensus       143 --~~~~~~sa~~~~----------~i~~~~~~l~~~  166 (210)
                        ++++++|+.++.          ++..+++.|...
T Consensus       166 ~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        166 DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             CceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence              679999999985          455555555443

>COG2262 HflX GTPases [General function prediction only]

Probab=99.75  E-value=9.9e-17  Score=127.15  Aligned_cols=164  Identities=19%  Similarity=0.088  Sum_probs=121.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc--------hhhhhhHHhh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE--------SFRSITRSYY   76 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~   76 (210)
                      ....|.++|.+++|||||+|+|++.........+.+.+.....+.+.+ ...+.+.||.|.-        ..........
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~  269 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV  269 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence            457899999999999999999998887766666666766666677765 3457789999942        1122233445


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus        77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                      ..+|+++.|+|++++.....+..-...+........|+|+|.||+|+.....     ....+....-..+.+||+++.|+
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~gl  344 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGEGL  344 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCcCH
Confidence            6899999999999998878887777777776556799999999999754332     11111111114789999999999


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 028303          157 EEAFIKTAAKILQNIQEG  174 (210)
Q Consensus       157 ~~~~~~l~~~~~~~~~~~  174 (210)
                      +.+.+.|.+.+.......
T Consensus       345 ~~L~~~i~~~l~~~~~~~  362 (411)
T COG2262         345 DLLRERIIELLSGLRTEV  362 (411)
T ss_pred             HHHHHHHHHHhhhcccce
Confidence            999999988887665443

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.74  E-value=7.4e-17  Score=132.02  Aligned_cols=148  Identities=18%  Similarity=0.152  Sum_probs=98.2

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCC------CC--------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRF------QP--------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF   68 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   68 (210)
                      ..+.++|+++|+.++|||||+++|++...      ..        ......+.+.......++.....+.+|||||++.|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            35679999999999999999999974210      00        00011234444444555555667899999999988


Q ss_pred             hhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEecCCCCCCCCCC---HHHHHHHHHHcC--
Q 028303           69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS---KEEGEQFAKENG--  142 (210)
Q Consensus        69 ~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~--  142 (210)
                      .......+..+|++++|+|+.++.... ....+..+...   ++|.+ +++||+|+.+.....   .++++.++...+  
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~  164 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            877777778899999999998743222 22333333322   56765 689999986432211   234556666554  


Q ss_pred             ---CeEEEEecCCCC
Q 028303          143 ---LLFLEASARTAQ  154 (210)
Q Consensus       143 ---~~~~~~sa~~~~  154 (210)
                         ++++++|+.++.
T Consensus       165 ~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       165 GDDTPIIRGSALKAL  179 (394)
T ss_pred             ccCccEEECcccccc
Confidence               689999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.74  E-value=1.1e-16  Score=134.13  Aligned_cols=157  Identities=18%  Similarity=0.176  Sum_probs=114.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc------hhhhhhHHh-h-c
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE------SFRSITRSY-Y-R   77 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~~~~~~~~-~-~   77 (210)
                      ..+|+++|+||+|||||+|+|++....-..-+..+.+.....+...+..  +++.|.||--      .-+.....+ + .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            3569999999999999999999988766666666777777666666654  7899999922      112223333 3 4


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (210)
Q Consensus        78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  157 (210)
                      ++|+++-|+|+++-+.--.+   ..++.+   -+.|+++++|++|..+++.+.. +.+++.+..++|+++++|+.|.|++
T Consensus        81 ~~D~ivnVvDAtnLeRnLyl---tlQLlE---~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYL---TLQLLE---LGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEcccchHHHHHHH---HHHHHH---cCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCHH
Confidence            67999999999986531111   122222   3789999999999876554432 3567778889999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQNI  171 (210)
Q Consensus       158 ~~~~~l~~~~~~~~  171 (210)
                      ++...+.+...+..
T Consensus       154 ~l~~~i~~~~~~~~  167 (653)
T COG0370         154 ELKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHHhccccc
Confidence            99998876544443

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.73  E-value=1.8e-17  Score=135.78  Aligned_cols=163  Identities=26%  Similarity=0.322  Sum_probs=120.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+|+|+.|+||||||-.|....+.+.-++......-+....-  ..+..++.|++..+.-.......++++|++++
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtP--e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTP--ENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCc--CcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            5699999999999999999999999887765554332222222222  23447899998776666667788999999999


Q ss_pred             EEECCChhhHHHHHH-HHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHH-HHHHHHHcC-Ce-EEEEecCCCCCHHH
Q 028303           85 VYDITRRETFNHLSS-WLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEE-GEQFAKENG-LL-FLEASARTAQNVEE  158 (210)
Q Consensus        85 V~d~~~~~s~~~~~~-~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~~-~~~~sa~~~~~i~~  158 (210)
                      ||+++++++.+.+.. |+..+++..+  .++|+|+|+||+|.......+.+. ...+...+. +. .++|||++..++.+
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e  165 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE  165 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence            999999999999885 5555555543  679999999999997655554333 333333322 22 78999999999999


Q ss_pred             HHHHHHHHHHH
Q 028303          159 AFIKTAAKILQ  169 (210)
Q Consensus       159 ~~~~l~~~~~~  169 (210)
                      +|.+..+.++.
T Consensus       166 ~fYyaqKaVih  176 (625)
T KOG1707|consen  166 LFYYAQKAVIH  176 (625)
T ss_pred             hhhhhhheeec
Confidence            99987776654

>cd04169 RF3 RF3 subfamily

Probab=99.73  E-value=2.6e-16  Score=122.09  Aligned_cols=115  Identities=19%  Similarity=0.196  Sum_probs=80.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCC---------C-----------CceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD---------L-----------TIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (210)
                      -+|+++|++|+|||||+++|+...-.....         .           ..+.+.......+....+++.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            369999999999999999997532111000         0           11333444444555666789999999999


Q ss_pred             hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      .|.......++.+|++|+|+|++++... ....++.....   .++|+++++||+|+.+
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            8888777888999999999999875432 22333333322   3789999999999865

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.73  E-value=3.5e-17  Score=123.51  Aligned_cols=163  Identities=19%  Similarity=0.274  Sum_probs=101.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEecCCcchhhh-----hhHHhhccccE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRS-----ITRSYYRGAAG   81 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~   81 (210)
                      ||+++|+.+|||||+.+.+.+.-.+.+ ....+.+.......+ ....+.+.+||+||+..+..     .....++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999998888776543222 222233333333333 23356899999999875544     35778899999


Q ss_pred             EEEEEECCChhhHHHHHHHHH---HHHhhcCCCCeEEEEEecCCCCCCC--CCCH----HHHHHHHHHcC---CeEEEEe
Q 028303           82 ALLVYDITRRETFNHLSSWLE---DARQHANPNMSIMLVGNKCDLAHRR--AVSK----EEGEQFAKENG---LLFLEAS  149 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~---~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~----~~~~~~~~~~~---~~~~~~s  149 (210)
                      +|||+|+...+..+++..+..   .+... .+++.+.++++|+|+..+.  ....    +.+.+.+...+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            999999995444444444433   33333 3689999999999985321  1111    22333344445   7799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhh
Q 028303          150 ARTAQNVEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       150 a~~~~~i~~~~~~l~~~~~~~~~~  173 (210)
                      ..+ +.+-+.+..+++.+.+..+.
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~~~  181 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNLST  181 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTHCC
T ss_pred             CcC-cHHHHHHHHHHHHHcccHHH
Confidence            998 68888888888888766554

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.73  E-value=2.4e-16  Score=119.36  Aligned_cols=154  Identities=18%  Similarity=0.133  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc------------eeEEE--EEE----------------------EEEC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI------------GVEFG--ARM----------------------VTID   51 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~------------~~~~~--~~~----------------------~~~~   51 (210)
                      ||+++|+.++|||||+++|....+........            +.+..  ...                      ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            58999999999999999999765533211100            00000  000                      0011


Q ss_pred             CEEEEEEEEecCCcchhhhhhHHhhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303           52 GRPIKLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (210)
Q Consensus        52 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  129 (210)
                      .....+.++||||++.|.......+.  .+|++++|+|+..+..-. ...++..+..   .++|+++|+||+|+.++...
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA---LNIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence            22346889999999988775555554  789999999998764322 2233333333   26899999999998543211


Q ss_pred             --CHHHHHHHHHH--------------------------cCCeEEEEecCCCCCHHHHHHHHHH
Q 028303          130 --SKEEGEQFAKE--------------------------NGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus       130 --~~~~~~~~~~~--------------------------~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                        ..+++.+++..                          ..+++|.+|+.+|+|++++...|..
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence              11222223221                          1247999999999999998877643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=5e-16  Score=112.64  Aligned_cols=157  Identities=18%  Similarity=0.206  Sum_probs=108.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC----------cchhhhhhH
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSITR   73 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~   73 (210)
                      +...-|+++|.+++|||||||+|++++-..-...|.|.+.....+.+++.   +.+.|.||          .+.+..+..
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~   98 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE   98 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence            45578999999999999999999998755555666677888887877764   66999999          334445566


Q ss_pred             Hhhcc---ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH----cCCe--
Q 028303           74 SYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----NGLL--  144 (210)
Q Consensus        74 ~~~~~---~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~--  144 (210)
                      .|+..   -.++++++|+..+....+. .++..+..   .++|+++++||+|........ ......+..    ....  
T Consensus        99 ~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~  173 (200)
T COG0218          99 EYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQW  173 (200)
T ss_pred             HHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccce
Confidence            66653   3589999999887554332 22333333   389999999999976533322 111222222    1222  


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHH
Q 028303          145 FLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       145 ~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      ++..|+..+.|++++...|.+.+.
T Consensus       174 ~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         174 VVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             EEEEecccccCHHHHHHHHHHHhh
Confidence            778899999999998888877654

>CHL00071 tufA elongation factor Tu

Probab=99.72  E-value=3.9e-16  Score=128.24  Aligned_cols=149  Identities=16%  Similarity=0.114  Sum_probs=99.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      ...++|+++|++++|||||+++|++.....              ......+.+.......+.....++.++||||+..|.
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~   89 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV   89 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence            567999999999999999999998642110              001112444444444454455678899999999888


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCC---CHHHHHHHHHHcC---
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV---SKEEGEQFAKENG---  142 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~---  142 (210)
                      ......+..+|++++|+|+..+..- .....+..+...   ++| +|+++||+|+.+....   ..+++..++...+   
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~  165 (409)
T CHL00071         90 KNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG  165 (409)
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            8778888899999999999875332 222333333322   678 7788999998643221   1124555555433   


Q ss_pred             --CeEEEEecCCCCCH
Q 028303          143 --LLFLEASARTAQNV  156 (210)
Q Consensus       143 --~~~~~~sa~~~~~i  156 (210)
                        ++++++|+.++.++
T Consensus       166 ~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        166 DDIPIVSGSALLALEA  181 (409)
T ss_pred             CcceEEEcchhhcccc
Confidence              67999999998753

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=5.7e-16  Score=126.51  Aligned_cols=159  Identities=20%  Similarity=0.197  Sum_probs=119.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC-EEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ..+-|+++|+...|||||+..+-............+.+.....+..+. ..-.+.|+||||++.|..++..-..-+|.+|
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            346789999999999999999999888777777777777777766652 2336889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEecCCCC
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG---------LLFLEASARTAQ  154 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~~~  154 (210)
                      +|++++++---+.+ ..++.++   ..+.|+++.+||+|.++..   ......-..+++         ..++++||++|+
T Consensus        84 LVVa~dDGv~pQTi-EAI~hak---~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532          84 LVVAADDGVMPQTI-EAINHAK---AAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEEccCCcchhHH-HHHHHHH---HCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            99999985321111 1222333   3489999999999987432   233333333333         458999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 028303          155 NVEEAFIKTAAKILQN  170 (210)
Q Consensus       155 ~i~~~~~~l~~~~~~~  170 (210)
                      |++++++.++-.....
T Consensus       157 Gi~eLL~~ill~aev~  172 (509)
T COG0532         157 GIDELLELILLLAEVL  172 (509)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999987666555

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.72  E-value=2.7e-16  Score=120.58  Aligned_cols=156  Identities=18%  Similarity=0.196  Sum_probs=110.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc----hhhhh---hHHhhccc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----SFRSI---TRSYYRGA   79 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~---~~~~~~~~   79 (210)
                      ..|.++|.|++|||||+++|...+-......+++......++.+++.. .+.+-|.||.-    ....+   ....+..+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence            468899999999999999999876544444444555555555555433 48889999932    11122   23345688


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCC
Q 028303           80 AGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTA  153 (210)
Q Consensus        80 d~~i~V~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~  153 (210)
                      +.++||+|++.+   ..++.+...+.++..+.+  .+.|.++|+||+|+++...   ....+++....- .++++||+.+
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~---~~l~~L~~~lq~~~V~pvsA~~~  352 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK---NLLSSLAKRLQNPHVVPVSAKSG  352 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH---HHHHHHHHHcCCCcEEEeeeccc
Confidence            999999999988   777777777666655544  5789999999999853221   113455555443 3899999999


Q ss_pred             CCHHHHHHHHHHH
Q 028303          154 QNVEEAFIKTAAK  166 (210)
Q Consensus       154 ~~i~~~~~~l~~~  166 (210)
                      +++.+++..|.+.
T Consensus       353 egl~~ll~~lr~~  365 (366)
T KOG1489|consen  353 EGLEELLNGLREL  365 (366)
T ss_pred             cchHHHHHHHhhc
Confidence            9999999887654

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.72  E-value=6.4e-16  Score=115.11  Aligned_cols=159  Identities=11%  Similarity=0.064  Sum_probs=92.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcee---EEEEEEEEECCEEEEEEEEecCCcchhhhh-----hHHhhc
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV---EFGARMVTIDGRPIKLQIWDTAGQESFRSI-----TRSYYR   77 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~   77 (210)
                      .++|+++|++|+|||||+|.|.+.........+.+.   +.....+.... ...+.+|||||.......     ....+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            378999999999999999999986553322222121   11111111111 236889999997543222     222356


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-----------CCHHHHHHHHH----HcC
Q 028303           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-----------VSKEEGEQFAK----ENG  142 (210)
Q Consensus        78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~----~~~  142 (210)
                      .+|++++|.+.. ..  ..-..++..+...   +.|+++|+||+|+.....           ...++.++.+.    ..+
T Consensus        80 ~~d~~l~v~~~~-~~--~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          80 EYDFFIIISSTR-FS--SNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             CcCEEEEEeCCC-CC--HHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            789888885432 11  1122344444443   579999999999832111           11122222222    212


Q ss_pred             ---CeEEEEecC--CCCCHHHHHHHHHHHHHHHH
Q 028303          143 ---LLFLEASAR--TAQNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       143 ---~~~~~~sa~--~~~~i~~~~~~l~~~~~~~~  171 (210)
                         -++|.+|+.  .+.++..+.+.|+..+.+..
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence               358999998  56888888888877776543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.71  E-value=1.9e-16  Score=119.46  Aligned_cols=113  Identities=22%  Similarity=0.210  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC----------------CCCCceeEEEEEEEEEC--------CEEEEEEEEecC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HDLTIGVEFGARMVTID--------GRPIKLQIWDTA   63 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~   63 (210)
                      +|+++|+.++|||||+.+|+.......                .....++......+.+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999975431100                00011111112222232        347789999999


Q ss_pred             CcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        64 G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      |++.|......+++.+|++++|+|+.++........ +.....   .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEECCCcc
Confidence            999999999999999999999999998765443222 222222   368999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.71  E-value=5.3e-16  Score=119.71  Aligned_cols=159  Identities=21%  Similarity=0.180  Sum_probs=109.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc-----chhhh----hhHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ-----ESFRS----ITRSY   75 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----~~~~~----~~~~~   75 (210)
                      ....|+|.|+||+|||||++.++..+......|+++-.....++..  +..+++++||||.     ++.+.    ...+.
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~--~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER--GYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec--CCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            4578999999999999999999998876666666566665555443  4467899999992     11111    12222


Q ss_pred             hccccEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCC
Q 028303           76 YRGAAGALLVYDITR--RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASART  152 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~  152 (210)
                      -+-.++++|++|.+.  +.+.+.-...+..+....  +.|+++|+||.|..+...  .+++.......+. ....+++..
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~  320 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKISATK  320 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhH--HHHHHHHHHhhccccccceeeee
Confidence            334679999999986  455666667778887776  489999999999865333  2344444443333 366788888


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 028303          153 AQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       153 ~~~i~~~~~~l~~~~~~  169 (210)
                      +.+.+.+-..+......
T Consensus       321 ~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         321 GCGLDKLREEVRKTALE  337 (346)
T ss_pred             hhhHHHHHHHHHHHhhc
Confidence            88888777776665443

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.70  E-value=3.3e-16  Score=129.51  Aligned_cols=152  Identities=17%  Similarity=0.146  Sum_probs=103.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCC---------------------------C--CCCCCceeEEEEEEEEECCEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---------------------------P--VHDLTIGVEFGARMVTIDGRP   54 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~~~   54 (210)
                      .+.++|+++|+.++|||||+.+|+...-.                           .  ......+.+.......+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            46799999999999999999988642110                           0  000122344444445556666


Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCC
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR  127 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~  127 (210)
                      ..+.++|+||++.|.......+..+|++|+|+|+.++.-   +   ......+..+...   ++| +|+++||+|+.+..
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~~~~  161 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDATTPK  161 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCCchh
Confidence            789999999999999999999999999999999987421   0   2233333333322   564 68889999975211


Q ss_pred             ------CCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHH
Q 028303          128 ------AVSKEEGEQFAKENG-----LLFLEASARTAQNVEE  158 (210)
Q Consensus       128 ------~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~  158 (210)
                            ....+++..++...+     ++++++|+.+|+|+.+
T Consensus       162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence                  111345666666655     6799999999999854

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.70  E-value=2e-16  Score=122.86  Aligned_cols=114  Identities=19%  Similarity=0.152  Sum_probs=78.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC-----C-----------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQP-----V-----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI   71 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   71 (210)
                      +|+++|++++|||||+++|+...-..     .           .....+.+.......+.....++.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            58999999999999999997421100     0           0011123333333333334567889999999988888


Q ss_pred             hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      +...++.+|++++|+|+.++..... ...+..+..   .++|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            9999999999999999987543222 233333332   3689999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.70  E-value=4.4e-16  Score=129.75  Aligned_cols=153  Identities=20%  Similarity=0.152  Sum_probs=97.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC------------CC-------------------CceeEEEEEEEEECC
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------DL-------------------TIGVEFGARMVTIDG   52 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------~~-------------------~~~~~~~~~~~~~~~   52 (210)
                      ...++|+++|+.++|||||+.+|+...-....            ..                   ..+.+.......+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            45699999999999999999999754211100            00                   112223333333444


Q ss_pred             EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028303           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE  132 (210)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  132 (210)
                      ...++.+|||||++.|.......+..+|++++|+|+..+..-..... +..+....  ..|+|+++||+|+.+......+
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~  181 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SFIATLLG--IKHLVVAVNKMDLVDYSEEVFE  181 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HHHHHHhC--CCceEEEEEeeccccchhHHHH
Confidence            45678899999999887766667799999999999987532211111 11222221  2478899999998643222222


Q ss_pred             HHH----HHHHHc----CCeEEEEecCCCCCHHHH
Q 028303          133 EGE----QFAKEN----GLLFLEASARTAQNVEEA  159 (210)
Q Consensus       133 ~~~----~~~~~~----~~~~~~~sa~~~~~i~~~  159 (210)
                      ++.    .+....    .++++++|++++.|+++.
T Consensus       182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            222    223332    367999999999999864

>cd01850 CDC_Septin CDC/Septin

Probab=99.70  E-value=5.8e-16  Score=120.72  Aligned_cols=143  Identities=17%  Similarity=0.250  Sum_probs=92.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh----
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----   70 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----   70 (210)
                      ..++|+|+|.+|+|||||+|+|++..+...          ...+.........+..++..+.+.+|||||......    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            368999999999999999999998876544          233444555555566678788999999999432211    


Q ss_pred             ----------------------hhHHhhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303           71 ----------------------ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (210)
Q Consensus        71 ----------------------~~~~~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  126 (210)
                                            .+...+.  .+|+++|+++.+... +....  +..+.... .++|+++|+||+|+...
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D--~~~lk~l~-~~v~vi~VinK~D~l~~  158 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLD--IEFMKRLS-KRVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHH--HHHHHHHh-ccCCEEEEEECCCcCCH
Confidence                                  0101222  467888888876421 11110  22222222 26899999999998542


Q ss_pred             --CCCCHHHHHHHHHHcCCeEEEEecC
Q 028303          127 --RAVSKEEGEQFAKENGLLFLEASAR  151 (210)
Q Consensus       127 --~~~~~~~~~~~~~~~~~~~~~~sa~  151 (210)
                        .....+.+.+.+..+++++|.....
T Consensus       159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         159 EELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             HHHHHHHHHHHHHHHHcCCceECCCCC
Confidence              2233455667788889998876553

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.70  E-value=1.2e-15  Score=126.78  Aligned_cols=148  Identities=16%  Similarity=0.105  Sum_probs=98.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCC------CCC--------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR------FQP--------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      .+.++|+++|+.++|||||+++|+...      ...        ......+.+.......++.....+.++|+||++.|.
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~  158 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV  158 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence            457999999999999999999998521      100        011122344443333444445578899999999998


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCC---CHHHHHHHHHHc----
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV---SKEEGEQFAKEN----  141 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~----  141 (210)
                      ......+..+|++++|+|+.++.... ...++..+...   ++| +|+++||+|+.+....   ..+++..++...    
T Consensus       159 ~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~  234 (478)
T PLN03126        159 KNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG  234 (478)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            88888888999999999999764322 23334433333   677 7789999998642211   112444555543    


Q ss_pred             -CCeEEEEecCCCCC
Q 028303          142 -GLLFLEASARTAQN  155 (210)
Q Consensus       142 -~~~~~~~sa~~~~~  155 (210)
                       .++++++|+.++.+
T Consensus       235 ~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        235 DDIPIISGSALLALE  249 (478)
T ss_pred             CcceEEEEEcccccc
Confidence             46799999988754

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.69  E-value=1.1e-15  Score=116.61  Aligned_cols=162  Identities=20%  Similarity=0.188  Sum_probs=107.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh------------hh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------------SI   71 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------------~~   71 (210)
                      .+..+|+|+|+|++|||||.|.+.+.+..+......+++....-+... ...++.++||||--.-.            ..
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~  148 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVLQN  148 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence            467899999999999999999999999988887776666655544333 45689999999921100            11


Q ss_pred             hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-------------CC--HHHHH-
Q 028303           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-------------VS--KEEGE-  135 (210)
Q Consensus        72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~--~~~~~-  135 (210)
                      ....+..+|.+++|+|+++....-+ ...+..+..+.  .+|-|+|.||.|.....-             .+  .-+.+ 
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~  225 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE  225 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence            2234567899999999996322111 12333444443  689999999999743211             11  11111 


Q ss_pred             HHHHHc---------CC----eEEEEecCCCCCHHHHHHHHHHHHHH
Q 028303          136 QFAKEN---------GL----LFLEASARTAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       136 ~~~~~~---------~~----~~~~~sa~~~~~i~~~~~~l~~~~~~  169 (210)
                      .+....         +.    .+|.+||+.|+|++++-++|+..+..
T Consensus       226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence            111111         01    28999999999999999988766543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.69  E-value=5.7e-16  Score=127.12  Aligned_cols=149  Identities=21%  Similarity=0.181  Sum_probs=94.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------------------------------CCCceeEEEEEEEEECCEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH-------------------------------DLTIGVEFGARMVTIDGRPI   55 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   55 (210)
                      ++|+++|+.++|||||+.+|+...-....                               ....+.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            48999999999999999999643211000                               00112223333333434455


Q ss_pred             EEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH---
Q 028303           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE---  132 (210)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---  132 (210)
                      ++.+|||||++.|.......+..+|++++|+|+..+...... ..+..+....  ..++++++||+|+.+......+   
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence            788999999999887777788999999999999875432222 1222222221  2368889999998643221112   


Q ss_pred             -HHHHHHHHcC---CeEEEEecCCCCCHHH
Q 028303          133 -EGEQFAKENG---LLFLEASARTAQNVEE  158 (210)
Q Consensus       133 -~~~~~~~~~~---~~~~~~sa~~~~~i~~  158 (210)
                       +...+....+   ++++++||++|+|+++
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence             2233334333   4699999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=1.7e-16  Score=123.65  Aligned_cols=115  Identities=21%  Similarity=0.236  Sum_probs=77.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----C-----------ceeEEEEEEEEECCEEEEEEEEecCCcchhhhh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----T-----------IGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI   71 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   71 (210)
                      +|+++|++|+|||||+++|+..........     +           .+.+.......+....+.+.+|||||...+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            589999999999999999975432111000     0           011111112222223467889999999888888


Q ss_pred             hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (210)
Q Consensus        72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  126 (210)
                      +..+++.+|++++|+|++++........| ..+..   .++|.++++||+|....
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC
Confidence            88899999999999999986544333222 23332   36899999999998653

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.69  E-value=1e-15  Score=126.71  Aligned_cols=152  Identities=18%  Similarity=0.141  Sum_probs=101.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCC--CC---------------------------CCCCCceeEEEEEEEEECCEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF--QP---------------------------VHDLTIGVEFGARMVTIDGRP   54 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~   54 (210)
                      .+.++|+++|+.++|||||+.+|+...-  ..                           ......+.+.......+....
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            5679999999999999999999875210  00                           000112344444445556666


Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCe-EEEEEecCCCCC--
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLSSWLEDARQHANPNMS-IMLVGNKCDLAH--  125 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~--  125 (210)
                      ..+.|+||||+..|.......+..+|++++|+|+..+..   +   ......+..+...   ++| +|+++||+|...  
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~~  161 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTVN  161 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccch
Confidence            789999999999998888888999999999999987531   0   1233333333333   566 678999999532  


Q ss_pred             CCCCC----HHHHHHHHHHc-----CCeEEEEecCCCCCHHH
Q 028303          126 RRAVS----KEEGEQFAKEN-----GLLFLEASARTAQNVEE  158 (210)
Q Consensus       126 ~~~~~----~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~  158 (210)
                      ..+..    .+++..++...     .++++++|+.+|+|+.+
T Consensus       162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            11111    23344444433     36799999999999864

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.69  E-value=1.2e-15  Score=128.35  Aligned_cols=116  Identities=20%  Similarity=0.182  Sum_probs=81.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (210)
                      ..-+|+++|++++|||||+++|+...-...                    .....+.++......+....+.+.+|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            446999999999999999999974211000                    001123334444444455567899999999


Q ss_pred             cchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      +..|......+++.+|++|+|+|++++... ....++.....   .++|+++++||+|+.
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence            999988788889999999999999875422 23334433332   379999999999974

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.68  E-value=6.4e-16  Score=127.65  Aligned_cols=163  Identities=17%  Similarity=0.142  Sum_probs=103.8

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCC--CceeEEEEEE-------------EEECC------------
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRF---QPVHDL--TIGVEFGARM-------------VTIDG------------   52 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~-------------~~~~~------------   52 (210)
                      .+..++|+++|+...|||||+.+|++...   .++...  |...-+....             ...+.            
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            36779999999999999999999996432   111111  1111111000             00000            


Q ss_pred             ----EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           53 ----RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        53 ----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                          ....+.++|+||++.|.......+..+|++++|+|+.++..-......+..+....  -.|+|+++||+|+.+...
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~  188 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQ  188 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHH
Confidence                02368899999999998888888889999999999997421122223333222221  236889999999864221


Q ss_pred             --CCHHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          129 --VSKEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       129 --~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                        ...++++++...   ...+++++||+++.|++.+++.|.+.+
T Consensus       189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence              112333343332   357899999999999999888887644

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=5.2e-16  Score=126.46  Aligned_cols=160  Identities=21%  Similarity=0.237  Sum_probs=115.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------------CCCceeEEEEEE--E-EECCEEEEEEEEecCCcch
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-------------DLTIGVEFGARM--V-TIDGRPIKLQIWDTAGQES   67 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-------------~~~~~~~~~~~~--~-~~~~~~~~~~i~D~~G~~~   67 (210)
                      ++.-++.++.+...|||||..+|+...-....             ....+++....+  + ..++..+.++++||||+.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            45568899999999999999999754221000             011123332222  2 2236668999999999999


Q ss_pred             hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHHHcCCeEE
Q 028303           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAKENGLLFL  146 (210)
Q Consensus        68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~  146 (210)
                      |.......+..||++++|+|+..+..-+.+..++..+..    +..+|.|+||+|++..+. .-..+..+.+.....+++
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i  213 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI  213 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence            999999999999999999999998776666666655543    688999999999976432 122344555555566799


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q 028303          147 EASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       147 ~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      .+||++|.++.++|+.|++.+
T Consensus       214 ~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  214 YVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             EEEeccCccHHHHHHHHHhhC
Confidence            999999999999777766654

>PRK00049 elongation factor Tu; Reviewed

Probab=99.68  E-value=2.8e-15  Score=122.69  Aligned_cols=147  Identities=17%  Similarity=0.157  Sum_probs=97.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCC------C--------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ------P--------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      .+.++|+++|+.++|||||+++|++....      .        ......+.+.......+.....++.++||||+..|.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence            46799999999999999999999863110      0        001122444444445554455678899999998888


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEecCCCCCCCCC---CHHHHHHHHHHc----
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAV---SKEEGEQFAKEN----  141 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~----  141 (210)
                      ......+..+|++++|+|+.++... ....++..+...   ++|.+ +++||+|+.+....   ...++..++...    
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  165 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG  165 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence            7777788999999999999875332 223333333332   67876 57999998642211   112344444443    


Q ss_pred             -CCeEEEEecCCCC
Q 028303          142 -GLLFLEASARTAQ  154 (210)
Q Consensus       142 -~~~~~~~sa~~~~  154 (210)
                       .++++++|+.++.
T Consensus       166 ~~~~iv~iSa~~g~  179 (396)
T PRK00049        166 DDTPIIRGSALKAL  179 (396)
T ss_pred             cCCcEEEeeccccc
Confidence             3679999999875

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.67  E-value=5.7e-15  Score=113.76  Aligned_cols=153  Identities=23%  Similarity=0.181  Sum_probs=110.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-------hhhhHHhhcc
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------RSITRSYYRG   78 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~   78 (210)
                      ..+++++|+|++|||||+++|++........++++.+..+..+.+++  ..+++.|+||.-+-       .......++.
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            46899999999999999999999887776666667777777777776  45789999983211       1345567899


Q ss_pred             ccEEEEEEECCChhh-HHHHHHHHHH------------------------------------------------------
Q 028303           79 AAGALLVYDITRRET-FNHLSSWLED------------------------------------------------------  103 (210)
Q Consensus        79 ~d~~i~V~d~~~~~s-~~~~~~~~~~------------------------------------------------------  103 (210)
                      +|++|+|+|+..... .+-+...+..                                                      
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999986554 3333333320                                                      


Q ss_pred             --------H---HhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          104 --------A---RQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       104 --------~---~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                              +   ......-+|.++|.||.|+..     .++...+.+..  .++++||+.+.|++++.+.|.+.+
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                    0   000011479999999999743     44555555444  689999999999999988877654

>PLN03127 Elongation factor Tu; Provisional

Probab=99.65  E-value=6.4e-15  Score=121.86  Aligned_cols=144  Identities=15%  Similarity=0.117  Sum_probs=91.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhC------CCCCC--------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDK------RFQPV--------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      .+.++|+++|+.++|||||+++|.+.      .....        .....+.+.......++....++.++||||+..|.
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~  138 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV  138 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence            45699999999999999999999732      10000        01112344444445555555678899999999887


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCCC---HHHHHHHHHHc----
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---KEEGEQFAKEN----  141 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~----  141 (210)
                      ......+..+|++++|+|+.++.... ....+..+...   ++| +|+++||+|+.+.....   .+++.+++...    
T Consensus       139 ~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~  214 (447)
T PLN03127        139 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPG  214 (447)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            77777777899999999998753322 22333333332   678 47889999986422211   11233333322    


Q ss_pred             -CCeEEEEecC
Q 028303          142 -GLLFLEASAR  151 (210)
Q Consensus       142 -~~~~~~~sa~  151 (210)
                       .++++++|+.
T Consensus       215 ~~vpiip~Sa~  225 (447)
T PLN03127        215 DEIPIIRGSAL  225 (447)
T ss_pred             CcceEEEeccc
Confidence             3678888875

>PRK13351 elongation factor G; Reviewed

Probab=99.65  E-value=3e-15  Score=130.51  Aligned_cols=118  Identities=17%  Similarity=0.163  Sum_probs=82.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCC-------------CCCC---CceeEEEEEEEEECCEEEEEEEEecCCcch
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-------------VHDL---TIGVEFGARMVTIDGRPIKLQIWDTAGQES   67 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   67 (210)
                      +...+|+|+|+.++|||||+++|+...-..             .+.+   ..+.+.......+......+.+|||||+..
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            345799999999999999999998532100             0000   011222222222333457889999999999


Q ss_pred             hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      +...+..+++.+|++++|+|++++........| ..+..   .++|+++++||+|+..
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            998899999999999999999987665544333 33332   3789999999999853

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.65  E-value=1.1e-14  Score=99.40  Aligned_cols=106  Identities=21%  Similarity=0.167  Sum_probs=69.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh---------hhhhHHhhc
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF---------RSITRSYYR   77 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~   77 (210)
                      +|+|+|.+|+|||||+|+|++..... ...+..+.......+.+++..  +.++||||....         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            68999999999999999999864322 122222333333445566655  469999995321         112333448


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEec
Q 028303           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK  120 (210)
Q Consensus        78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  120 (210)
                      .+|++++|+|++++.. +.....+..+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            8999999999887422 22333344442    47899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=9.9e-15  Score=119.11  Aligned_cols=155  Identities=19%  Similarity=0.143  Sum_probs=118.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ...-|.+||+..-|||||+..|-+..........++.......+.++.+ -.++|.||||+..|..++..-..-.|.+++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            4467899999999999999999999887777777777777777777744 578999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEecCCCCC
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG---------LLFLEASARTAQN  155 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~~~~  155 (210)
                      |+.++|+---    +....+......++|+|+.+||+|.++   .+.+.+.+-...++         +.++++||++|.|
T Consensus       231 VVAadDGVmp----QT~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n  303 (683)
T KOG1145|consen  231 VVAADDGVMP----QTLEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN  303 (683)
T ss_pred             EEEccCCccH----hHHHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence            9999985321    222222222334899999999999764   33344444433333         4689999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          156 VEEAFIKTAAKI  167 (210)
Q Consensus       156 i~~~~~~l~~~~  167 (210)
                      ++.+.+.+.-+.
T Consensus       304 l~~L~eaill~A  315 (683)
T KOG1145|consen  304 LDLLEEAILLLA  315 (683)
T ss_pred             hHHHHHHHHHHH
Confidence            999888765443

>TIGR00503 prfC peptide chain release factor 3

Probab=99.65  E-value=9.9e-15  Score=122.83  Aligned_cols=117  Identities=19%  Similarity=0.195  Sum_probs=82.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCceeEEEEEEEEECCEEEEEEEEecC
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTA   63 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   63 (210)
                      ....+|+|+|++++|||||+++|+...-...                    .....+.+.......++...+.+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            3456999999999999999999863211000                    00122444444445556667889999999


Q ss_pred             CcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        64 G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      |+..|.......++.+|++|+|+|+++... .....++.....   .++|+++++||+|+.
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~  145 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD  145 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence            999888877778899999999999987522 223344443332   368999999999974

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.64  E-value=5.3e-15  Score=127.76  Aligned_cols=152  Identities=20%  Similarity=0.156  Sum_probs=95.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCC------------CCC-------------------CceeEEEEEEEEECC
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV------------HDL-------------------TIGVEFGARMVTIDG   52 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------------~~~-------------------~~~~~~~~~~~~~~~   52 (210)
                      ...++|+++|++++|||||+++|+...-.-.            ...                   ..+.+.......+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            3468999999999999999999986432111            000                   012222222233333


Q ss_pred             EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028303           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE  132 (210)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  132 (210)
                      ...++.++||||++.|.......+..+|++++|+|+..+..... ...+..+....  ..|+++++||+|+.+......+
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~~~  178 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG--IRHVVLAVNKMDLVDYDQEVFD  178 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC--CCeEEEEEEecccccchhHHHH
Confidence            44567899999999887766677889999999999987543221 12222222221  2578899999998642221122


Q ss_pred             ----HHHHHHHHcC---CeEEEEecCCCCCHHH
Q 028303          133 ----EGEQFAKENG---LLFLEASARTAQNVEE  158 (210)
Q Consensus       133 ----~~~~~~~~~~---~~~~~~sa~~~~~i~~  158 (210)
                          ++..+....+   ++++++||+++.|+.+
T Consensus       179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                2233334444   4589999999999874

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.64  E-value=8.4e-15  Score=115.94  Aligned_cols=81  Identities=20%  Similarity=0.225  Sum_probs=54.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEE---------------------ECC-EEEEEEEEecCCc-
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT---------------------IDG-RPIKLQIWDTAGQ-   65 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G~-   65 (210)
                      |+++|.+++|||||+++|++........+..+.+.......                     +++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            58999999999999999998875332222222222222111                     122 3367999999997 


Q ss_pred             ---chhhhhhHH---hhccccEEEEEEECC
Q 028303           66 ---ESFRSITRS---YYRGAAGALLVYDIT   89 (210)
Q Consensus        66 ---~~~~~~~~~---~~~~~d~~i~V~d~~   89 (210)
                         +.+..+...   .++.+|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               444444444   489999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.64  E-value=1.1e-14  Score=108.43  Aligned_cols=159  Identities=17%  Similarity=0.167  Sum_probs=93.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CCceeEEEEEEEEECCEEEEEEEEecCCcchhhh--------h---hH
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------I---TR   73 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~---~~   73 (210)
                      ++|+++|.+|+|||||+|.+++........  ...+.........+.+  ..+.++||||......        +   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999886544332  1222333333333444  4688999999543211        1   12


Q ss_pred             HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCC------CHHHHHHHHHHcCCeE
Q 028303           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAV------SKEEGEQFAKENGLLF  145 (210)
Q Consensus        74 ~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~  145 (210)
                      ...+..|++++|+++.+ .+..+ ...+..+.....  .-.++++++|+.|......+      .....+.+....+-.+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            23467899999999987 22222 222333333322  12578899999996543211      1123344444445556


Q ss_pred             EEEecC-----CCCCHHHHHHHHHHHHHH
Q 028303          146 LEASAR-----TAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       146 ~~~sa~-----~~~~i~~~~~~l~~~~~~  169 (210)
                      +..+.+     .+.++.++++.+.+.+..
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            555543     456677777666665544

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=1.7e-15  Score=105.56  Aligned_cols=155  Identities=18%  Similarity=0.244  Sum_probs=113.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      .+.-|++++|-.++|||||++.|.+++....-+ |  .+.....+.+.  +.+++.+|.+|+...+..|..++..+|+++
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP-T--lHPTSE~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv   92 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP-T--LHPTSEELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIV   92 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccccCC-C--cCCChHHheec--CceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence            445689999999999999999999887644322 2  12222224444  467889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHH---HHc--------------CCeE
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFA---KEN--------------GLLF  145 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---~~~--------------~~~~  145 (210)
                      +.+|+.+.+.+.+.+..+..+..... ..+|+++.+||+|.+...  +.++.+...   +..              .+.+
T Consensus        93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev  170 (193)
T KOG0077|consen   93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV  170 (193)
T ss_pred             eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence            99999999999888877776655442 579999999999987533  444433211   111              1236


Q ss_pred             EEEecCCCCCHHHHHHHHHH
Q 028303          146 LEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus       146 ~~~sa~~~~~i~~~~~~l~~  165 (210)
                      +.||...+.+.-+.|.++.+
T Consensus       171 fmcsi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  171 FMCSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             EEEEEEccCccceeeeehhh
Confidence            77887777777777766544

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.63  E-value=4.9e-15  Score=111.92  Aligned_cols=161  Identities=19%  Similarity=0.259  Sum_probs=106.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEE-EEECCEEEEEEEEecCCcch-------hhhhhHHh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM-VTIDGRPIKLQIWDTAGQES-------FRSITRSY   75 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~   75 (210)
                      ...++|+++|.+|+|||||+|+|+.....+...-..+.+..... ..+++  -.+.|||+||-++       +..+...+
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence            35689999999999999999999976655544222222222221 23344  3578999999543       66778888


Q ss_pred             hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC-------CCCHHHHHHHHHH--------
Q 028303           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR-------AVSKEEGEQFAKE--------  140 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~~~~~~~--------  140 (210)
                      +...|++++++++.++.---+...|...+...  .+.++++++|.+|....-       ......++++...        
T Consensus       115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhhccEEEEeccCCCccccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999875433333333333222  247999999999985421       1111112222211        


Q ss_pred             --cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          141 --NGLLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       141 --~~~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                        .-.|++.++...+.|++++...++..+.
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence              1246788888999999999988887765

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.62  E-value=1.5e-14  Score=112.27  Aligned_cols=164  Identities=17%  Similarity=0.120  Sum_probs=108.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh----hhhhH---Hhhccc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----RSITR---SYYRGA   79 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~---~~~~~~   79 (210)
                      .-|.++|.|++|||||++.++..+--....++++....-..+.+.. .-.|.+=|.||.-+-    ..+-.   ..+.++
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            3478999999999999999998765444444445555555555532 335778999993211    11222   345578


Q ss_pred             cEEEEEEECCChh---hHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe-EEEEecCCC
Q 028303           80 AGALLVYDITRRE---TFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTA  153 (210)
Q Consensus        80 d~~i~V~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~  153 (210)
                      .++++|+|++..+   ..++......++..+..  .+.|.++|+||+|+....+........+....+.. .+.+|+.++
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            8999999998643   35555556666655543  57899999999997543322222233333333333 222999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 028303          154 QNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       154 ~~i~~~~~~l~~~~~~~~  171 (210)
                      .+++++...+.+.+....
T Consensus       319 ~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         319 EGLDELLRALAELLEETK  336 (369)
T ss_pred             cCHHHHHHHHHHHHHHhh
Confidence            999999999888877775

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.61  E-value=3.7e-15  Score=108.02  Aligned_cols=116  Identities=22%  Similarity=0.365  Sum_probs=71.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEecCCcchhhhhhHH---hhccccE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRS---YYRGAAG   81 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~   81 (210)
                      .-.|+++|+.|+|||+|+.+|..+...+..... .....   +.+ ......+.++|+||+...+.....   +...+.+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            357899999999999999999998553333322 11111   112 123336789999999987764444   4788999


Q ss_pred             EEEEEECCC-hhhHHHHHHHHHHHHhhc---CCCCeEEEEEecCCCCC
Q 028303           82 ALLVYDITR-RETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        82 ~i~V~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~  125 (210)
                      +|||+|++. ......+..++..+....   ....|++|+.||.|+..
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            999999985 344555555544443222   36799999999999854

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.61  E-value=1.9e-14  Score=115.82  Aligned_cols=159  Identities=23%  Similarity=0.240  Sum_probs=114.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCC---------------CCCCCCCceeEEEEEEEEE---CCEEEEEEEEecCCc
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF---------------QPVHDLTIGVEFGARMVTI---DGRPIKLQIWDTAGQ   65 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   65 (210)
                      ++.-+..++.+-..|||||..||+...-               .-+.....++......+.+   ++..+.++++||||+
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            4455788999999999999999975311               1112222233333333322   557899999999999


Q ss_pred             chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe-
Q 028303           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-  144 (210)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-  144 (210)
                      -.|.......+..|.+.++|+|++.+..-+.+.+.+..+..    +.-+|.|+||+|++....  ..-..++-+-.+++ 
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~  160 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDA  160 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCc
Confidence            99998888888899999999999998776777776666644    678999999999976332  12222333334543 


Q ss_pred             --EEEEecCCCCCHHHHHHHHHHHHH
Q 028303          145 --FLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       145 --~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                        .+.+|||+|.|++++++.|++++.
T Consensus       161 ~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         161 SDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             chheeEecccCCCHHHHHHHHHhhCC
Confidence              789999999999998888777654

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=1.9e-14  Score=114.31  Aligned_cols=155  Identities=19%  Similarity=0.133  Sum_probs=104.1

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCC--C---------------C------------CCCCCceeEEEEEEEEECCE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRF--Q---------------P------------VHDLTIGVEFGARMVTIDGR   53 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~---------------~------------~~~~~~~~~~~~~~~~~~~~   53 (210)
                      ..+.++++++|+..+|||||+-+|+...-  .               .            ....-.+.+.......++..
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            46779999999999999999999864310  0               0            01112245555555566666


Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHH------HHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH------LSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                      .+.++|+|+||+..|-......+.++|+.|+|+|+.+++....      .+......+.. + -..+||++||+|..+-.
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-G-i~~lIVavNKMD~v~wd  161 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-G-IKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-C-CceEEEEEEcccccccC
Confidence            7789999999999999988889999999999999998742111      22222222222 1 24678889999987644


Q ss_pred             CCCHHHHHH----HHHHc-----CCeEEEEecCCCCCHHHH
Q 028303          128 AVSKEEGEQ----FAKEN-----GLLFLEASARTAQNVEEA  159 (210)
Q Consensus       128 ~~~~~~~~~----~~~~~-----~~~~~~~sa~~~~~i~~~  159 (210)
                      +...+++..    +.+..     .++|+++|+..|+|+.+.
T Consensus       162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            333343332    22222     366999999999987653

>PRK12739 elongation factor G; Reviewed

Probab=99.59  E-value=5.2e-14  Score=122.68  Aligned_cols=116  Identities=16%  Similarity=0.104  Sum_probs=81.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCC-----C-------------CCCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-----P-------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (210)
                      +...+|+++|++++|||||+++|+...-.     .             +.....+.+.....+.++  ..++.+|||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence            45679999999999999999999752110     0             011222333333334444  457889999999


Q ss_pred             chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      ..+...+...++.+|++++|+|+.++...... ..+..+..   .++|+|+++||+|+..
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            88888888999999999999999886443322 22333332   3689999999999863

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.58  E-value=1.4e-14  Score=96.45  Aligned_cols=136  Identities=21%  Similarity=0.189  Sum_probs=95.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc----hhhhhhHHhhccccEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----SFRSITRSYYRGAAGAL   83 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i   83 (210)
                      |++++|..|+|||||.+.|.+...  .+..|..       +.++...    .+||||.-    .+..........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQA-------ve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQA-------VEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccce-------eeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            789999999999999999997753  2333322       2232222    57999943    22223344557899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~  162 (210)
                      +|-.++++++.-.     ..+....  ..|+|-|++|.|+.+  ..+.+..+.+..+-|. ++|++|+.++.|+++++++
T Consensus        70 ~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccCC-----ccccccc--ccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            9999999865211     1111111  456999999999986  3345667788888775 4999999999999999998


Q ss_pred             HHH
Q 028303          163 TAA  165 (210)
Q Consensus       163 l~~  165 (210)
                      |..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            865

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.58  E-value=5e-14  Score=122.78  Aligned_cols=114  Identities=19%  Similarity=0.114  Sum_probs=80.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCC-----CC-------------CCCceeEEEEEEEEECCEEEEEEEEecCCcch
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-----VH-------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQES   67 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   67 (210)
                      .-+|+++|++++|||||+++|+...-..     ..             ....+.......+.++  ...+.+|||||+..
T Consensus        10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~~~   87 (689)
T TIGR00484        10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGHVD   87 (689)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCCcc
Confidence            4599999999999999999997422110     00             1112233333333343  56789999999998


Q ss_pred             hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      +...+...++.+|++++|+|+.++...... .++..+..   .++|+++++||+|+..
T Consensus        88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            888888899999999999999986544433 22333332   3689999999999865

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.57  E-value=2.1e-13  Score=111.15  Aligned_cols=83  Identities=20%  Similarity=0.253  Sum_probs=56.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEE---------------------C-CEEEEEEEEecCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI---------------------D-GRPIKLQIWDTAG   64 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G   64 (210)
                      ++|+++|.|++|||||+++|++........+..+.+.......+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999988765422233333333322221                     1 1235789999999


Q ss_pred             c----chhhhhhHHh---hccccEEEEEEECC
Q 028303           65 Q----ESFRSITRSY---YRGAAGALLVYDIT   89 (210)
Q Consensus        65 ~----~~~~~~~~~~---~~~~d~~i~V~d~~   89 (210)
                      .    +....+...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    2333444444   88999999999996

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=2.4e-14  Score=115.63  Aligned_cols=167  Identities=22%  Similarity=0.207  Sum_probs=106.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch-hhh--------hhHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRS--------ITRSY   75 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~--------~~~~~   75 (210)
                      .-++|+++|+||+|||||+|.|......-..+.+ +++....+..++-..+.+.|.||+|-.+ -..        .....
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            3489999999999999999999998776654443 4444444444444456788999999554 111        23345


Q ss_pred             hccccEEEEEEECCC--hhhHHHHHHHHHHHHhhcC------CCCeEEEEEecCCCCCC-CCCCHHHHHHHHHHc---CC
Q 028303           76 YRGAAGALLVYDITR--RETFNHLSSWLEDARQHAN------PNMSIMLVGNKCDLAHR-RAVSKEEGEQFAKEN---GL  143 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~--~~s~~~~~~~~~~~~~~~~------~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~---~~  143 (210)
                      +..+|++++|+|+..  -++...+...+........      ...|++++.||.|+... ...... ...+....   ..
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~~~  424 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRSVF  424 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccCccc
Confidence            678999999999943  3332233333333322111      24789999999998653 111110 11111111   12


Q ss_pred             e-EEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303          144 L-FLEASARTAQNVEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       144 ~-~~~~sa~~~~~i~~~~~~l~~~~~~~~~~  173 (210)
                      + +.++|+++++++.++.+.|...+......
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~~  455 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVERLVVS  455 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHHhhcC
Confidence            3 45699999999999999988877766653

>PRK09866 hypothetical protein; Provisional

Probab=99.56  E-value=5.5e-13  Score=112.00  Aligned_cols=108  Identities=16%  Similarity=0.160  Sum_probs=72.7

Q ss_pred             EEEEEecCCcch-----hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC
Q 028303           56 KLQIWDTAGQES-----FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS  130 (210)
Q Consensus        56 ~~~i~D~~G~~~-----~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  130 (210)
                      ++.++||||-..     ........+..+|+++||+|+....+..+. .....+... ....|+++|+||+|+.++....
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~-~K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAV-GQSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence            567899999643     233344578999999999999875433321 223333332 2235999999999986433333


Q ss_pred             HHHHHHHHH----HcC---CeEEEEecCCCCCHHHHHHHHHH
Q 028303          131 KEEGEQFAK----ENG---LLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus       131 ~~~~~~~~~----~~~---~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      .+.+..+..    ...   ..+|++||+.+.|++++++.|..
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            455555432    212   35999999999999999998876

>cd00066 G-alpha G protein alpha subunit

Probab=99.54  E-value=2.6e-13  Score=107.98  Aligned_cols=119  Identities=21%  Similarity=0.260  Sum_probs=84.9

Q ss_pred             EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCCh----------hhHHHHHHHHHHHHhhcC-CCCeEEEEEecC
Q 028303           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLEDARQHAN-PNMSIMLVGNKC  121 (210)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~  121 (210)
                      ..+.+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....+..+..... .+.|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            456789999999999999999999999999999999874          223333334444333222 578999999999


Q ss_pred             CCCCC----------------CCCCHHHHHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303          122 DLAHR----------------RAVSKEEGEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       122 D~~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~  171 (210)
                      |+..+                ...+.+.+..+...          ..+..+.++|.+-.++..+|+.+.+.++...
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            96321                12234455444432          1234568889999999999999888887765

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=4.9e-13  Score=97.31  Aligned_cols=113  Identities=17%  Similarity=0.267  Sum_probs=78.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhc---cccEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR---GAAGAL   83 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i   83 (210)
                      -.|+++|+.+||||+|+-+|..+.+.....   .++.....+.+....  ++++|.||+...+.-...+++   .+-+++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            468999999999999999998875433322   223333334444333  789999999988876666666   788999


Q ss_pred             EEEECCCh-hhHHHHHHHHHHHHhhc---CCCCeEEEEEecCCCC
Q 028303           84 LVYDITRR-ETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLA  124 (210)
Q Consensus        84 ~V~d~~~~-~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~  124 (210)
                      ||+|+... ....++..++..+....   ..+.|++++.||.|+.
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF  158 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence            99998753 23444555544443333   4678999999999984

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.51  E-value=2.3e-13  Score=119.00  Aligned_cols=117  Identities=19%  Similarity=0.200  Sum_probs=81.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhC---------------CCCCC---CCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDK---------------RFQPV---HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (210)
                      ++..+|+++|+.++|||||+++|+..               .+.+.   ...|.........+.+++..+.+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            34579999999999999999999752               11111   1112222222223345677789999999999


Q ss_pred             chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      ..|.......++.+|++++|+|+.++........| ..+..   .+.|+++++||+|..
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~  151 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRL  151 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhcc
Confidence            99888888999999999999999875432222222 22222   367889999999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK12740 elongation factor G; Reviewed

Probab=99.51  E-value=5.1e-13  Score=116.41  Aligned_cols=107  Identities=21%  Similarity=0.221  Sum_probs=74.0

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCCC------------------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhH
Q 028303           12 IGDTGVGKSCLLLQFTDKRFQPV------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR   73 (210)
Q Consensus        12 ~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   73 (210)
                      +|++++|||||+++|+...-...                  .....+.......+.+  ..+.+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHHHHHH
Confidence            69999999999999964321100                  0112222222233333  356799999999998888888


Q ss_pred             HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        74 ~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      ..+..+|++++|+|+++.........| ..+..   .++|+++|+||+|+.
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence            889999999999999987654433332 33322   368999999999975

>PRK00007 elongation factor G; Reviewed

Probab=99.50  E-value=5.3e-13  Score=116.36  Aligned_cols=115  Identities=17%  Similarity=0.100  Sum_probs=79.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCC--C---C-------------CCCCceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ--P---V-------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (210)
                      ...+|+++|++++|||||+++|+...-.  .   .             .....+.+.....+.+.  ..++.++||||+.
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~~   86 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGHV   86 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCcH
Confidence            3569999999999999999999742110  0   0             11122333333334444  4678899999998


Q ss_pred             hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      .+.......++.+|++++|+|+..+....... .+..+..   .++|+++++||+|+..
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence            88777888889999999999998765433332 2333333   2689999999999875

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.49  E-value=1.7e-12  Score=115.79  Aligned_cols=145  Identities=26%  Similarity=0.259  Sum_probs=99.0

Q ss_pred             CHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEE----------------EEEEEEecCCcchhhhhhHHhhccccE
Q 028303           18 GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP----------------IKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus        18 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      +||||+.++.+..........++.+.....+..+...                -.+.+|||||++.|..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            4999999999988876666665666555555544211                127899999999998888888889999


Q ss_pred             EEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC----------------HHHHH----HH-
Q 028303           82 ALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS----------------KEEGE----QF-  137 (210)
Q Consensus        82 ~i~V~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----------------~~~~~----~~-  137 (210)
                      +++|+|++++   .++..+    ..+..   .++|+++++||+|+.......                .++..    ++ 
T Consensus       553 vlLVVDa~~Gi~~qT~e~I----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAI----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHHH----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            9999999873   333332    22222   268999999999985321100                01110    00 


Q ss_pred             --HHH---------------cCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 028303          138 --AKE---------------NGLLFLEASARTAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       138 --~~~---------------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~  169 (210)
                        +..               ..++++++||++|+|+++++..|..+...
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~  674 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK  674 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence              111               13579999999999999999887655443

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.49  E-value=2.7e-12  Score=99.17  Aligned_cols=160  Identities=16%  Similarity=0.306  Sum_probs=116.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC--CEEEEEEEEecCCcchhhhhhHHhhccc----c
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--GRPIKLQIWDTAGQESFRSITRSYYRGA----A   80 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~----d   80 (210)
                      -+|+|+|+.++|||||+.+|-+..   ...+..+..+....+.-+  +...++.+|-.-|+-....+....+...    .
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            479999999999999999998775   344444555555444332  2334788999999887777777777655    3


Q ss_pred             EEEEEEECCChhh-HHHHHHHHHHHHhhcC--------------------------------------------------
Q 028303           81 GALLVYDITRRET-FNHLSSWLEDARQHAN--------------------------------------------------  109 (210)
Q Consensus        81 ~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~--------------------------------------------------  109 (210)
                      ++|++.|+++|.. ++.+..|...+..+..                                                  
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l  209 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL  209 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence            8999999999955 4556666553322111                                                  


Q ss_pred             -----------CCCeEEEEEecCCC----CCCCCCC-------HHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          110 -----------PNMSIMLVGNKCDL----AHRRAVS-------KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       110 -----------~~~p~ivv~nK~D~----~~~~~~~-------~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                                 .++|++||.||+|.    +.+.+..       ...++.||..++..++.+|++...|++-+..+|.++.
T Consensus       210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence                       16899999999998    2222221       2346788999999999999999999999999998876


Q ss_pred             HH
Q 028303          168 LQ  169 (210)
Q Consensus       168 ~~  169 (210)
                      .-
T Consensus       290 yG  291 (473)
T KOG3905|consen  290 YG  291 (473)
T ss_pred             cC
Confidence            53

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.48  E-value=3.9e-13  Score=108.89  Aligned_cols=167  Identities=14%  Similarity=0.103  Sum_probs=117.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc-----hhhh----hhHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-----SFRS----ITRSY   75 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~----~~~~~   75 (210)
                      ..-+++|+|.|++|||||++.++.........++++......+  ++.+..+|+++||||.-     ..+.    .....
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            4568899999999999999999987766655555455444443  45556789999999931     1111    11222


Q ss_pred             hccccEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHH---HHHHHHHcCCeEEEEec
Q 028303           76 YRGAAGALLVYDITR--RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE---GEQFAKENGLLFLEASA  150 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~sa  150 (210)
                      .+--.+|+|+.|++.  +.|...-...|..+..... +.|+|+|+||+|......++.+.   ...+....+++++++|+
T Consensus       245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~  323 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC  323 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence            333347999999986  4566666667777766553 67999999999997666655443   23334444589999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhc
Q 028303          151 RTAQNVEEAFIKTAAKILQNIQEG  174 (210)
Q Consensus       151 ~~~~~i~~~~~~l~~~~~~~~~~~  174 (210)
                      .+.+|+-++-...++.++...=++
T Consensus       324 ~~eegVm~Vrt~ACe~LLa~RVE~  347 (620)
T KOG1490|consen  324 VQEEGVMDVRTTACEALLAARVEQ  347 (620)
T ss_pred             cchhceeeHHHHHHHHHHHHHHHH
Confidence            999999998887777766655443

>smart00275 G_alpha G protein alpha subunit

Probab=99.48  E-value=3.2e-12  Score=102.60  Aligned_cols=119  Identities=19%  Similarity=0.244  Sum_probs=83.9

Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChh----------hHHHHHHHHHHHHhhcC-CCCeEEEEEecCC
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLSSWLEDARQHAN-PNMSIMLVGNKCD  122 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D  122 (210)
                      ...+.+||.+|+...+..|..++.+++++|||+|+++.+          .+......+..+..... .+.|+++++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            456789999999999999999999999999999999742          23344444444433222 5789999999999


Q ss_pred             CCCC--------------C-CCCHHHHHHHHHH-----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028303          123 LAHR--------------R-AVSKEEGEQFAKE-----------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       123 ~~~~--------------~-~~~~~~~~~~~~~-----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~  172 (210)
                      +..+              . ..+.+.+..+...           ..+..+.++|.+-.++..+|+.+...++....
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l  338 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL  338 (342)
T ss_pred             hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence            7321              1 1233444443332           12345688899999999999998888777654

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.47  E-value=1.7e-12  Score=99.68  Aligned_cols=118  Identities=20%  Similarity=0.271  Sum_probs=71.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEecCCcchhh--h--------hh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--S--------IT   72 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~--------~~   72 (210)
                      +..++|+|+|.+|+|||||+|+|++......... ..+..........++  ..+.+|||||..+..  .        ..
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            4579999999999999999999999875443222 223333333333444  568899999965442  1        11


Q ss_pred             HHhhc--cccEEEEEEECCChh-hHHHHHHHHHHHHhhcCC--CCeEEEEEecCCCC
Q 028303           73 RSYYR--GAAGALLVYDITRRE-TFNHLSSWLEDARQHANP--NMSIMLVGNKCDLA  124 (210)
Q Consensus        73 ~~~~~--~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~  124 (210)
                      ..++.  ..|+++||..++... ...+ ...+..+....+.  -.++++|.||+|..
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~  162 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence            22332  568888887666432 1111 1223333322221  25799999999985

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.46  E-value=1.2e-12  Score=98.58  Aligned_cols=161  Identities=18%  Similarity=0.182  Sum_probs=88.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CCceeEEEEEEEEECCEEEEEEEEecCCcchhh-------h-h---hH
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------S-I---TR   73 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~-~---~~   73 (210)
                      ++|+|+|.+|+||||++|.+++........  ...+.........+++  ..+.++||||..+..       . +   ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999988755442  2223333344445666  457799999932211       1 1   11


Q ss_pred             HhhccccEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC-------HHHHHHHHHHcCCeE
Q 028303           74 SYYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-------KEEGEQFAKENGLLF  145 (210)
Q Consensus        74 ~~~~~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~  145 (210)
                      ...+..|++++|+.+..... ...+..++..+.... .-..++||+|..|......+.       ....+.+....+-.|
T Consensus        79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~  157 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY  157 (212)
T ss_dssp             HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred             hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence            23457899999999983211 112222333332211 124688889988865443311       012344555556678


Q ss_pred             EEEecC------CCCCHHHHHHHHHHHHHHH
Q 028303          146 LEASAR------TAQNVEEAFIKTAAKILQN  170 (210)
Q Consensus       146 ~~~sa~------~~~~i~~~~~~l~~~~~~~  170 (210)
                      +..+.+      ....+.++|+.+-+.+...
T Consensus       158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  158 HVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             EECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            777766      2245666666655554443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=2.8e-13  Score=104.33  Aligned_cols=163  Identities=18%  Similarity=0.151  Sum_probs=111.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCceeEEEEEEE------------------EEC------CEEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMV------------------TID------GRPIK   56 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~------------------~~~------~~~~~   56 (210)
                      +..++|.++|+..-|||||.++|++--   +.++.....++.......                  ...      .-..+
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            468999999999999999999998642   111111111111111100                  001      12347


Q ss_pred             EEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC--CCCHHHH
Q 028303           57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR--AVSKEEG  134 (210)
Q Consensus        57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~  134 (210)
                      +.|.|.||++-......+-..-.|+.++|++++.+..-...+..+..+....  -..+|++-||+|+..+.  ..+.+++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            8999999999888777776677899999999998655445555555544443  34788999999996432  2345566


Q ss_pred             HHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          135 EQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       135 ~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      ++|.+.   .+.+++++||..+.|++-+++.|.+.+.
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            666664   3678999999999999998888776654

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.45  E-value=3.4e-12  Score=99.70  Aligned_cols=124  Identities=15%  Similarity=0.118  Sum_probs=70.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh-------hHHhh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-------TRSYY   76 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~   76 (210)
                      ..++|+|+|.+|+||||++|+|++........ .+.+.+........+  ..++.+|||||..+....       ...++
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            56899999999999999999999876533211 111222222222334  357899999996543221       11112


Q ss_pred             --ccccEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCC
Q 028303           77 --RGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVS  130 (210)
Q Consensus        77 --~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~  130 (210)
                        ...|+++||..++.......-...+..+....+  .-.++|+++|+.|.......+
T Consensus       115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~  172 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE  172 (313)
T ss_pred             hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence              258999999665432111111122222222221  125789999999975433333

>PTZ00258 GTP-binding protein; Provisional

Probab=99.45  E-value=3.3e-12  Score=103.24  Aligned_cols=86  Identities=21%  Similarity=0.184  Sum_probs=59.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEecCCcch-
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES-   67 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~-   67 (210)
                      ...++|+++|.|++|||||+|+|++........+..+.+.....+.+.+.               ..++.++|+||... 
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            34689999999999999999999887654444444455555555544432               23588999999432 


Q ss_pred             ------hhhhhHHhhccccEEEEEEECC
Q 028303           68 ------FRSITRSYYRGAAGALLVYDIT   89 (210)
Q Consensus        68 ------~~~~~~~~~~~~d~~i~V~d~~   89 (210)
                            ........++.+|++++|+|+.
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                  1112334567899999999973

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.45  E-value=1.3e-12  Score=105.07  Aligned_cols=173  Identities=18%  Similarity=0.168  Sum_probs=116.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCC--CC------------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRF--QP------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI   71 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   71 (210)
                      .-+|+++.+...|||||+..|+.+.-  .+            .-..-.+++.-.+...+..+.++++|+||||+..|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            35799999999999999999986531  11            01112356666665556667789999999999999999


Q ss_pred             hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHHH-------cCC
Q 028303           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAKE-------NGL  143 (210)
Q Consensus        72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~  143 (210)
                      ....+.-+|++++++|+.++.- ...+...   ......+.+.|+|+||+|.+..+. .-..+...++.+       +++
T Consensus        85 VERvl~MVDgvlLlVDA~EGpM-PQTrFVl---kKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPM-PQTRFVL---KKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCC-CchhhhH---HHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            9999999999999999998532 1122222   222234778899999999876443 223444455444       356


Q ss_pred             eEEEEecCCCC------CHHHHHHHHHHHHHHHHhhccccccccC
Q 028303          144 LFLEASARTAQ------NVEEAFIKTAAKILQNIQEGALDAVNDS  182 (210)
Q Consensus       144 ~~~~~sa~~~~------~i~~~~~~l~~~~~~~~~~~~~~~~~~~  182 (210)
                      |++..|++.|.      +-.+-+.-|.+.+++..|.+.-+.+.|-
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~Pl  205 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPL  205 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCe
Confidence            78888988763      2222344555555666666655444444

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.45  E-value=2.8e-12  Score=105.63  Aligned_cols=160  Identities=21%  Similarity=0.294  Sum_probs=121.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+++.|+|+.++|||.|++.++++.+...+..+....+......+.+..-.+.+-|.+-. ....+.... ..+|+++
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~  500 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC  500 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence            46799999999999999999999999988877777777777777777776667778887654 222222222 7899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIK  162 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~  162 (210)
                      ++||.+++.++..+...++.....  .+.|+++|++|+|+.+..+...-+..+++.+++++ -..+|.+.... .++|..
T Consensus       501 ~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~k  577 (625)
T KOG1707|consen  501 LVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIK  577 (625)
T ss_pred             EecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence            999999999999988776665544  48999999999999765544333347889988876 44556664333 788887


Q ss_pred             HHHHHH
Q 028303          163 TAAKIL  168 (210)
Q Consensus       163 l~~~~~  168 (210)
                      |...+.
T Consensus       578 L~~~A~  583 (625)
T KOG1707|consen  578 LATMAQ  583 (625)
T ss_pred             HHHhhh
Confidence            776543

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.44  E-value=2.6e-12  Score=97.13  Aligned_cols=168  Identities=16%  Similarity=0.187  Sum_probs=97.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-------c-----eeEEEEEE-EEE--------------------
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-------I-----GVEFGARM-VTI--------------------   50 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~-----~~~~~~~~-~~~--------------------   50 (210)
                      +..+-|+|+|..|||||||++||.........++-       .     +.+..... +.+                    
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN   96 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN   96 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence            45678999999999999999999765433322210       0     00000000 000                    


Q ss_pred             ---------------CCEEEEEEEEecCCcchhhh------hhHHhh--ccccEEEEEEECCChhh-HHHHHHHHHHHHh
Q 028303           51 ---------------DGRPIKLQIWDTAGQESFRS------ITRSYY--RGAAGALLVYDITRRET-FNHLSSWLEDARQ  106 (210)
Q Consensus        51 ---------------~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~  106 (210)
                                     ....+.+.++|||||-+...      +....+  ...-++++|+|.....+ .-.+.+++.....
T Consensus        97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi  176 (366)
T KOG1532|consen   97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI  176 (366)
T ss_pred             HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence                           01234578999999754332      222222  23457888888654222 1223333333334


Q ss_pred             hcCCCCeEEEEEecCCCCCCCCCC--------HHHHH--------------------HHHHHcCCeEEEEecCCCCCHHH
Q 028303          107 HANPNMSIMLVGNKCDLAHRRAVS--------KEEGE--------------------QFAKENGLLFLEASARTAQNVEE  158 (210)
Q Consensus       107 ~~~~~~p~ivv~nK~D~~~~~~~~--------~~~~~--------------------~~~~~~~~~~~~~sa~~~~~i~~  158 (210)
                      ..+.+.|.|++.||.|+.+.....        .+++.                    +|+.  ++..+-+|+.+|.|+++
T Consensus       177 lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~--~lrtv~VSs~tG~G~dd  254 (366)
T KOG1532|consen  177 LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYR--SLRTVGVSSVTGEGFDD  254 (366)
T ss_pred             HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHh--hCceEEEecccCCcHHH
Confidence            445689999999999986432110        01111                    1111  45688999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 028303          159 AFIKTAAKILQNIQE  173 (210)
Q Consensus       159 ~~~~l~~~~~~~~~~  173 (210)
                      +|..+.+.+-....+
T Consensus       255 f~~av~~~vdEy~~~  269 (366)
T KOG1532|consen  255 FFTAVDESVDEYEEE  269 (366)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999887777655543

>TIGR00101 ureG urease accessory protein UreG

Probab=99.42  E-value=6.8e-12  Score=93.38  Aligned_cols=103  Identities=17%  Similarity=0.129  Sum_probs=65.4

Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG  134 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  134 (210)
                      ....++++.|..........   -+|.+|.|+|+.+..+...  .+...+      ...-++++||+|+.+......+.+
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence            34567788774322222211   2578999999988766322  111122      122389999999975323334444


Q ss_pred             HHHHHH--cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          135 EQFAKE--NGLLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       135 ~~~~~~--~~~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      .+.+..  .+.+++++|+++|+|+.+++++|.+.++
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            444443  4678999999999999999999987643

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.42  E-value=7e-12  Score=103.74  Aligned_cols=164  Identities=17%  Similarity=0.291  Sum_probs=113.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC--CEEEEEEEEecCCcchhhhhhHHhhccc----c
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--GRPIKLQIWDTAGQESFRSITRSYYRGA----A   80 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~----d   80 (210)
                      -.|+|+|..++|||||+.+|.+..   ...++.+.++....+.-+  ....++++|-..|...+..+....+...    -
T Consensus        26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            479999999999999999987643   344455666655543322  1234789999998877777777766543    2


Q ss_pred             EEEEEEECCChhhH-HHHHHHHHHHHhhc---------------------------------------------------
Q 028303           81 GALLVYDITRRETF-NHLSSWLEDARQHA---------------------------------------------------  108 (210)
Q Consensus        81 ~~i~V~d~~~~~s~-~~~~~~~~~~~~~~---------------------------------------------------  108 (210)
                      ++++|+|.+.|..+ +.+..|+..+..+.                                                   
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~  182 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV  182 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence            89999999998664 34444443111000                                                   


Q ss_pred             -----------CCCCeEEEEEecCCCC----CCCCC-------CHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303          109 -----------NPNMSIMLVGNKCDLA----HRRAV-------SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       109 -----------~~~~p~ivv~nK~D~~----~~~~~-------~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                                 ..++|++||++|+|..    .+...       ..+.++.+|..+++.++.+|++...+++-++.+|...
T Consensus       183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~  262 (472)
T PF05783_consen  183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR  262 (472)
T ss_pred             cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence                       0148999999999963    11111       1234677888899999999999999999999998887


Q ss_pred             HHHHHhh
Q 028303          167 ILQNIQE  173 (210)
Q Consensus       167 ~~~~~~~  173 (210)
                      +...-..
T Consensus       263 l~~~~f~  269 (472)
T PF05783_consen  263 LYGFPFK  269 (472)
T ss_pred             hccCCCC
Confidence            7654443

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK13768 GTPase; Provisional

Probab=99.41  E-value=2.5e-12  Score=99.27  Aligned_cols=110  Identities=18%  Similarity=0.182  Sum_probs=69.6

Q ss_pred             EEEEEecCCcchhh---hhhHHhhcc-----ccEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303           56 KLQIWDTAGQESFR---SITRSYYRG-----AAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR  126 (210)
Q Consensus        56 ~~~i~D~~G~~~~~---~~~~~~~~~-----~d~~i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~  126 (210)
                      .+.+||+||+.+..   ..+..+.+.     .+++++|+|+.......+.. .++..+......+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            57899999976543   333333332     88999999997654333322 2222221111247899999999998654


Q ss_pred             CCCCHHHHHH----------------------------HHHHcC--CeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          127 RAVSKEEGEQ----------------------------FAKENG--LLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       127 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      ...  ++...                            .+...+  .+++++|++++.|++++.++|.+.+
T Consensus       178 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        178 EEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             hhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            321  11111                            122223  5789999999999999999987765

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.40  E-value=1e-11  Score=108.96  Aligned_cols=116  Identities=19%  Similarity=0.165  Sum_probs=78.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------C-----CCceeEEEE--EEEEECCEEEEEEEEecCCcc
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------D-----LTIGVEFGA--RMVTIDGRPIKLQIWDTAGQE   66 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~-----~~~~~~~~~--~~~~~~~~~~~~~i~D~~G~~   66 (210)
                      ..-+|+++|+.++|||||+.+|+...-....           .     ...+.....  ..+.+++....+.++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            4458999999999999999999753211000           0     001111111  122334456789999999999


Q ss_pred             hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      .|.......++.+|++++|+|+..+........| ..+...   +.|.|+++||+|..
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc---CCCeEEEEECchhh
Confidence            9988888899999999999999876433322222 222222   56889999999975

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.39  E-value=7.2e-12  Score=86.01  Aligned_cols=114  Identities=29%  Similarity=0.423  Sum_probs=81.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+.+..+.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999998777654433 3322                           222334556778899999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  157 (210)
                      ++.++..++..+  |...+....+.+.|.++++||.|+.++.....++...        ++++|++++.++.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~~--------~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGLE--------FAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHHH--------HHHHhCCCcchhh
Confidence            999999888765  7766665555678899999999985444444433333        4466888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.38  E-value=1.3e-12  Score=100.38  Aligned_cols=96  Identities=22%  Similarity=0.270  Sum_probs=77.0

Q ss_pred             chhhhhhHHhhccccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe
Q 028303           66 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL  144 (210)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  144 (210)
                      +.+..+...+++++|++++|+|+.++. ++..+..|+..+..   .++|+++|+||+|+.+......+.+. .+...+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~-~~~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLD-IYRNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHH-HHHHCCCe
Confidence            566777788999999999999999877 88899998876643   37899999999999654443333343 44457889


Q ss_pred             EEEEecCCCCCHHHHHHHHHH
Q 028303          145 FLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus       145 ~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      ++++||+++.|++++|+.+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.38  E-value=7.9e-12  Score=97.56  Aligned_cols=151  Identities=22%  Similarity=0.212  Sum_probs=106.1

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCC-----------------CC--------------CCCCceeEEEEEEEEE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-----------------PV--------------HDLTIGVEFGARMVTI   50 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------------~~--------------~~~~~~~~~~~~~~~~   50 (210)
                      .....++++-+|...=||||||-||+.+...                 ..              .....+++.......+
T Consensus         2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF   81 (431)
T COG2895           2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF   81 (431)
T ss_pred             CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence            4456789999999999999999999754210                 00              0001255555555556


Q ss_pred             CCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHH--HHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           51 DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS--SWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                      .-.+.+|.+-||||++.|-+....-...+|+.|+++|+..+-. +..+  .++..+..    -..+++.+||+|+.+..+
T Consensus        82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl-~QTrRHs~I~sLLG----IrhvvvAVNKmDLvdy~e  156 (431)
T COG2895          82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL-EQTRRHSFIASLLG----IRHVVVAVNKMDLVDYSE  156 (431)
T ss_pred             ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH-HHhHHHHHHHHHhC----CcEEEEEEeeecccccCH
Confidence            5666789999999999999988888889999999999966432 2222  23333332    246788899999988666


Q ss_pred             CCHHHHH----HHHHHcCC---eEEEEecCCCCCHH
Q 028303          129 VSKEEGE----QFAKENGL---LFLEASARTAQNVE  157 (210)
Q Consensus       129 ~~~~~~~----~~~~~~~~---~~~~~sa~~~~~i~  157 (210)
                      ...+++.    .|+.++++   .++++||..|+|+.
T Consensus       157 ~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         157 EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            5555443    46666654   48999999998864

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.38  E-value=3.6e-12  Score=113.21  Aligned_cols=117  Identities=20%  Similarity=0.160  Sum_probs=80.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCC----------------CCCCCceeEEEEEEEEE--------------CCE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------VHDLTIGVEFGARMVTI--------------DGR   53 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~~   53 (210)
                      +..-+|+|+|+.++|||||+.+|+...-..                +.....+.......+.+              ...
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            455799999999999999999997543110                00001112211222222              123


Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      .+.++++||||+.+|.......++.+|++|+|+|+.++.......-|. .+..   .++|+++++||+|..
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHH---CCCCEEEEEECCccc
Confidence            567899999999999998899999999999999999875433333332 3322   378999999999986

>PTZ00416 elongation factor 2; Provisional

Probab=99.37  E-value=4.8e-12  Score=112.23  Aligned_cols=117  Identities=23%  Similarity=0.219  Sum_probs=79.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCC----------------CCCCCceeEEEEEEEEEC--------CEEEEEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------VHDLTIGVEFGARMVTID--------GRPIKLQI   59 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i   59 (210)
                      +..-+|+++|+.++|||||+++|+...-..                +.....++......+.+.        +....+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            345699999999999999999998632110                000011111112222332        22567899


Q ss_pred             EecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           60 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        60 ~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      +||||+..+.......++.+|++|+|+|+.++...... ..+..+..   .+.|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH---cCCCEEEEEEChhhh
Confidence            99999999988888899999999999999986443332 23333333   268999999999985

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=5.4e-11  Score=92.77  Aligned_cols=172  Identities=19%  Similarity=0.205  Sum_probs=103.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCC----CCCCC---CCCceeEEEEEEEEE-------CCEEEEEEEEecCCcchhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR----FQPVH---DLTIGVEFGARMVTI-------DGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~----~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~   69 (210)
                      ..++++.++|+..+|||||.++|....    |..+.   ....+.+..-..+.+       .+..+++.++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            456999999999999999999997532    22111   112222222222222       3456788999999998777


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC--CCCCHHH-HHHHHHH---c--
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR--RAVSKEE-GEQFAKE---N--  141 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~-~~~~~~~---~--  141 (210)
                      +.......-.|..++|+|+..+-..+.....+-  -...+  ...|+|+||.|...+  +....++ .+...+.   .  
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLii--g~~~c--~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f  160 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLII--GELLC--KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF  160 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhh--hhhhc--cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence            666666677799999999987654444433221  11221  245777888886432  2222222 2222221   1  


Q ss_pred             --CCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhcccccc
Q 028303          142 --GLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAV  179 (210)
Q Consensus       142 --~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~  179 (210)
                        +.|++++|+.+|.--.+.+..|.+.+.++..+...+..
T Consensus       161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~  200 (522)
T KOG0461|consen  161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEE  200 (522)
T ss_pred             CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCC
Confidence              37899999999955555555556666666555544433

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.35  E-value=1.5e-11  Score=98.43  Aligned_cols=156  Identities=12%  Similarity=0.138  Sum_probs=75.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC---CCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhH-----Hhh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD---LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR-----SYY   76 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-----~~~   76 (210)
                      ..++|+|+|.+|+|||||||.|.+-...+...   ....++.....+..+... .+.+||.||-.-......     .-+
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            46899999999999999999997643322111   111222222223333222 478999999543322222     235


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCC-------CCCCCCCH----HHHHHHHHH----c
Q 028303           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL-------AHRRAVSK----EEGEQFAKE----N  141 (210)
Q Consensus        77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~-------~~~~~~~~----~~~~~~~~~----~  141 (210)
                      ...|.+|++.+-.=..  .++ .....+...   +.|+++|-||+|.       ...+..+.    +++++.+.+    .
T Consensus       113 ~~yD~fiii~s~rf~~--ndv-~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~  186 (376)
T PF05049_consen  113 YRYDFFIIISSERFTE--NDV-QLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA  186 (376)
T ss_dssp             GG-SEEEEEESSS--H--HHH-HHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred             cccCEEEEEeCCCCch--hhH-HHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence            5678877766632221  121 122333333   7899999999996       11122222    334443332    2


Q ss_pred             CC---eEEEEecCCC--CCHHHHHHHHHHHH
Q 028303          142 GL---LFLEASARTA--QNVEEAFIKTAAKI  167 (210)
Q Consensus       142 ~~---~~~~~sa~~~--~~i~~~~~~l~~~~  167 (210)
                      ++   ++|.+|..+-  .++..+.+.|.+.+
T Consensus       187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL  217 (376)
T PF05049_consen  187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDL  217 (376)
T ss_dssp             T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred             CCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence            33   4899998874  34556555555443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.35  E-value=5.2e-11  Score=95.37  Aligned_cols=83  Identities=19%  Similarity=0.137  Sum_probs=56.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEE---------------EEEEEEecCCcch----
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP---------------IKLQIWDTAGQES----   67 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~----   67 (210)
                      ++|+++|.|++|||||+|+|++........+..+.+.....+.+.+..               ..+.+.|+||...    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999887433333443444444444444321               2589999999432    


Q ss_pred             hhh---hhHHhhccccEEEEEEECC
Q 028303           68 FRS---ITRSYYRGAAGALLVYDIT   89 (210)
Q Consensus        68 ~~~---~~~~~~~~~d~~i~V~d~~   89 (210)
                      ...   .....++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence            111   2333467899999999984

>cd01882 BMS1 Bms1

Probab=99.34  E-value=5.1e-11  Score=90.49  Aligned_cols=140  Identities=16%  Similarity=0.151  Sum_probs=82.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ....|+++|++|+|||||++.+.+...........+.    ..+ ......++.++||||.-  .. ....++.+|++++
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVll  109 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLL  109 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEEE
Confidence            4567999999999999999999865321111111111    111 12235568899999863  22 2344688999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEecCCCCCCCCC---CHHHHHH-HHHH--cCCeEEEEecCCCCCH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAV---SKEEGEQ-FAKE--NGLLFLEASARTAQNV  156 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~-~~~~--~~~~~~~~sa~~~~~i  156 (210)
                      |+|+..+..... ...+..+..   .+.|.+ +|+||.|+.+....   ..++++. +..+  .+.+++.+||++...+
T Consensus       110 viDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~  184 (225)
T cd01882         110 LIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY  184 (225)
T ss_pred             EEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence            999986543222 223333332   256754 59999998642211   1122222 2211  2467999999987544

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=9.4e-12  Score=105.00  Aligned_cols=165  Identities=19%  Similarity=0.175  Sum_probs=110.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC------------C----EEEEEEEEecCCcchhh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID------------G----RPIKLQIWDTAGQESFR   69 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~i~D~~G~~~~~   69 (210)
                      .+-+||+|+..+|||-|+..+.+.........+.+..+....+...            .    +---+.++||||++.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            3568999999999999999999876655444443333333333221            1    11146799999999999


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC----CCCCH------------HH
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR----RAVSK------------EE  133 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~------------~~  133 (210)
                      .++......||++|+|+|+.++---+.+ .-++.++.   ++.|+||.+||+|..-.    .....            .+
T Consensus       555 nlRsrgsslC~~aIlvvdImhGlepqti-ESi~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E  630 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMHGLEPQTI-ESINLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE  630 (1064)
T ss_pred             hhhhccccccceEEEEeehhccCCcchh-HHHHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence            9999999999999999999875222222 22333333   37999999999996310    00000            01


Q ss_pred             --------HHHHHHH-c-------------CCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhc
Q 028303          134 --------GEQFAKE-N-------------GLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  174 (210)
Q Consensus       134 --------~~~~~~~-~-------------~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~  174 (210)
                              +.+|+.+ +             -+.++++||..|+||.+++.+|+++....+.+.
T Consensus       631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence                    0111111 0             124679999999999999999999888877654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.33  E-value=2.3e-12  Score=98.29  Aligned_cols=109  Identities=20%  Similarity=0.180  Sum_probs=59.8

Q ss_pred             EEEEEecCCcchhhhhhHHhh--------ccccEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303           56 KLQIWDTAGQESFRSITRSYY--------RGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (210)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  126 (210)
                      .+.++|||||.++...+....        ...-++++++|+....+ ...+..++..+......+.|.|.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            578999999998887655544        33458899999874332 222333333332222237999999999999652


Q ss_pred             CCCCHHHH----------------------HHHHH---HcC-C-eEEEEecCCCCCHHHHHHHHHHHH
Q 028303          127 RAVSKEEG----------------------EQFAK---ENG-L-LFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       127 ~~~~~~~~----------------------~~~~~---~~~-~-~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      .   .+..                      ..++.   ..+ + .++++|+.+++++.+++..+-+.+
T Consensus       172 ~---~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 Y---LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             H---HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             h---hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            2   1111                      11111   112 3 699999999999999998876654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.32  E-value=1.2e-10  Score=92.26  Aligned_cols=124  Identities=22%  Similarity=0.284  Sum_probs=85.9

Q ss_pred             ECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhh-------HHHHHHHHHHHHhhcC----CCCeEEEEE
Q 028303           50 IDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET-------FNHLSSWLEDARQHAN----PNMSIMLVG  118 (210)
Q Consensus        50 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s-------~~~~~~~~~~~~~~~~----~~~p~ivv~  118 (210)
                      +.-+...+.++|+|||...+.-|..++.+++++|||+++++.+.       ...+..-+..+.....    .+.++|+++
T Consensus       190 F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFL  269 (354)
T KOG0082|consen  190 FTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFL  269 (354)
T ss_pred             EEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEe
Confidence            33344678899999999999999999999999999999986432       2223333333333222    578999999


Q ss_pred             ecCCCCCC--------------CC-CCHHHHHHHHHH--------c--CCeEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303          119 NKCDLAHR--------------RA-VSKEEGEQFAKE--------N--GLLFLEASARTAQNVEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       119 nK~D~~~~--------------~~-~~~~~~~~~~~~--------~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~  173 (210)
                      ||.|+-++              .. ...+++..+...        .  .+.++.+.|.+-.+|+.+|..+.+.+.....+
T Consensus       270 NK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk  349 (354)
T KOG0082|consen  270 NKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLK  349 (354)
T ss_pred             ecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHH
Confidence            99998322              11 233444443332        1  34466778889999999999999988877654

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.30  E-value=3.4e-11  Score=90.40  Aligned_cols=152  Identities=18%  Similarity=0.187  Sum_probs=84.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC-------CC----CCcee-EEEEEEEEECC--------------------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------HD----LTIGV-EFGARMVTIDG--------------------   52 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-------~~----~~~~~-~~~~~~~~~~~--------------------   52 (210)
                      ....|+|+|+.|+|||||++++........       ..    .+... ......+.+.+                    
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            467899999999999999999975411100       00    00000 00000011100                    


Q ss_pred             EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028303           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE  132 (210)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  132 (210)
                      ....+.++++.|.-. ...  .+....+..+.|+|+.+.+...  .... ..     ...|.++++||+|+.+.......
T Consensus       101 ~~~d~IiIEt~G~l~-~~~--~~~~~~~~~i~Vvd~~~~d~~~--~~~~-~~-----~~~a~iiv~NK~Dl~~~~~~~~~  169 (207)
T TIGR00073       101 DDIDLLFIENVGNLV-CPA--DFDLGEHMRVVLLSVTEGDDKP--LKYP-GM-----FKEADLIVINKADLAEAVGFDVE  169 (207)
T ss_pred             CCCCEEEEecCCCcC-CCc--ccccccCeEEEEEecCcccchh--hhhH-hH-----HhhCCEEEEEHHHccccchhhHH
Confidence            123456667766210 000  1112234556677776543211  1111 11     14578999999999653333334


Q ss_pred             HHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          133 EGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       133 ~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      +..+.+...  ..+++++|++++.|++++++++.++.
T Consensus       170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            454444443  37899999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.29  E-value=6.3e-11  Score=94.18  Aligned_cols=111  Identities=14%  Similarity=0.067  Sum_probs=70.9

Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CH
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SK  131 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~  131 (210)
                      .+.+.|+||+|.......   ....+|.+++|.+...++.+..+.   ..+..     ..-++|+||+|+......  ..
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHH
Confidence            467889999996632222   466799999997754454443332   21221     223899999998653321  12


Q ss_pred             HHHHHHHHH-------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhcc
Q 028303          132 EEGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA  175 (210)
Q Consensus       132 ~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~  175 (210)
                      .+.+..+..       +..+++.+|++++.|++++++.|.+.+....+++.
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~  267 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGE  267 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCCh
Confidence            223333322       23579999999999999999999988765554443

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.29  E-value=8.5e-11  Score=85.18  Aligned_cols=63  Identities=22%  Similarity=0.237  Sum_probs=44.0

Q ss_pred             EEEEEecCCcc----hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecC
Q 028303           56 KLQIWDTAGQE----SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC  121 (210)
Q Consensus        56 ~~~i~D~~G~~----~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  121 (210)
                      .+.|+||||..    .....+..+++.+|++|+|.+++...+......+.......   ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            36899999953    23356778889999999999999866555544444444333   34588999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.29  E-value=9.2e-12  Score=91.86  Aligned_cols=147  Identities=19%  Similarity=0.294  Sum_probs=91.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh-----hhHHhhccc
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----ITRSYYRGA   79 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~   79 (210)
                      .-||+++|.+|+||||+=-.++.+..+. ....+.++++......+-| +..+.+||++|++.+-.     .....++++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            3589999999999999754444332111 2222333444444444444 45789999999985544     344577899


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEecCCCCCCCC--CCHHHH----HHHHHHcCCeEEEEecC
Q 028303           80 AGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRA--VSKEEG----EQFAKENGLLFLEASAR  151 (210)
Q Consensus        80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~--~~~~~~----~~~~~~~~~~~~~~sa~  151 (210)
                      +++|+|||++..+-..++..+...+....  .+...+++.++|.|+.....  ...++.    +.+....++.++++|..
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw  162 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW  162 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence            99999999998877677766665443333  26678888999999964322  111111    12222234556777766


Q ss_pred             CC
Q 028303          152 TA  153 (210)
Q Consensus       152 ~~  153 (210)
                      +.
T Consensus       163 De  164 (295)
T KOG3886|consen  163 DE  164 (295)
T ss_pred             hH
Confidence            53

>cd01900 YchF YchF subfamily

Probab=99.26  E-value=1.1e-10  Score=90.59  Aligned_cols=81  Identities=21%  Similarity=0.150  Sum_probs=55.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEecCCcch----hh
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES----FR   69 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~----~~   69 (210)
                      |+++|.|++|||||+|+|++........+..+.+.....+.+.+.               ...+.++|+||...    ..
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999998764443444454555555555442               12589999999432    11


Q ss_pred             h---hhHHhhccccEEEEEEECC
Q 028303           70 S---ITRSYYRGAAGALLVYDIT   89 (210)
Q Consensus        70 ~---~~~~~~~~~d~~i~V~d~~   89 (210)
                      .   .....++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            2   2233467899999999873

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.25  E-value=3.1e-10  Score=91.26  Aligned_cols=143  Identities=15%  Similarity=0.164  Sum_probs=85.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC----CCC-------------CCCCC---Cce-eEE---EEEEE-EECCEEEEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK----RFQ-------------PVHDL---TIG-VEF---GARMV-TIDGRPIKLQI   59 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~----~~~-------------~~~~~---~~~-~~~---~~~~~-~~~~~~~~~~i   59 (210)
                      -.+.|+|+|+.++|||||+++|.+.    ...             .....   +++ .-+   ....+ ..++....+.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            3588999999999999999999988    222             00111   111 111   11112 22455668889


Q ss_pred             EecCCcchhhh-----------------------------hhHHhhc-cccEEEEEE-ECC--C---hhhHHHHHHHHHH
Q 028303           60 WDTAGQESFRS-----------------------------ITRSYYR-GAAGALLVY-DIT--R---RETFNHLSSWLED  103 (210)
Q Consensus        60 ~D~~G~~~~~~-----------------------------~~~~~~~-~~d~~i~V~-d~~--~---~~s~~~~~~~~~~  103 (210)
                      +||+|...-..                             -....+. .+|..++|. |.+  +   ....+.-..++..
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            99999321111                             1333444 789888888 764  1   1122333455666


Q ss_pred             HHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC
Q 028303          104 ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART  152 (210)
Q Consensus       104 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  152 (210)
                      +...   ++|+++++|+.|....  ...+.+.++..+++++++.+|+..
T Consensus       176 Lk~~---~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~  219 (492)
T TIGR02836       176 LKEL---NKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVES  219 (492)
T ss_pred             HHhc---CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHH
Confidence            6554   7999999999994221  133334455566788878787654

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=8.9e-11  Score=96.98  Aligned_cols=153  Identities=20%  Similarity=0.216  Sum_probs=103.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCC-----------------------------CCCCCCCceeEEEEEEEEECCEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-----------------------------QPVHDLTIGVEFGARMVTIDGRPI   55 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~   55 (210)
                      ..++++|+|+..+|||||+-+|+...-                             ........+.+.......++-...
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            458899999999999999999864310                             011112234555555556666677


Q ss_pred             EEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (210)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  129 (210)
                      .++|.|+||+..|-.....-..++|+.++|+|++...-   |+   ..+.....++...  -..+||++||+|+.+-.+.
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Wsq~  333 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWSQD  333 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCccHH
Confidence            89999999999999988888899999999999986321   11   1233333333332  3467888999998754444


Q ss_pred             CHHHHHH----HHHH-c-----CCeEEEEecCCCCCHHHH
Q 028303          130 SKEEGEQ----FAKE-N-----GLLFLEASARTAQNVEEA  159 (210)
Q Consensus       130 ~~~~~~~----~~~~-~-----~~~~~~~sa~~~~~i~~~  159 (210)
                      ..+++..    |..+ -     .+.|+++|+..|+|+-..
T Consensus       334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            4444443    3311 1     356999999999986544

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=2e-10  Score=99.08  Aligned_cols=119  Identities=18%  Similarity=0.197  Sum_probs=86.5

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCC-----CCC-----------CCCceeEEEEEEEEECCE-EEEEEEEecCCc
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-----PVH-----------DLTIGVEFGARMVTIDGR-PIKLQIWDTAGQ   65 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~   65 (210)
                      .+..-+|.++|+-.+|||||..+++...-.     ...           ....+++........... .+.++++||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            456789999999999999999998643110     011           012244444444444444 588999999999


Q ss_pred             chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      -+|.......++-+|++++|+|+..+-..+.-.-|+... .   .++|.++++||+|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~-~---~~vp~i~fiNKmDR~~  142 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD-K---YGVPRILFVNKMDRLG  142 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh-h---cCCCeEEEEECccccc
Confidence            999999999999999999999999875544444444333 2   3799999999999754

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.24  E-value=1e-10  Score=84.57  Aligned_cols=150  Identities=17%  Similarity=0.105  Sum_probs=90.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEE-------------EEEEE----------------------
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA-------------RMVTI----------------------   50 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~----------------------   50 (210)
                      .+.|.|.|++|||||+|+.+++..-.......-.+.+.+.             ..+.+                      
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            4799999999999999999976542222111111111110             00000                      


Q ss_pred             CCEEEEEEEEecCCcchhhhhhHHhhcccc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303           51 DGRPIKLQIWDTAGQESFRSITRSYYRGAA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (210)
Q Consensus        51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d-~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  129 (210)
                      ......+.|++++|. .   .....+.-.| .-|+|+|++.++....  +-...+.      ..-++|+||.|+...-..
T Consensus        93 ~~~~~Dll~iEs~GN-L---~~~~sp~L~d~~~v~VidvteGe~~P~--K~gP~i~------~aDllVInK~DLa~~v~~  160 (202)
T COG0378          93 DFPDLDLLFIESVGN-L---VCPFSPDLGDHLRVVVIDVTEGEDIPR--KGGPGIF------KADLLVINKTDLAPYVGA  160 (202)
T ss_pred             cCCcCCEEEEecCcc-e---ecccCcchhhceEEEEEECCCCCCCcc--cCCCcee------EeeEEEEehHHhHHHhCc
Confidence            011134566666661 0   0111112234 8899999988753211  0000110      133799999999887777


Q ss_pred             CHHHHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          130 SKEEGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       130 ~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      +.+...+-+++.  +.+++++|.++|+|++++++++....
T Consensus       161 dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         161 DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            777777766653  58899999999999999999987654

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.22  E-value=6.3e-10  Score=83.40  Aligned_cols=153  Identities=23%  Similarity=0.210  Sum_probs=105.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch-------hhhhhHHhhcc
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------FRSITRSYYRG   78 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~   78 (210)
                      ..+|+++|.|.+|||||+..++..........+.+.+..+..+.+++.+  +++.|.||.-+       ..+...+..+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeec
Confidence            4689999999999999999999876655555555777777777888766  67899999321       12244556788


Q ss_pred             ccEEEEEEECCChhhHHH-HHHHHHHHHhhcC------------------------------------------------
Q 028303           79 AAGALLVYDITRRETFNH-LSSWLEDARQHAN------------------------------------------------  109 (210)
Q Consensus        79 ~d~~i~V~d~~~~~s~~~-~~~~~~~~~~~~~------------------------------------------------  109 (210)
                      +|+++.|+|++..+.-.. +...+..+-.+..                                                
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~  219 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF  219 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence            999999999987543222 2222221111100                                                


Q ss_pred             -----------------CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          110 -----------------PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       110 -----------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                                       .-++++.|-||+|     +++.++...++...+  -+.+|+..+.|++.+++.|-+.+
T Consensus       220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l  287 (364)
T KOG1486|consen  220 REDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEEL  287 (364)
T ss_pred             ecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHh
Confidence                             1367777888888     577888888887655  34567788889888887765543

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.21  E-value=7.3e-10  Score=86.59  Aligned_cols=140  Identities=17%  Similarity=0.227  Sum_probs=74.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC----------CCCceeEEEEEEEEECCEEEEEEEEecCCcch-------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------   67 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------   67 (210)
                      ..++|+|+|.+|+|||||+|.|++.......          ..+.........+.-++..+.+.++||||...       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            3689999999999999999999987543332          12333444444455577888999999999321       


Q ss_pred             -----------hhhhhH---------HhhccccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303           68 -----------FRSITR---------SYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (210)
Q Consensus        68 -----------~~~~~~---------~~~~~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  126 (210)
                                 +.....         ..=..+|+++|.++.+... .-.++    ..++.. ...+++|.|+.|+|....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di----~~mk~L-s~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI----EFMKRL-SKRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH----HHHHHH-TTTSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH----HHHHHh-cccccEEeEEecccccCH
Confidence                       011000         0012468999999986521 11222    222222 235899999999997432


Q ss_pred             CCC--CHHHHHHHHHHcCCeEEEEe
Q 028303          127 RAV--SKEEGEQFAKENGLLFLEAS  149 (210)
Q Consensus       127 ~~~--~~~~~~~~~~~~~~~~~~~s  149 (210)
                      .+.  -.+.+.+-+...++.+|...
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S----
T ss_pred             HHHHHHHHHHHHHHHHcCceeeccc
Confidence            111  11233444555677766533

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=2.1e-10  Score=87.71  Aligned_cols=175  Identities=17%  Similarity=0.142  Sum_probs=113.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhC----------CCC----CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDK----------RFQ----PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      .+.++|..+|+..-|||||..+++.-          .+.    .......+++.....+.++-.+..+...|+||+..|-
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv   89 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence            35699999999999999998887531          111    1111234556666555565555667889999999999


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEecCCCCCCCCC---CHHHHHHHHHHcCC--
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAHRRAV---SKEEGEQFAKENGL--  143 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~--  143 (210)
                      .....-..+.|+.|+|++++++.- ...+..+...++.   ++|. ++++||+|+.++.+.   -..+.+++...+++  
T Consensus        90 KNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g  165 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG  165 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence            888888889999999999998532 1222333333333   6755 456899999764332   23456777777764  


Q ss_pred             ---eEEEEecCC-CC---CHHHHHHHHHHHHHHHHhhccccccccC
Q 028303          144 ---LFLEASART-AQ---NVEEAFIKTAAKILQNIQEGALDAVNDS  182 (210)
Q Consensus       144 ---~~~~~sa~~-~~---~i~~~~~~l~~~~~~~~~~~~~~~~~~~  182 (210)
                         |++.-|+.. .+   .-.+-...|++.+-+..+....+.++|.
T Consensus       166 d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dkPf  211 (394)
T COG0050         166 DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDKPF  211 (394)
T ss_pred             CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcccccc
Confidence               466666553 12   2334445566667777776666655554

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=3e-10  Score=91.11  Aligned_cols=118  Identities=19%  Similarity=0.213  Sum_probs=85.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCC--C----------C-CC-------CCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKR--F----------Q-PV-------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~--~----------~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (210)
                      .-..+++-+|.+|||||..+|+--.  .          . ..       ...-.++......+.++.....++|.||||+
T Consensus        12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH   91 (528)
T COG4108          12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH   91 (528)
T ss_pred             hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence            3467899999999999999875210  0          0 00       0112256666666667777788999999999


Q ss_pred             chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                      +.|..-....+..+|..+.|+|+..+-- ....+.+...+.   .++|++-++||.|...+.
T Consensus        92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rd  149 (528)
T COG4108          92 EDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVCRL---RDIPIFTFINKLDREGRD  149 (528)
T ss_pred             cccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHHhh---cCCceEEEeeccccccCC
Confidence            9999999999999999999999987632 223334444333   489999999999976543

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.20  E-value=2.5e-10  Score=90.35  Aligned_cols=104  Identities=15%  Similarity=0.049  Sum_probs=64.4

Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHH
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE  133 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  133 (210)
                      .+.+.|+||+|.....   ......+|.++++.....+   +++..+...+.     +.|.++++||+|+..........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence            4678899999854222   2346678888888554332   33433333332     46789999999986432211000


Q ss_pred             ------HHHHHH---HcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          134 ------GEQFAK---ENGLLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       134 ------~~~~~~---~~~~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                            ...+..   .+..+++++|++++.|+++++++|.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                  011111   12246899999999999999999988744

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>smart00053 DYNc Dynamin, GTPase

Probab=99.20  E-value=3.9e-10  Score=85.86  Aligned_cols=118  Identities=16%  Similarity=0.190  Sum_probs=69.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCce-----e------EEEEEEEE------------------------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-----V------EFGARMVT------------------------   49 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-----~------~~~~~~~~------------------------   49 (210)
                      ....++|+|+.|+||||+++.+.+..+.+......+     .      ......+.                        
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~  104 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT  104 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence            346899999999999999999998753322111110     0      00000010                        


Q ss_pred             --------------ECC-EEEEEEEEecCCcch-------------hhhhhHHhhcc-ccEEEEEEECCChhhHHHHHHH
Q 028303           50 --------------IDG-RPIKLQIWDTAGQES-------------FRSITRSYYRG-AAGALLVYDITRRETFNHLSSW  100 (210)
Q Consensus        50 --------------~~~-~~~~~~i~D~~G~~~-------------~~~~~~~~~~~-~d~~i~V~d~~~~~s~~~~~~~  100 (210)
                                    +.+ ....+.++|+||...             ...+...|+++ .+++++|+|+.....-.....+
T Consensus       105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i  184 (240)
T smart00053      105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL  184 (240)
T ss_pred             CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence                          000 013678999999632             11245567774 4599999998753322222222


Q ss_pred             HHHHHhhcCCCCeEEEEEecCCCCC
Q 028303          101 LEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus       101 ~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      ...+.   ..+.|+++|+||.|..+
T Consensus       185 a~~ld---~~~~rti~ViTK~D~~~  206 (240)
T smart00053      185 AKEVD---PQGERTIGVITKLDLMD  206 (240)
T ss_pred             HHHHH---HcCCcEEEEEECCCCCC
Confidence            22222   23789999999999865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.19  E-value=5e-11  Score=92.19  Aligned_cols=156  Identities=21%  Similarity=0.179  Sum_probs=105.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc---------hhhhhhHHhh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE---------SFRSITRSYY   76 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~   76 (210)
                      ..-|.|+|.++||||||+++|++....+....+-+.+...+....+.++ .+.+.||.|.-         .|+. .....
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~A-TLeeV  255 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQA-TLEEV  255 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHH-HHHHH
Confidence            4578999999999999999999777666655554555555555555544 46688999932         2222 33345


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe----EEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC
Q 028303           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS----IMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART  152 (210)
Q Consensus        77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  152 (210)
                      ..+|+++.|.|+++|.........+..+....-...|    ++=|-||.|.........        .++  .+.+|+++
T Consensus       256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n~--~v~isalt  325 (410)
T KOG0410|consen  256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KNL--DVGISALT  325 (410)
T ss_pred             hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc--------cCC--cccccccc
Confidence            6789999999999997766655555555554322222    345667888654322211        112  56789999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhh
Q 028303          153 AQNVEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       153 ~~~i~~~~~~l~~~~~~~~~~  173 (210)
                      |+|++++...+-..+.+...-
T Consensus       326 gdgl~el~~a~~~kv~~~t~~  346 (410)
T KOG0410|consen  326 GDGLEELLKAEETKVASETTV  346 (410)
T ss_pred             CccHHHHHHHHHHHhhhhhee
Confidence            999999999988887776553

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.15  E-value=2e-09  Score=91.24  Aligned_cols=120  Identities=15%  Similarity=0.183  Sum_probs=72.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEecCCcchhh-------hh---h
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SI---T   72 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~   72 (210)
                      +..++|+|+|.+|+||||++|.|++......... ..+.........+++  ..+.++||||.....       .+   .
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence            3468999999999999999999999864443221 222222222233444  468899999955321       11   1


Q ss_pred             HHhhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCC
Q 028303           73 RSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAH  125 (210)
Q Consensus        73 ~~~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~  125 (210)
                      ..++.  .+|++++|..+........-..++..+....+  .-..+|||+|+.|...
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            12333  47999999987643222122234444443333  1246889999999864

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1.6e-09  Score=87.25  Aligned_cols=155  Identities=17%  Similarity=0.073  Sum_probs=105.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      .|+..|+-.-|||||++.+++....   +.....++.+...  ...+.....+.++|.||++++-......+...|..++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~--~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGF--YYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeee--EeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            5788999999999999999976432   2233333344333  3344444478899999999999888888889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH---cCCeEEEEecCCCCCHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE---NGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      |++++++-..+.. +.+..+....  ....++|+||+|..+... ..+..++....   ...+++.+|+++++||+++-+
T Consensus        80 vV~~deGl~~qtg-EhL~iLdllg--i~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          80 VVAADEGLMAQTG-EHLLILDLLG--IKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EEeCccCcchhhH-HHHHHHHhcC--CCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            9999765332222 2222222221  234589999999876431 11222233222   346789999999999999999


Q ss_pred             HHHHHHH
Q 028303          162 KTAAKIL  168 (210)
Q Consensus       162 ~l~~~~~  168 (210)
                      .|..+..
T Consensus       156 ~l~~L~~  162 (447)
T COG3276         156 ELIDLLE  162 (447)
T ss_pred             HHHHhhh
Confidence            9988875

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=9.7e-10  Score=92.18  Aligned_cols=116  Identities=19%  Similarity=0.253  Sum_probs=84.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----------------CceeEEEEEEEE---ECCEEEEEEEEecC
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----------------TIGVEFGARMVT---IDGRPIKLQIWDTA   63 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~i~D~~   63 (210)
                      +...+|+++|+-.+|||+|+..|..+....-...                 ..++.....++-   ..++.+-+++.|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            4668999999999999999999987654332111                 111111222221   25677789999999


Q ss_pred             CcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCC
Q 028303           64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL  123 (210)
Q Consensus        64 G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  123 (210)
                      |+-.|.......++.+|++++|+|+.++-.+..-+.....+.    ...|+++|+||+|.
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR  261 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence            999999999999999999999999998876554433333332    36899999999996

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=8.2e-10  Score=82.32  Aligned_cols=163  Identities=20%  Similarity=0.273  Sum_probs=98.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh---hhHHhhccccEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---ITRSYYRGAAGAL   83 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~i   83 (210)
                      .+|+++|...|||||+-+.... +..+.......-+.....-.+.+..+.+.+||.||+-.+..   -....++.+-++|
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFh-kMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeee-ccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            5699999999999997655443 33333222211111111122334556899999999865443   3456788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEecCCCCCCC-C-CCHHHHH-----HHHH----HcCCeEEEEec
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRR-A-VSKEEGE-----QFAK----ENGLLFLEASA  150 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~-~-~~~~~~~-----~~~~----~~~~~~~~~sa  150 (210)
                      ||+|+.+. ..+.+...-..+.+..  .+++.+=+++.|.|-..+. . .....+.     ++++    ...+.|+.+|.
T Consensus       107 fvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI  185 (347)
T KOG3887|consen  107 FVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI  185 (347)
T ss_pred             EEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence            99999763 2233333322332222  2678888999999964321 1 1111111     1222    12344777777


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHh
Q 028303          151 RTAQNVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       151 ~~~~~i~~~~~~l~~~~~~~~~  172 (210)
                      .+ ..+-+.|..+++.+.+++|
T Consensus       186 yD-HSIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  186 YD-HSIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             cc-hHHHHHHHHHHHHHhhhch
Confidence            65 7889999999999988877

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.1e-08  Score=81.17  Aligned_cols=84  Identities=21%  Similarity=0.183  Sum_probs=60.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC----------------EEEEEEEEecCCcc---
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG----------------RPIKLQIWDTAGQE---   66 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~---   66 (210)
                      .++++++|.|++|||||+|.++.........|+.+++.......+..                ....+.++|.+|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            36899999999999999999999886545555556666655544421                23468899999832   


Q ss_pred             ----hhhhhhHHhhccccEEEEEEECC
Q 028303           67 ----SFRSITRSYYRGAAGALLVYDIT   89 (210)
Q Consensus        67 ----~~~~~~~~~~~~~d~~i~V~d~~   89 (210)
                          -.......-++.+|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence                22223445578999999999965

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.07  E-value=2.6e-09  Score=87.64  Aligned_cols=114  Identities=18%  Similarity=0.216  Sum_probs=76.2

Q ss_pred             EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhh----------HHHHHHHHHHHHhh-cCCCCeEEEEEecC
Q 028303           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET----------FNHLSSWLEDARQH-ANPNMSIMLVGNKC  121 (210)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s----------~~~~~~~~~~~~~~-~~~~~p~ivv~nK~  121 (210)
                      ....+.++|++|+...+..|..++..++++|||+++++.+.          +.+....+..+... .-.+.|+|+++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            34568899999999999999999999999999999875321          22222333333222 11578999999999


Q ss_pred             CCCC-----CC-------------CCCHHHHHHHHHHc------------CCeEEEEecCCCCCHHHHHHHHHHH
Q 028303          122 DLAH-----RR-------------AVSKEEGEQFAKEN------------GLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       122 D~~~-----~~-------------~~~~~~~~~~~~~~------------~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      |+..     ..             ..+.+.+..++...            .+.++.++|.+-.++..+|+.+.+-
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~  388 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI  388 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence            9621     10             13345555554431            1235688888888898888887654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01855 YqeH YqeH

Probab=99.04  E-value=1.8e-09  Score=79.92  Aligned_cols=111  Identities=21%  Similarity=0.114  Sum_probs=74.1

Q ss_pred             hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcC
Q 028303           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENG  142 (210)
Q Consensus        68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~  142 (210)
                      +...+..+++.+|++++|+|+.++...     |...+... ..+.|+++|+||+|+..... ..+....+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence            567888899999999999999875421     11122111 23679999999999864322 233333333     2233


Q ss_pred             C---eEEEEecCCCCCHHHHHHHHHHHHHHHHhhccccccccCCcccccCCCCCCC
Q 028303          143 L---LFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPS  195 (210)
Q Consensus       143 ~---~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (210)
                      .   .++++||+++.|++++++.|.+.+.          .......+|.++.|+|+
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~----------~~~~~~~~G~~nvGKSt  142 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAK----------KGGDVYVVGATNVGKST  142 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhh----------cCCcEEEEcCCCCCHHH
Confidence            2   5899999999999999999887763          11235566666655554

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=1.9e-09  Score=80.34  Aligned_cols=146  Identities=16%  Similarity=0.216  Sum_probs=86.3

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCC---------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-----
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-----   68 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----   68 (210)
                      .-..++|+|+|.+|.|||||+|.|+......         ....|..+......+.-++..++++++||||..++     
T Consensus        43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n  122 (336)
T KOG1547|consen   43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN  122 (336)
T ss_pred             ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence            3457899999999999999999997653322         23334455555555666778889999999993211     


Q ss_pred             -------------hh--------hhHHhhc--cccEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           69 -------------RS--------ITRSYYR--GAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        69 -------------~~--------~~~~~~~--~~d~~i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                                   ..        .+...++  .+++.+|.+..+- .++..+. .++..+-.    -+.+|-|+.|.|..
T Consensus       123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtl  197 (336)
T KOG1547|consen  123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTL  197 (336)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeecccc
Confidence                         11        1112222  3456666666653 2332222 12222222    35788889999963


Q ss_pred             C--CCCCCHHHHHHHHHHcCCeEEEEecCCC
Q 028303          125 H--RRAVSKEEGEQFAKENGLLFLEASARTA  153 (210)
Q Consensus       125 ~--~~~~~~~~~~~~~~~~~~~~~~~sa~~~  153 (210)
                      .  ++..-.+.+++-+..+++.+++--..+.
T Consensus       198 TleEr~~FkqrI~~el~~~~i~vYPq~~fde  228 (336)
T KOG1547|consen  198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDE  228 (336)
T ss_pred             cHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence            2  2222223455566667888776655543

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.03  E-value=1.5e-09  Score=84.33  Aligned_cols=55  Identities=16%  Similarity=0.143  Sum_probs=40.8

Q ss_pred             CeEEEEEecCCCCCCCCCCHHHHHHHHHH--cCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303          112 MSIMLVGNKCDLAHRRAVSKEEGEQFAKE--NGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       112 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      .+-++|+||+|+........+...+.++.  ..++++++|+++++|+++++++|.++
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            46699999999965333334444444443  35789999999999999999998764

>cd01859 MJ1464 MJ1464

Probab=98.99  E-value=1.7e-09  Score=77.46  Aligned_cols=94  Identities=15%  Similarity=0.106  Sum_probs=63.6

Q ss_pred             hhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 028303           69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEA  148 (210)
Q Consensus        69 ~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (210)
                      ..+.....+++|++++|+|+.++....+. .+...+.   ..+.|+++|+||+|+.+...  ......+....+.+++++
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~i   76 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVYV   76 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEEE
Confidence            45667788889999999999876432221 1112121   13689999999999853211  111112333456789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028303          149 SARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       149 sa~~~~~i~~~~~~l~~~~~  168 (210)
                      |++++.|++++++.|.+.+.
T Consensus        77 Sa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          77 SAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EccccccHHHHHHHHHHHHh
Confidence            99999999999998877664

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.99  E-value=4.7e-09  Score=82.86  Aligned_cols=146  Identities=16%  Similarity=0.251  Sum_probs=87.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh----
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----   70 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----   70 (210)
                      ..++|+++|+.|+|||||+|.|++......          ..++.....+...+.-++..+.++++||||..++-.    
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            468999999999999999999998733222          223444555555555677888999999999321111    


Q ss_pred             ----------hhHHh------------h--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303           71 ----------ITRSY------------Y--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (210)
Q Consensus        71 ----------~~~~~------------~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  126 (210)
                                ....|            +  ..+|+++|.+..+.. .+..+.  +..+... ...+.+|-|+.|+|....
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~D--Ie~Mk~l-s~~vNlIPVI~KaD~lT~  177 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLD--IEAMKRL-SKRVNLIPVIAKADTLTD  177 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHH--HHHHHHH-hcccCeeeeeeccccCCH
Confidence                      01111            1  135788888876642 111111  1112222 235788999999997432


Q ss_pred             CC--CCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303          127 RA--VSKEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus       127 ~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                      .+  .-.+.+.+....+++++|.  ..+.+.-
T Consensus       178 ~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~  207 (373)
T COG5019         178 DELAEFKERIREDLEQYNIPVFD--PYDPEDD  207 (373)
T ss_pred             HHHHHHHHHHHHHHHHhCCceeC--CCCcccc
Confidence            22  2223455666677888875  3454443

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=7.4e-09  Score=82.24  Aligned_cols=144  Identities=17%  Similarity=0.241  Sum_probs=85.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC---------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------   68 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------   68 (210)
                      ..++++++|+.|.|||||+|.|+...+...         ...+.........+.-++..++++++||||..+.       
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            458999999999999999999987754432         1123344444444555778889999999993211       


Q ss_pred             -----------hh-------hhHHhhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           69 -----------RS-------ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        69 -----------~~-------~~~~~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                                 +.       +....+.  .+|+.+|.+..+-. .+..+.  +..+.. ....+.+|-|+.|+|......
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~-l~~~vNiIPVI~KaD~lT~~E  175 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKK-LSKKVNLIPVIAKADTLTKDE  175 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHH-HhccccccceeeccccCCHHH
Confidence                       11       1112222  56788888876542 111111  111111 123678999999999754222


Q ss_pred             --CCHHHHHHHHHHcCCeEEEEecCC
Q 028303          129 --VSKEEGEQFAKENGLLFLEASART  152 (210)
Q Consensus       129 --~~~~~~~~~~~~~~~~~~~~sa~~  152 (210)
                        .-...+.+-+...++++|......
T Consensus       176 l~~~K~~I~~~i~~~nI~vf~fp~~~  201 (366)
T KOG2655|consen  176 LNQFKKRIRQDIEEHNIKVFDFPTDE  201 (366)
T ss_pred             HHHHHHHHHHHHHHcCcceecCCCCc
Confidence              122334555566677766554443

>PRK12289 GTPase RsgA; Reviewed

Probab=98.93  E-value=3e-09  Score=85.50  Aligned_cols=91  Identities=23%  Similarity=0.238  Sum_probs=66.0

Q ss_pred             hhHHhhccccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEe
Q 028303           71 ITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS  149 (210)
Q Consensus        71 ~~~~~~~~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  149 (210)
                      +....+.++|.+++|+|+.++. ....+..|+..+..   .++|+++|+||+|+.....  .+.....+...+++++++|
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~iS  156 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFIS  156 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEEE
Confidence            4445688999999999998865 33455666655432   3789999999999854221  1222334456788899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 028303          150 ARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       150 a~~~~~i~~~~~~l~~~  166 (210)
                      ++++.|++++++.|...
T Consensus       157 A~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        157 VETGIGLEALLEQLRNK  173 (352)
T ss_pred             cCCCCCHHHHhhhhccc
Confidence            99999999999888643

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.91  E-value=7.7e-09  Score=85.19  Aligned_cols=164  Identities=19%  Similarity=0.331  Sum_probs=117.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      +.+|+.++|..++|||+|+++++...+.....+. +-. ...++.+++....+.+.|.+|...     ..+...+|++||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~-~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf  101 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGR-FKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF  101 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCc-Ccc-ceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence            4589999999999999999999988876654443 222 334455777777788889888332     345567999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCC--CCCCCHHHHHHHHHH-cCCeEEEEecCCCCCHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAH--RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~  160 (210)
                      ||.+.+..+++.+..+...+.... ...+|+++++++.-...  .+.+...++++++.. ..+.+|+..+..|.++..+|
T Consensus       102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf  181 (749)
T KOG0705|consen  102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF  181 (749)
T ss_pred             EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence            999999888888877665554332 24688888887765432  223334445544444 45779999999999999999


Q ss_pred             HHHHHHHHHHHhhcc
Q 028303          161 IKTAAKILQNIQEGA  175 (210)
Q Consensus       161 ~~l~~~~~~~~~~~~  175 (210)
                      +.+..++........
T Consensus       182 ~~~~~k~i~~~~~qq  196 (749)
T KOG0705|consen  182 QEVAQKIVQLRKYQQ  196 (749)
T ss_pred             HHHHHHHHHHHhhhh
Confidence            998888877655443

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=1.6e-08  Score=79.08  Aligned_cols=175  Identities=20%  Similarity=0.146  Sum_probs=119.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhC----------CCCC----CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDK----------RFQP----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      .+.++|.-+|+..-|||||-.+++.-          ++.+    ......+++....++.++-....+.-.|+||+.+|-
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI  131 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI  131 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence            35689999999999999998777531          1111    112245677777777776666677788999999999


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC---CCHHHHHHHHHHcC----
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA---VSKEEGEQFAKENG----  142 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~----  142 (210)
                      .....-..+.|+.|+|+.++|+.- ...+..+...++..-  ..+++++||.|+.++.+   .-.-+++++...++    
T Consensus       132 KNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd  208 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD  208 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence            888878889999999999999642 233444444444421  35677799999974332   22345677777765    


Q ss_pred             -CeEEEEecC---CC----CCHHHHHHHHHHHHHHHHhhccccccccC
Q 028303          143 -LLFLEASAR---TA----QNVEEAFIKTAAKILQNIQEGALDAVNDS  182 (210)
Q Consensus       143 -~~~~~~sa~---~~----~~i~~~~~~l~~~~~~~~~~~~~~~~~~~  182 (210)
                       +|++.-||.   .+    .+. +....|++.+-+.++....+.+.+.
T Consensus       209 ~~PvI~GSAL~ALeg~~peig~-~aI~kLldavDsyip~P~R~~~~pF  255 (449)
T KOG0460|consen  209 NTPVIRGSALCALEGRQPEIGL-EAIEKLLDAVDSYIPTPERDLDKPF  255 (449)
T ss_pred             CCCeeecchhhhhcCCCccccH-HHHHHHHHHHhccCCCcccccCCCc
Confidence             467776654   33    233 4466677788888887777777665

>PRK12288 GTPase RsgA; Reviewed

Probab=98.90  E-value=7e-09  Score=83.39  Aligned_cols=87  Identities=17%  Similarity=0.179  Sum_probs=66.3

Q ss_pred             hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHHHcCCeEEEEecCCCC
Q 028303           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAKENGLLFLEASARTAQ  154 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~  154 (210)
                      ..++|.+++|++.....++..+..|+..+..   .++|+++|+||+|+..... ....+....+...+.+++++|++++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4568999999999887888888888765543   3689999999999964321 11223334455678899999999999


Q ss_pred             CHHHHHHHHHH
Q 028303          155 NVEEAFIKTAA  165 (210)
Q Consensus       155 ~i~~~~~~l~~  165 (210)
                      |++++++.|..
T Consensus       195 GideL~~~L~~  205 (347)
T PRK12288        195 GLEELEAALTG  205 (347)
T ss_pred             CHHHHHHHHhh
Confidence            99999988864

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.87  E-value=2e-09  Score=81.67  Aligned_cols=107  Identities=13%  Similarity=0.047  Sum_probs=63.5

Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG  134 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  134 (210)
                      +.+.|++|.|-.....   ....-+|.+++|....-++..+.++.=+.++        .-++|+||.|.+... ....+.
T Consensus       122 ~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNKaD~~gA~-~~~~~l  189 (266)
T PF03308_consen  122 FDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNKADRPGAD-RTVRDL  189 (266)
T ss_dssp             -SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE--SHHHHH-HHHHHH
T ss_pred             CCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeCCChHHHH-HHHHHH
Confidence            5577888876322211   2356789999999987776655544333222        338999999953211 111222


Q ss_pred             HHHHHH-------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303          135 EQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       135 ~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~  173 (210)
                      +.....       +..+++.+||.++.|++++.+.|.++.......
T Consensus       190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~s  235 (266)
T PF03308_consen  190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKES  235 (266)
T ss_dssp             HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            222221       235799999999999999999988766555444

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.84  E-value=4.4e-08  Score=75.56  Aligned_cols=109  Identities=14%  Similarity=0.071  Sum_probs=67.8

Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHH
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE  133 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  133 (210)
                      .+.+.|++|.|-.....   ....-+|.+++|.-..-++..+.++.=+.++        --|+|+||.|..... ....+
T Consensus       143 G~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vINKaD~~~A~-~a~r~  210 (323)
T COG1703         143 GYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVINKADRKGAE-KAARE  210 (323)
T ss_pred             CCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEeccChhhHH-HHHHH
Confidence            45678888877432222   2345688888888776666655555433332        237999999953311 11111


Q ss_pred             ---HHHHHH------HcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhc
Q 028303          134 ---GEQFAK------ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  174 (210)
Q Consensus       134 ---~~~~~~------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~  174 (210)
                         +.++..      .+.-+++.+||..++|++++++.+.++....-..+
T Consensus       211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg  260 (323)
T COG1703         211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG  260 (323)
T ss_pred             HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence               111111      12356999999999999999999888776655544

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.83  E-value=2.4e-08  Score=78.55  Aligned_cols=87  Identities=18%  Similarity=0.128  Sum_probs=66.2

Q ss_pred             HHhhccccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecC
Q 028303           73 RSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR  151 (210)
Q Consensus        73 ~~~~~~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  151 (210)
                      ...+.++|.+++|+|+.++. ++..+..|+..+...   ++|+++|+||+|+.+...  .......+...+.+++++|++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence            34578899999999999887 777777777766543   689999999999965311  112233445567899999999


Q ss_pred             CCCCHHHHHHHHH
Q 028303          152 TAQNVEEAFIKTA  164 (210)
Q Consensus       152 ~~~~i~~~~~~l~  164 (210)
                      ++.|+++++..|.
T Consensus       148 ~g~gi~~L~~~L~  160 (287)
T cd01854         148 TGEGLDELREYLK  160 (287)
T ss_pred             CCccHHHHHhhhc
Confidence            9999999888765

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.82  E-value=1.5e-08  Score=76.51  Aligned_cols=71  Identities=20%  Similarity=0.237  Sum_probs=51.9

Q ss_pred             EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCCh-------hhHHHHHHHHHHHHhhc----CCCCeEEEEEecC
Q 028303           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR-------ETFNHLSSWLEDARQHA----NPNMSIMLVGNKC  121 (210)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~-------~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~  121 (210)
                      ..+.++++|.+|+...+..|..++..+.++|||+..+..       .+-..++..++.+....    -..+.+|+++||.
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            346799999999999999999999999999999988752       12233333333222221    2467899999999


Q ss_pred             CC
Q 028303          122 DL  123 (210)
Q Consensus       122 D~  123 (210)
                      |+
T Consensus       280 Dl  281 (379)
T KOG0099|consen  280 DL  281 (379)
T ss_pred             HH
Confidence            97

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.81  E-value=2.6e-08  Score=80.82  Aligned_cols=112  Identities=24%  Similarity=0.260  Sum_probs=77.6

Q ss_pred             cchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHH----HHHH
Q 028303           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ----FAKE  140 (210)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~  140 (210)
                      .+.|..+...+.+.++++++|+|+.+...     .|...+..... +.|+++|+||+|+.... ...+.+.+    ++..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~-~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG-GNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC-CCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence            56788888888899999999999977542     23333333322 57999999999986432 33344443    4555


Q ss_pred             cCC---eEEEEecCCCCCHHHHHHHHHHHHHHHHhhccccccccCCcccccCCCCCC
Q 028303          141 NGL---LFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGP  194 (210)
Q Consensus       141 ~~~---~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (210)
                      .++   .++++||+++.|++++++.|.+..     +      ......+|.++.|+|
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~-----~------~~~v~~vG~~nvGKS  168 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKAR-----N------KKDVYVVGVTNVGKS  168 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHHh-----C------CCeEEEECCCCCCHH
Confidence            665   489999999999999999986541     1      124667777776654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.80  E-value=1.5e-08  Score=71.40  Aligned_cols=54  Identities=20%  Similarity=0.260  Sum_probs=39.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (210)
                      +++++|.+|+|||||+|+|.+......... .+.+.....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSAT-PGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCC-CCcccceEEEEeCC---CEEEEECCCc
Confidence            799999999999999999998876533222 23344444455554   4679999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.79  E-value=2.7e-08  Score=78.71  Aligned_cols=85  Identities=21%  Similarity=0.182  Sum_probs=63.1

Q ss_pred             hhccccEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCC
Q 028303           75 YYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA  153 (210)
Q Consensus        75 ~~~~~d~~i~V~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  153 (210)
                      .+.++|++++|+|+.++.+... +..|+..+..   .++|+++|+||+|+.+... ...+....+...+.+++++|++++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4689999999999988765444 4556555543   3789999999999953221 122344556667889999999999


Q ss_pred             CCHHHHHHHH
Q 028303          154 QNVEEAFIKT  163 (210)
Q Consensus       154 ~~i~~~~~~l  163 (210)
                      .|++++++.|
T Consensus       153 ~gi~~L~~~l  162 (298)
T PRK00098        153 EGLDELKPLL  162 (298)
T ss_pred             ccHHHHHhhc
Confidence            9999998876

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.79  E-value=3.3e-08  Score=70.75  Aligned_cols=112  Identities=18%  Similarity=0.084  Sum_probs=66.6

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303           80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (210)
Q Consensus        80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  159 (210)
                      |++++|+|+.++.+....  ++.. ......+.|+++|+||+|+...... .+....+.......++.+|++++.+++++
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            789999999887654322  2221 1112236899999999998532110 01111222233556899999999999999


Q ss_pred             HHHHHHHHHHHHhhccccc--cccC-CcccccCCCCCCC
Q 028303          160 FIKTAAKILQNIQEGALDA--VNDS-GIKVGYGRGQGPS  195 (210)
Q Consensus       160 ~~~l~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~  195 (210)
                      ++.+.+.............  .... ...+|-+..|+++
T Consensus        77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKst  115 (155)
T cd01849          77 ESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSS  115 (155)
T ss_pred             HHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHH
Confidence            9998876543332221111  1112 5567777766655

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.77  E-value=3.9e-08  Score=74.23  Aligned_cols=84  Identities=19%  Similarity=0.146  Sum_probs=56.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc-------hhhhhhHHhhccc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-------SFRSITRSYYRGA   79 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~~~~~~~~   79 (210)
                      .+|.++|.|.+||||++..+.+...........+.+.....+.+.+  .++++.|.||.-       -.........+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4899999999999999999998765444333334333333333444  357899999932       1122444567789


Q ss_pred             cEEEEEEECCChh
Q 028303           80 AGALLVYDITRRE   92 (210)
Q Consensus        80 d~~i~V~d~~~~~   92 (210)
                      +++++|+|+..|-
T Consensus       138 nli~~vld~~kp~  150 (358)
T KOG1487|consen  138 NLIFIVLDVLKPL  150 (358)
T ss_pred             cEEEEEeeccCcc
Confidence            9999999986653

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.75  E-value=3e-08  Score=72.07  Aligned_cols=55  Identities=27%  Similarity=0.350  Sum_probs=39.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (210)
                      .++++|+|.||+|||||+|+|.+......... .+.+.....+.++.   .+.++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEEeCC---CEEEEECcC
Confidence            47999999999999999999998765443332 24444444444432   477999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.74  E-value=4.3e-08  Score=70.30  Aligned_cols=56  Identities=21%  Similarity=0.271  Sum_probs=38.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (210)
                      ..++|+++|.+|+|||||+|+|.+.........+ +.+.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~-g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP-GETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC-CeeEeEEEEEcCC---CEEEEECcC
Confidence            3578999999999999999999987654433322 3333333333332   256999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR00092 GTP-binding protein YchF

Probab=98.70  E-value=9.8e-08  Score=76.78  Aligned_cols=83  Identities=20%  Similarity=0.099  Sum_probs=60.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCceeEEEEEEEEECCE---------------EEEEEEEecCCcch---
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES---   67 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~---   67 (210)
                      ++++++|.|++|||||++.|++... .....+..+.......+.+++.               ...+.+.|.||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999999876 4444454455555555555442               23678999999432   


Q ss_pred             ----hhhhhHHhhccccEEEEEEECC
Q 028303           68 ----FRSITRSYYRGAAGALLVYDIT   89 (210)
Q Consensus        68 ----~~~~~~~~~~~~d~~i~V~d~~   89 (210)
                          ........++.+|++++|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2224455678999999999984

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=2.5e-07  Score=73.32  Aligned_cols=122  Identities=16%  Similarity=0.252  Sum_probs=80.1

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc-eeEEEEEEEE------ECCEE---------------------
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-GVEFGARMVT------IDGRP---------------------   54 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~---------------------   54 (210)
                      ++...-|+++|+=..||||||+.|+...++.....+. +++.....+.      ++|..                     
T Consensus        55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln  134 (532)
T KOG1954|consen   55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN  134 (532)
T ss_pred             cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence            4456779999999999999999999998865433321 1111111111      11111                     


Q ss_pred             ------------EEEEEEecCCcc-----------hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCC
Q 028303           55 ------------IKLQIWDTAGQE-----------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN  111 (210)
Q Consensus        55 ------------~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~  111 (210)
                                  -.++++||||.-           .|.....-++..+|.+|++||+..-+--++....+..++.+   .
T Consensus       135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---E  211 (532)
T KOG1954|consen  135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---E  211 (532)
T ss_pred             HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---c
Confidence                        147899999921           33345666788999999999998766555555555555544   3


Q ss_pred             CeEEEEEecCCCCCCC
Q 028303          112 MSIMLVGNKCDLAHRR  127 (210)
Q Consensus       112 ~p~ivv~nK~D~~~~~  127 (210)
                      -.+-||+||.|..+..
T Consensus       212 dkiRVVLNKADqVdtq  227 (532)
T KOG1954|consen  212 DKIRVVLNKADQVDTQ  227 (532)
T ss_pred             ceeEEEeccccccCHH
Confidence            4577889999976533

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=1.6e-08  Score=78.02  Aligned_cols=166  Identities=18%  Similarity=0.202  Sum_probs=104.1

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCC---CCCC--CCCCceeEEEEEE-EE-------------------------
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPV--HDLTIGVEFGARM-VT-------------------------   49 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~--~~~~~~~~~~~~~-~~-------------------------   49 (210)
                      |+.+-+++|.-+|+...||||+++++.+-.   |-.+  ...|...-+.... +.                         
T Consensus        33 isRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c  112 (466)
T KOG0466|consen   33 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPC  112 (466)
T ss_pred             hhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCc
Confidence            355678999999999999999999986531   1110  0011100000000 00                         


Q ss_pred             ----ECCE---EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCC
Q 028303           50 ----IDGR---PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD  122 (210)
Q Consensus        50 ----~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (210)
                          ..++   -..+.+.|+||++.......+-..-.|+.++++..++.-.-....+.+..+....  -..++++-||+|
T Consensus       113 ~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiD  190 (466)
T KOG0466|consen  113 DRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKID  190 (466)
T ss_pred             ccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhh
Confidence                0110   1257899999999877766666666899999988776322222233333332221  247889999999


Q ss_pred             CCCCCCC--CHHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          123 LAHRRAV--SKEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       123 ~~~~~~~--~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      +..+.+.  ..+++..|...   .++|++++||.-..|++-+.++|.+.+.
T Consensus       191 li~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  191 LIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             hhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            9654432  23445556554   3578999999999999999998877654

>cd01856 YlqF YlqF

Probab=98.68  E-value=8.9e-08  Score=69.69  Aligned_cols=121  Identities=13%  Similarity=0.017  Sum_probs=72.3

Q ss_pred             hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 028303           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL  146 (210)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  146 (210)
                      .........+.++|++++|+|+.++....+. .+...+     .+.|+++|+||+|+.+...  .....++.......++
T Consensus         8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi   79 (171)
T cd01856           8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVL   79 (171)
T ss_pred             HHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEE
Confidence            3344556778899999999999876432211 111111     2568999999999853211  1122233334445689


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHhhccc--cccccCCcccccCCCCCCC
Q 028303          147 EASARTAQNVEEAFIKTAAKILQNIQEGAL--DAVNDSGIKVGYGRGQGPS  195 (210)
Q Consensus       147 ~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  195 (210)
                      .+|++++.|++++.+.+...+....+....  .........+|.+..|+++
T Consensus        80 ~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKst  130 (171)
T cd01856          80 FVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKST  130 (171)
T ss_pred             EEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHH
Confidence            999999999999999988776432221111  1111124556666655544

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.67  E-value=7.8e-08  Score=73.32  Aligned_cols=155  Identities=16%  Similarity=0.096  Sum_probs=92.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEecCC----------cchhhhhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSIT   72 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   72 (210)
                      +..+.++++|.+++|||||++.++..+....... ..+.+.....+.+..   .+.+.|.||          .+++....
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHhH
Confidence            3458999999999999999999987765443333 445555555555554   456889999          23444455


Q ss_pred             HHhhcccc---EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC----CCHHHHHH-------HH
Q 028303           73 RSYYRGAA---GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA----VSKEEGEQ-------FA  138 (210)
Q Consensus        73 ~~~~~~~d---~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~-------~~  138 (210)
                      ..|+.+-+   -+++.+|++.+..-.+.. .++.+.+   .++|+.+|+||+|......    -....+..       ..
T Consensus       211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~-~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~  286 (320)
T KOG2486|consen  211 KSYLLERENLVRVFLLVDASVPIQPTDNP-EIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV  286 (320)
T ss_pred             HHHHHhhhhhheeeeeeeccCCCCCCChH-HHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence            55554332   566677776543211111 1112222   3899999999999742111    00011111       11


Q ss_pred             HHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303          139 KENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus       139 ~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      .....+++.+|+.++.|++.++-.+.+
T Consensus       287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  287 FLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             eeccCCceeeecccccCceeeeeehhh
Confidence            122345677999999999888765544

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=1e-07  Score=81.37  Aligned_cols=118  Identities=19%  Similarity=0.205  Sum_probs=84.2

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCC--------------CCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRF--------------QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES   67 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   67 (210)
                      ..+..-+|+++.+...|||||...|....-              ..+...+.+++.....+..-.+.+.+.++|+||+-+
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd   84 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD   84 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence            445677899999999999999999975421              111222334444444444555678899999999999


Q ss_pred             hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCC
Q 028303           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL  123 (210)
Q Consensus        68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  123 (210)
                      |.+......+-+|+.++++|+..+.-.+...-    +++..-.+..+++|+||+|.
T Consensus        85 f~sevssas~l~d~alvlvdvvegv~~qt~~v----lrq~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAV----LRQAWIEGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhhhcCCcEEEEeeccccchhHHHH----HHHHHHccCceEEEEehhhh
Confidence            99999999999999999999988654333222    22222235678899999994

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.67  E-value=1.7e-07  Score=73.38  Aligned_cols=125  Identities=15%  Similarity=0.140  Sum_probs=75.2

Q ss_pred             CCcc-hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc
Q 028303           63 AGQE-SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN  141 (210)
Q Consensus        63 ~G~~-~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  141 (210)
                      ||+- .........+..+|++++|+|+..+.+..+.  ++..+.    .+.|+++|+||+|+.+...  .....+.+...
T Consensus         5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~   76 (276)
T TIGR03596         5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK   76 (276)
T ss_pred             hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence            4442 2334556678899999999999876543221  111111    2579999999999853211  11222233334


Q ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhcccc---ccccCCcccccCCCCCCC
Q 028303          142 GLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD---AVNDSGIKVGYGRGQGPS  195 (210)
Q Consensus       142 ~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  195 (210)
                      +.+++.+|++++.++.++.+.|.+.+..........   ...-....+|.++.|+|+
T Consensus        77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSs  133 (276)
T TIGR03596        77 GIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKST  133 (276)
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHH
Confidence            567899999999999999988877765443221111   111125666777765554

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01858 NGP_1 NGP-1

Probab=98.66  E-value=1e-07  Score=68.34  Aligned_cols=112  Identities=17%  Similarity=0.135  Sum_probs=65.4

Q ss_pred             HhhccccEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecC
Q 028303           74 SYYRGAAGALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR  151 (210)
Q Consensus        74 ~~~~~~d~~i~V~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  151 (210)
                      ..+..+|++++|+|+.++..  ...+..++   .. ...+.|+++|+||+|+...... ......+........+.+|++
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~   78 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYL---KK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN   78 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccCHHHHHHH---Hh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence            34678999999999998643  22222222   22 2335899999999998532210 111222222222335789999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccccccCCcccccCCCCCCC
Q 028303          152 TAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPS  195 (210)
Q Consensus       152 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (210)
                      .+.+++++++.|.+.... ...    ........+|.++.|+|+
T Consensus        79 ~~~~~~~L~~~l~~~~~~-~~~----~~~~~v~~~G~~nvGKSt  117 (157)
T cd01858          79 NPFGKGSLIQLLRQFSKL-HSD----KKQISVGFIGYPNVGKSS  117 (157)
T ss_pred             ccccHHHHHHHHHHHHhh-hcc----ccceEEEEEeCCCCChHH
Confidence            999999999988765331 110    001113356777766654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=9.9e-07  Score=74.79  Aligned_cols=143  Identities=20%  Similarity=0.187  Sum_probs=85.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEE--------------------------------------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR--------------------------------------   46 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------   46 (210)
                      ...||++.|..++||||++|+++..+.-+......+.-+...                                      
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            468999999999999999999987665444333221111100                                      


Q ss_pred             -----EEEECCEE-----EEEEEEecCCc---chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe
Q 028303           47 -----MVTIDGRP-----IKLQIWDTAGQ---ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS  113 (210)
Q Consensus        47 -----~~~~~~~~-----~~~~i~D~~G~---~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p  113 (210)
                           .+.++...     -.+.+.|.||-   .+...-.......+|++|||..+.+.-+.... .++.....   .+..
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---~Kpn  263 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---EKPN  263 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc---cCCc
Confidence                 01111110     14578899994   45556677788899999999999876443332 23333322   2445


Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHcCC--------eEEEEecC
Q 028303          114 IMLVGNKCDLAHRRAVSKEEGEQFAKENGL--------LFLEASAR  151 (210)
Q Consensus       114 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~sa~  151 (210)
                      ++|+.||+|.....+...++++.-..++.+        .+|+||++
T Consensus       264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence            666678889865544444444333223221        37888855

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.66  E-value=3.1e-07  Score=73.13  Aligned_cols=158  Identities=16%  Similarity=0.114  Sum_probs=94.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--------------CceeEEEEEEEEECC------------------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--------------TIGVEFGARMVTIDG------------------   52 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~------------------   52 (210)
                      ..+.+.+.|+.+.|||||+-.|.-.....-.-.              ..+.+.+...+-+++                  
T Consensus       116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v  195 (527)
T COG5258         116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV  195 (527)
T ss_pred             ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence            458899999999999999888865433221111              111122222222221                  


Q ss_pred             ---EEEEEEEEecCCcchhhhh--hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303           53 ---RPIKLQIWDTAGQESFRSI--TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        53 ---~~~~~~i~D~~G~~~~~~~--~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                         .+--+.+.||.|++.|-+.  ....-.+.|..++|+.++++.+.- .+..+-.+...   +.|+|+++||+|+..+.
T Consensus       196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a~---~lPviVvvTK~D~~~dd  271 (527)
T COG5258         196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALAM---ELPVIVVVTKIDMVPDD  271 (527)
T ss_pred             hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhhh---cCCEEEEEEecccCcHH
Confidence               1234789999999988763  444557899999999999875421 12222222222   79999999999985432


Q ss_pred             CC--CHHHHHHHHH----------------------Hc---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          128 AV--SKEEGEQFAK----------------------EN---GLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       128 ~~--~~~~~~~~~~----------------------~~---~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      ..  ..+++....+                      +.   -+|+|.+|+-+++|.+- ++.+..++
T Consensus       272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl-L~e~f~~L  337 (527)
T COG5258         272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL-LDEFFLLL  337 (527)
T ss_pred             HHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH-HHHHHHhC
Confidence            11  1122222111                      11   25799999999999954 33333333

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.64  E-value=1.7e-07  Score=73.32  Aligned_cols=85  Identities=20%  Similarity=0.143  Sum_probs=63.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC---------------EEEEEEEEecCCcc---
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG---------------RPIKLQIWDTAGQE---   66 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~---   66 (210)
                      ..++++++|.|++|||||+|.|++....+...|..+++.....+.+..               ....++++|++|.-   
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            457999999999999999999999988877777777777666555532               23478999999832   


Q ss_pred             -hhhh---hhHHhhccccEEEEEEECC
Q 028303           67 -SFRS---ITRSYYRGAAGALLVYDIT   89 (210)
Q Consensus        67 -~~~~---~~~~~~~~~d~~i~V~d~~   89 (210)
                       .-..   -...-++.+|+++-|+++.
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEec
Confidence             1122   3344568899999999864

>cd01856 YlqF YlqF

Probab=98.62  E-value=1.3e-07  Score=68.87  Aligned_cols=57  Identities=26%  Similarity=0.372  Sum_probs=40.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (210)
                      ..++++++|.+++|||||+++|.+..+.... ...+.+.....+.++   ..+.+|||||-
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            3478999999999999999999987764322 222344444444444   34679999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.61  E-value=7.1e-06  Score=57.94  Aligned_cols=147  Identities=18%  Similarity=0.179  Sum_probs=77.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecC-Cc-----------------
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA-GQ-----------------   65 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~-----------------   65 (210)
                      ...++|++.|+||+||||++.++.+.-....+.-   .-+....+.-+++..-|.+.|+. |.                 
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv---gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY   79 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKV---GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY   79 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCcee---eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence            3468999999999999999999885533222211   12222334456666667777765 31                 


Q ss_pred             ----chhhh----hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH
Q 028303           66 ----ESFRS----ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF  137 (210)
Q Consensus        66 ----~~~~~----~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  137 (210)
                          +.+..    .....++.+|++|  +|---+- ......+...+....+.+.|+|.++.+.+.    ....+    .
T Consensus        80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpM-Elks~~f~~~ve~vl~~~kpliatlHrrsr----~P~v~----~  148 (179)
T COG1618          80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPM-ELKSKKFREAVEEVLKSGKPLIATLHRRSR----HPLVQ----R  148 (179)
T ss_pred             EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccch-hhccHHHHHHHHHHhcCCCcEEEEEecccC----ChHHH----H
Confidence                11111    1223334456544  4532211 111234445555555567898888877653    11112    2


Q ss_pred             HHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          138 AKENGLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       138 ~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      +...+..+++   .+.+|-+.++..++..+
T Consensus       149 ik~~~~v~v~---lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         149 IKKLGGVYVF---LTPENRNRILNEILSVL  175 (179)
T ss_pred             hhhcCCEEEE---EccchhhHHHHHHHHHh
Confidence            2333333333   35555557777766654

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.59  E-value=1.9e-07  Score=73.11  Aligned_cols=57  Identities=28%  Similarity=0.450  Sum_probs=40.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (210)
                      ..++++|+|.+|+|||||+|+|.+......... .+.+.....+.++.   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~-~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNR-PGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeecceEEEEeCC---CEEEEECCCc
Confidence            458899999999999999999998765443322 23444444455543   4679999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.58  E-value=2.9e-06  Score=70.53  Aligned_cols=134  Identities=20%  Similarity=0.327  Sum_probs=84.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------Cc--------------------------------------
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TI--------------------------------------   39 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~--------------------------------------   39 (210)
                      ++..+|+|+|+..+||||.+..+......+-...      +.                                      
T Consensus       306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~  385 (980)
T KOG0447|consen  306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL  385 (980)
T ss_pred             ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence            5678999999999999999998865432221110      00                                      


Q ss_pred             --------eeEEEEE--EEEECCEEE-EEEEEecCC-------------cchhhhhhHHhhccccEEEEEEECCChhhHH
Q 028303           40 --------GVEFGAR--MVTIDGRPI-KLQIWDTAG-------------QESFRSITRSYYRGAAGALLVYDITRRETFN   95 (210)
Q Consensus        40 --------~~~~~~~--~~~~~~~~~-~~~i~D~~G-------------~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~   95 (210)
                              +.+.+..  .+.+.|-.+ +..+.|.||             .+....+...+..+.+++|+++---   |.+
T Consensus       386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVD  462 (980)
T KOG0447|consen  386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVD  462 (980)
T ss_pred             HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---Ccc
Confidence                    1122211  122322222 567899999             2334456778889999999998421   122


Q ss_pred             HHHHHH-HHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028303           96 HLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE  140 (210)
Q Consensus        96 ~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  140 (210)
                      .-+... ..+......+...|+|+||+|+.+....+...++++...
T Consensus       463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             hhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence            222222 223334446788999999999988777777888887764

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.58  E-value=2.7e-07  Score=72.71  Aligned_cols=58  Identities=26%  Similarity=0.391  Sum_probs=41.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (210)
                      ..++++|+|.+|+|||||+|+|.+........ ..+.+.....+.++.   .+.++||||--
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            45899999999999999999999876544322 224444444454443   46799999953

>cd01859 MJ1464 MJ1464

Probab=98.57  E-value=2.5e-07  Score=66.22  Aligned_cols=56  Identities=25%  Similarity=0.341  Sum_probs=38.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (210)
                      ...+++++|.+++|||||+++|.+..... ..++.+.+.....+..+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            35788999999999999999999765332 233334444333333333   578999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=8.7e-08  Score=76.93  Aligned_cols=115  Identities=19%  Similarity=0.215  Sum_probs=89.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC--------CCCCC--------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR--------FQPVH--------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS   70 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (210)
                      -+|.++.+-.+||||...|++.-.        .....        ....+++.....+.++.+..++.++||||+-.|.-
T Consensus        38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l  117 (753)
T KOG0464|consen   38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL  117 (753)
T ss_pred             hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence            478999999999999988875321        11111        11236778888888899999999999999999999


Q ss_pred             hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        71 ~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      ....+++-.|+++.|||.+.+..-+.+.-|++    ..+.++|-+.++||+|...
T Consensus       118 everclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             EHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence            99999999999999999998755455555543    3345899999999999743

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.57  E-value=3.5e-07  Score=72.04  Aligned_cols=126  Identities=14%  Similarity=0.131  Sum_probs=77.1

Q ss_pred             cCCcc-hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028303           62 TAGQE-SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE  140 (210)
Q Consensus        62 ~~G~~-~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  140 (210)
                      .||+- .........+..+|++++|+|+.++.+..+  .++.....    +.|+++|+||+|+.+...  .+...+++..
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            35543 223345667789999999999987654322  11222211    579999999999853211  1222233334


Q ss_pred             cCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhcc-ccccc--cCCcccccCCCCCCC
Q 028303          141 NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA-LDAVN--DSGIKVGYGRGQGPS  195 (210)
Q Consensus       141 ~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~  195 (210)
                      .+.+++.+|++++.+++++.+.+.+.+........ .....  -..+.+|.++.|+|+
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSs  136 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKST  136 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHH
Confidence            45778999999999999999888777654432111 11111  126677888766654

>cd01855 YqeH YqeH

Probab=98.56  E-value=1.5e-07  Score=69.58  Aligned_cols=55  Identities=22%  Similarity=0.310  Sum_probs=38.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCC-------CCCCCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (210)
                      .+++++|.+|+|||||+|+|.+.....       ......+++.....+.++.   .+.++||||
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            579999999999999999999864321       1112224555555555543   467999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.52  E-value=1.3e-06  Score=80.82  Aligned_cols=112  Identities=20%  Similarity=0.253  Sum_probs=68.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCC------CCCceeEEEEEEEEECCEEEEEEEEecCCcc--------hhhhhhHH
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKRFQPVH------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE--------SFRSITRS   74 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~   74 (210)
                      .+|+|++|+||||+++.- +..++-..      ....+.+.. ..+.+.+.-   .++||+|.-        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~~a---vliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTDEA---VLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecCCE---EEEcCCCccccCCCcccccHHHHHH
Confidence            589999999999999886 33332111      111111222 123333333   389999921        12233444


Q ss_pred             hh---------ccccEEEEEEECCChh-----h----HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           75 YY---------RGAAGALLVYDITRRE-----T----FNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        75 ~~---------~~~d~~i~V~d~~~~~-----s----~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      ++         +-.|++|+++|+.+--     .    -..++..+.++....+...|+++++||+|+..
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            33         2368999999987521     1    13455566667777778899999999999853

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.52  E-value=2.5e-07  Score=73.93  Aligned_cols=56  Identities=23%  Similarity=0.402  Sum_probs=44.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (210)
                      .++++|+|.|++|||||||+|.+.........+ |.+.....+.++..   +.++||||-
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P-G~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP-GTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC-ceecceEEEEcCCC---eEEecCCCc
Confidence            478999999999999999999998874444333 77777777777654   679999994

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.51  E-value=3e-06  Score=68.64  Aligned_cols=142  Identities=19%  Similarity=0.278  Sum_probs=77.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------CC----CCceeEEE---EEEEEE-CCEEEEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------HD----LTIGVEFG---ARMVTI-DGRPIKLQIW   60 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~----~~~~~~~~---~~~~~~-~~~~~~~~i~   60 (210)
                      .+-|+|+||..+|||||++||...-.-++                 ..    .|....+.   ...+.+ ++..+++.++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            47799999999999999999965321111                 00    01111111   112333 5677899999


Q ss_pred             ecCCcc-------------------------hhhhh----hHHhhc-ccc-EEEEEEECC--C--hhhHHH-HHHHHHHH
Q 028303           61 DTAGQE-------------------------SFRSI----TRSYYR-GAA-GALLVYDIT--R--RETFNH-LSSWLEDA  104 (210)
Q Consensus        61 D~~G~~-------------------------~~~~~----~~~~~~-~~d-~~i~V~d~~--~--~~s~~~-~~~~~~~~  104 (210)
                      |+.|.-                         .|...    ....++ .+. ++++.-|-+  +  ++.+.. -....+.+
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            998810                         00000    000111 111 444444433  2  222222 22334444


Q ss_pred             HhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC
Q 028303          105 RQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART  152 (210)
Q Consensus       105 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  152 (210)
                      ...   +.|+++++|-.+--.  ....+.+.++..+++++++++++..
T Consensus       177 k~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~  219 (492)
T PF09547_consen  177 KEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQ  219 (492)
T ss_pred             HHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHH
Confidence            444   789999999887422  3334556667777899988888664

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.51  E-value=4.3e-07  Score=63.93  Aligned_cols=78  Identities=17%  Similarity=0.250  Sum_probs=53.0

Q ss_pred             hHHhhccccEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEe
Q 028303           72 TRSYYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS  149 (210)
Q Consensus        72 ~~~~~~~~d~~i~V~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  149 (210)
                      ....+..+|++++|+|+.++.+..  .+..++...    ..+.|+++|+||+|+.++..  ..+..+.+...+..++++|
T Consensus         5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS   78 (141)
T cd01857           5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS   78 (141)
T ss_pred             HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence            345678999999999999876533  233333222    13689999999999854221  2334455656677899999


Q ss_pred             cCCCCC
Q 028303          150 ARTAQN  155 (210)
Q Consensus       150 a~~~~~  155 (210)
                      ++++.+
T Consensus        79 a~~~~~   84 (141)
T cd01857          79 ALKENA   84 (141)
T ss_pred             ecCCCc
Confidence            998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.50  E-value=1.5e-07  Score=67.22  Aligned_cols=59  Identities=24%  Similarity=0.296  Sum_probs=33.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCC------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      .++++|++|+|||||+|.|.+.......      ....-++.....+.++...   .++||||...+.
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~  101 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG  101 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence            5799999999999999999987432211      1111122223334554433   489999975543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.47  E-value=5.3e-06  Score=63.01  Aligned_cols=87  Identities=16%  Similarity=0.085  Sum_probs=54.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCceeEEEEEEEEEC---CEEEEEEEEecCCcchhhh------hh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTID---GRPIKLQIWDTAGQESFRS------IT   72 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~D~~G~~~~~~------~~   72 (210)
                      .+..-|.|+|++++|||+|+|+|++.  .+...... ...+.........   +....+.++||+|......      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~-~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTS-QQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCC-CCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            35677999999999999999999998  55432221 1222222222222   2346789999999543222      22


Q ss_pred             HHhhcc--ccEEEEEEECCCh
Q 028303           73 RSYYRG--AAGALLVYDITRR   91 (210)
Q Consensus        73 ~~~~~~--~d~~i~V~d~~~~   91 (210)
                      ...+..  ++++||..+.+..
T Consensus        84 ~~~l~~llss~~i~n~~~~~~  104 (224)
T cd01851          84 LFALATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHHHHhCEEEEeccCccc
Confidence            333333  8899988887653

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK13796 GTPase YqeH; Provisional

Probab=98.47  E-value=1.5e-06  Score=70.78  Aligned_cols=109  Identities=24%  Similarity=0.305  Sum_probs=68.3

Q ss_pred             hhhhhhHHhhcccc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH----HHHc
Q 028303           67 SFRSITRSYYRGAA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF----AKEN  141 (210)
Q Consensus        67 ~~~~~~~~~~~~~d-~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~  141 (210)
                      .+...... +...+ .+++|+|+.+..     ..|...+..... +.|+++|+||+|+... ....+.+..+    +...
T Consensus        58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence            44444333 34445 999999998743     223333433322 5799999999999642 2333334333    4455


Q ss_pred             CC---eEEEEecCCCCCHHHHHHHHHHHHHHHHhhccccccccCCcccccCCCCCC
Q 028303          142 GL---LFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGP  194 (210)
Q Consensus       142 ~~---~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (210)
                      ++   .++.+||+++.|++++++.|.+..    .       ......+|.++.|+|
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~----~-------~~~v~vvG~~NvGKS  174 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKYR----E-------GRDVYVVGVTNVGKS  174 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHhc----C-------CCeEEEEcCCCCcHH
Confidence            55   589999999999999999986642    1       112555666665554

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=2.7e-06  Score=71.02  Aligned_cols=135  Identities=18%  Similarity=0.173  Sum_probs=80.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      +.+-++|+||||+||||||+.|...-.    ..+...-..+. ..+.++..+++++.+|.  .... .....+-+|++++
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPi-TvvsgK~RRiTflEcp~--Dl~~-miDvaKIaDLVlL  139 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPI-TVVSGKTRRITFLECPS--DLHQ-MIDVAKIADLVLL  139 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCce-EEeecceeEEEEEeChH--HHHH-HHhHHHhhheeEE
Confidence            567888999999999999988874311    00111111111 23567788999999993  3333 2334577999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCCCHHHHHHHHHH-------cCCeEEEEecCC
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVSKEEGEQFAKE-------NGLLFLEASART  152 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~  152 (210)
                      ++|.+-+--.+ ...+++.+..+   +.| ++-|+|+.|+.... -....++.-.+.       .++.+|.+|...
T Consensus       140 lIdgnfGfEME-TmEFLnil~~H---GmPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         140 LIDGNFGFEME-TMEFLNILISH---GMPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             EeccccCceeh-HHHHHHHHhhc---CCCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            99987542222 23444555544   444 45678999986533 223333332221       267777777554

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.42  E-value=2.2e-06  Score=61.52  Aligned_cols=64  Identities=13%  Similarity=0.141  Sum_probs=37.7

Q ss_pred             EEEEEEEecCCcchhhhhhHH--------hhccccEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEecCCC
Q 028303           54 PIKLQIWDTAGQESFRSITRS--------YYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDL  123 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  123 (210)
                      .....++|++|-.+.......        ..-..|.+++++|+.+... ..+...+..++...   +   ++++||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d---~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---D---RILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---C---EEEEecccC
Confidence            346678999996544443322        2234689999999865432 12222333444332   2   678999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.42  E-value=8.3e-07  Score=66.17  Aligned_cols=123  Identities=18%  Similarity=0.203  Sum_probs=81.1

Q ss_pred             CCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhH-------HHH---HHHHHHHHhhc-CCCCeEEEEEe
Q 028303           51 DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-------NHL---SSWLEDARQHA-NPNMSIMLVGN  119 (210)
Q Consensus        51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~-------~~~---~~~~~~~~~~~-~~~~p~ivv~n  119 (210)
                      +-..+.+.+.|.+|+..-...|..++.++..++|++.++..+..       +.+   ...+..+..+. =.+.++|+++|
T Consensus       195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLN  274 (359)
T KOG0085|consen  195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN  274 (359)
T ss_pred             chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEec
Confidence            34455678999999999999999999999888888877653321       111   22233332221 15789999999


Q ss_pred             cCCCCCC----------------CCCCHHHHHHHHHHc----C------CeEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303          120 KCDLAHR----------------RAVSKEEGEQFAKEN----G------LLFLEASARTAQNVEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       120 K~D~~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~  173 (210)
                      |.|+.++                ...+.+.+++|..+.    +      +.-.++-|.+-+||.-+|..+...+++...+
T Consensus       275 KkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~Lk  354 (359)
T KOG0085|consen  275 KKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK  354 (359)
T ss_pred             hhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhhH
Confidence            9998543                223344455655542    1      1123566778899999999988888776543

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.40  E-value=8.6e-07  Score=63.42  Aligned_cols=56  Identities=27%  Similarity=0.358  Sum_probs=36.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (210)
                      ...+++++|.+|+|||||+|.|.+.......... +.+.....+.++   ..+.++||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~-~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP-GTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCC-CcccceEEEEec---CCEEEEECCC
Confidence            4578999999999999999999987643322211 122222223333   2477999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.40  E-value=4.7e-06  Score=66.43  Aligned_cols=143  Identities=22%  Similarity=0.194  Sum_probs=78.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCC--------CC-------------CCceeEEEEEEEEE-------------C
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------HD-------------LTIGVEFGARMVTI-------------D   51 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------~~-------------~~~~~~~~~~~~~~-------------~   51 (210)
                      .-.|+++|++|+||||++..|...-....        ..             ...+..+.......             .
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~  193 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK  193 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence            35789999999999999988854311000        00             00011111100000             1


Q ss_pred             CEEEEEEEEecCCcchhhh--------hhHH----hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 028303           52 GRPIKLQIWDTAGQESFRS--------ITRS----YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN  119 (210)
Q Consensus        52 ~~~~~~~i~D~~G~~~~~~--------~~~~----~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n  119 (210)
                      ...+.+.++||||......        +...    .....+..++|+|++.+..  .+... ......   --+.-+|+|
T Consensus       194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a-~~f~~~---~~~~giIlT  267 (318)
T PRK10416        194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQA-KAFHEA---VGLTGIILT  267 (318)
T ss_pred             hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHH-HHHHhh---CCCCEEEEE
Confidence            2345788999999643222        1111    1234678999999996432  22221 111111   124468899


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303          120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus       120 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      |.|....-    -.+...+...++|+..++  +|++++++-
T Consensus       268 KlD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        268 KLDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            99954322    234555666789988887  777776654

>PRK14974 cell division protein FtsY; Provisional

Probab=98.38  E-value=8.8e-07  Score=70.88  Aligned_cols=95  Identities=14%  Similarity=0.042  Sum_probs=56.0

Q ss_pred             EEEEEEecCCcchhhhh----hHHh--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           55 IKLQIWDTAGQESFRSI----TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                      +.+.++||+|.......    ....  .-..|.+++|+|+..+.........+..   ..   -.--+++||.|....-.
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~---~~---~~~giIlTKlD~~~~~G  296 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNE---AV---GIDGVILTKVDADAKGG  296 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHh---cC---CCCEEEEeeecCCCCcc
Confidence            45889999996533221    1111  1257899999999765432222222221   11   13468899999744322


Q ss_pred             CCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303          129 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                          .+...+...+.|+..++  +|++++++..
T Consensus       297 ----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        297 ----AALSIAYVIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             ----HHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence                23444555688888776  7888877653

>PRK12288 GTPase RsgA; Reviewed

Probab=98.36  E-value=8.1e-07  Score=71.56  Aligned_cols=58  Identities=26%  Similarity=0.354  Sum_probs=36.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc------eeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI------GVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      ++|+|.+|+|||||+|+|.+...........      -++.....+.+++..   .++||||..++.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            6899999999999999999765432211110      122233334454332   389999986654

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.35  E-value=8.5e-06  Score=67.11  Aligned_cols=86  Identities=9%  Similarity=-0.030  Sum_probs=47.6

Q ss_pred             EEEEEEEecCCcchhhhhhH----Hh--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303           54 PIKLQIWDTAGQESFRSITR----SY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~----~~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                      .+.+.|+||+|.........    ..  ...+|-+++|+|++-+....+....+.   ..   -.+.-+|+||.|....-
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~---~~---~~~~g~IlTKlD~~arg  255 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK---DS---VDVGSVIITKLDGHAKG  255 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH---hc---cCCcEEEEECccCCCCc
Confidence            46788999999654332111    11  235688999999986543322222222   11   23567899999964322


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEe
Q 028303          128 AVSKEEGEQFAKENGLLFLEAS  149 (210)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~s  149 (210)
                      .    .+.......+.|+.+++
T Consensus       256 G----~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       256 G----GALSAVAATKSPIIFIG  273 (429)
T ss_pred             c----HHhhhHHHHCCCeEEEc
Confidence            1    12334444566655443

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.31  E-value=1.6e-05  Score=62.09  Aligned_cols=95  Identities=17%  Similarity=0.069  Sum_probs=56.3

Q ss_pred             EEEEEEEecCCcchhhhhhH-------Hhh-----ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecC
Q 028303           54 PIKLQIWDTAGQESFRSITR-------SYY-----RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC  121 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~-------~~~-----~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  121 (210)
                      .+.+.++||||.........       ...     ..+|.+++|+|++....  .+.. ...+....   -+.-+|+||.
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~-~~~f~~~~---~~~g~IlTKl  227 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQ-AKVFNEAV---GLTGIILTKL  227 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHH-HHHHHhhC---CCCEEEEEcc
Confidence            35788999999754333211       111     23889999999985432  2221 22222211   2456889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303          122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      |.....    -.+.......++|+..++  +|++++++.
T Consensus       228 De~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       228 DGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            974432    234455556688888777  677776654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=2.9e-06  Score=67.49  Aligned_cols=151  Identities=21%  Similarity=0.251  Sum_probs=91.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----------------C-------ceeEEEEEEEEE----------C
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----------------T-------IGVEFGARMVTI----------D   51 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~-------~~~~~~~~~~~~----------~   51 (210)
                      ..++++|+|...+|||||+--|+.+....-.-.                |       .+.+.......+          +
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            458999999999999999988875533221110                1       011111111111          1


Q ss_pred             CEEEEEEEEecCCcchhhhhhHHhhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303           52 GRPIKLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (210)
Q Consensus        52 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  129 (210)
                      ...--++++|.+|+..|.......+.  -.|..++|+++..+..+. .+..+..+...   ++|++++++|+|+.....+
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccchhH
Confidence            11124789999999998875555444  357899999998765432 23333444443   7999999999999654221


Q ss_pred             C------------------------HHHHHHHHHH----cCCeEEEEecCCCCCHHHH
Q 028303          130 S------------------------KEEGEQFAKE----NGLLFLEASARTAQNVEEA  159 (210)
Q Consensus       130 ~------------------------~~~~~~~~~~----~~~~~~~~sa~~~~~i~~~  159 (210)
                      .                        .+++...+++    +-+|+|-+|...|++++-+
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence            1                        1122222222    2357999999999998643

>PRK01889 GTPase RsgA; Reviewed

Probab=98.28  E-value=4.5e-06  Score=67.72  Aligned_cols=84  Identities=15%  Similarity=0.166  Sum_probs=57.5

Q ss_pred             hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  155 (210)
                      ..++|.+++|+++..+.....+..++..+...   ++|.++|+||+|+.+......+....+  ..+.+++.+|++++.+
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g  184 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG  184 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence            57889999999997544444555555554443   678899999999964311011112222  3467899999999999


Q ss_pred             HHHHHHHHH
Q 028303          156 VEEAFIKTA  164 (210)
Q Consensus       156 i~~~~~~l~  164 (210)
                      ++++..+|.
T Consensus       185 l~~L~~~L~  193 (356)
T PRK01889        185 LDVLAAWLS  193 (356)
T ss_pred             HHHHHHHhh
Confidence            999888763

>PRK12289 GTPase RsgA; Reviewed

Probab=98.26  E-value=1.7e-06  Score=69.80  Aligned_cols=56  Identities=20%  Similarity=0.238  Sum_probs=35.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc------eeEEEEEEEEECCEEEEEEEEecCCcch
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI------GVEFGARMVTIDGRPIKLQIWDTAGQES   67 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~D~~G~~~   67 (210)
                      ++|+|++|+|||||+|+|.+...........      -++.....+.+++..   .++||||...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~  236 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ  236 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence            7999999999999999999765432211110      022333334454322   4899999854

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.24  E-value=9.1e-06  Score=64.84  Aligned_cols=157  Identities=15%  Similarity=0.123  Sum_probs=87.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCC----------------C--CCCCceeEEEEEE------------------EE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------V--HDLTIGVEFGARM------------------VT   49 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~--~~~~~~~~~~~~~------------------~~   49 (210)
                      .++|+|+|...+|||||+-.|++.....                +  .....+.+.--..                  ..
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            4799999999999999987776542211                1  1111111111000                  00


Q ss_pred             -ECCEEEEEEEEecCCcchhhhh--hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303           50 -IDGRPIKLQIWDTAGQESFRSI--TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (210)
Q Consensus        50 -~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  126 (210)
                       .++..-.++++|.+|++.|-..  ....-+..|.-++++-++.+.- --..+.+-.....   .+|+++|++|+|+...
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLALaL---~VPVfvVVTKIDMCPA  288 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLALAL---HVPVFVVVTKIDMCPA  288 (641)
T ss_pred             eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhhhhh---cCcEEEEEEeeccCcH
Confidence             0112224789999999988763  3334456788888887765421 1112222222222   6899999999998643


Q ss_pred             CCCCH--HHHHHHHH--------------------------HcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          127 RAVSK--EEGEQFAK--------------------------ENGLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       127 ~~~~~--~~~~~~~~--------------------------~~~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      .....  .....+.+                          +.-+++|.+|-.+|.|++ ++..++..+
T Consensus       289 NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~-LLkmFLNll  356 (641)
T KOG0463|consen  289 NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP-LLKMFLNLL  356 (641)
T ss_pred             HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH-HHHHHHhhc
Confidence            22111  11111111                          113578999999999985 344444443

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.23  E-value=8.9e-06  Score=62.35  Aligned_cols=60  Identities=25%  Similarity=0.459  Sum_probs=45.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC----CCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD----LTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (210)
                      ..++|+-+|..|.|||||++.|++..+.....    +..........+.-.+..+++++.||.|
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            46899999999999999999999987754433    3334444444444466778999999998

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.20  E-value=3.5e-06  Score=64.86  Aligned_cols=57  Identities=28%  Similarity=0.381  Sum_probs=35.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------CceeEEEEEEEEECCEEEEEEEEecCCcchh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRPIKLQIWDTAGQESF   68 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   68 (210)
                      .++++|++|+|||||+|+|.+.........      ..-++.....+.+.+.    .++||||...+
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~  184 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEF  184 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCcccc
Confidence            578999999999999999997643221111      0012222233444332    59999997543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.16  E-value=3.7e-06  Score=65.53  Aligned_cols=59  Identities=24%  Similarity=0.271  Sum_probs=36.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQP------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      ..+++|++|+|||||+|+|.......      ......=++.....+.++++..   ++||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence            46899999999999999998642211      1111111233334456653332   89999986544

>PRK13796 GTPase YqeH; Provisional

Probab=98.15  E-value=3.8e-06  Score=68.35  Aligned_cols=57  Identities=21%  Similarity=0.253  Sum_probs=37.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCC----CCCCCceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (210)
                      .++.|+|.+|+|||||+|+|.......    ......+++.....+.+++.   ..++||||-.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            478999999999999999998643111    11122244444455555443   3599999964

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.14  E-value=6.5e-06  Score=66.94  Aligned_cols=125  Identities=14%  Similarity=0.145  Sum_probs=64.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCC----CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhH--------H
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR--------S   74 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~   74 (210)
                      .+++++|.+|+|||||+|+|++.....    ......+++.....+.+++   .+.++||||......+..        .
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~~~~~~~~l~~~~l~~  231 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIINSHQMAHYLDKKDLKY  231 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCChhHhhhhcCHHHHhh
Confidence            479999999999999999999754211    1112223444444444432   245999999654332111        1


Q ss_pred             h--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028303           75 Y--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE  140 (210)
Q Consensus        75 ~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  140 (210)
                      .  -+......+.++....-.+..+. ++..+   ......+.+.+++.+..+..  ..+.+.++..+
T Consensus       232 ~~~~~~i~~~~~~l~~~q~~~~ggl~-~~d~~---~~~~~~~~~~~~~~~~~h~t--~~~~a~~~~~~  293 (360)
T TIGR03597       232 ITPKKEIKPKTYQLNPNQTLFLGGLA-RFDYL---KGEKTSFTFYVSNELNIHRT--KLENADELYNK  293 (360)
T ss_pred             cCCCCccCceEEEeCCCCEEEEceEE-EEEEe---cCCceEEEEEccCCceeEee--chhhhHHHHHh
Confidence            1  12345666666654422221111 01111   11245566667776654432  23445555444

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=7.4e-06  Score=68.82  Aligned_cols=117  Identities=20%  Similarity=0.204  Sum_probs=81.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCC-----CCCCC-----------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKR-----FQPVH-----------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      .-+|.+.-+-.+||||+-.+.+...     ..+..           ....+++.......+...++++.++||||+-.|-
T Consensus        39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT  118 (721)
T KOG0465|consen   39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT  118 (721)
T ss_pred             hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence            3468888889999999988865221     00000           0112444444444455557889999999999998


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  126 (210)
                      -.....++-.|+.++|+++..+-.-+...-|.+ +.++   ++|-|.++||+|....
T Consensus       119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---~vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---NVPRICFINKMDRMGA  171 (721)
T ss_pred             EEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---CCCeEEEEehhhhcCC
Confidence            888899999999999999987644344444443 3333   7999999999997543

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.09  E-value=8e-06  Score=60.14  Aligned_cols=111  Identities=15%  Similarity=0.170  Sum_probs=60.2

Q ss_pred             EEEEEecCCcchhhhh---hHHh---hcc---ccEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           56 KLQIWDTAGQESFRSI---TRSY---YRG---AAGALLVYDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        56 ~~~i~D~~G~~~~~~~---~~~~---~~~---~d~~i~V~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      .+.++|+|||-+....   .+..   +++   --+++|++|..= -++...+...+..+.....-.+|.|=|++|+|+..
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK  178 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence            4679999998655442   1121   222   125666666431 12223333333333333334789999999999854


Q ss_pred             CCCCCHHHHHH-------------------------------HHHHcC-CeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          126 RRAVSKEEGEQ-------------------------------FAKENG-LLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       126 ~~~~~~~~~~~-------------------------------~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      .  .+.++.+.                               +...++ +.+++....+.+++..++..|-..+.
T Consensus       179 ~--~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ  251 (273)
T KOG1534|consen  179 D--KNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ  251 (273)
T ss_pred             h--hhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence            3  11111111                               111122 45778888888888888877665554

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.08  E-value=7.7e-06  Score=64.47  Aligned_cols=60  Identities=20%  Similarity=0.293  Sum_probs=38.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------CceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      -.++++|++|+|||||+|.|.+.........      ...++.....+...+..   .++||||..++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence            4689999999999999999998654322111      11123333334444222   489999987653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=98.05  E-value=6.5e-05  Score=56.42  Aligned_cols=76  Identities=29%  Similarity=0.293  Sum_probs=45.5

Q ss_pred             EEEEEec-CCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCC-CeEEEEEecCCCCCCCCCCHHH
Q 028303           56 KLQIWDT-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCDLAHRRAVSKEE  133 (210)
Q Consensus        56 ~~~i~D~-~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~~~~~~~  133 (210)
                      .+.+.|| +|-+.|.+   ...+.+|.+|.|+|.+-. ++.............   + .++.+|+||+|-.      ...
T Consensus       135 e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~taeri~~L~~el---g~k~i~~V~NKv~e~------e~~  201 (255)
T COG3640         135 EVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRTAERIKELAEEL---GIKRIFVVLNKVDEE------EEL  201 (255)
T ss_pred             cEEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh---CCceEEEEEeeccch------hHH
Confidence            4556676 45555544   556789999999998753 343333322222222   4 6899999999943      233


Q ss_pred             HHHHHHHcCCe
Q 028303          134 GEQFAKENGLL  144 (210)
Q Consensus       134 ~~~~~~~~~~~  144 (210)
                      ....+...+.+
T Consensus       202 ~~~~~~~~~~~  212 (255)
T COG3640         202 LRELAEELGLE  212 (255)
T ss_pred             HHhhhhccCCe
Confidence            44445555544

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=3.7e-05  Score=70.16  Aligned_cols=112  Identities=23%  Similarity=0.269  Sum_probs=63.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC-CCCCC----CCCCceeEEEEEEEEECCEEEEEEEEecCCcc--------hhhhhhHHh
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK-RFQPV----HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE--------SFRSITRSY   75 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~   75 (210)
                      .+|+|++|+||||++..--.. ++.+.    .....+ +.+. ...+.+.   -.++||+|.-        .....|..+
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~c-dwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~f  202 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNC-DWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGF  202 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCC-Cccc-Ccccccc---eEEEcCCcceecccCcchhhHHHHHHH
Confidence            379999999999987543211 11111    111111 1111 1223332   3488998821        222344433


Q ss_pred             ---------hccccEEEEEEECCCh------hh---HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           76 ---------YRGAAGALLVYDITRR------ET---FNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        76 ---------~~~~d~~i~V~d~~~~------~s---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                               .+-.|++|+.+|+.+-      +-   ...++..+.++........|+++++||.|+..
T Consensus       203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                     2346899999998752      11   12244455666666667899999999999854

>PRK00098 GTPase RsgA; Reviewed

Probab=98.02  E-value=1.2e-05  Score=63.73  Aligned_cols=57  Identities=23%  Similarity=0.279  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc------eeEEEEEEEEECCEEEEEEEEecCCcch
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI------GVEFGARMVTIDGRPIKLQIWDTAGQES   67 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~D~~G~~~   67 (210)
                      .++++|++|+|||||+|.|.+...........      -++.....+.+++.   ..++||||...
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            57899999999999999999765432211110      12222333334432   25899999754

>PRK13695 putative NTPase; Provisional

Probab=98.02  E-value=0.00016  Score=52.64  Aligned_cols=23  Identities=39%  Similarity=0.628  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ++|+|+|++|+|||||+..+.+.
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999987543

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.97  E-value=0.00014  Score=59.08  Aligned_cols=139  Identities=15%  Similarity=0.092  Sum_probs=71.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCceeEEE----------------EEEEEE-----------CCEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFG----------------ARMVTI-----------DGRPIK   56 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~----------------~~~~~~-----------~~~~~~   56 (210)
                      -.++|+|++|+||||++.+|...-...   ......+.+.+                .....+           ......
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            467899999999999999987542110   00000001010                000001           012346


Q ss_pred             EEEEecCCcchhhhhhH---Hhhc---cccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCC--CeEEEEEecCCCCCCC
Q 028303           57 LQIWDTAGQESFRSITR---SYYR---GAAGALLVYDITRRE-TFNHLSSWLEDARQHANPN--MSIMLVGNKCDLAHRR  127 (210)
Q Consensus        57 ~~i~D~~G~~~~~~~~~---~~~~---~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~  127 (210)
                      +.++||+|.........   ..+.   ...-.++|++++... ....+...+..........  -+-=+|+||.|-..  
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~--  295 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS--  295 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence            78999999664433211   1122   234568899988643 3333333233222111000  12357789999643  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEe
Q 028303          128 AVSKEEGEQFAKENGLLFLEAS  149 (210)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~s  149 (210)
                        ..=.+..++...+.|+..++
T Consensus       296 --~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        296 --NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             --CccHHHHHHHHHCcCeEEEe
Confidence              23345566677778866664

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.97  E-value=7.2e-05  Score=55.61  Aligned_cols=85  Identities=19%  Similarity=0.047  Sum_probs=48.7

Q ss_pred             EEEEEEecCCcchhhhh----hHHh--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           55 IKLQIWDTAGQESFRSI----TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                      +.+.++||+|.......    ...+  ....+-+++|++++....  .+... .......  + +-=+++||.|...   
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~-~~~~~~~--~-~~~lIlTKlDet~---  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQA-LAFYEAF--G-IDGLILTKLDETA---  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHH-HHHHHHS--S-TCEEEEESTTSSS---
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHH-HHHhhcc--c-CceEEEEeecCCC---
Confidence            45789999996544331    1111  125678999999987543  22221 1222221  1 2246799999633   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEe
Q 028303          129 VSKEEGEQFAKENGLLFLEAS  149 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s  149 (210)
                       ..-.+..++...+.|+-.++
T Consensus       155 -~~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  155 -RLGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             -TTHHHHHHHHHHTSEEEEEE
T ss_pred             -CcccceeHHHHhCCCeEEEE
Confidence             23446677777888876665

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.96  E-value=0.00043  Score=58.50  Aligned_cols=91  Identities=19%  Similarity=0.150  Sum_probs=50.6

Q ss_pred             EEEEEEEecCCcchhhhhhHH---hhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           54 PIKLQIWDTAGQESFRSITRS---YYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~---~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                      .+.+.|+||+|..........   .+.  .....++|++....  ...+...+..+..    ..+.-+|+||.|...   
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~---  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG---  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc---
Confidence            457889999996433321110   011  12356777877642  2233333333322    235679999999632   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303          129 VSKEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                       ..-.+.......+.++..++  +|..+
T Consensus       499 -~lG~aLsv~~~~~LPI~yvt--~GQ~V  523 (559)
T PRK12727        499 -RFGSALSVVVDHQMPITWVT--DGQRV  523 (559)
T ss_pred             -chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence             33456666777788876664  44555

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.95  E-value=1.2e-05  Score=66.41  Aligned_cols=58  Identities=17%  Similarity=0.190  Sum_probs=40.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (210)
                      ..+.|++||.|++||||+||.|.+.+...... |.|.+..-.++.+..   .+.|.|+||.-
T Consensus       313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~-TPGkTKHFQTi~ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSS-TPGKTKHFQTIFLSP---SVCLCDCPGLV  370 (562)
T ss_pred             ceeEEEeecCCCCchhHHHHHHhcCceeeeec-CCCCcceeEEEEcCC---CceecCCCCcc
Confidence            36999999999999999999999987644322 224444434444433   35689999943

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.94  E-value=5.1e-05  Score=62.52  Aligned_cols=138  Identities=19%  Similarity=0.126  Sum_probs=71.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc-----------------------eeEEEEEEEE-------ECCEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-----------------------GVEFGARMVT-------IDGRPIK   56 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~~   56 (210)
                      -.|+|+|++|+||||++..|.+...........                       +.......-.       ..-....
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d  271 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH  271 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence            479999999999999999887531100000000                       0000000000       0011235


Q ss_pred             EEEEecCCcchhhh----hhHHhh--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC
Q 028303           57 LQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS  130 (210)
Q Consensus        57 ~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  130 (210)
                      +.++||+|......    ....+.  ...+-.++|+|++....  .+..++..+...    -+-=+|+||.|-..    .
T Consensus       272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~--~~~~~~~~f~~~----~~~~~I~TKlDEt~----~  341 (420)
T PRK14721        272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD--TLDEVISAYQGH----GIHGCIITKVDEAA----S  341 (420)
T ss_pred             EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH--HHHHHHHHhcCC----CCCEEEEEeeeCCC----C
Confidence            67999999554322    122221  22456789999985321  232322222211    13357899999643    2


Q ss_pred             HHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303          131 KEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                      .=.+..++...++++..++  +|.++
T Consensus       342 ~G~~l~~~~~~~lPi~yvt--~Gq~V  365 (420)
T PRK14721        342 LGIALDAVIRRKLVLHYVT--NGQKV  365 (420)
T ss_pred             ccHHHHHHHHhCCCEEEEE--CCCCc
Confidence            2345566777788866664  45565

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.93  E-value=4.7e-05  Score=55.13  Aligned_cols=135  Identities=22%  Similarity=0.258  Sum_probs=62.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEec-CCc---------------------
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT-AGQ---------------------   65 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~---------------------   65 (210)
                      +|++.|++|+|||||++++...-..... +.  .-+....+.-++...-+.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~-~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGL-PV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCG-GE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCC-cc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            6899999999999999998754311110 11  1111222223333444444444 221                     


Q ss_pred             -chhhh----hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecC-CCCCCCCCCHHHHHHHHH
Q 028303           66 -ESFRS----ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC-DLAHRRAVSKEEGEQFAK  139 (210)
Q Consensus        66 -~~~~~----~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~~  139 (210)
                       +.+..    .....+..+|  ++|+|=--+- ......|...+......+.|+|.++.+. +.        .-...+..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~m-El~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKM-ELKSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STT-CCC-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchh-hhcCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence             11111    1222223445  6777732110 0011234444444444578988888766 32        12344555


Q ss_pred             HcCCeEEEEecCCCCCH
Q 028303          140 ENGLLFLEASARTAQNV  156 (210)
Q Consensus       140 ~~~~~~~~~sa~~~~~i  156 (210)
                      ..++.+++++..+.+.+
T Consensus       147 ~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTSEEEE--TTTCCCH
T ss_pred             CCCcEEEEeChhHHhhH
Confidence            56788999877666554

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.92  E-value=9e-05  Score=53.88  Aligned_cols=83  Identities=16%  Similarity=0.058  Sum_probs=44.7

Q ss_pred             EEEEEEEecCCcchhhh----hhHHhh--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303           54 PIKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                      ...+.++|++|......    ....+.  ...+.+++|+|+......   ..+...+....  + ..-+|+||.|.....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~--~-~~~viltk~D~~~~~  155 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL--G-ITGVILTKLDGDARG  155 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC--C-CCEEEEECCcCCCCc
Confidence            34577899999743221    111111  348999999998754332   22233332222  2 346778999975422


Q ss_pred             CCCHHHHHHHHHHcCCeEE
Q 028303          128 AVSKEEGEQFAKENGLLFL  146 (210)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~  146 (210)
                          -.+...+...++|+.
T Consensus       156 ----g~~~~~~~~~~~p~~  170 (173)
T cd03115         156 ----GAALSIRAVTGKPIK  170 (173)
T ss_pred             ----chhhhhHHHHCcCeE
Confidence                223335555565543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.92  E-value=0.0001  Score=57.61  Aligned_cols=90  Identities=22%  Similarity=0.171  Sum_probs=64.1

Q ss_pred             HhhccccEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC
Q 028303           74 SYYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART  152 (210)
Q Consensus        74 ~~~~~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  152 (210)
                      ...-+.|-.++|+.+.+|+- ...+..++-.+..   .++..++++||+|+.+....-.++....+...+.+++.+|+++
T Consensus        75 p~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~  151 (301)
T COG1162          75 PPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKN  151 (301)
T ss_pred             CcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcC
Confidence            33445778888888888764 3334444333333   3677888999999976554333456678888999999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028303          153 AQNVEEAFIKTAAK  166 (210)
Q Consensus       153 ~~~i~~~~~~l~~~  166 (210)
                      ++++.++.+.+...
T Consensus       152 ~~~~~~l~~~l~~~  165 (301)
T COG1162         152 GDGLEELAELLAGK  165 (301)
T ss_pred             cccHHHHHHHhcCC
Confidence            99999988876544

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.91  E-value=0.00022  Score=56.97  Aligned_cols=85  Identities=11%  Similarity=0.109  Sum_probs=47.8

Q ss_pred             EEEEEEecCCcchhhhhhHHhhc--------cccEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           55 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~V~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      ....++++.|-.....+...+..        ..+.++.|+|+.+.... .+......++...   +   ++++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A---D---~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---D---RILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC---C---EEEEeccccCC
Confidence            45678889997766655544422        24789999999764321 1111122223221   2   78999999865


Q ss_pred             CCCCCHHHHHHHHHHc--CCeEEEEe
Q 028303          126 RRAVSKEEGEQFAKEN--GLLFLEAS  149 (210)
Q Consensus       126 ~~~~~~~~~~~~~~~~--~~~~~~~s  149 (210)
                      ..    +.++......  .++++.++
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVV  186 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEec
Confidence            32    3444444433  45565543

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.00018  Score=54.61  Aligned_cols=161  Identities=20%  Similarity=0.288  Sum_probs=95.4

Q ss_pred             eEEEEEEcCCCC--CHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEE--EEEEEecCCcchhhhhhHHhhccccE
Q 028303            6 LFKYIIIGDTGV--GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPI--KLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         6 ~~~i~v~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      ...++|+|-.|+  ||.+|+.+|....+...........+...  +++.+.+  .+.+.-.+--+++.-.......-..+
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgw--tid~kyysadi~lcishicde~~lpn~~~a~pl~a   81 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGW--TIDNKYYSADINLCISHICDEKFLPNAEIAEPLQA   81 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeece--EecceeeecceeEEeecccchhccCCcccccceee
Confidence            356889999998  99999999988777665555444444333  3444333  12211111111111111112233468


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC---------------------------CC------
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR---------------------------RA------  128 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---------------------------~~------  128 (210)
                      ++.|||.+....+..+..|+..-.... .+ -.+.++||+|....                           ..      
T Consensus        82 ~vmvfdlse~s~l~alqdwl~htdins-fd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg  159 (418)
T KOG4273|consen   82 FVMVFDLSEKSGLDALQDWLPHTDINS-FD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG  159 (418)
T ss_pred             EEEEEeccchhhhHHHHhhcccccccc-ch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence            999999999999999988876432211 11 22455899885311                           00      


Q ss_pred             -----------CCHHHHHHHHHHcCCeEEEEecCCC------------CCHHHHHHHHHHHHHHH
Q 028303          129 -----------VSKEEGEQFAKENGLLFLEASARTA------------QNVEEAFIKTAAKILQN  170 (210)
Q Consensus       129 -----------~~~~~~~~~~~~~~~~~~~~sa~~~------------~~i~~~~~~l~~~~~~~  170 (210)
                                 .....+.+|+.++++.+++.++.+.            .|+..+|..|-..+...
T Consensus       160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpg  224 (418)
T KOG4273|consen  160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPG  224 (418)
T ss_pred             ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcc
Confidence                       0112346688888999999888532            46888888777665543

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.90  E-value=0.00014  Score=51.56  Aligned_cols=58  Identities=16%  Similarity=0.131  Sum_probs=35.7

Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCC
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD  122 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (210)
                      .+.+.|+||+|.....   ..++..+|.+++|...+-.+...-++-  ..+.      .--++++||+|
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~------~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA--GIME------IADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh--hHhh------hcCEEEEeCCC
Confidence            4578899998864222   347788999999988773332222211  2221      12378899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.89  E-value=0.00037  Score=55.69  Aligned_cols=88  Identities=16%  Similarity=0.088  Sum_probs=51.8

Q ss_pred             EEEEEEecCCcchhhhhhHHhhc--------cccEEEEEEECCChhhHHH-HH-HHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           55 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRETFNH-LS-SWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~V~d~~~~~s~~~-~~-~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      ....++++.|-.....+...+..        ..|+++-|+|+.+...... +. ....++..      -=++++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence            45568888886655443333332        3478999999987543222 22 22233322      227999999997


Q ss_pred             CCCCCCHHHHHHHHHHc--CCeEEEEec
Q 028303          125 HRRAVSKEEGEQFAKEN--GLLFLEASA  150 (210)
Q Consensus       125 ~~~~~~~~~~~~~~~~~--~~~~~~~sa  150 (210)
                      +...  .+..+......  .++++.++.
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence            6543  34445555543  466777776

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.87  E-value=0.00017  Score=58.72  Aligned_cols=139  Identities=19%  Similarity=0.132  Sum_probs=72.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCC---------CCC------------CCceeEEEEEEE--E----E---C-CEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP---------VHD------------LTIGVEFGARMV--T----I---D-GRPI   55 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~---------~~~------------~~~~~~~~~~~~--~----~---~-~~~~   55 (210)
                      -.|+|+|++|+||||++..|...-...         ...            ...+..+....-  .    +   . ...+
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~  321 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  321 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence            578999999999999999985321100         000            000111110000  0    0   0 0135


Q ss_pred             EEEEEecCCcchhhhh----hHHhh--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303           56 KLQIWDTAGQESFRSI----TRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (210)
Q Consensus        56 ~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  129 (210)
                      .+.|+||+|.......    ....+  ...+.+++|+|++-..  .++......+...   + .-=+|+||.|-...   
T Consensus       322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~---~-idglI~TKLDET~k---  392 (436)
T PRK11889        322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI---H-IDGIVFTKFDETAS---  392 (436)
T ss_pred             CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC---C-CCEEEEEcccCCCC---
Confidence            7889999996543221    22222  2357789999986432  1223333333221   1 23578999996442   


Q ss_pred             CHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303          130 SKEEGEQFAKENGLLFLEASARTAQNVE  157 (210)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~  157 (210)
                       .=.+..++...++|+..++  +|.++.
T Consensus       393 -~G~iLni~~~~~lPIsyit--~GQ~VP  417 (436)
T PRK11889        393 -SGELLKIPAVSSAPIVLMT--DGQDVK  417 (436)
T ss_pred             -ccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence             2335566667788866554  344443

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.87  E-value=6.8e-05  Score=54.88  Aligned_cols=79  Identities=18%  Similarity=0.154  Sum_probs=41.5

Q ss_pred             EEEEEEecCCcchhhhh--hHH---hhccccEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           55 IKLQIWDTAGQESFRSI--TRS---YYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~--~~~---~~~~~d~~i~V~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                      ....++.+.|-.....+  ...   ..-..+.+|.|+|+.+.....++.. +..++...   +   ++++||+|+.... 
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A---D---vIvlnK~D~~~~~-  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA---D---VIVLNKIDLVSDE-  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----S---EEEEE-GGGHHHH-
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc---C---EEEEeccccCChh-
Confidence            45667888885554444  111   1224579999999977533333333 23333221   2   7899999985533 


Q ss_pred             CCHHHHHHHHHH
Q 028303          129 VSKEEGEQFAKE  140 (210)
Q Consensus       129 ~~~~~~~~~~~~  140 (210)
                      ...+..++..+.
T Consensus       158 ~~i~~~~~~ir~  169 (178)
T PF02492_consen  158 QKIERVREMIRE  169 (178)
T ss_dssp             --HHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            122444444443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.80  E-value=4.9e-05  Score=63.10  Aligned_cols=85  Identities=16%  Similarity=0.046  Sum_probs=47.7

Q ss_pred             EEEEEecCCcchhhhhh------HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303           56 KLQIWDTAGQESFRSIT------RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (210)
Q Consensus        56 ~~~i~D~~G~~~~~~~~------~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  129 (210)
                      .+.|+||+|........      ....-.+|.+++|+|++....   .......+....  + ..-+|+||.|....-  
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~---av~~a~~F~~~l--~-i~gvIlTKlD~~a~~--  248 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ---AKNQAKAFHEAV--G-IGGIIITKLDGTAKG--  248 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH---HHHHHHHHHhcC--C-CCEEEEecccCCCcc--
Confidence            68899999965443211      112346789999999977532   222222222111  1 235788999964322  


Q ss_pred             CHHHHHHHHHHcCCeEEEEec
Q 028303          130 SKEEGEQFAKENGLLFLEASA  150 (210)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~sa  150 (210)
                        =.+.......+.|+.+++.
T Consensus       249 --G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        249 --GGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             --cHHHHHHHHHCcCEEEEec
Confidence              2244455566777665543

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.80  E-value=0.0019  Score=46.40  Aligned_cols=142  Identities=7%  Similarity=0.039  Sum_probs=95.5

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEec-CCcchhhhhhHHhhcccc
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT-AGQESFRSITRSYYRGAA   80 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~~~~~~~~~~~~~~~d   80 (210)
                      ...+...|+++|..+.++..|...+......        ..            +++++--. |=..+    ....-+..|
T Consensus        11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~~--------~~------------l~Vh~a~sLPLp~e----~~~lRprID   66 (176)
T PF11111_consen   11 PELNTATILLVGTEEALLQQLAEAMLEEDKE--------FK------------LKVHLAKSLPLPSE----NNNLRPRID   66 (176)
T ss_pred             CCcceeEEEEecccHHHHHHHHHHHHhhccc--------ee------------EEEEEeccCCCccc----ccCCCceeE
Confidence            4456789999999999999999999953210        11            11111110 00011    111235789


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      .++|++|.+..-++..++.-+..+....=.+ .+.++.+-....+...+...++.+++..+..+++...-...++...+-
T Consensus        67 lIVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lA  145 (176)
T PF11111_consen   67 LIVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLA  145 (176)
T ss_pred             EEEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHH
Confidence            9999999999988888877665553322223 455666667666667788899999999999999999888877766666


Q ss_pred             HHHHHHHH
Q 028303          161 IKTAAKIL  168 (210)
Q Consensus       161 ~~l~~~~~  168 (210)
                      +.|++.+.
T Consensus       146 qRLL~~lq  153 (176)
T PF11111_consen  146 QRLLRMLQ  153 (176)
T ss_pred             HHHHHHHH
Confidence            66555443

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.78  E-value=0.0007  Score=55.08  Aligned_cols=132  Identities=17%  Similarity=0.115  Sum_probs=70.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc---eeEEEEE---------------EEEE------------CCEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI---GVEFGAR---------------MVTI------------DGRPIK   56 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~---------------~~~~------------~~~~~~   56 (210)
                      =.|+++||+|+||||-+-+|...-.........   +++.+..               .+.+            .-..+.
T Consensus       204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d  283 (407)
T COG1419         204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCD  283 (407)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCC
Confidence            458999999999999988876543311111111   1111100               0000            123457


Q ss_pred             EEEEecCCcchhhhh----hHHhhccc--cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC
Q 028303           57 LQIWDTAGQESFRSI----TRSYYRGA--AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS  130 (210)
Q Consensus        57 ~~i~D~~G~~~~~~~----~~~~~~~~--d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  130 (210)
                      +.|+||.|...++..    ...++..+  .-+.+|++++...  .++...+..+...   + .-=+++||.|-..    +
T Consensus       284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~---~-i~~~I~TKlDET~----s  353 (407)
T COG1419         284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLF---P-IDGLIFTKLDETT----S  353 (407)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccC---C-cceeEEEcccccC----c
Confidence            889999997655543    33344333  3667788887542  3455555444332   1 1137789999533    2


Q ss_pred             HHHHHHHHHHcCCeEEEE
Q 028303          131 KEEGEQFAKENGLLFLEA  148 (210)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~  148 (210)
                      .=.........+.|+..+
T Consensus       354 ~G~~~s~~~e~~~PV~Yv  371 (407)
T COG1419         354 LGNLFSLMYETRLPVSYV  371 (407)
T ss_pred             hhHHHHHHHHhCCCeEEE
Confidence            233444555556664444

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=0.00014  Score=60.22  Aligned_cols=131  Identities=23%  Similarity=0.273  Sum_probs=81.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCC------------CCCC--CCCCceeEEEEEEEEE----------------CCEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKR------------FQPV--HDLTIGVEFGARMVTI----------------DGRP   54 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~~--~~~~~~~~~~~~~~~~----------------~~~~   54 (210)
                      +.-++-|+.+...|||||...|....            |...  .....+++.....+..                ++..
T Consensus        18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~   97 (842)
T KOG0469|consen   18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG   97 (842)
T ss_pred             ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence            34567899999999999999986431            1110  0001122222222211                3456


Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC-CCCCCHHH
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-RRAVSKEE  133 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~  133 (210)
                      +.+.++|.||+-.|.+.....++-.|+.++|+|..++.-.+.-.-..+.+..    .+.-+++.||+|..- +-+.+.++
T Consensus        98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~Ee  173 (842)
T KOG0469|consen   98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQEE  173 (842)
T ss_pred             eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHHH
Confidence            7889999999999999999999999999999999876433222222333332    234468899999631 23455555


Q ss_pred             HHHHHH
Q 028303          134 GEQFAK  139 (210)
Q Consensus       134 ~~~~~~  139 (210)
                      ..+.+.
T Consensus       174 Lyqtf~  179 (842)
T KOG0469|consen  174 LYQTFQ  179 (842)
T ss_pred             HHHHHH
Confidence            444333

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.73  E-value=0.00089  Score=48.94  Aligned_cols=86  Identities=16%  Similarity=0.071  Sum_probs=45.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEE--EecC-CcchhhhhhHHhhccccEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQI--WDTA-GQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~D~~-G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      .++++|++|+|||||++.+.+...+..     +.      +.+++..+.+..  .+.+ |+...-.+....+.+.+++++
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~-----G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL   95 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLIPNG-----DN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF   95 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCCCC-----cE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            578999999999999999997643211     11      223332221111  1122 333444456666677766555


Q ss_pred             EE--ECCChhhHHHHHHHHHHH
Q 028303           85 VY--DITRRETFNHLSSWLEDA  104 (210)
Q Consensus        85 V~--d~~~~~s~~~~~~~~~~~  104 (210)
                      ==  ..-|+.+...+..++..+
T Consensus        96 DEPts~LD~~~~~~l~~~l~~~  117 (177)
T cd03222          96 DEPSAYLDIEQRLNAARAIRRL  117 (177)
T ss_pred             ECCcccCCHHHHHHHHHHHHHH
Confidence            21  122344444455555444

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.71  E-value=0.00031  Score=61.87  Aligned_cols=139  Identities=16%  Similarity=0.087  Sum_probs=72.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCC--C-CCceeEEEE----------------EEEEE-----------CCEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH--D-LTIGVEFGA----------------RMVTI-----------DGRPIKL   57 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~--~-~~~~~~~~~----------------~~~~~-----------~~~~~~~   57 (210)
                      -|+|+|++|+||||.+..|...-.....  . .-.+.+.+.                .....           .-....+
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~  266 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL  266 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence            5799999999999999998754211100  0 000000000                00000           0123467


Q ss_pred             EEEecCCcchhhh----hhHHh--hccccEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC
Q 028303           58 QIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRR-ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS  130 (210)
Q Consensus        58 ~i~D~~G~~~~~~----~~~~~--~~~~d~~i~V~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  130 (210)
                      .|+||+|......    .....  ....+-+++|+|++.. ..+.++...|.....   . -+-=+|+||.|-...    
T Consensus       267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~---~-~i~glIlTKLDEt~~----  338 (767)
T PRK14723        267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAG---E-DVDGCIITKLDEATH----  338 (767)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhccc---C-CCCEEEEeccCCCCC----
Confidence            8999999433222    11111  2245678999998753 333333333322110   0 133578999996432    


Q ss_pred             HHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303          131 KEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                      .=.+..+....++|+..++  +|++|
T Consensus       339 ~G~iL~i~~~~~lPI~yit--~GQ~V  362 (767)
T PRK14723        339 LGPALDTVIRHRLPVHYVS--TGQKV  362 (767)
T ss_pred             ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence            2335556667788876664  45666

>TIGR00959 ffh signal recognition particle protein

Probab=97.70  E-value=0.00031  Score=58.24  Aligned_cols=87  Identities=16%  Similarity=0.033  Sum_probs=49.1

Q ss_pred             EEEEEEEecCCcchhhhh----hHH--hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303           54 PIKLQIWDTAGQESFRSI----TRS--YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                      .+.+.|+||+|.......    ...  ..-..|.+++|+|+..+..   ...+...+....  + ..-+|+||.|-....
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~---~~~~a~~f~~~v--~-i~giIlTKlD~~~~~  255 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQD---AVNTAKTFNERL--G-LTGVVLTKLDGDARG  255 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHH---HHHHHHHHHhhC--C-CCEEEEeCccCcccc
Confidence            356889999995433221    111  1235788999999876532   223333332221  1 235779999953322


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEec
Q 028303          128 AVSKEEGEQFAKENGLLFLEASA  150 (210)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~sa  150 (210)
                          -.+.......++|+.++..
T Consensus       256 ----G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       256 ----GAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ----cHHHHHHHHHCcCEEEEeC
Confidence                2255666667788666554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.70  E-value=0.00036  Score=57.93  Aligned_cols=87  Identities=15%  Similarity=0.041  Sum_probs=47.7

Q ss_pred             EEEEEEEecCCcchhhh----hhHHh--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303           54 PIKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                      .+.+.|+||+|......    .....  .-..+.+++|+|+..+..   .......+....  + ..-+|+||.|-....
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~---av~~a~~F~~~~--~-i~giIlTKlD~~~rg  256 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQD---AVNTAKAFNEAL--G-LTGVILTKLDGDARG  256 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHH---HHHHHHHHHhhC--C-CCEEEEeCccCcccc
Confidence            35688999999543222    11111  125678899999876533   222222222211  1 235778999963322


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEec
Q 028303          128 AVSKEEGEQFAKENGLLFLEASA  150 (210)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~sa  150 (210)
                      .    .+.......++|+.++..
T Consensus       257 G----~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        257 G----AALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             c----HHHHHHHHHCcCEEEEeC
Confidence            1    255566666777666554

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.69  E-value=5.8e-05  Score=60.77  Aligned_cols=153  Identities=21%  Similarity=0.147  Sum_probs=90.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCC-------------------C------------CCCCCCCceeEEEEEEEEECCE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKR-------------------F------------QPVHDLTIGVEFGARMVTIDGR   53 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~-------------------~------------~~~~~~~~~~~~~~~~~~~~~~   53 (210)
                      ..++++++|+..+||||+-..+....                   .            .++....-+.......+  .-.
T Consensus        78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F--Ete  155 (501)
T KOG0459|consen   78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF--ETE  155 (501)
T ss_pred             CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE--Eec
Confidence            45899999999999999865553210                   0            00111111222222222  222


Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhh---HHH---HHHHHHHHHhhcCCCCeEEEEEecCCCCCC-
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FNH---LSSWLEDARQHANPNMSIMLVGNKCDLAHR-  126 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s---~~~---~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-  126 (210)
                      ..++.+.|.||+..|-.....-..++|..++|+++...+-   |+.   .+.........  .-...|+++||+|-+.. 
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~--gv~~lVv~vNKMddPtvn  233 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA--GVKHLIVLINKMDDPTVN  233 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh--ccceEEEEEEeccCCccC
Confidence            3468899999999998887788889999999999864321   111   11111111111  13577899999996431 


Q ss_pred             -CCCCHHH----HHHHHHHc------CCeEEEEecCCCCCHHHHHH
Q 028303          127 -RAVSKEE----GEQFAKEN------GLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus       127 -~~~~~~~----~~~~~~~~------~~~~~~~sa~~~~~i~~~~~  161 (210)
                       .....++    ...+....      ...++++|..+|.++.+..+
T Consensus       234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence             1111222    22333322      24589999999999887653

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.67  E-value=0.00048  Score=57.81  Aligned_cols=102  Identities=18%  Similarity=0.083  Sum_probs=54.7

Q ss_pred             EEEEEecCCcchhhh---hhHHhhcc---ccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           56 KLQIWDTAGQESFRS---ITRSYYRG---AAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        56 ~~~i~D~~G~~~~~~---~~~~~~~~---~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                      .+.++||+|......   .....+..   ..-.++|+|++... .+..+...+..       ....-+|+||.|-..   
T Consensus       336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~-------~~~~g~IlTKlDet~---  405 (484)
T PRK06995        336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRG-------PGLAGCILTKLDEAA---  405 (484)
T ss_pred             CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhcc-------CCCCEEEEeCCCCcc---
Confidence            567999999443322   11111221   23478899987532 22222222211       123457789999532   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEecCCCCCH-HHHH----HHHHHHHHHH
Q 028303          129 VSKEEGEQFAKENGLLFLEASARTAQNV-EEAF----IKTAAKILQN  170 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i-~~~~----~~l~~~~~~~  170 (210)
                       ..-.+..+....++++..++  +|+++ +++.    +.|++.++..
T Consensus       406 -~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~~  449 (484)
T PRK06995        406 -SLGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFCA  449 (484)
T ss_pred             -cchHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhcC
Confidence             33446667777788876664  45666 4433    3455555554

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.64  E-value=0.00034  Score=57.53  Aligned_cols=133  Identities=22%  Similarity=0.166  Sum_probs=68.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC-CCC---------CC--C----------CCceeEEEEEE-E-----EECCEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR-FQP---------VH--D----------LTIGVEFGARM-V-----TIDGRPIKLQ   58 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~-~~~---------~~--~----------~~~~~~~~~~~-~-----~~~~~~~~~~   58 (210)
                      .-++|+|++|+||||++.+|.... ...         ..  .          ...+....... .     .+....+.+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999999886421 000         00  0          00011111000 0     0011245678


Q ss_pred             EEecCCcchhhh----hhHHhhc-----cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303           59 IWDTAGQESFRS----ITRSYYR-----GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (210)
Q Consensus        59 i~D~~G~~~~~~----~~~~~~~-----~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  129 (210)
                      ++||+|......    .+..+++     ...-.++|+|++-...  .+..........    -+-=+|+||.|-...   
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~--~~~~~~~~f~~~----~~~glIlTKLDEt~~---  374 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH--HTLTVLKAYESL----NYRRILLTKLDEADF---  374 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH--HHHHHHHHhcCC----CCCEEEEEcccCCCC---
Confidence            999999653222    1122221     2346889999886532  222222222111    133588999996432   


Q ss_pred             CHHHHHHHHHHcCCeEEEEe
Q 028303          130 SKEEGEQFAKENGLLFLEAS  149 (210)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~s  149 (210)
                       .=.+...+...+.|+..++
T Consensus       375 -~G~il~i~~~~~lPI~ylt  393 (432)
T PRK12724        375 -LGSFLELADTYSKSFTYLS  393 (432)
T ss_pred             -ccHHHHHHHHHCCCEEEEe
Confidence             2235556666777865554

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.62  E-value=0.00064  Score=44.94  Aligned_cols=82  Identities=18%  Similarity=0.179  Sum_probs=48.6

Q ss_pred             EEEEc-CCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            9 YIIIG-DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         9 i~v~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      |.+.| ..|+||||+...+...-.. ...+..-       +..+. .+.+.++|+|+.....  ....+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~-------~d~d~-~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLL-------IDLDP-QYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEE-------EeCCC-CCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56666 6799999987666432211 1111111       11121 1678899999865332  3367788999999998


Q ss_pred             CCChhhHHHHHHHHH
Q 028303           88 ITRRETFNHLSSWLE  102 (210)
Q Consensus        88 ~~~~~s~~~~~~~~~  102 (210)
                      .+. .+...+..+++
T Consensus        71 ~~~-~s~~~~~~~~~   84 (104)
T cd02042          71 PSP-LDLDGLEKLLE   84 (104)
T ss_pred             CCH-HHHHHHHHHHH
Confidence            864 44555555444

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.60  E-value=0.00033  Score=49.08  Aligned_cols=106  Identities=11%  Similarity=0.149  Sum_probs=60.4

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECC
Q 028303           10 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT   89 (210)
Q Consensus        10 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~   89 (210)
                      +.-|.+|+|||++.-.+...-. .......-.+..   .......+.+.++|+|+..  .......+..+|.+++|.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            4567899999998666542211 000000000000   0001111678899999753  333456788999999999987


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCC
Q 028303           90 RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL  123 (210)
Q Consensus        90 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  123 (210)
                      . .++..+...+..+.... ...++.+|+|+++.
T Consensus        78 ~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          78 P-TSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             h-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence            4 34444444444443332 24577899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.60  E-value=6.1e-05  Score=60.52  Aligned_cols=58  Identities=26%  Similarity=0.395  Sum_probs=42.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (210)
                      ...++++|+|.|++||||+||+|...........+ |.+.....+..+.   .+.|.|.||-
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p-GvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP-GVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCc-cchhhhhheeccC---CceeccCCce
Confidence            35689999999999999999999988875543333 5555555454443   4668999993

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.55  E-value=0.0011  Score=55.15  Aligned_cols=91  Identities=19%  Similarity=0.108  Sum_probs=51.4

Q ss_pred             EEEEEEEecCCcchhhh----hhHHhhc---cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303           54 PIKLQIWDTAGQESFRS----ITRSYYR---GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~----~~~~~~~---~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  126 (210)
                      .+.+.|+||+|......    ....++.   ...-+++|++++-..  ..+...+..+...   + +--+++||.|-.. 
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~-  371 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETS-  371 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEecccccc-
Confidence            35788999999654331    2222333   334678888886532  2233333332211   2 2358899999633 


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303          127 RAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                         ..-.+..++...+.|+..++  +|.++
T Consensus       372 ---~~G~i~~~~~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        372 ---SLGSILSLLIESGLPISYLT--NGQRV  396 (424)
T ss_pred             ---cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence               22356677777888876664  45554

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.55  E-value=0.00059  Score=39.62  Aligned_cols=46  Identities=20%  Similarity=0.208  Sum_probs=29.4

Q ss_pred             hccccEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCC
Q 028303           76 YRGAAGALLVYDITR--RETFNHLSSWLEDARQHANPNMSIMLVGNKCD  122 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (210)
                      .+-.++++|++|++.  +.+.+.-...+..++.... +.|+++|+||+|
T Consensus        11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            345689999999996  4456666667777776653 689999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.54  E-value=0.00099  Score=42.94  Aligned_cols=69  Identities=19%  Similarity=0.209  Sum_probs=44.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh-hHHhhccccEEEEEEE
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYD   87 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~V~d   87 (210)
                      +++.|..|+|||++...+...-...      +..    ...++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~~----v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKR------GKR----VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC------CCe----EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            6788999999999988876442210      001    12222    6779999986533321 2455668899999998


Q ss_pred             CCCh
Q 028303           88 ITRR   91 (210)
Q Consensus        88 ~~~~   91 (210)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            8754

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.54  E-value=0.0009  Score=46.39  Aligned_cols=25  Identities=24%  Similarity=0.481  Sum_probs=21.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      -.+++.|++|+|||++++.+...-.
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhh
Confidence            4689999999999999999987643

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.53  E-value=0.0026  Score=52.18  Aligned_cols=91  Identities=12%  Similarity=-0.004  Sum_probs=51.4

Q ss_pred             EEEEEEEecCCcchhhh----hhHHhhcc--cc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303           54 PIKLQIWDTAGQESFRS----ITRSYYRG--AA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~----~~~~~~~~--~d-~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  126 (210)
                      .+.+.++||+|......    .....+..  .+ -.++|+|++...  ..+...+......    -+-=+++||.|-...
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~~  327 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETTC  327 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCCc
Confidence            45788999999654332    11222222  23 588999998753  2333333333211    134588999996332


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303          127 RAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                          .=.+..++...+.|+..++  +|.++
T Consensus       328 ----~G~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        328 ----VGNLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             ----chHHHHHHHHHCCCEEEEe--CCCCC
Confidence                2335556666777765553  45666

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.51  E-value=0.00076  Score=54.80  Aligned_cols=85  Identities=13%  Similarity=0.074  Sum_probs=46.8

Q ss_pred             EEEEEEecCCcchhhhh----hHHhhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           55 IKLQIWDTAGQESFRSI----TRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                      +.+.|+||+|.......    ...+..  ..+.+++|+++...  ..++...+..+..    --+--+|+||.|-...  
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~----l~i~glI~TKLDET~~--  357 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLAE----IPIDGFIITKMDETTR--  357 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcCc----CCCCEEEEEcccCCCC--
Confidence            57889999997543321    122222  34677778876432  2233333322211    1233578999996432  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEe
Q 028303          129 VSKEEGEQFAKENGLLFLEAS  149 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s  149 (210)
                        .=.+...+...+.|+..++
T Consensus       358 --~G~~Lsv~~~tglPIsylt  376 (407)
T PRK12726        358 --IGDLYTVMQETNLPVLYMT  376 (407)
T ss_pred             --ccHHHHHHHHHCCCEEEEe
Confidence              2335566677788866664

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.45  E-value=0.0016  Score=50.86  Aligned_cols=138  Identities=18%  Similarity=0.110  Sum_probs=73.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCC-----------C----------CCCCceeEEEEEEEE----------E-CCEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-----------V----------HDLTIGVEFGARMVT----------I-DGRP   54 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-----------~----------~~~~~~~~~~~~~~~----------~-~~~~   54 (210)
                      -+++++|++|+||||++..+...-...           .          +....+..+... ..          . ....
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence            589999999999999988875431100           0          000011111110 00          0 1124


Q ss_pred             EEEEEEecCCcchhhh----hhHHhh--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           55 IKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                      +.+.++||+|......    .+...+  ...+-+++|+|++...  .++..+...+...    .+-=+++||.|-...  
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~~----~~~~~I~TKlDet~~--  226 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETAS--  226 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCCC----CCCEEEEEeecCCCC--
Confidence            5788999999653322    111222  2456789999987432  1232333333221    233588999996442  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303          129 VSKEEGEQFAKENGLLFLEASARTAQNVE  157 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  157 (210)
                        .=.+..++...+.|+..++  +|+++.
T Consensus       227 --~G~~l~~~~~~~~Pi~~it--~Gq~vp  251 (270)
T PRK06731        227 --SGELLKIPAVSSAPIVLMT--DGQDVK  251 (270)
T ss_pred             --ccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence              2235556666788866554  344443

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.45  E-value=0.00013  Score=49.58  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

...

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.40  E-value=0.00018  Score=42.71  Aligned_cols=22  Identities=36%  Similarity=0.444  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..+|.|++|+|||||++++.--
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3799999999999999987643

>PRK08118 topology modulation protein; Reviewed

Probab=97.39  E-value=0.00016  Score=52.39  Aligned_cols=24  Identities=46%  Similarity=0.570  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .+|+|+|++|||||||.+.|....
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999998653

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.38  E-value=0.00094  Score=46.29  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      --|++.|+.|+|||||++.+...-
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            358999999999999999998764

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.38  E-value=0.004  Score=50.36  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.+|.|.-|||||||+++++..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         6 VTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3678899999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.38  E-value=0.00014  Score=54.60  Aligned_cols=68  Identities=18%  Similarity=0.108  Sum_probs=36.8

Q ss_pred             EEEEEEecCCcchhhhh------hHHhhccccEEEEEE---EC---CChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCC
Q 028303           55 IKLQIWDTAGQESFRSI------TRSYYRGAAGALLVY---DI---TRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD  122 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~------~~~~~~~~d~~i~V~---d~---~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (210)
                      -...++|+|||-++...      ....+...|.=+.++   |.   ++|..+-.  ..+..+.....-..|-|=|+.|+|
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~D  174 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKAD  174 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhH
Confidence            35679999997654431      222333455444444   43   34544322  222222222223678888999999


Q ss_pred             CC
Q 028303          123 LA  124 (210)
Q Consensus       123 ~~  124 (210)
                      +.
T Consensus       175 l~  176 (290)
T KOG1533|consen  175 LL  176 (290)
T ss_pred             HH
Confidence            84

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.36  E-value=0.00016  Score=52.81  Aligned_cols=23  Identities=35%  Similarity=0.665  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .+|+|+|+|||||||+.++|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.36  E-value=0.00048  Score=55.19  Aligned_cols=127  Identities=17%  Similarity=0.137  Sum_probs=78.5

Q ss_pred             cCCc-chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028303           62 TAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE  140 (210)
Q Consensus        62 ~~G~-~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  140 (210)
                      .+|+ ..+.......+..+|+++-|+|+.+|.+....     .+..... +.|.++|+||.|+..... ..+..+.+..+
T Consensus        17 ~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~-----~l~~~v~-~k~~i~vlNK~DL~~~~~-~~~W~~~~~~~   89 (322)
T COG1161          17 FPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP-----ELERIVK-EKPKLLVLNKADLAPKEV-TKKWKKYFKKE   89 (322)
T ss_pred             CCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc-----cHHHHHc-cCCcEEEEehhhcCCHHH-HHHHHHHHHhc
Confidence            3664 36666788888999999999999998653221     1122221 345599999999965333 23334444444


Q ss_pred             cCCeEEEEecCCCCCHHHHHHHHHHH---HHHHHhhccccccccCCcccccCCCCCCC
Q 028303          141 NGLLFLEASARTAQNVEEAFIKTAAK---ILQNIQEGALDAVNDSGIKVGYGRGQGPS  195 (210)
Q Consensus       141 ~~~~~~~~sa~~~~~i~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (210)
                      .+...+.++++.+.+...+...+...   ..+...+.......-....+|.++.|+|+
T Consensus        90 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSs  147 (322)
T COG1161          90 EGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKST  147 (322)
T ss_pred             CCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHH
Confidence            46667888888887777666543333   33333333222222337888888877764

>TIGR00235 udk uridine kinase

Probab=97.35  E-value=0.00026  Score=53.07  Aligned_cols=29  Identities=21%  Similarity=0.192  Sum_probs=25.8

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |..+...-|+|+|++|||||||++.+.+.
T Consensus         1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            66777788999999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.35  E-value=0.0014  Score=43.66  Aligned_cols=100  Identities=15%  Similarity=0.038  Sum_probs=56.8

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCCh
Q 028303           12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR   91 (210)
Q Consensus        12 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~   91 (210)
                      =+..|+||||+...|...-........     ........... .+.++|+|+....  .....+..+|.++++.+.+. 
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~-----~l~d~d~~~~~-D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-   76 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRV-----LLVDLDLQFGD-DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-   76 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcE-----EEEECCCCCCC-CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-
Confidence            456789999986666432111101111     00001111111 6789999986533  33456788999999998764 


Q ss_pred             hhHHHHHHHHHHHHhhcCC-CCeEEEEEec
Q 028303           92 ETFNHLSSWLEDARQHANP-NMSIMLVGNK  120 (210)
Q Consensus        92 ~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK  120 (210)
                      .+...+..+...+...... ...+.+|+|+
T Consensus        77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            4556666666666554433 3466677774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.35  E-value=0.00018  Score=50.44  Aligned_cols=21  Identities=33%  Similarity=0.574  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+++|++|||||||++.|...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999844

...

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.32  E-value=0.0026  Score=44.80  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            46899999999999999998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.32  E-value=0.0028  Score=46.21  Aligned_cols=85  Identities=28%  Similarity=0.302  Sum_probs=59.6

Q ss_pred             EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028303           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE  132 (210)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  132 (210)
                      ..+.+.++|+|+....  .....+..+|.+++++..+. .+...+..++..+...   +.|+.+|+|++|....   ..+
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            4568899999976432  33456688999999999874 3555666666655543   5678899999996432   345


Q ss_pred             HHHHHHHHcCCeEE
Q 028303          133 EGEQFAKENGLLFL  146 (210)
Q Consensus       133 ~~~~~~~~~~~~~~  146 (210)
                      ++++++...+++++
T Consensus       162 ~~~~~~~~~~~~vl  175 (179)
T cd03110         162 EIEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHHcCCCeE
Confidence            67778887787754

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.32  E-value=0.0003  Score=54.95  Aligned_cols=60  Identities=23%  Similarity=0.362  Sum_probs=36.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC----CCCCceeEEEEEE-EEECCEEEEEEEEecCCc
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----HDLTIGVEFGARM-VTIDGRPIKLQIWDTAGQ   65 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~   65 (210)
                      ..+++.|+|.||+|||||+|.+........    ...-.+.+..... +.+.... .+.+.||||-
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            458899999999999999998864432221    1111133333332 3343333 3779999993

>PRK07261 topology modulation protein; Provisional

Probab=97.31  E-value=0.00022  Score=51.86  Aligned_cols=23  Identities=39%  Similarity=0.592  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .+|+|+|++|||||||.+.|...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998744

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.31  E-value=0.0017  Score=55.33  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -+++.||+||||||.++.|...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3577999999999999998755

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.25  E-value=0.00037  Score=52.29  Aligned_cols=29  Identities=21%  Similarity=0.252  Sum_probs=24.8

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+-.....|+|.|++|||||||.+.|...
T Consensus         1 ~~~~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          1 MMMKKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34456789999999999999999999865

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.25  E-value=0.00026  Score=53.82  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      |.++|++|||||||++.+.+-..
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            68999999999999999987643

>PRK10646 ADP-binding protein; Provisional

Probab=97.23  E-value=0.0027  Score=45.07  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -|++-|+-|+|||||++.+...-
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48899999999999999997653

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.0012  Score=53.32  Aligned_cols=51  Identities=14%  Similarity=0.129  Sum_probs=31.9

Q ss_pred             CEEEEEEEEecCCcchhhh-----hh-HHhhccccEEEEEEECCChhhHHHHHHHHH
Q 028303           52 GRPIKLQIWDTAGQESFRS-----IT-RSYYRGAAGALLVYDITRRETFNHLSSWLE  102 (210)
Q Consensus        52 ~~~~~~~i~D~~G~~~~~~-----~~-~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~  102 (210)
                      ..++.+.|.||.|......     +. -.-.-..|-+|||.|++-+..-......++
T Consensus       181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk  237 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK  237 (483)
T ss_pred             hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence            3457899999999543222     11 112235799999999998766444444333

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.21  E-value=0.00032  Score=48.76  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            57999999999999999998764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.20  E-value=0.00043  Score=50.20  Aligned_cols=29  Identities=24%  Similarity=0.279  Sum_probs=24.9

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+.....-+.|+|++|||||||++++...
T Consensus         1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence            55666677899999999999999999865

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.20  E-value=0.00041  Score=42.37  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999865

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.18  E-value=0.0032  Score=45.83  Aligned_cols=44  Identities=27%  Similarity=0.148  Sum_probs=27.9

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      |++++|+|+.++.+..+ ..+...+. ....+.|+|+|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            78999999988643221 12222211 1123579999999999854

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.18  E-value=0.019  Score=47.53  Aligned_cols=28  Identities=39%  Similarity=0.432  Sum_probs=23.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      +-.-+|+++||.|+|||||+..|++...
T Consensus       611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl~  638 (807)
T KOG0066|consen  611 DMDSRIAIVGPNGVGKSTLLKLLIGKLD  638 (807)
T ss_pred             cccceeEEECCCCccHHHHHHHHhcCCC
Confidence            3456899999999999999999987643

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.14  E-value=0.00052  Score=51.11  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++||+|||||||++.+-+-.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            47899999999999999998654

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.13  E-value=0.00046  Score=56.42  Aligned_cols=63  Identities=19%  Similarity=0.065  Sum_probs=38.5

Q ss_pred             EEEEEEecCCcchhhhhhH------HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCC
Q 028303           55 IKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL  123 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  123 (210)
                      +.+.|+||+|.-..+...-      ...-+.|=+++|+|+.-+..-.+....|+.-...      .=+|+||.|-
T Consensus       183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i------tGvIlTKlDG  251 (451)
T COG0541         183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI------TGVILTKLDG  251 (451)
T ss_pred             CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC------ceEEEEcccC
Confidence            5788999999654443211      1233678999999999877655555544433211      1255666664

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.12  E-value=0.0092  Score=47.07  Aligned_cols=75  Identities=21%  Similarity=0.295  Sum_probs=44.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcc--ccEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG--AAGALL   84 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--~d~~i~   84 (210)
                      -.|+|.|++||||||+++.|-...+                ..          +|-.....+..+.......  .+.+.+
T Consensus         7 ~~i~i~G~~GsGKtt~~~~l~~~g~----------------~~----------~d~~~~~L~~~l~~~~~~~~~~~~~av   60 (288)
T PRK05416          7 RLVIVTGLSGAGKSVALRALEDLGY----------------YC----------VDNLPPSLLPKLVELLAQSGGIRKVAV   60 (288)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHcCC----------------eE----------ECCcCHHHHHHHHHHHHhcCCCCCeEE
Confidence            4689999999999999999952211                11          2222223333333333322  356788


Q ss_pred             EEECCChhhHHHHHHHHHHHHhh
Q 028303           85 VYDITRRETFNHLSSWLEDARQH  107 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~  107 (210)
                      ++|+............+..+...
T Consensus        61 ~iD~r~~~~~~~~~~~~~~L~~~   83 (288)
T PRK05416         61 VIDVRSRPFFDDLPEALDELRER   83 (288)
T ss_pred             EEccCchhhHHHHHHHHHHHHHc
Confidence            88888765444555555555543

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.12  E-value=0.00091  Score=45.68  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      --|++-|+-|+|||||++.+...-
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc
Confidence            458999999999999999987653

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.11  E-value=0.0002  Score=57.69  Aligned_cols=83  Identities=19%  Similarity=0.145  Sum_probs=51.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh--hhhHHhhccccE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--SITRSYYRGAAG   81 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~~~~~~~~~~d~   81 (210)
                      ...+-|+++|.|++||||+||.|-..+.....+.+ +.+..   +.+---.-++.++|+||--...  ......++   +
T Consensus       305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIp-GETKV---WQYItLmkrIfLIDcPGvVyps~dset~ivLk---G  377 (572)
T KOG2423|consen  305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIP-GETKV---WQYITLMKRIFLIDCPGVVYPSSDSETDIVLK---G  377 (572)
T ss_pred             ccceeeeeecCCCCchHHHHHHHhhcccccccCCC-CcchH---HHHHHHHhceeEecCCCccCCCCCchHHHHhh---c
Confidence            35688999999999999999999988876654443 21111   1110112257799999954222  22333333   5


Q ss_pred             EEEEEECCChhh
Q 028303           82 ALLVYDITRRET   93 (210)
Q Consensus        82 ~i~V~d~~~~~s   93 (210)
                      ++=|-.+.+++.
T Consensus       378 vVRVenv~~pe~  389 (572)
T KOG2423|consen  378 VVRVENVKNPED  389 (572)
T ss_pred             eeeeeecCCHHH
Confidence            666777777653

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.11  E-value=0.00054  Score=52.18  Aligned_cols=29  Identities=28%  Similarity=0.454  Sum_probs=24.6

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |.....++|+|+|+|||||||+.+.|...
T Consensus         1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          1 MKLKGPLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            45556789999999999999999998653

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00054  Score=51.44  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKRFQP   33 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~~~~   33 (210)
                      -+++||+|||||||...+.+.+...
T Consensus        33 haiMGPNGsGKSTLa~~i~G~p~Y~   57 (251)
T COG0396          33 HAIMGPNGSGKSTLAYTIMGHPKYE   57 (251)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCce
Confidence            3799999999999999999986533

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.10  E-value=0.00043  Score=53.30  Aligned_cols=21  Identities=38%  Similarity=0.446  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ++++||+|||||||++.+.+-
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            689999999999999999864

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.07  E-value=0.00047  Score=52.04  Aligned_cols=24  Identities=33%  Similarity=0.350  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      -++++||+|||||||++-+-+-..
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            378999999999999999986543

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.06  E-value=0.00036  Score=50.21  Aligned_cols=22  Identities=23%  Similarity=0.536  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.06  E-value=0.0032  Score=44.21  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      -|++-|+-|+|||||.+.+...--
T Consensus        27 Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802          27 VVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             EEEEEcCCcCChHHHHHHHHHHcC
Confidence            478999999999999999976543

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.05  E-value=0.0006  Score=46.81  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999998663

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.04  E-value=0.00035  Score=50.79  Aligned_cols=24  Identities=29%  Similarity=0.547  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .-++|.||+|+|||||+++|....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457899999999999999999775

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.04  E-value=0.00059  Score=50.78  Aligned_cols=22  Identities=36%  Similarity=0.487  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.+++||+|||||||++.|-..
T Consensus        35 VTAlIGPSGcGKST~LR~lNRm   56 (253)
T COG1117          35 VTALIGPSGCGKSTLLRCLNRM   56 (253)
T ss_pred             eEEEECCCCcCHHHHHHHHHhh
Confidence            3589999999999999988643

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.04  E-value=0.00061  Score=50.19  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .|+|+|++|||||||++.|.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999997653

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.03  E-value=0.0073  Score=50.97  Aligned_cols=21  Identities=24%  Similarity=0.518  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .+|.||+||||||.++-|...
T Consensus       113 LLltGPsGcGKSTtvkvLske  133 (634)
T KOG1970|consen  113 LLLTGPSGCGKSTTVKVLSKE  133 (634)
T ss_pred             EEEeCCCCCCchhHHHHHHHh
Confidence            578999999999999998754

>PRK06217 hypothetical protein; Validated

Probab=97.03  E-value=0.00063  Score=49.97  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .+|+|+|.+|||||||.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999865

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.02  E-value=0.019  Score=41.56  Aligned_cols=84  Identities=12%  Similarity=-0.025  Sum_probs=50.1

Q ss_pred             EEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHH
Q 028303           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE  135 (210)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  135 (210)
                      .+.++|+|+....  .....+..+|.+|++++.+.. +...+..+...+....  .....+++|+.+.....  ..+...
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence            6889999986433  244556889999999988753 4444545555544421  23567889999864321  112223


Q ss_pred             HHHHHcCCeEE
Q 028303          136 QFAKENGLLFL  146 (210)
Q Consensus       136 ~~~~~~~~~~~  146 (210)
                      .+.+..+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            34444566654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.01  E-value=0.00074  Score=46.41  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=22.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP   33 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~   33 (210)
                      -.++++|++|+|||++++.+...-...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            468999999999999999998765433

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.00  E-value=0.00068  Score=47.39  Aligned_cols=21  Identities=38%  Similarity=0.703  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999865

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK01889 GTPase RsgA; Reviewed

Probab=96.99  E-value=0.0008  Score=54.72  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=21.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      -+++++|.+|+|||||++.|.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            3689999999999999999997543

>PRK03839 putative kinase; Provisional

Probab=96.98  E-value=0.0007  Score=49.52  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +|+|+|++||||||+.++|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999765

>PRK04195 replication factor C large subunit; Provisional

Probab=96.96  E-value=0.019  Score=48.75  Aligned_cols=25  Identities=24%  Similarity=0.410  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .-.++|.|++|+||||+++.+...-
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3468999999999999999998653

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.96  E-value=0.0076  Score=47.43  Aligned_cols=104  Identities=15%  Similarity=0.226  Sum_probs=61.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc-------------------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ-------------------   65 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------------------   65 (210)
                      ....++++|++|.|||+++++|....-... ... .            ..+.+....+|..                   
T Consensus        60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~  125 (302)
T PF05621_consen   60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DED-A------------ERIPVVYVQMPPEPDERRFYSAILEALGAPYR  125 (302)
T ss_pred             CCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence            446799999999999999999997543221 111 0            0112333344331                   


Q ss_pred             -----chhhhhhHHhhccccEEEEEEECCC---hhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCC
Q 028303           66 -----ESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHAN-PNMSIMLVGNKCD  122 (210)
Q Consensus        66 -----~~~~~~~~~~~~~~d~~i~V~d~~~---~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D  122 (210)
                           ..........++...+=++|+|=-+   ..+...-+..++.++.... ..+|+|.||+.--
T Consensus       126 ~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A  191 (302)
T PF05621_consen  126 PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA  191 (302)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence                 1112233456777888889998543   1233334455555555443 5799999997543

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.96  E-value=0.00077  Score=49.23  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHH
Q 028303            7 FKYIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~   27 (210)
                      -.++|+|++|+|||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            368999999999999999886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.96  E-value=0.00071  Score=46.24  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999865

...

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.95  E-value=0.00067  Score=54.31  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      ++++||+|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998754

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.95  E-value=0.00072  Score=51.89  Aligned_cols=22  Identities=36%  Similarity=0.456  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -++|+||+|+|||||++.+++-
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLGl   53 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILGL   53 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999999984

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.93  E-value=0.00081  Score=49.10  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK14530 adenylate kinase; Provisional

Probab=96.93  E-value=0.00086  Score=50.59  Aligned_cols=23  Identities=17%  Similarity=0.447  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .+|+|+|+|||||||+.+.|...
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~   26 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEE   26 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999643

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.92  E-value=0.00085  Score=50.63  Aligned_cols=23  Identities=35%  Similarity=0.408  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            57999999999999999999764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.92  E-value=0.00086  Score=44.60  Aligned_cols=21  Identities=38%  Similarity=0.711  Sum_probs=18.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHH
Q 028303            7 FKYIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~   27 (210)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            357999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.90  E-value=0.00087  Score=48.94  Aligned_cols=22  Identities=36%  Similarity=0.599  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4799999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.90  E-value=0.0012  Score=49.38  Aligned_cols=23  Identities=26%  Similarity=0.559  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.|+|+|++|||||||++.|.+.
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            45899999999999999999875

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.88  E-value=0.00091  Score=49.71  Aligned_cols=22  Identities=23%  Similarity=0.373  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      |+|.|++|||||||++.|.+.-
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999998653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=96.88  E-value=0.025  Score=42.89  Aligned_cols=102  Identities=9%  Similarity=0.096  Sum_probs=64.6

Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE  132 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  132 (210)
                      +.+.|+|+.|....  .....+..+|.+|+=.-.+..+..+.  ...|+..+.......+|.-|+.|++.-.. ......
T Consensus        84 ~d~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~~  160 (231)
T PF07015_consen   84 FDFVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQR  160 (231)
T ss_pred             CCEEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHHH
Confidence            56889999886532  24456668999998776664433222  33455555555557899999999987421 111122


Q ss_pred             HHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303          133 EGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      .+.++..  ++|++.+......-+.+++.
T Consensus       161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  161 IISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHh--cCCccccccccHHHHHHHHH
Confidence            2333433  58888888888777777766

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK13949 shikimate kinase; Provisional

Probab=96.88  E-value=0.001  Score=48.22  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +|+|+|++||||||+.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988754

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.88  E-value=0.00098  Score=50.01  Aligned_cols=23  Identities=35%  Similarity=0.457  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999999764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.87  E-value=0.0012  Score=49.47  Aligned_cols=25  Identities=28%  Similarity=0.545  Sum_probs=21.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...-|+|+|++|||||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3456889999999999999999754

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.87  E-value=0.007  Score=45.05  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      |+|+|++||||||+++.+....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.87  E-value=0.001  Score=49.76  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999999764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.86  E-value=0.001  Score=50.15  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999764

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.86  E-value=0.0011  Score=46.21  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3799999999999999988754

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.86  E-value=0.00096  Score=49.25  Aligned_cols=23  Identities=35%  Similarity=0.574  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|+|||||++.+.+..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999998764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=96.85  E-value=0.00068  Score=59.10  Aligned_cols=120  Identities=20%  Similarity=0.165  Sum_probs=73.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcee---------------EEE------------------------
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV---------------EFG------------------------   44 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---------------~~~------------------------   44 (210)
                      -....|+|+|..++||||.+..+.+..+.+-...-.+-               +..                        
T Consensus        27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e  106 (657)
T KOG0446|consen   27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE  106 (657)
T ss_pred             ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence            45578999999999999999999986543321110000               000                        


Q ss_pred             --------------EEEEEEC-CEEEEEEEEecCCc-------------chhhhhhHHhhccccEEEEEEECCChhhHHH
Q 028303           45 --------------ARMVTID-GRPIKLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVYDITRRETFNH   96 (210)
Q Consensus        45 --------------~~~~~~~-~~~~~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~   96 (210)
                                    ...+.+. -.-..+++.|.||.             .....+...++...+.+|+.+...+-+  -.
T Consensus       107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--~a  184 (657)
T KOG0446|consen  107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--IA  184 (657)
T ss_pred             HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--hh
Confidence                          0011111 11125678899992             244457778888889899888876621  11


Q ss_pred             HHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           97 LSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        97 ~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      ...++.........+...+-|++|.|+.+
T Consensus       185 ts~alkiarevDp~g~RTigvitK~Dlmd  213 (657)
T KOG0446|consen  185 TSPALVVAREVDPGGSRTLEVITKFDFMD  213 (657)
T ss_pred             cCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence            12345555555556678888888888743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-81
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		5e-81
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		4e-66
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		7e-66
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		7e-59
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-58
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		6e-56
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-55
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		8e-51
4fmc_B	171	Espg-Rab1 Complex Length = 171		4e-50
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		5e-50
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-49
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-49
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-49
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-49
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		5e-49
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		6e-49
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		6e-49
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		6e-49
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		7e-49
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		7e-49
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-48
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		3e-48
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		4e-48
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		4e-48
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		5e-48
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		5e-48
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-47
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-47
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		6e-47
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		9e-47
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-46
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-46
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-46
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		6e-45
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-44
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-44
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-44
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		6e-44
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		7e-44
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		5e-43
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		6e-42
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		6e-42
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-41
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-40
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		4e-40
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		4e-40
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		6e-40
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		7e-40
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		8e-40
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-39
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-39
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-39
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-39
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-39
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-39
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-39
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-39
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		7e-39
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		8e-39
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-38
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-38
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		4e-38
2efc_B	181	Ara7-GdpATVPS9A Length = 181		7e-38
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-37
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-37
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		7e-37
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-36
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		5e-36
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		6e-36
4fmc_F	117	Espg-Rab1 Complex Length = 117		8e-36
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-35
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		5e-35
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-35
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		7e-35
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		7e-34
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-33
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-32
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-32
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		5e-32
1vg1_A	185	Gdp-bound Rab7 Length = 185		6e-32
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-31
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-31
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-31
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-31
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-31
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		4e-31
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		4e-31
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		6e-31
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		6e-31
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		9e-30
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-29
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		6e-29
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		6e-29
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		8e-28
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-27
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-27
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-27
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		9e-27
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		4e-26
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		8e-24
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-23
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-22
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-22
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		3e-22
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-22
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-22
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-22
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		4e-22
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		6e-22
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		8e-22
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		9e-22
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		9e-22
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		9e-22
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-21
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-21
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-21
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-21
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		6e-21
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		6e-21
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		6e-21
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		7e-21
2bku_A	177	Kap95p:rangtp Complex Length = 177		7e-21
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		7e-21
1byu_A	216	Canine Gdp-Ran Length = 216		7e-21
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		7e-21
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		9e-21
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		9e-21
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		9e-21
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-20
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-20
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-20
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-20
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		4e-20
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		5e-20
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		5e-20
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		7e-20
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		8e-20
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-19
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		4e-19
3icq_B	171	Karyopherin Nuclear State Length = 171		4e-19
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		4e-19
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-19
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-18
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		3e-18
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		4e-18
1s1c_A	183	Crystal Structure Of The Complex Between The Human		4e-18
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		4e-18
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-18
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		4e-18
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		4e-18
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		4e-18
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		5e-18
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		5e-18
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		5e-18
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		5e-18
1mh1_A	186	Small G-Protein Length = 186		6e-18
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		6e-18
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		8e-18
4q21_A	189	Molecular Switch For Signal Transduction: Structura		8e-18
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		9e-18
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		9e-18
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		9e-18
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-17
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-17
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-17
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		1e-17
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-17
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-17
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-17
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-17
6q21_A	171	Molecular Switch For Signal Transduction: Structura		1e-17
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		1e-17
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-17
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-17
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-17
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-17
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-17
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-17
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-17
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-17
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-17
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-17
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-17
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-17
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-17
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-17
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-17
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-17
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-17
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-17
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		3e-17
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		3e-17
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		3e-17
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		3e-17
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-17
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		3e-17
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-17
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		4e-17
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-17
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		5e-17
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		5e-17
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		6e-17
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		6e-17
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		6e-17
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		6e-17
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		6e-17
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		7e-17
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		8e-17
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-17
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-16
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-16
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-16
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-16
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-16
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-16
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-16
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		1e-16
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-16
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-16
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-16
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-16
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-16
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-16
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-16
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		2e-16
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-16
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		3e-16
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		4e-16
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		4e-16
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		8e-16
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		9e-16
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		1e-15
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-15
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-15
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-15
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-15
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-15
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-15
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		3e-15
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		3e-15
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		3e-15
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		4e-15
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-14
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-14
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		2e-14
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		4e-14
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-13
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		3e-13
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		5e-13
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		7e-13
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		9e-13
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		9e-13
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		9e-13
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		9e-13
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		9e-13
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		1e-12
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-12
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-12
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-12
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-12
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		1e-12
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		1e-12
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		1e-12
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-12
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-12
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-12
2kb0_A	178	Cdc42(T35a) Length = 178		2e-12
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-12
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-12
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		3e-12
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		3e-12
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		5e-12
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		6e-12
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		7e-12
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		7e-12
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		8e-12
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		8e-12
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		2e-11
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		3e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-11
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-11
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		7e-11
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		7e-11
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		8e-11
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		4e-10
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		6e-10
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-09
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		3e-09
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		2e-06
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		2e-06
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		2e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		5e-06
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		5e-06
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		1e-05
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		1e-05
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		3e-05
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-05
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		3e-05
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		3e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		3e-05
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-05
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		4e-05
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		9e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-04
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		1e-04
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		1e-04
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		1e-04
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		1e-04
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		2e-04
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-04
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		2e-04
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-04
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-04
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		2e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		3e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		5e-04
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		6e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		6e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		6e-04
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		7e-04
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		9e-04

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  298 bits (762), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 138/168 (82%), Positives = 153/168 (91%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWD
Sbjct: 6   AYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWD 65
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK 
Sbjct: 66  TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKS 125
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I +
Sbjct: 126 DLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  296 bits (759), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 140/170 (82%), Positives = 154/170 (90%)
Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV IDG+ IKLQIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH++ NM IML+GNK DL 
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
            RR V +EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQ+G
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 189

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  247 bits (630), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 116/171 (67%), Positives = 139/171 (81%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWD
Sbjct: 26  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 85
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQ  FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK 
Sbjct: 86  TAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 145
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
           DL  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QNIQ
Sbjct: 146 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ 196

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  246 bits (628), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 115/169 (68%), Positives = 138/169 (81%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWD
Sbjct: 11  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK 
Sbjct: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 130
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           DL  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QN
Sbjct: 131 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  223 bits (567), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 105/176 (59%), Positives = 137/176 (77%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YD+LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG++++ + G+ +KLQIWD
Sbjct: 6   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK 
Sbjct: 66  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
           DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF++ A KIL  I+ G LD
Sbjct: 126 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/174 (60%), Positives = 132/174 (75%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D+LFK+++IG  G GKSCLL QF + +F+   + TIGVEFG+R+V + G+ +KLQIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+PN+ ++L GNK DL
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
              R V+  E  +FA+EN L+FLE SA T +NVEEAF+K A  IL  I  G LD
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  213 bits (542), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 132/168 (78%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YD+LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG++++ + G+ +KLQIWD
Sbjct: 7   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 66
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK 
Sbjct: 67  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 126
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           DL   R V+  E  +FA+EN L+FLE SA T ++VEEAF++ A KIL 
Sbjct: 127 DLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 174

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 131/168 (77%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YD+LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG++++ + G+ +KLQIWD
Sbjct: 4   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 63
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAG E FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK 
Sbjct: 64  TAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 123
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           DL   R V+  E  +FA+EN L+FLE SA T ++VEEAF++ A KIL 
Sbjct: 124 DLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 171

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  196 bits (498), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 127/173 (73%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 13  YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 73  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 175
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I + +  GA
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA 185

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  194 bits (492), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 123/165 (74%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 3   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 63  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  193 bits (491), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 123/165 (74%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 22  YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 81
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 82  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 141
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 142 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 123/165 (74%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGK+CLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 13  YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 73  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 126/170 (74%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R ++++ + +KLQIWDT
Sbjct: 6   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDT 65
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T R++F+++  W+++  ++A  N++ +LVGNKCD
Sbjct: 66  AGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCD 125
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
           L  +R V+ +EG + A  +G+ F+E SA+ A NVE+AF   A +I + +Q
Sbjct: 126 LVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 122/165 (73%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 30  YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 89
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 90  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 149
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F   AA+I
Sbjct: 150 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 114/159 (71%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           SYDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWD
Sbjct: 16  SYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 75
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK 
Sbjct: 76  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 135
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           DL H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 136 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 174

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 122/165 (73%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD LFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 3   YDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 63  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  190 bits (482), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 135/207 (65%), Gaps = 6/207 (2%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + V +DG+ +KLQIWDT
Sbjct: 5   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKCD
Sbjct: 65  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDS 182
           L  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I +++ +  L+     
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 184
Query: 183 GIKVGYGRGQGPSGARDGTVSQRGGCC 209
                    +G    +  +++  GGCC
Sbjct: 185 ------KEDKGNVNLKGQSLTNTGGCC 205

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  190 bits (482), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 112/158 (70%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L H RAV  +E   FA++N L F+E SA  + NVEEAF
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 159

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  189 bits (481), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 113/158 (71%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 26  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 86  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  189 bits (481), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 122/165 (73%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVG KCD
Sbjct: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 125 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  189 bits (481), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 92/207 (44%), Positives = 134/207 (64%), Gaps = 5/207 (2%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + V +DG+ +KLQIWDT
Sbjct: 5   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKCD
Sbjct: 65  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDS 182
           L  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I +++ +  L+     
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 184
Query: 183 GIKVGYGRGQGPSGARDGTVSQRGGCC 209
               G    +G S    G     GGCC
Sbjct: 185 KEDKGNVNLKGQSLTNTG-----GGCC 206

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/201 (46%), Positives = 130/201 (64%), Gaps = 4/201 (1%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD LFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + I+G+ IK QIWDT
Sbjct: 10  YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R+IT +YYRGA GAL+VYDI++  ++ + + WL + R++A+ N+++ L+GNK D
Sbjct: 70  AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDS 182
           LAH RAV  EE + FA+EN LLF E SA  ++NV++AF +    I Q + +  +D     
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDL---- 185
Query: 183 GIKVGYGRGQGPSGARDGTVS 203
           G     G   G S     T+S
Sbjct: 186 GDSSANGNANGASAPNGPTIS 206

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 112/158 (70%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 5   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 65  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 125 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 162

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 121/165 (73%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 6   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E++ ++  WL++  ++A+ N++ +LVGNK D
Sbjct: 66  AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE+AF+  AA+I
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  187 bits (474), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 121/165 (73%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 6   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E++ ++  WL++  ++A+ N++ +LVGNK D
Sbjct: 66  AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE+AF+  AA+I
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  187 bits (474), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 112/158 (70%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 26  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 86  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  187 bits (474), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 120/166 (72%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YDYLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R + +DG+ IKLQIWD
Sbjct: 4   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKC
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           D+  +R VSKE GE+ A + G+ F+E SA+   NVE AF   A  I
Sbjct: 124 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/158 (55%), Positives = 111/158 (70%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ I LVGNK D
Sbjct: 62  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 121
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 122 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/158 (55%), Positives = 111/158 (70%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ I LVGNK D
Sbjct: 68  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 127
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  183 bits (464), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 118/164 (71%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           DYLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R + +DG+ IKLQIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKCD+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
             +R VSKE GE+ A + G+ F+E SA+   NVE AF   A  I
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  182 bits (463), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 119/165 (72%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + V +DG+ +KLQIWDT
Sbjct: 18  YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 77
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKCD
Sbjct: 78  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 137
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I
Sbjct: 138 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 118/160 (73%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDTAGQE 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
           FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCDL  ++
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 128 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/175 (48%), Positives = 120/175 (68%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++ + IK QIWDT
Sbjct: 7   YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDT 66
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA GAL+VYDI++  ++ + + WL + R++A+ N+++ L+GNK D
Sbjct: 67  AGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSD 126
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
           LAH RAV  +E + FA EN +LF E SA  + NV++AF +    I Q + +  +D
Sbjct: 127 LAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVD 181

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 122/191 (63%), Gaps = 10/191 (5%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           SYD + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQ+WD
Sbjct: 16  SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++LVGNK 
Sbjct: 76  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 135
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           D+   R V+ ++GE  AKE G+ F+E+SA+   NV E F   A  I + I         D
Sbjct: 136 DM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI---------D 185
Query: 182 SGIKVGYGRGQ 192
           S   VG G G+
Sbjct: 186 SNKLVGVGNGK 196

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  176 bits (447), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 115/166 (69%), Gaps = 2/166 (1%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++LVGNK D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
              R V+ ++GE  AKE G+ F+E+SA+   NV E F  T AK++Q
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/159 (52%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWD 61
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  + + + + + IK QIWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE +R+IT +YYRGA GALLVYDIT++ +F ++  WL++ R +A+ N+ I+LVGNK 
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           DL H R ++  +  Q+AK+  L F+E SA  A NVE AF
Sbjct: 124 DLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAF 162

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 117/174 (67%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD+LFK ++IG+ GVGK+CL+ +FT   F P    TIGV+F  + V I+G  +KLQIWDT
Sbjct: 23  YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 82
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+A+  +  +LVGNK D
Sbjct: 83  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 142
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176
           LA RR VS++  E+F++   + +LE SA+ + NVE+ F+  A +++   ++  L
Sbjct: 143 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTL 196

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 114/166 (68%), Gaps = 2/166 (1%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++LVGNK D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
              R V+ ++GE  AKE G+ F+E+SA+   NV E F  T AK++Q
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  173 bits (438), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 79/164 (48%), Positives = 114/164 (69%), Gaps = 2/164 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQ+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           E FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++LVGNK D+  
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            R V+ ++GE  AKE G+ F+E+SA+   NV E F  T AK++Q
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 168

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  173 bits (438), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 80/166 (48%), Positives = 114/166 (68%), Gaps = 2/166 (1%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQ+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++LVGNK D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
              R V+ ++GE  AKE G+ F+E+SA+   NV E F  T AK++Q
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  170 bits (430), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           YD  FK +++GD+GVGK+CLL++F D  F       T+G++F  +++ +DG  +KLQ+WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++++ML+GNK 
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           D AH R V +E+GE+ AKE GL F+E SA+T  NV+ AF   A ++
Sbjct: 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  166 bits (421), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 110/171 (64%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           Y+++FK ++IG++GVGK+ LL +FT   F      TIGVEF  R V +    +K QIWDT
Sbjct: 22  YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 81
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   HA   + +MLVGNK D
Sbjct: 82  AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 141
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           L+  R V  EE   FA+ NGLLFLE SA  + NVE AF     +I   + +
Sbjct: 142 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  166 bits (421), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 110/171 (64%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           Y+++FK ++IG++GVGK+ LL +FT   F      TIGVEF  R V +    +K QIWDT
Sbjct: 7   YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 66
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   HA   + +MLVGNK D
Sbjct: 67  AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 126
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           L+  R V  EE   FA+ NGLLFLE SA  + NVE AF     +I   + +
Sbjct: 127 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 177

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD+LFK +++GD  VGK+C++ +F    F      TIGV+F  + + I G+ +KLQIWDT
Sbjct: 26  YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT+SYYR A GA+L YDIT+R +F  +  W+ED R++A  N+  +L+GNK D
Sbjct: 86  AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145
Query: 123 LAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 168
           L+  R VS  E +  A+   +L  +E SA+ + NVEEAF++ A +++
Sbjct: 146 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 110/164 (67%), Gaps = 2/164 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +IIG++GVGKS LLL+FTD  F P    TIGV+F  + +++DG   KL IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAH 125
            FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   +   N  +  LVGNK D   
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KE 134
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            R V + EG +FA+++  LF+EASA+T   V+ AF +   KI+Q
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  160 bits (406), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  160 bits (406), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  160 bits (404), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  159 bits (403), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  159 bits (403), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 107/161 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ A+PN+ I L GNK DLA +
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           RAV  +E + +A +N LLF+E SA+TA NV E F+  A K+
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 103/159 (64%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           ++DY+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +  + + IKLQIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKC
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           D+   R VS E G Q A   G  F EASA+   NV++ F
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD+LFK +IIGD+GVGKS LLL+F D  F   +  TIGV+F  R V I+G  +KLQIWDT
Sbjct: 6   YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDT 65
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL +  Q+ + ++  +LVGNK D
Sbjct: 66  AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKND 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
              R+ V  E+  +FA + G+   E SA+   NVEE F
Sbjct: 125 DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 108/161 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT +ETF    +W+++ ++ A+P++ I L GNK DLA++
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R V  EE + +A +N LLF+E SA+TA NV + F+  A K+
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 108/164 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF E SA+T+ NV E F   A K+ +N
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 1/169 (0%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D+  + IIIG  GVGK+ L+ +FTD  F      T+GV+F  + V + G+ I+LQIWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE F SIT +YYR A G +LVYDIT++ETF+ L  W++   ++A+ +  ++LVGNK D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 124 AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
              R +++++GE+FA++  G+ F EASA+   NV+E F+K    IL+ +
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  156 bits (395), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 106/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TI   F  + V +D   +K +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ A+PN+ I L GNK DLA +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           RAV  +E + +A +N LLF+E SA+TA NV E F+  A K+
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  156 bits (394), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 106/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ A+PN+ I L GNK DLA +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           RAV  +E + +A +N LLF+E SA+TA NV E F+  A K+
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 107/161 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 104/159 (65%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           ++DY+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + V    + +KLQIWD
Sbjct: 19  NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKC
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           D+   R V  E+G+  A++ G  F EASA+   +V +AF
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/192 (40%), Positives = 108/192 (56%), Gaps = 5/192 (2%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           +DY FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +  + + IKLQIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA G +L YDIT  E+FN +  W    + ++  N  ++LVGNKCD
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDS 182
               R VS E G Q A   G  F EASA+   NV++ F +    I +   E       D+
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESL-----DT 179
Query: 183 GIKVGYGRGQGP 194
                 G  QGP
Sbjct: 180 ADPAVTGAKQGP 191

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  153 bits (386), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 104/160 (65%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE 
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
           + S+   YYRGAA A++V+D+T + +F     W+++ +   NPNM + L GNK DL   R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 128 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            V+ E+ + +A+ENGL F+E SA+TA NV+E F + A ++
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 105/170 (61%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           DY+FK ++IG++ VGK+  L ++ D  F P    T+G++F  + V    + IKLQIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE +R+IT +YYRGA G LL+YDI  +E+F  +  W    + ++  N  ++LVGNKCDL
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
              R V  E+G + A + G  F EASA+   NV++ F +    I + + E
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R ++LQ+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F   S W++D R     ++ IMLVGNK DLA +
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           R ++ EEGEQ AKE  ++F+E SA+T  NV++ F + A+ +L+
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  150 bits (378), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 106/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R I+LQ+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +A A++VYDIT   +F   + W++D R     ++ IMLVGNK DLA +
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 106/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R ++LQ+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F+  S W++D R     ++ IMLVGNK DL+ +
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 105/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R ++LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F   + W++D R     ++ IMLVGNK DLA +
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  146 bits (369), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 105/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R I+LQ+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +A A++VYDIT   +F   + W++D R     ++ IMLVGNK DLA +
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  146 bits (369), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 90/115 (78%)
Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDTAGQE FR
Sbjct: 2   LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 70  SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           +IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCDL 
Sbjct: 62  TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 116

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 100/161 (62%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  ++GDTGVGKS ++ +F +  F P  + TIG  F  + V       K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH  P++ + + GNKCDL   
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R V + + + +A     +F+E SA+ A N+ E FI+ + +I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 104/161 (64%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R ++LQ+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F   + W++D R     ++ IMLVGNK DLA +
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 104/161 (64%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R ++LQ+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F   + W++D R     ++ IMLVGNK DLA +
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  143 bits (360), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 99/161 (61%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  ++GDTGVGKS ++ +F +  F P  + TIG  F  + V       K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH  P++ + + GNKCDL   
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R V + + + +A     +F+E SA+ A N+ E FI+ + +I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  140 bits (352), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 101/163 (61%), Gaps = 3/163 (1%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++G+  VGKS ++L+F    F    + TIG  F  + VTI+   +K +IWDTAGQE 
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           F S+   YYR A  AL+VYD+T+ ++F     W+++  + A+ ++ I LVGNK D     
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 126 -RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
             R V++EEGE+ A+E GLLF E SA+T +NV + F+    KI
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 102/161 (63%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K + +G+  VGK+ ++ +F    F   +  TIG++F ++ + +D  P++LQ+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +A A++VYDIT R++F + + W++D       ++ I LVGNK DL   
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R V+ EEG Q A+E    F E SA+   N++  F KTA+K+
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 114/184 (61%), Gaps = 15/184 (8%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR--------- 53
           YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F  + V  + +         
Sbjct: 22  YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 81
Query: 54  -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
             + LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ +W+   + +A   N
Sbjct: 82  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 141
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           P+  I+L+GNK DL  +R V++ +  + A + G+ + E SA T QNVE+A       I++
Sbjct: 142 PD--IVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199
Query: 170 NIQE 173
            +++
Sbjct: 200 RMEQ 203

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 100/167 (59%), Gaps = 5/167 (2%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           +FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R V IDG  IK+Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 66  ESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCDL 123
           E FR S+ + YYR     + VYD+T   +F+ L +W+E+ +QH   N +  +LVGNKCDL
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQN---VEEAFIKTAAKI 167
                V  +  ++FA  + +   E SA+   +   VE  F+  A K+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 108/180 (60%), Gaps = 6/180 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V +D R + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+  QE  ++  N+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVELYNE 185

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 108/180 (60%), Gaps = 6/180 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V +D R + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+  QE  ++  N+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVELYNE 185

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 124/219 (56%), Gaps = 21/219 (9%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--------GRP 54
           YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F  + V  D        G+ 
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 55  IK--LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
            K  LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ +W+   + +A   N
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 127
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           P+  I+L+GNK DL  +R V++ +  + A++ G+ + E SA T QNVE++ ++T   ++ 
Sbjct: 128 PD--IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS-VETLLDLIM 184
Query: 170 NIQEGALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGC 208
              E  ++         G     G SG  DG       C
Sbjct: 185 KRMEKCVEKTQVPDTVNG-----GNSGKLDGEKPAEKKC 218

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 109/170 (64%), Gaps = 15/170 (8%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--------GRP 54
           YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F  + V  D        G+ 
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 55  IK--LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
            K  LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ +W+   + +A   N
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 127
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159
           P+  I+L+GNK DL  +R V++ +  + A++ G+ + E SA T QNVE++
Sbjct: 128 PD--IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 107/180 (59%), Gaps = 6/180 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V +D R + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           D  +R+  +K        +N + + E SA+ A NVE+AF   A   L+  QE  ++  N+
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVELYNE 185

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 111/186 (59%), Gaps = 12/186 (6%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------G 52
           YDYL K++ +GD+GVGK+ +L Q+TD +F      T+G++F  + V             G
Sbjct: 8   YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRG 67
Query: 53  RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPN 111
           + I LQ+WDTAG E FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA + N
Sbjct: 68  QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN 127
Query: 112 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
             I+L GNK DL  +RAV +EE  + A++ G+ + E SA    N+  A I+    ++   
Sbjct: 128 PDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA-IEMLLDLIMKR 186
Query: 172 QEGALD 177
            E ++D
Sbjct: 187 MERSVD 192

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 97/167 (58%), Gaps = 5/167 (2%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           +FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R V IDG  IK+Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 66  ESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCDL 123
           E FR S+ + YYR     + VYD T   +F+ L +W+E+ +QH   N +  +LVGNKCDL
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQN---VEEAFIKTAAKI 167
                V  +  ++FA  +     E SA+   +   VE  F   A K+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 94/154 (61%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  ++GDTGVGKS ++ +F    F      TIG  F  + V       K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F S+   YYRG+A A++VYDIT++++F  L  W+++ ++H   N+ + + GNKCDL+  
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           R V  ++ +++A+  G + +E SA+ A N+EE F
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 107/180 (59%), Gaps = 6/180 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V +D R + +QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+  QE  ++  N+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVELYNE 185

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 15/170 (8%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--------GRP 54
           YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F  + V  D        G+ 
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 55  IK--LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
            K  LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ +W    + +A   N
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCEN 127
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159
           P+  I+L+GNK DL  +R V++ +  + A++ G+ + E SA T QNVE++
Sbjct: 128 PD--IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  130 bits (326), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 15/170 (8%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--------GRP 54
           YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F  + V  D        G+ 
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 55  IK--LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
            K  LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ +W    + +A   N
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCEN 127
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159
           P+  I+L+GNK DL  +R V++ +  + A++ G+ + E SA T QNVE++
Sbjct: 128 PD--IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  126 bits (316), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 99/165 (60%)
Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           Y FK +++G+  VGK+ L+L++ + +F   H  T+G  F  + + I G+ + L IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
             R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K ++ GD  VGKS  L++     F+     T+GV+F  + + +DG    LQ+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH- 125
            FRSI +SY+R A G LL+YD+T  ++F ++  W++     A+  + IMLVGNK D+   
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 126 -----RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
                ++ V    GE+ A   G LF E SA+   N+ EA +  A ++
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 98/165 (59%)
Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           Y FK +++G+  VGK+ L+L++ + +F   H  T+   F  + + I G+ + L IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK DL 
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
             R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 98/165 (59%)
Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           Y FK +++G+  VGK+ L+L++ + +F   H  T+   F  + + I G+ + L IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
             R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  120 bits (300), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 107/175 (61%), Gaps = 9/175 (5%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPI-KLQIWDTAG 64
           + K II+GD+GVGK+ L+ ++ + ++   +  TIG +F  + VT+DG  +  +Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN----MSIMLVGNK 120
           QE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++   HAN N       +++GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 121 CDLAH-RRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
            D    ++ VS++  ++ AK  G   LFL  SA+ A NV+ AF + A   LQ  Q
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSALQQNQ 181

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 103/168 (61%), Gaps = 6/168 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +DG  + +QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKC 121
           E FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 122 DLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
           D++ R+ VS EE + + ++NG   + E SA+ A NV  AF +   ++L
Sbjct: 129 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 6/168 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +DG  + +QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKC 121
           E FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++GNK 
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 122 DLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
           D+  R+ VS EE + + K+NG   + E SA+ + NV  AF +   +IL
Sbjct: 131 DIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 103/168 (61%), Gaps = 6/168 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +DG  + +QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKC 121
           E FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 122 DLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
           D++ R+ VS EE + + ++NG   + E SA+ A NV  AF +   ++L
Sbjct: 127 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 6/168 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++GD GVGKS L+ ++   +F      TIGVEF  R + +DGR + LQIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKC 121
           E F+S+   +YRGA   LL + +  R++F +L +W ++   +A+     +   +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 122 DLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
           D    R V+ EE + +  ENG   +LE SA+   NV  AF +   ++L
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 1/164 (0%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++G+  VGKS ++ ++    F   +  TIGV+F  R + ++   ++L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F +IT++YYRGA   +LV+  T RE+F  +SSW E        ++   LV NK DL   
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDD 124
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
             +  EE E  AK   L F   S +   NV E F   A K LQ 
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL  
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V KE+G+  A++ N   FLE+SA++  NV E F     +I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V KE+G+  A++ N   FLE+SA++  NV E F     +I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-PIKLQIWDTAGQ 65
            K +++GD   GK+ L   F  + F   +  TIG++F  R +T+ G   + LQIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCD 122
                +   Y  GA G LLVYDIT  ++F +L  W   ++   + +     + LVGNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           L H R +  E+  +F +ENG      SA+T  +V   F K AA+IL
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 96/179 (53%), Gaps = 12/179 (6%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MS     K + +GD  VGK+C+L+ +T  +F   +  T+   F A  V +DG+ + L +W
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGQIVNLGLW 62
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ N L  W+ + R+ A PN+ I+LVG 
Sbjct: 63  DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGT 121
Query: 120 KCDLA--------HRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
           K DL         H   ++  +GE+  K+ G   ++E S++T QNV+  F      +LQ
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V KE+G+  A++     FLE+SA++  NV E F     +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +R VS EE +  A++  + ++E SA+T  NV++ F     +I
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +R VS EE +  A++  + ++E SA+T  NV++ F     +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V KE+G+  A++     FLE+SA++  NV E F     +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +R VS EE +  A++  + ++E SA+T  NV++ F     +I
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +R VS EE +  A +  + ++E SA+T  NV++ F     +I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 40/202 (19%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP------------ 54
           +K +++G++ VGKS ++L+ T   F    + TIG  F   +V ++               
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 55  -------------------------IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89
                                    IK  IWDTAGQE + SI   YYRGA  A++V+DI+
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 90  RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 149
              T +   +W+   +   + N  I+LV NK D  ++  V   E +++A++N LLF++ S
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 150 ARTAQNVEEAFIKTAAKILQNI 171
           A+T  N++  F   A +I +NI
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNI 206

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPN-MSIMLVGNKCDL 123
           E + +I  +Y+R   G LLV+ IT  E+F   + + E   R  A  + + +++VGNK DL
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
             RR V  EE    A+E G+ ++E SA+T  NV++ F     +I
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPN-MSIMLVGNKCDL 123
           E + +I  +Y+R   G LLV+ IT  E+F   + + E   R  A  + + +++VGNK DL
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
             RR V  EE    A+E G+ ++E SA+T  NV++ F     +I
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +R VS EE +  A++  + ++E SA+T  NV++ F     +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 122
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 123 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 175

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V  ++ +  A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           +   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           +   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 134
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 135 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 187

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           +   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-VEFGARMVTIDGRPIKLQIWDTAGQ 65
           +K  +IGD GVGK+  + +  D RF+  ++ T+G V      +   G  IK  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           E    +   YY GA+GA+L +D+T R T  +L+ W+++ +        I++  NK D+ +
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164
           R+ +SK+   +  K     + E SA+TA N    F+  A
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLA 170

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 96.3 bits (238), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 3/156 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF    F   +D TI   +  + V ID R  +L I DTAGQE F ++   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 79  AAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G LLV+ +T R +F  +  +     R        ++L+GNK DL H+R V++EEG+Q 
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           A++  + ++EASA+   NV++AF     ++++  QE
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAF-HELVRVIRKFQE 171

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++ +D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           +   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MS     K + +GD  VGK+C+L+ +T   F   +  T+   F A +V +DG  + L +W
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLW 59
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ +++  W+ + R +A P + I+LVG 
Sbjct: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGT 118
Query: 120 KCDLAHRR----------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
           K DL   +           ++  +GE+  K  G  +++E S++T QNV+  F      +L
Sbjct: 119 KLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178
Query: 169 Q 169
           Q
Sbjct: 179 Q 179

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 93/165 (56%), Gaps = 10/165 (6%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K  I G  GVGKS L+++F  KRF   +D T+   +     TID   + ++I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED 88
Query: 68  FRSITRS-YYRGAAGALLVYDITRRETFNH---LSSWLEDARQHANPNMSIMLVGNKCDL 123
             +I R  + R   G +LVYDIT R +F     L + L++ ++    N++++LVGNK DL
Sbjct: 89  --TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADL 144
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKI 167
            H R VS EEGE+ A E    F E SA T + N+ E F +   ++
Sbjct: 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 131
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           +   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 132 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 171

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           +   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 126 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 165

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 14/172 (8%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MS     K + +GD  VGK+C+L+ +T   F   +  T+   F A +V +DG  + L +W
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLW 59
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGN 119
           DTAGQE +  +    YRGA   LL + +  + ++ ++   WL + + +A P + I+LVG 
Sbjct: 60  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGT 118
Query: 120 KCDLAHRR----------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
           K DL   +          +++  +GE+  K  G + +LE S++T QNV+  F
Sbjct: 119 KLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +      +  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 134
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 135 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 187

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP- 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V  ++ +  A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  TIGVE        +   IK  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 124
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
           +   K +   F ++  L + + SA++  N E+ F+  A K+  N Q
Sbjct: 125 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 168

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  TIGVE        +   IK  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 123
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
           +   K +   F ++  L + + SA++  N E+ F+  A K+  N Q
Sbjct: 124 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 167

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF    F   +D TI   +  ++ ++DG P +L I DTAGQE F ++   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 79  AAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G LLV+ I  R++FN +   + +  R     +  ++LVGNK DL  +R V + E   F
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 138 AKENGLLFLEASARTAQNVEEAF 160
              + + + EASA+   NV+EAF
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAF 163

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  TIGVE        +   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 131
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
           +   K +   F ++  L + + SA++  N E+ F+  A K+  N Q
Sbjct: 132 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 175

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 66
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 14/181 (7%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MS     K + +GD  VGK+CLL+ +T   F   +  T+   F A +V ++G  + L +W
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLW 61
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ ++S  W+ + + +A P + I+LVG 
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGT 120
Query: 120 KCDLAHRR----------AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL 168
           K DL   +           ++  +GE+  K  G   ++E S+++ +NV+  F      +L
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
Query: 169 Q 169
           Q
Sbjct: 181 Q 181

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 85
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL    
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDE 145
Query: 126 --RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 160
             RR ++K + E    E G           +LE SA+T + V E F
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 69
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL    
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 129
Query: 125 HRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
           H R          V  EEG   A   G   ++E SA+T   V E F       LQ
Sbjct: 130 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 66
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 14/175 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 68
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
             RR ++K        EEG   A   G   ++E SA+T   V E F       LQ
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 14/175 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
             RR ++K        EEG   A   G   ++E SA+T   V E F       LQ
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 140
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 173

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 14/175 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
             RR ++K        EEG   A   G   ++E SA+T   V E F       LQ
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+G   VGK+ L  QF +  F   +D T+   + +++VT+      L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHR 126
           +  +  S+  G  G +LVY +T   +F  + S  +   + H    + ++LVGNK DL+  
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R V   EG++ A+  G  F+E+SAR  Q  +  F K   +I
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 85
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL    
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145
Query: 126 --RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 160
             RR ++K + E    E G           +LE SA+T + V E F
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y     +L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y     +L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 125
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y     +L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y     +L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  ++ + E   R   + ++ ++LVGNKCDL   R V  ++  + 
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHEL 151
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           AK  G+ F+E SA+T Q VE+AF     +I Q
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI  E   + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIE-ESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLA 124
           E +  +    Y      L+ + +    +F+H+ + W  + R H  PN  I+LVG K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 168
             +             ++  +G   AKE G + +LE SA T + ++  F +    +L
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K  I+G   VGKS L +QF + +F   +D TI   F  +++T++G+   LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLS----SWLEDARQHANPNMSIMLVGNKCDL 123
           +    ++Y     G +LVY +T  ++F  +       L+   +   P   IMLVGNK DL
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP---IMLVGNKKDL 123
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
              R +S EEG+  A+     FLE+SA+  Q   + F
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K  I+G   VGKS L +QF + +F   +D TI   F  +++T++G+   LQ+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLA 124
           +    ++Y     G +LVY +T  ++F  +      L D        + IMLVGNK DL 
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 119
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
             R +S EEG+  A+     FLE+SA+  Q   + F
Sbjct: 120 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLA 124
           E +  +    Y      L+ + +    +F+H+ + W  + R H  PN  I+LVG K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 168
             +             ++  +G   AKE G + +LE SA T + ++  F +    +L
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLA 124
           E +  +    Y      L+ + +    +F+H+ + W  + R H  PN  I+LVG K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 89
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
            +             ++  +G   AKE G + +LE SA T + ++  F +    +L+
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D +I   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 139
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 172

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 81
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 140
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K  I+G   VGKS L +QF + +F   +D TI   F  +++T++G+   LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLA 124
           +    ++Y     G +LVY +T  ++F  +      L D        + IMLVGNK DL 
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
             R +S EEG+  A+     FLE+SA+  Q   + F
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 69
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 128
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGN+CDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 131
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           K+ L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
           +       Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 128 AVSKE------------EGEQFAKENGLL-FLEASARTAQNVEEAF 160
             ++E            EG   A   G   ++E SA+T   V E F
Sbjct: 126 HTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D +I   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F    D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DT GQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG+E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DT GQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAF 160
           A+  G+ ++E SA+T Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 63
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K  I+G   VGKS L +QF + +F    D TI   F  +++T++G+   LQ+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLA 124
           +    ++Y     G +LVY +T  ++F  +      L D        + IMLVGNK DL 
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 122
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
             R +S EEG+  A+     FLE+SA+  Q   + F
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 63
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE   ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 125
Query: 126 --RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 160
             RR ++K + E    E G           +LE SA+T + V E F
Sbjct: 126 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T       +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 89
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT--IDGRPIKLQIWDTAGQ 65
           K +++GD G GK+ LL+ F D  F   +  T+   F   MV   + G+P+ L IWDTAGQ
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV---FERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           + +  +   +Y  A+  LL +D+T   +F+++ +       H    + I++VG K DL  
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 126 RRA------------VSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQN 170
            ++            V+   G++ A+  G + +LE SAR   NV   F + A   L +
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF  K F P +D TI   +  +   ID +   L + DTAGQE F ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79  AAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L+VY +T + +F H+  + +   R     +  ++LV NK DL H R V++++G++ 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKENGLLFLEASARTAQ-NVEEAF 160
           A +  + ++E SA+    NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 89
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 124
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+ L++ +T   + P   +    +  + +V++DGRP++LQ+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
           F  +    Y      LL + +    +F ++S  W+ + R H  P   I+LVG + DL   
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139
Query: 124 ---------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       + V +E  +  A+E     ++E SA T +N++E F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  P+  I+LVG K DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 126 RR------------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
            +             ++  +G   A+E G + +LE SA T + ++  F +    +L
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF  K F P +D TI   +  +   ID +   L + DTAGQE F ++   Y R 
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 79  AAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L+VY +T + +F H+  + +   R     +  ++LV NK DL H R V++++G++ 
Sbjct: 85  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 138 AKENGLLFLEASARTAQ-NVEEAF 160
           A +  + ++E SA+    NV++ F
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTF 168

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  P+  I+LVG K DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 126 RR------------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
            +             ++  +G   A+E G + +LE SA T + ++  F +    +L
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDL   R V  ++ +  
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDL 151
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  P+  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAF 160
            +             ++  +G   A+E G + +LE SA T + ++  F
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +DG+ ++L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGLED 68
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
             RR ++K        EEG   A   G   ++E SA+T   V E F       LQ
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +D +P+ L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 68
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    ++ ++ + W  + R H  P+  I+LVG K DL  
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 127
Query: 126 RR------------AVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
            +             ++  +G   AKE + + +LE SA T + ++  F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +D +P+ L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 69
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    ++ ++ + W  + R H  P+  I+LVG K DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 128
Query: 126 RR------------AVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
            +             ++  +G   AKE + + +LE SA T + ++  F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F    D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNK DLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRR-------ETF-------------NHLSSWLEDARQ 106
            +  +    Y    G     DIT R       + F             N  + W  + R 
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 107 HANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTA 153
           H  PN  I+LVG K DL   +             ++  +G   AKE G + +LE SA T 
Sbjct: 125 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 154 QNVEEAF 160
           + ++  F
Sbjct: 184 RGLKTVF 190

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD   GK+CLL+ F+   F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
           +  +    Y      L+ + +   ++  ++   W+ + + H  PN+ I+LV NK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 124 AHRR---------AVSKEEGEQFA-KENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            H R          V  ++G   A +     +LE SA+T + V E F       LQ 
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNK DL   R V  ++ +  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDL 134
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNK DL   R V  ++ +  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDL 134
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +D +P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    ++ ++ + W  + R H  P+  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
            +             ++  +G   AKE + + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTA QE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNK DLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTA QE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNK DLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L++ +++GD GVGK+ L   F  K+ + +H+  +G +   R +T+DG    L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 66  ESF-RSITR-SYYRGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCD 122
           E   +S ++ S  +G +  ++VY I  R +F   S   ++  R H   ++ I+LVGNK D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           LA  R VS EEG   A      F+E SA    NV E F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF  K F   +D TI   +  +   ID +   L + DTAGQE F ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79  AAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L+VY +T + +F H+  + +   R     +  ++LV NK DL H R V++++G++ 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKENGLLFLEASARTAQ-NVEEAF 160
           A +  + ++E SA+    NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF  K F   +D TI   +  +   ID +   L + DTAGQE F ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYR-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79  AAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L+VY +T + +F H+  + +   R     +  ++LV NK DL H R V++++G++ 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKENGLLFLEASARTAQ-NVEEAF 160
           A +  + ++E SA+    NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           ++  + G  GVGKS L+L+F    F+  +  T+   +  ++++ D     LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLA 124
            F ++ R         +LVY IT R++   L    E   +      ++ IMLVGNKCD +
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
             R V   E E  A+     F+E SA+   NV+E F
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 9/175 (5%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTIDGRPIKLQIW--DTA 63
           K  ++G+  VGKS L+  FT K  +F   + +T GVE     VTI    + ++++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE---DARQHANPNMSIMLVGNK 120
           G + ++     Y+ G   A+LV+D++  E+F    +W E    AR      +  +LV NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 121 CDL-AHRRAVSKEEGEQFAKENGLLFLEASARTA-QNVEEAFIKTAAKILQNIQE 173
            DL   R  V  +  + +A  N L F + SA    ++ +  F+  A    +N ++
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 4/167 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLLL F+       +  T+   F + ++        L +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +  +    Y  +   LL + +  R +F+++S+  E   +H       +LVG K DL   
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 141
Query: 127 RA--VSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQN 170
            +  V+K+EG+   ++ G + ++EAS+     + E F K+   I  N
Sbjct: 142 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 188

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 4/167 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLLL F+       +  T+   F + ++        L +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +  +    Y  +   LL + +  R +F+++S+  E   +H       +LVG K DL   
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142
Query: 127 RA--VSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQN 170
            +  V+K+EG+   ++ G + ++EAS+     + E F K+   I  N
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           + K +++GD  VGK+CLL+ + +  F   +  T+   + A  VT+ G+   L ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQ 76
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL- 123
           E +  +    Y      L+ + +    +F ++   W+ + +++A PN+  +L+G + DL 
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 124 -----------AHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
                         + +  E+G++ AKE G   ++E SA T + ++  F +    IL
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF    F   +D TI  +F  + + +D  P  L+I DTAG E F S+   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 79  AAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G +LVY +  +++F  +    +   R      + ++LVGNK DL   R VS  EG   
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 138 AKENGLLFLEASARTAQNVEEAF 160
           A+E G  F+E SA++   V+E F
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELF 157

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  V +DGR ++L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVELALWDTAGQED 70
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH- 125
           +  +    Y  +   L+ + I   ++  ++   W+ +   H    + I+LVG K DL + 
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRND 129
Query: 126 -----------RRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
                      ++ V+ +EG+  A + G   + E SA+T   V E F
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70
           I+G  G GKS L ++F  KRF   +D  +   + +   T+D +P+ L++ DTA  ++ R+
Sbjct: 26  ILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTPRN 84
Query: 71  ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP---NMSIMLVGNKCDLAHRR 127
             R Y   A   L+VY +  R++F+  SS+LE    HA     ++  +L+GNK D+A  R
Sbjct: 85  CER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYR 143
Query: 128 AVSKEEGEQFAKENGLLFLEASA 150
            V+K EG   A   G LF E SA
Sbjct: 144 QVTKAEGVALAGRFGCLFFEVSA 166

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 131
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 123
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVXIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 69
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 69
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 122
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 123
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F P   +    +  A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 88
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---- 123
           + ++    Y  +   L+ +DI+R ET + +    +   Q   PN  ++LVG K DL    
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148
Query: 124 -------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 155
                   HR+  VS ++G   AK+ G   ++E SA  ++N
Sbjct: 149 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 67
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---- 123
           + ++    Y  +   L+ +DI+R ET + +    +   Q   PN  ++LVG K DL    
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 124 -------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 155
                   HR+  VS ++G   AK+ G   ++E SA  ++N
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 83
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---- 123
           + ++    Y  +   L+ +DI+R ET + +    +   Q   PN  ++LVG K DL    
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 143
Query: 124 -------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 155
                   HR+  VS ++G   AK+ G   ++E SA  ++N
Sbjct: 144 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLRDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +    +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGLE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD   GK+ +L       +   +  T+   + A + T + R ++L +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 70
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD---- 122
           + ++    Y  +   LL +DI+R ET +  L  W  +   +  P+  ++L+G K D    
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 129
Query: 123 ------LAHRR--AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN 170
                 L+H++   +S E+G   AK+ G  ++LE SA T++    +  +TA+ +  N
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 186

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD   GK+ +L       +   +  T+   + A + T + R ++L +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 87
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD---- 122
           + ++    Y  +   LL +DI+R ET +  L  W  +   +  P+  ++L+G K D    
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 146
Query: 123 ------LAHRR--AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN 170
                 L+H++   +S E+G   AK+ G  ++LE SA T++    +  +TA+ +  N
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGLE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD   GK+ +L       +   +  T+   + A + T + R ++L +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 71
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD---- 122
           + ++    Y  +   LL +DI+R ET +  L  W  +   +  P+  ++L+G K D    
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 130
Query: 123 ------LAHRR--AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN 170
                 L+H++   +S E+G   AK+ G  ++LE SA T++    +  +TA+ +  N
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 187

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D +FK +++G++GVGKS L   F   +    H+     +   R + +D   + L ++D  
Sbjct: 21  DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 64  GQESFRSITRSYYRGAAGA-LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKC 121
            Q       R +      A L+V+ +T R +F+ +   L   R    + ++ ++LVGNK 
Sbjct: 81  EQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           DLA  R VS EEG   A       +E SA    N  E F
Sbjct: 141 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D +FK +++G++GVGKS L   F   +    H++    +   R + +D   + L ++D  
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 64  GQESFRSITRSYYRGAAGA-LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKC 121
            Q       + +      A L+V+ +T R +F+ +   L   R    + ++ ++LVGNK 
Sbjct: 70  EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 129
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           DLA  R VS EEG   A       +E SA    N  E F
Sbjct: 130 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 24/172 (13%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRP 54
           M+Y   ++ ++IG+ GVGKS L        F  VHD        +G +   R + +DG  
Sbjct: 4   MTY---YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDXEVLGEDTYERTLMVDGES 55
Query: 55  ---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHA 108
              I L +W+  G+  +  +     +     L+VY IT R +F   S     L  ARQ  
Sbjct: 56  ATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-- 111
Query: 109 NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
             ++ I+LVGNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 112 TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 24/172 (13%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRP 54
           M+Y   ++ ++IG+ GVGKS L        F  VHD        +G +   R + +DG  
Sbjct: 4   MTY---YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDXEVLGEDTYERTLMVDGES 55
Query: 55  ---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHA 108
              I L +W+  G+  +  +     +     L+VY IT R +F   S     L  ARQ  
Sbjct: 56  ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-- 111
Query: 109 NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
             ++ I+LVGNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 112 TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           +FK +++G++GVGKS L   F   +    H++    +   R + +D   + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 66  ESFRSITRSYYRGAAGA-LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDL 123
                  + +      A L+V+ +T R +F+ +   L   R    + ++ ++LVGNK DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           A  R VS EEG   A       +E SA    N  E F
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRP---IKL 57
           ++ ++IG+ GVGKS L        F  VHD        +G +   R + +DG     I L
Sbjct: 38  YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSI 114
            +W+  G+  +  +     +     L+VY IT R +F   S     L  ARQ    ++ I
Sbjct: 93  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPI 148
Query: 115 MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           +LVGNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRP---IKL 57
           ++ ++IG+ GVGKS L        F  VHD        +G +   R + +DG     I L
Sbjct: 7   YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSI 114
            +W+  G+  +  +     +     L+VY IT R +F   S     L  ARQ    ++ I
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPI 117
Query: 115 MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           +LVGNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 118 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L+L+F    F+  +  TI   +  ++++ D     LQI DT G   F ++ R     
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 79  AAGALLVYDITRRETFNHLSSWLEDARQH--ANPNMSIMLVGNKCDLAHRRAVSKEEGEQ 136
               +LV+ +T +++   L    +   Q   +  ++ +MLVGNKCD   +R V   E + 
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 137 FAKENGLLFLEASARTAQNVEEAF 160
            A+E    F+E SA+   NV+E F
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELF 162

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 7/163 (4%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MS + ++K +++G  GVGKS L   F      P  +   G  +  R + +DG    L ++
Sbjct: 2   MSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVY 59
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLV 117
           D   Q+  R +           ++VY +T + +F   + L   L  ARQ    ++ I+LV
Sbjct: 60  DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILV 117
Query: 118 GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           GNK DL   R VS +EG   A      F+E SA    NV+  F
Sbjct: 118 GNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 7/163 (4%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           +S + ++K +++G  GVGKS L   F      P  +   G  +  R + +DG    L ++
Sbjct: 2   VSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVY 59
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLV 117
           D   Q+  R +           ++VY +T + +F   + L   L  ARQ    ++ I+LV
Sbjct: 60  DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILV 117
Query: 118 GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           GNK DL   R VS +EG   A      F+E SA    NV+  F
Sbjct: 118 GNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           ++K +++G  GVGKS L   F      P  +   G  +  R + +DG    L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCD 122
           +  R +           ++VY +T + +F   + L   L  ARQ    ++ I+LVGNK D
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSD 117
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L   R VS +EG   A      F+E SA    NV+  F
Sbjct: 118 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++ R  KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
           S RS  R+Y+    G + V D   R+        L S L + R       ++++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 130
Query: 123 L 123
           L
Sbjct: 131 L 131

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++ R  KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
           S RS  R+Y+    G + V D   R+        L S L + R       ++++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 130
Query: 123 L 123
           L
Sbjct: 131 L 131

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++ R  KL IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGEDID-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 71
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
           S RS  R+Y+    G + V D   R+        L S L + R       ++++  NK D
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 128
Query: 123 L 123
           L
Sbjct: 129 L 129

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 8   KYIIIGDTGVGKSCLLLQF--TDKRFQPVHDLTIGVEFGARMVTIDG---RPIKLQIWDT 62
           K  I+G+TG GK+ LL Q   T K        T+G++     + I     R + L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           AG+E F S    +    A  L VYD+++ +   +    WL + +  A+ +  ++LVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 122 DLAHRR 127
           D++  +
Sbjct: 121 DVSDEK 126

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 8   KYIIIGDTGVGKSCLLLQF--TDKRFQPVHDLTIGVEFGARMVTIDG---RPIKLQIWDT 62
           K  I+G+TG GK+ LL Q   T K        T+G++     + I     R + L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           AG+E F S    +    A  L VYD+++ +   +    WL + +  A+ +  ++LVG   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 122 DLAHRR 127
           D++  +
Sbjct: 123 DVSDEK 128

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +I+G  G GK+ +L      R Q    +T     G  + T+  + +KL +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILY-----RLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQT 73
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 122
           S R   R YY   A  + V D T ++  +  S  L    Q      + +LV  NK D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           + + +++G    GK+ +L +F  +        TI    G  + T++ R  KL IWD  G 
Sbjct: 1   MLRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGL 55
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKC 121
           +S RS  R+Y+    G + V D   R+        L S L + R       ++++  NK 
Sbjct: 56  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQ 112
Query: 122 DL 123
           DL
Sbjct: 113 DL 114

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 18  GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR 77
           GK+ +L +F  +        TI    G  + T++ R  KL IWD  GQ+S RS  R+Y+ 
Sbjct: 30  GKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 78  GAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCDL 123
              G + V D   R+        L S L + R       ++++  NK DL
Sbjct: 85  STDGLIWVVDSADRQRXQDCQRELQSLLVEERL---AGATLLIFANKQDL 131

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K II+G    GK+ +L QF+    + VH        G+ +  I     +  +WD  GQES
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMN--EVVHT---SPTIGSNVEEIVINNTRFLMWDIGGQES 77
Query: 68  FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
            RS   +YY      ++V D        +TR E +  L+   ED R+       +++  N
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFAN 130
Query: 120 KCDLAHRRAVSKEEGEQFAK 139
           K D+  +  ++  E  QF K
Sbjct: 131 KQDV--KECMTVAEISQFLK 148

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K II+G    GK+ +L QF+    + VH        G+ +  I     +  +WD  GQES
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMN--EVVHT---SPTIGSNVEEIVINNTRFLMWDIGGQES 72
Query: 68  FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
            RS   +YY      ++V D        +TR E +  L+   ED R+       +++  N
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFAN 125
Query: 120 KCDLAHRRAVSKEEGEQFAK 139
           K D+  +  ++  E  QF K
Sbjct: 126 KQDV--KECMTVAEISQFLK 143

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K II+G    GK+ +L QF+    + VH        G+ +  I     +  +WD  GQES
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMN--EVVHT---SPTIGSNVEEIVINNTRFLMWDIGGQES 72
Query: 68  FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
            RS   +YY      ++V D        +TR E +  L+   ED R+       +++  N
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFAN 125
Query: 120 KCDLAHRRAVSKEEGEQFAK 139
           K D+  +  ++  E  QF K
Sbjct: 126 KQDV--KECMTVAEISQFLK 143

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 35  HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
            D+   V F  R VT     IK  IWD  GQ  FRS+   Y RG    + + D   RE  
Sbjct: 49  EDMIPTVGFNMRKVTKGNVTIK--IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKI 106
Query: 95  ----NHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
               N L + L+  +    P   ++++GNK DL +
Sbjct: 107 EASRNELHNLLDKPQLQGIP---VLVLGNKRDLPN 138

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K II+G    GK+ +L QF+    + VH        G+ +  I     +  +WD  GQES
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMN--EVVHT---SPTIGSNVEEIVINNTRFLMWDIGGQES 78
Query: 68  FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
            RS   +YY      ++V D        +TR E +  L+   ED R+       +++  N
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFAN 131
Query: 120 KCDLAHRRAVSKEEGEQFAK 139
           K D+  +  ++  E  QF K
Sbjct: 132 KQDV--KECMTVAEISQFLK 149

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K II+G    GK+ +L QF     + VH        G+ +  I  +     +WD  GQES
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMN--EVVHT---SPTIGSNVEEIVVKNTHFLMWDIGGQES 72
Query: 68  FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
            RS   +YY      +LV D        IT+ E +  L+   ED R+ A     +++  N
Sbjct: 73  LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAH--EDLRKAA-----VLIFAN 125
Query: 120 KCDL 123
           K D+
Sbjct: 126 KQDM 129

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +           +T     G  + T++ + I   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNICFTVWDVGGQD 84
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + R Y++   G + V D   RE     +  L+   Q      +++LV  NK D+ +
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 126 RRAVSK 131
              VS+
Sbjct: 145 AMPVSE 150

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 35  HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
            D+   V F  R +T     IKL  WD  GQ  FRS+   Y RG +  + + D   +E  
Sbjct: 49  EDMIPTVGFNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 106
Query: 95  ----NHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
               N L + L+  +    P   ++++GNK DL 
Sbjct: 107 EASKNELHNLLDKPQLQGIP---VLVLGNKRDLP 137

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 7  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           + +++G  G GK+ +L      + +    +T     G  + T+  + I   +WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLY-----KLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
            RS+ R YYR   G + V D   R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDR 97

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 7  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           + +++G  G GK+ +L      + +    +T     G  + T+  + I   +WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLY-----KLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
            RS+ R YYR   G + V D   R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDR 97

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V   T     G  + T+  + +K  +WD  GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 377
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
             R + R YY G  G + V D   R+        +++ARQ  +  ++        I++  
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 430
Query: 119 NKCDLA 124
           NK DL 
Sbjct: 431 NKQDLP 436

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 7  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           + +++G  G GK+ +L +    +   V  +T     G  + T+  + I   +WD  GQ+
Sbjct: 1  MRILMVGLDGAGKTTVLYKL---KLGEV--ITTIPTIGFNVETVQYKNISFTVWDVGGQD 55
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
            RS+ R YYR   G + V D   R
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDR 80

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +I+G  G GK+ +L      R Q    +T     G  + T+  + +K Q+WD  GQ 
Sbjct: 3   MRILILGLDGAGKTTILY-----RLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQT 57
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
           S R   R YY      + V D   R+      S L    +      +I++V  NK D+  
Sbjct: 58  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 117

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 35  HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
            D+   V F  R +T     IKL  WD  GQ  FRS+   Y RG +  + + D   +E  
Sbjct: 58  EDMIPTVGFNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 115
Query: 95  ----NHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
               N L + L+  +    P   ++++GNK DL 
Sbjct: 116 EASKNELHNLLDKPQLQGIP---VLVLGNKRDLP 146

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V   T     G  + T+  + +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 67
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
             R + R YY G  G + V D   R+        +++ARQ  +  ++        I++  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 120
Query: 119 NKCDLA 124
           NK DL 
Sbjct: 121 NKQDLP 126

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V   T     G  + T+  + +K  +WD  GQ+
Sbjct: 14  MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 68
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
             R + R YY G  G + V D   R+        +++ARQ  +  ++        I++  
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 121
Query: 119 NKCDLA 124
           NK DL 
Sbjct: 122 NKQDLP 127

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V   T     G  + T+  + +K  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 55
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
             R + R YY G  G + V D   R+        +++ARQ  +  ++        I++  
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 108
Query: 119 NKCDLA 124
           NK DL 
Sbjct: 109 NKQDLP 114

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V   T     G  + T+  + +K  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 55
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
             R + R YY G  G + V D   R+        +++ARQ  +  ++        I++  
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 108
Query: 119 NKCDLA 124
           NK DL 
Sbjct: 109 NKQDLP 114

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 44  GARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED 103
           G  + T++ R I   +WD  GQ+  R + R YY    G + V D   RE        ++D
Sbjct: 50  GFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRER-------IDD 102
Query: 104 ARQHANPNMS--------IMLVGNKCDLAH 125
           AR+  +  ++        I++  NK DL +
Sbjct: 103 AREELHRMINEEELKDAIILVFANKQDLPN 132

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 44  GARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED 103
           G  + T+  + +K  +WD  GQ+  R + R YY G  G + V D   R+        +++
Sbjct: 33  GFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDE 85
Query: 104 ARQHANPNMS--------IMLVGNKCDLA 124
           ARQ  +  ++        I++  NK DL 
Sbjct: 86  ARQELHRIINDREXRDAIILIFANKQDLP 114

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +           +T     G  + T++ + I   +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 220
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + R Y++   G + V D   RE  N     L           +++LV  NK DL +
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L      + +    +T     G  + T++ + I   +WD  GQ+
Sbjct: 17  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 71
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + R Y++   G + V D   RE  N     L           +++LV  NK DL +
Sbjct: 72  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 131

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L      + +    +T     G  + T++ + I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + R Y++   G + V D   RE  N     L           +++LV  NK DL +
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 132

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +           +T     G  + T++ + I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 55
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + R Y++   G + V D   RE  N     L           +++LV  NK DL +
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 6/126 (4%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +           +T     G  + T++ + I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + R YY+     + V D   R+        L           +I+LV  NK DL  
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 126 RRAVSK 131
             ++S+
Sbjct: 133 AMSISE 138

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L      + +    +T     G  + T++ + I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQD 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + + Y++   G + V D   RE    ++  L+          +++L+  NK DL +
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPN 132
Query: 126 RRAVSK 131
             A+S+
Sbjct: 133 AMAISE 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-123
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-123
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-122
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-120
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-120
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-119
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-118
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-118
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-117
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-116
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-116
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-115
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-113
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-113
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-113
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-113
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-113
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-113
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-113
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-112
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-112
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-112
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-111
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-111
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-111
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-111
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-111
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-110
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-109
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-109
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-109
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-108
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-108
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-108
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-107
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-107
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-106
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-106
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-106
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-105
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-101
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-101
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	5e-97
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-89
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-88
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-88
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-86
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	5e-86
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-84
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-84
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	8e-84
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-83
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	4e-82
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-80
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-79
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	6e-79
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-78
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	9e-78
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	4e-77
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-76
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	5e-76
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-75
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-75
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	9e-75
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-73
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	9e-73
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	6e-72
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-65
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	5e-63
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-61
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-52
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	5e-50
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-47
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	8e-47
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-45
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	7e-45
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-43
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-42
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-42
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-42
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-41
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-41
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-40
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-39
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-27
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-21
3llu_A	196	RAS-related GTP-binding protein C; structural geno	6e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-15
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	5e-12
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	7e-12
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	8e-12
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-11
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-11
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-11
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-11
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	3e-11
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	7e-11
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	8e-11
2ged_A	193	SR-beta, signal recognition particle receptor beta	4e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	6e-10
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	7e-10
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-09
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	2e-09
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	3e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-08
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-07
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	1e-04

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  344 bits (884), Expect = e-123
 Identities = 105/176 (59%), Positives = 137/176 (77%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YD+LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG++++ + G+ +KLQIWD
Sbjct: 6   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK 
Sbjct: 66  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
           DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF++ A KIL  I+ G LD
Sbjct: 126 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  344 bits (885), Expect = e-123
 Identities = 140/175 (80%), Positives = 154/175 (88%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
              YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV IDG+ IKLQIWD
Sbjct: 17  RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWD 76

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH++ NM IML+GNK 
Sbjct: 77  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 136

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176
           DL  RR V +EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQ+G  
Sbjct: 137 DLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 191

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  342 bits (880), Expect = e-122
 Identities = 105/177 (59%), Positives = 133/177 (75%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           +  D+LFK+++IG  G GKSCLL QF + +F+   + TIGVEFG+R+V + G+ +KLQIW
Sbjct: 20  IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 79

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+PN+ ++L GNK
Sbjct: 80  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNK 139

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
            DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF+K A  IL  I  G LD
Sbjct: 140 KDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  340 bits (873), Expect = e-120
 Identities = 94/215 (43%), Positives = 132/215 (61%), Gaps = 9/215 (4%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD LFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + I+G+ IK QIWDT
Sbjct: 10  YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R+IT +YYRGA GAL+VYDI++  ++ + + WL + R++A+ N+++ L+GNK D
Sbjct: 70  AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDS 182
           LAH RAV  EE + FA+EN LLF E SA  ++NV++AF +    I Q + +  +D   DS
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDL-GDS 188

Query: 183 GIKVGYGRGQGPSGAR--------DGTVSQRGGCC 209
                      P+G          +   +    CC
Sbjct: 189 SANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  337 bits (867), Expect = e-120
 Identities = 115/169 (68%), Positives = 138/169 (81%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWD
Sbjct: 11  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK 
Sbjct: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 130

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           DL  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QN
Sbjct: 131 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  336 bits (863), Expect = e-119
 Identities = 89/208 (42%), Positives = 135/208 (64%), Gaps = 6/208 (2%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            YDYLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + V +DG+ +KLQIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKC
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           DL  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I +++ +  L+    
Sbjct: 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQ 183

Query: 182 SGIKVGYGRGQGPSGARDGTVSQRGGCC 209
                     +G    +  +++  GGCC
Sbjct: 184 K------KEDKGNVNLKGQSLTNTGGCC 205

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  334 bits (858), Expect = e-118
 Identities = 92/185 (49%), Positives = 119/185 (64%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDS 182
           L H RAV  +E   FA++N L F+E SA  + NVEEAF     +I + + +  +      
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 181

Query: 183 GIKVG 187
               G
Sbjct: 182 DESPG 186

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  331 bits (852), Expect = e-118
 Identities = 91/185 (49%), Positives = 131/185 (70%), Gaps = 1/185 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWD
Sbjct: 12  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 71

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKC
Sbjct: 72  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 131

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           DL  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I + +  GA     +
Sbjct: 132 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAE 191

Query: 182 -SGIK 185
            S +K
Sbjct: 192 KSNVK 196

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  329 bits (847), Expect = e-117
 Identities = 80/172 (46%), Positives = 110/172 (63%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            Y+++FK ++IG++GVGK+ LL +FT   F      TIGVEF  R V +    +K QIWD
Sbjct: 21  DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 80

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   HA   + +MLVGNK 
Sbjct: 81  TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKS 140

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           DL+  R V  EE   FA+ NGLLFLE SA  + NVE AF     +I   + +
Sbjct: 141 DLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  328 bits (843), Expect = e-116
 Identities = 90/166 (54%), Positives = 114/166 (68%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWD
Sbjct: 25  EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK 
Sbjct: 85  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 144

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           DL H RAV  +E   FA++NGL F+E SA  + NVE AF     +I
Sbjct: 145 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  328 bits (843), Expect = e-116
 Identities = 82/177 (46%), Positives = 117/177 (66%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            YD+LFK ++IG+ GVGK+CL+ +FT   F P    TIGV+F  + V I+G  +KLQIWD
Sbjct: 22  DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 81

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+A+  +  +LVGNK 
Sbjct: 82  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 141

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 178
           DLA RR VS++  E+F++   + +LE SA+ + NVE+ F+  A +++   ++  L  
Sbjct: 142 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVN 198

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  325 bits (836), Expect = e-115
 Identities = 76/195 (38%), Positives = 112/195 (57%), Gaps = 1/195 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            +DY+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +  + + IKLQIWD
Sbjct: 4   MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAG E +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKC
Sbjct: 64  TAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 123

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           D+   R VS E G Q A   G  F EASA+   NV++ F +    I + + E    A   
Sbjct: 124 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPA 183

Query: 182 -SGIKVGYGRGQGPS 195
            +G K G       +
Sbjct: 184 VTGAKQGPQLTDQQA 198

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  321 bits (824), Expect = e-113
 Identities = 82/177 (46%), Positives = 122/177 (68%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YDYLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R + +DG+ IKLQIWD
Sbjct: 4   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKC
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 178
           D+  +R VSKE GE+ A + G+ F+E SA+   NVE AF   A  I   + +     
Sbjct: 124 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKAT 180

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  321 bits (825), Expect = e-113
 Identities = 70/172 (40%), Positives = 108/172 (62%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           ++DY+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + V    + +KLQIWD
Sbjct: 19  NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKC
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           D+   R V  E+G+  A++ G  F EASA+   +V +AF +    I   + +
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  321 bits (824), Expect = e-113
 Identities = 87/195 (44%), Positives = 122/195 (62%), Gaps = 2/195 (1%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           SYD + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQ+WD
Sbjct: 16  SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++LVGNK 
Sbjct: 76  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 135

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAV-N 180
           D+   R V+ ++GE  AKE G+ F+E+SA+   NV E F   A  I + I    L  V N
Sbjct: 136 DM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGN 194

Query: 181 DSGIKVGYGRGQGPS 195
                +    G G S
Sbjct: 195 GKEGNISINSGSGNS 209

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  320 bits (822), Expect = e-113
 Identities = 87/170 (51%), Positives = 125/170 (73%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWD
Sbjct: 29  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 88

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKC
Sbjct: 89  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 148

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
           DL  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I + +
Sbjct: 149 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 198

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  320 bits (822), Expect = e-113
 Identities = 77/174 (44%), Positives = 114/174 (65%), Gaps = 1/174 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            YD+LFK +++GD  VGK+C++ +F    F      TIGV+F  + + I G+ +KLQIWD
Sbjct: 25  QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWD 84

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT+SYYR A GA+L YDIT+R +F  +  W+ED R++A  N+  +L+GNK 
Sbjct: 85  TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS 144

Query: 122 DLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQEG 174
           DL+  R VS  E +  A+   +L  +E SA+ + NVEEAF++ A +++      
Sbjct: 145 DLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGP 198

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  319 bits (820), Expect = e-113
 Identities = 76/173 (43%), Positives = 121/173 (69%), Gaps = 1/173 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIW 60
            YD  FK +++GD+GVGK+CLL++F D  F     + T+G++F  +++ +DG  +KLQ+W
Sbjct: 6   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++++ML+GNK
Sbjct: 66  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 125

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
            D AH R V +E+GE+ AKE GL F+E SA+T  NV+ AF   A ++ +   +
Sbjct: 126 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  319 bits (819), Expect = e-113
 Identities = 79/173 (45%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            YD+LFK +IIGD+GVGKS LLL+F D  F   +  TIGV+F  R V I+G  +KLQIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL +  Q+   ++  +LVGNK 
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKN 123

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
           D   R+ V  E+  +FA + G+   E SA+   NVEE F      +L+  ++ 
Sbjct: 124 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  318 bits (818), Expect = e-112
 Identities = 71/172 (41%), Positives = 105/172 (61%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
             DY+FK ++IG++ VGK+  L ++ D  F P    T+G++F  + V    + IKLQIWD
Sbjct: 18  GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWD 77

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE +R+IT +YYRGA G LL+YDI  +E+F  +  W    + ++  N  ++LVGNKC
Sbjct: 78  TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKC 137

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           DL   R V  E+G + A + G  F EASA+   NV++ F +    I + + E
Sbjct: 138 DLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  318 bits (817), Expect = e-112
 Identities = 66/197 (33%), Positives = 114/197 (57%), Gaps = 11/197 (5%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP------- 54
            YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F  + V  + +        
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80

Query: 55  ---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP- 110
              + LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ +W+   + +A   
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140

Query: 111 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           N  I+L+GNK DL  +R V++ +  + A + G+ + E SA T QNVE+A       I++ 
Sbjct: 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200

Query: 171 IQEGALDAVNDSGIKVG 187
           +++          +  G
Sbjct: 201 MEQCVEKTQIPDTVNGG 217

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  317 bits (814), Expect = e-112
 Identities = 76/171 (44%), Positives = 114/171 (66%), Gaps = 1/171 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
             D+  + IIIG  GVGK+ L+ +FTD  F      T+GV+F  + V + G+ I+LQIWD
Sbjct: 22  PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWD 81

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE F SIT +YYR A G +LVYDIT++ETF+ L  W++   ++A+ +  ++LVGNK 
Sbjct: 82  TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 141

Query: 122 DLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
           D    R +++++GE+FA++  G+ F EASA+   NV+E F+K    IL+ +
Sbjct: 142 DCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  316 bits (811), Expect = e-111
 Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 3/187 (1%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
                 K +IIG++GVGKS LLL+FTD  F P    TIGV+F  + +++DG   KL IWD
Sbjct: 11  DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWD 70

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNK 120
           TAGQE FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   +   N +  MLVGNK
Sbjct: 71  TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNK 130

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            D    R V + EG +FA+++ +LF+EASA+T   V+ AF +   KI+Q       +   
Sbjct: 131 IDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN-Q 188

Query: 181 DSGIKVG 187
           +SG   G
Sbjct: 189 NSGPSSG 195

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  315 bits (809), Expect = e-111
 Identities = 66/172 (38%), Positives = 106/172 (61%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +     K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWD
Sbjct: 8   NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWD 67

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE + S+   YYRGAA A++V+D+T + +F     W+++ +   NPNM + L GNK 
Sbjct: 68  TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 127

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           DL   R V+ E+ + +A+ENGL F+E SA+TA NV+E F + A ++ +    
Sbjct: 128 DLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPT 179

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  313 bits (805), Expect = e-111
 Identities = 59/168 (35%), Positives = 100/168 (59%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           S  Y FK +++G+  VGK+ L+L++ + +F   H  T+G  F  + + I G+ + L IWD
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK 
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           DL   R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  314 bits (807), Expect = e-111
 Identities = 66/188 (35%), Positives = 109/188 (57%), Gaps = 11/188 (5%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID---------- 51
            YDYL K++ +GD+GVGK+ +L Q+TD +F      T+G++F  + V             
Sbjct: 7   DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGR 66

Query: 52  GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NP 110
           G+ I LQ+WDTAG E FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA + 
Sbjct: 67  GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126

Query: 111 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           N  I+L GNK DL  +RAV +EE  + A++ G+ + E SA    N+  A       I++ 
Sbjct: 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKR 186

Query: 171 IQEGALDA 178
           ++     +
Sbjct: 187 MERSVDKS 194

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  313 bits (804), Expect = e-111
 Identities = 81/170 (47%), Positives = 113/170 (66%), Gaps = 1/170 (0%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++LVGNK D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
              R V+ ++GE  AKE G+ F+E+SA+   NV E F   A  I + I  
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  312 bits (801), Expect = e-110
 Identities = 71/174 (40%), Positives = 102/174 (58%), Gaps = 5/174 (2%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           S   +FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R V IDG  IK+Q+WD
Sbjct: 16  SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75

Query: 62  TAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGN 119
           TAGQE FR S+ + YYR     + VYD+T   +F+ L +W+E+ +QH   N +  +LVGN
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN 135

Query: 120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA---QNVEEAFIKTAAKILQN 170
           KCDL     V  +  ++FA  + +   E SA+      +VE  F+  A K+  +
Sbjct: 136 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  310 bits (796), Expect = e-109
 Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 9/191 (4%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTIDGRPIKLQ 58
           ++     K  ++G+  VGKS L+  FT K  +F   + +T GVE     VTI    + ++
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74

Query: 59  IW--DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HANPNMS 113
           ++  DTAG + ++     Y+ G   A+LV+D++  E+F    +W E  +         + 
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134

Query: 114 IMLVGNKCDLAH-RRAVSKEEGEQFAKENGLLFLEASAR-TAQNVEEAFIKTAAKILQNI 171
            +LV NK DL   R  V  +  + +A  N L F + SA    ++ +  F+  A    +N 
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194

Query: 172 QEGALDAVNDS 182
           ++      +  
Sbjct: 195 EDKVAAFQDAC 205

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  308 bits (792), Expect = e-109
 Identities = 72/169 (42%), Positives = 111/169 (65%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +    FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           DLA++RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  310 bits (795), Expect = e-109
 Identities = 74/208 (35%), Positives = 115/208 (55%), Gaps = 9/208 (4%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +    FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R ++LQ+WD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAG E FRS+  SY R +  A++VYDIT   +F   + W++D R     ++ IMLVGNK 
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           DLA +R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +            + 
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 191

Query: 182 SGIKVGYGRGQGPSGARDGTVSQRGGCC 209
             IK+   + Q  S          GGC 
Sbjct: 192 IDIKLEKPQEQPVSE---------GGCL 210

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  308 bits (792), Expect = e-108
 Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 6/175 (3%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
            S    +K ++ GD  VGKS  L++     F+     T+GV+F  + + +DG    LQ+W
Sbjct: 23  FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQE FRSI +SY+R A G LL+YD+T  ++F ++  W++     A+  + IMLVGNK
Sbjct: 83  DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNK 142

Query: 121 CDLAH------RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            D+        ++ V    GE+ A   G LF E SA+   N+ EA +  A ++ +
Sbjct: 143 ADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  307 bits (789), Expect = e-108
 Identities = 74/215 (34%), Positives = 111/215 (51%), Gaps = 15/215 (6%)

Query: 1   MS--YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQ 58
           M+     L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V +D R + +Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 59  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSI 114
           IWDTAGQE F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 115 MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
           +++GNK DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+   E 
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180

Query: 175 ALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCC 209
            L       IK+        S            C 
Sbjct: 181 ELYNEFPEPIKLDKNERAKASA---------ESCS 206

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  306 bits (786), Expect = e-108
 Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 4/176 (2%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP-IKLQIW 60
           S+    K +++GD   GK+ L   F  + F   +  TIG++F  R +T+ G   + LQIW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HANPNMSIMLV 117
           D  GQ     +   Y  GA G LLVYDIT  ++F +L  W    ++    +     + LV
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 118 GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           GNK DL H R +  E+  +F +ENG      SA+T  +V   F K AA+IL     
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLN 177

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  304 bits (782), Expect = e-107
 Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 1/167 (0%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
            +   K +++G+  VGKS ++ ++    F   +  TIGV+F  R + ++   ++L +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE F +IT++YYRGA   +LV+  T RE+F  +SSW E        ++   LV NK D
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKID 120

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           L     +  EE E  AK   L F   S +   NV E F   A K LQ
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  303 bits (779), Expect = e-107
 Identities = 66/163 (40%), Positives = 99/163 (60%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  ++GDTGVGKS ++ +F +  F P  + TIG  F  + V       K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH  P++ + + GNKCDL   
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           R V + + + +A     +F+E SA+ A N+ E FI+ + +I  
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  302 bits (777), Expect = e-106
 Identities = 63/175 (36%), Positives = 102/175 (58%), Gaps = 6/175 (3%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
               LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +DG  + +QIWD
Sbjct: 3   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLV 117
           TAGQE FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 118 GNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNI 171
           GNK D++  R VS EE + + ++NG   + E SA+ A NV  AF +   ++L   
Sbjct: 123 GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  302 bits (777), Expect = e-106
 Identities = 63/172 (36%), Positives = 98/172 (56%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           S     K  ++GDTGVGKS ++ +F    F      TIG  F  + V       K  IWD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE F S+   YYRG+A A++VYDIT++++F  L  W+++ ++H   N+ + + GNKC
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           DL+  R V  ++ +++A+  G + +E SA+ A N+EE F   + +I      
Sbjct: 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPH 190

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  302 bits (775), Expect = e-106
 Identities = 68/166 (40%), Positives = 107/166 (64%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +    FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R ++LQ+WD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FRS+  SY R +  A++VYDIT   +F+  S W++D R     ++ IMLVGNK 
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           DL+ +R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  301 bits (774), Expect = e-105
 Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 1/204 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE-FGARMVTIDGRPIKLQIW 60
             +  +K  +IGD GVGK+  + +  D RF+  ++ T+G        +   G  IK  +W
Sbjct: 7   RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVW 66

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQE    +   YY GA+GA+L +D+T R T  +L+ W+++ +        I++  NK
Sbjct: 67  DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            D+ +R+ +SK+   +  K     + E SA+TA N    F+  A           +  VN
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVN 186

Query: 181 DSGIKVGYGRGQGPSGARDGTVSQ 204
               +V Y             + Q
Sbjct: 187 LEPTEVNYDYHSPEESKYIDYMEQ 210

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  290 bits (744), Expect = e-101
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 40/209 (19%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIK---- 56
           M     +K +++G++ VGKS ++L+ T   F    + TIG  F   +V ++   IK    
Sbjct: 2   MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61

Query: 57  ---------------------------------LQIWDTAGQESFRSITRSYYRGAAGAL 83
                                              IWDTAGQE + SI   YYRGA  A+
Sbjct: 62  NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121

Query: 84  LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL 143
           +V+DI+   T +   +W+   +   + N  I+LV NK D      V   E +++A++N L
Sbjct: 122 VVFDISNSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNK-FQVDILEVQKYAQDNNL 178

Query: 144 LFLEASARTAQNVEEAFIKTAAKILQNIQ 172
           LF++ SA+T  N++  F   A +I +NI 
Sbjct: 179 LFIQTSAKTGTNIKNIFYMLAEEIYKNII 207

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  289 bits (742), Expect = e-101
 Identities = 65/181 (35%), Positives = 106/181 (58%), Gaps = 9/181 (4%)

Query: 1   MS--YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKL 57
           MS     + K II+GD+GVGK+ L+ ++ + ++   +  TIG +F  + VT+DG +   +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMS 113
           Q+WDTAGQE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++   HAN        
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120

Query: 114 IMLVGNKCDLAH-RRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNI 171
            +++GNK D    ++ VS++  ++ AK  G +     SA+ A NV+ AF + A   LQ  
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180

Query: 172 Q 172
           Q
Sbjct: 181 Q 181

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  280 bits (718), Expect = 5e-97
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
                FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WD
Sbjct: 11  EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWD 70

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK 
Sbjct: 71  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKV 129

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           D+  R+     +   F ++  L + + SA++  N E+ F+  A K++ +   
Sbjct: 130 DIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  260 bits (666), Expect = 2e-89
 Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 2/174 (1%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
             D +FK +++G++GVGKS L   F   +    H+     +   R + +D   + L ++D
Sbjct: 19  QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYD 78

Query: 62  TAGQESFRSITRS-YYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGN 119
              Q       R    +     L+V+ +T R +F+ +   L        + ++ ++LVGN
Sbjct: 79  IWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 138

Query: 120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           K DLA  R VS EEG   A       +E SA    N  E F     +I      
Sbjct: 139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGR 192

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  257 bits (658), Expect = 1e-88
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 2/166 (1%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           +FK +++G++GVGKS L   F   +    H++    +   R + +D   + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 66  ESFRSITRS-YYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDL 123
                  +    +     L+V+ +T R +F+ +   L        + ++ ++LVGNK DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           A  R VS EEG   A       +E SA    N  E F     +I  
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  257 bits (658), Expect = 2e-88
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 2/170 (1%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
                 K +++G  GVGKS L +QF    F   +D TI   +  ++ ++DG P +L I D
Sbjct: 5   PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNK 120
           TAGQE F ++   Y R   G LLV+ I  R++FN +        R     +  ++LVGNK
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            DL  +R V + E   F   + + + EASA+   NV+EAF +    + + 
Sbjct: 124 ADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  252 bits (645), Expect = 3e-86
 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 2/173 (1%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +   L K I++G  GVGKS L LQF    F   ++ T    +  + V +DG  +++ I D
Sbjct: 14  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILD 72

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNK 120
           TAGQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
            DL  +R VS EE +  A++  + ++E SA+T  NV++ F     +I     E
Sbjct: 133 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  252 bits (645), Expect = 5e-86
 Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 15/209 (7%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +   L K I++G  GVGKS L LQF    F   ++ T    +  + V +DG  +++ I D
Sbjct: 10  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILD 68

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNK 120
           TAGQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK
Sbjct: 69  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            DL  +R VS EE +  A++  + ++E SA+T  NV++ F     +I     E + +   
Sbjct: 129 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEK-- 186

Query: 181 DSGIKVGYGRGQGPSGARDGTVSQRGGCC 209
                       G    +      R  CC
Sbjct: 187 -----------NGKKKRKSLAKRIRERCC 204

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  247 bits (633), Expect = 1e-84
 Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 2/163 (1%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  + V +DG  +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 62

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +R VS EE +  A +  + ++E SA+T  NV++ F     +I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  247 bits (633), Expect = 3e-84
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 2/168 (1%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           M      K +I+G   VGK+ L  QF +  F   +D T+   + +++VT+      L + 
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLV 77

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGN 119
           DTAGQ+ +  +  S+  G  G +LVY +T   +F  + S  +     H    + ++LVGN
Sbjct: 78  DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137

Query: 120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           K DL+  R V   EG++ A+  G  F+E+SAR  Q  +  F K   +I
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  245 bits (628), Expect = 8e-84
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 2/168 (1%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           M      K  I+G   VGKS L +QF + +F   +D TI   F  +++T++G+   LQ+ 
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLV 59

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGN 119
           DTAGQ+ +    ++Y     G +LVY +T  ++F  +               + IMLVGN
Sbjct: 60  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119

Query: 120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           K DL   R +S EEG+  A+     FLE+SA+  Q   + F +   + 
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  244 bits (624), Expect = 2e-83
 Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 3/166 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++G+  VGKS ++L+F    F    + TIG  F  + VTI+   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH- 125
            F S+   YYR A  AL+VYD+T+ ++F     W+++  + A+ ++ I LVGNK D    
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 126 --RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
              R V++EEGE+ A+E GLLF E SA+T +NV + F+    KI  
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  240 bits (616), Expect = 4e-82
 Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 4/173 (2%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L++ +++GD GVGK+ L   F  K+ + +H+  +G +   R +T+DG    L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 66  ESFRSIT--RSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCD 122
           E         S  +G +  ++VY I  R +F   S       R H   ++ I+LVGNK D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 175
           LA  R VS EEG   A      F+E SA    NV E F     ++    ++ A
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDSA 175

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  237 bits (606), Expect = 2e-80
 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 3/170 (1%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
                +K +++GD GVGKS L +QF  K F   +D TI   +  +   ID +   L + D
Sbjct: 14  ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLD 72

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNK 120
           TAGQE F ++   Y R   G L+VY +T + +F H+  + +   R     +  ++LV NK
Sbjct: 73  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 132

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQ 169
            DL H R V++++G++ A +  + ++E SA+    NV++ F      I Q
Sbjct: 133 VDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  235 bits (602), Expect = 1e-79
 Identities = 62/171 (36%), Positives = 87/171 (50%), Gaps = 4/171 (2%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           M+     K  I G  GVGKS L+++F  KRF   +D T+   +     TID   + ++I 
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEIL 81

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGN 119
           DTAGQE        + R   G +LVYDIT R +F  +              N++++LVGN
Sbjct: 82  DTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGN 140

Query: 120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQ 169
           K DL H R VS EEGE+ A E    F E SA T + N+ E F +   ++ +
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  232 bits (594), Expect = 6e-79
 Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F    D TI   +  + V IDG    L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E  ++  +  ++ ++LVGNK DLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  231 bits (591), Expect = 2e-78
 Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 2/162 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +F  + + +D  P  L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F S+   Y +   G +LVY +  +++F  +    +   R      + ++LVGNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            R VS  EG   A+E G  F+E SA++   V+E F +   ++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  229 bits (587), Expect = 9e-78
 Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 3/165 (1%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           ++K +++G  GVGKS L   F      P      G  +  R + +DG    L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLA 124
           +  R +           ++VY +T + +F   S       R     ++ I+LVGNK DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
             R VS +EG   A      F+E SA    NV+  F     +I  
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  227 bits (582), Expect = 4e-77
 Identities = 61/165 (36%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            R V KE+G+  A++     FLE+SA++  NV E F     +I +
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  227 bits (582), Expect = 1e-76
 Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 18/210 (8%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
                ++ ++ G  GVGKS L+L+F    F+  +  TI   +  ++++ D     LQI D
Sbjct: 4   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITD 62

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ--HANPNMSIMLVGN 119
           T G   F ++ R         +LV+ +T +++   L    +   Q   +  ++ +MLVGN
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122

Query: 120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAV 179
           KCD   +R V   E +  A+E    F+E SA+   NV+E F +      +      +D  
Sbjct: 123 KCDE-TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNID-- 179

Query: 180 NDSGIKVGYGRGQGPSGARDGTVSQRGGCC 209
                          SG +  T   +G C 
Sbjct: 180 ------------GKRSGKQKRTDRVKGKCT 197

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  225 bits (576), Expect = 5e-76
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           ++  + G  GVGKS L+L+F    F+  +  T+   +  ++++ D     LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLA 124
            F ++ R         +LVY IT R++   L    E   +      ++ IMLVGNKCD +
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
             R V   E E  A+     F+E SA+   NV+E F +      +
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 167

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  225 bits (576), Expect = 1e-75
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 7/171 (4%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRP---IKL 57
           S +  ++ ++IG+ GVGKS L   F         D   +G +   R + +DG     I L
Sbjct: 33  SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92

Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIML 116
            +W+  G+  +  +     +     L+VY IT R +F   S       R     ++ I+L
Sbjct: 93  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150

Query: 117 VGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           VGNK DL   R VS  EG   A      F+E SA    NV+E F     ++
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  223 bits (572), Expect = 2e-75
 Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
                    I+G  G GKS L ++F  KRF   +D  +   +     T+D +P+ L++ D
Sbjct: 17  QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMD 75

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVG 118
           TA  ++ R+  R Y   A   L+VY +  R++F+  SS+LE    HA     ++  +L+G
Sbjct: 76  TADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLG 134

Query: 119 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASART-AQNVEEAFIKTAAKI 167
           NK D+A  R V+K EG   A   G LF E SA    ++V+  F +   + 
Sbjct: 135 NKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  222 bits (569), Expect = 9e-75
 Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 3/180 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-P 122

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIK 185
            R V  ++ +  A+  G+ F+E SA+T Q V++AF     +I ++ ++ + D        
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKS 182

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  219 bits (561), Expect = 1e-73
 Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 80

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  ++ + E  ++  +  ++ ++LVGNKCDL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            R V  ++  + AK  G+ F+E SA+T Q VE+AF     +I Q
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  217 bits (555), Expect = 9e-73
 Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 15/177 (8%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMVTIDG---RPIKLQIWD 61
            K +I+G+TG GK+ LL Q    +   +     T+G++     + I     R + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNK 120
            AG+E F S    +    A  L VYD+++ +   + +  WL + +  A  +  ++LVG  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTH 121

Query: 121 CDLAHRR---AVSKEEGEQFAKENGL-----LFLEASARTAQNVEEAFIKTAAKILQ 169
            D++  +   A   +  ++   + G           +   +  + +       + L 
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  216 bits (551), Expect = 6e-72
 Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 7/171 (4%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRP---IKL 57
                ++ ++IG+ GVGKS L   F         D   +G +   R + +DG     I L
Sbjct: 2   FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILL 61

Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIML 116
            +W+  G+  +  +     +     L+VY IT R +F   S       R     ++ I+L
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119

Query: 117 VGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           VGNK DL   R VS  EG   A      F+E SA    NV+E F     ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  198 bits (507), Expect = 2e-65
 Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 11/171 (6%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  I+G+   GKS L+ ++    +        G  F  + + +DG+   L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEES-PEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDL-- 123
             +     +       + V+ +    +F  + ++        N   + ++LVG +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 124 AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQE 173
           A+ R +      + + +     + E  A    NVE  F   A K++   ++
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  192 bits (490), Expect = 5e-63
 Identities = 34/179 (18%), Positives = 69/179 (38%), Gaps = 13/179 (7%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
             +  ++GD   GKS L+ +F    +Q   + T   ++  + + +DG+   + I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGA 64

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE---DARQHANPNMSIMLVG--NK 120
              +     +   A   + V+ +    +F  +S         R      +++ LVG  ++
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119

Query: 121 CDLAHRRAVSKEEGEQF-AKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 178
              +  R V         A      + E  A    NV+  F + A K++   ++  L A
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  199 bits (507), Expect = 2e-61
 Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 12/177 (6%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI--------DG 52
           + +    K  +IGD   GK+ LL Q   + F P    T G+    +            + 
Sbjct: 36  LVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDEL 95

Query: 53  RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM 112
           +      WD  GQE   +  + +   ++  +L+ D     T ++   WL    ++     
Sbjct: 96  KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG-GKS 151

Query: 113 SIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            +++V NK D      + +++  +        F   S +    VE       + +L 
Sbjct: 152 PVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  166 bits (422), Expect = 2e-52
 Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 7/170 (4%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +     K +++GD  VGK+CLLL F+       +  T+   F   ++        L +WD
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWD 77

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNK 120
           TAGQE +  +    Y  +   LL + +  R +F+++S+ W  + + +       +LVG K
Sbjct: 78  TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLK 136

Query: 121 CDLAH--RRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
            DL       V+K+EG+   ++ G + ++EAS+     + E F + +   
Sbjct: 137 VDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF-EKSVDC 185

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  159 bits (405), Expect = 5e-50
 Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 15/179 (8%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MS     K + +GD  VGK+CLL+ +T   F   +  T+   F A +  ++G  + L +W
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANV-VVNGATVNLGLW 61

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ ++S  W+ + + +A P + I+LVG 
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGT 120

Query: 120 KCDL----------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
           K DL               ++  +GE+  K  G   ++E S+++ +NV+  F   A ++
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF-DAAIRV 178

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  154 bits (392), Expect = 1e-47
 Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 12/170 (7%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MS     K + +GD  VGK+C+L+ +T  +F   +  T+   F A  V +DG+ + L +W
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLW 62

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ ++   W+ + R+ A PN+ I+LVG 
Sbjct: 63  DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGT 121

Query: 120 KCDL--------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
           K DL         H   ++  +GE+  K+ G   ++E S++T QNV+  F
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  152 bits (386), Expect = 8e-47
 Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 17/175 (9%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD G GK+ LL+ F D  F   +  T+   +    + + G+P+ L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQD 93

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +   +Y  A+  LL +D+T   +F+++ + W  +        + I++VG K DL  
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRK 152

Query: 126 RRA------------VSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
            ++            V+   G++ A+  G + +LE SAR   NV   F + AA++
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF-QEAAEV 206

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  149 bits (377), Expect = 2e-45
 Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 17/174 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD   GK+CLL+ F+   F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 85

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
           +  +    Y      L+ + +   ++  ++   W+ + +    PN+ I+LV NK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD 144

Query: 124 ---------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
                      +  V  ++G   A       +LE SA+T + V E F +TA + 
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF-ETATRA 197

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  147 bits (372), Expect = 7e-45
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 19/181 (10%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
               K +I+GD   GK+CLL+ F+  +F  V+  T+  E     + +DG+ ++L +WDTA
Sbjct: 23  AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCD 122
           GQE +  +    Y      L+ + I   ++  ++   W  + +    PN+ I+LVGNK D
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD 140

Query: 123 L------------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF---IKTAAK 166
           L              +  V  EEG   A       +LE SA+T + V E F    +   +
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

Query: 167 I 167
           +
Sbjct: 201 V 201

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  144 bits (364), Expect = 1e-43
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 19/175 (10%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+  +  +  V +DG+P+ L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F N  + W  + R H  PN  I+LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148

Query: 124 ----------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF---IKTA 164
                          ++  +G   AKE G + +LE SA T + ++  F   I+  
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  140 bits (355), Expect = 2e-42
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 15/173 (8%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T   F P   +    +  +  V +DG+P+ L +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---- 123
           +  +    Y     +L+ + +    +F ++ +      +H  PN  I+LVG K DL    
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125

Query: 124 --------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
                        ++  +G   AKE G + +LE SA T + ++  F   A + 
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF-DEAIRA 177

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  140 bits (355), Expect = 3e-42
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 20/181 (11%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           + +   K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WD
Sbjct: 24  NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWD 82

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNK 120
           T+G   + ++    Y  +   L+ +DI+R ET + +   W  + ++   PN  ++LVG K
Sbjct: 83  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCK 141

Query: 121 CDL------------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQN-VEEAF---IKT 163
            DL              +  VS ++G   AK+ G   ++E SA  ++N V + F      
Sbjct: 142 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 201

Query: 164 A 164
            
Sbjct: 202 C 202

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  139 bits (353), Expect = 3e-42
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 17/168 (10%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 67

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
           + ++    Y  +   L+ +DI+R ET + +   W  + ++   PN  ++LVG K DL   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126

Query: 124 ---------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQN-VEEAF 160
                      +  VS ++G   AK+ G   ++E SA  ++N V + F
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  138 bits (350), Expect = 2e-41
 Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 18/181 (9%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
                 K +++GD   GK+ +L       +   +  T+   + A +   + + ++L +WD
Sbjct: 23  PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACL-ETEEQRVELSLWD 81

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNK 120
           T+G   + ++    Y  +   LL +DI+R ET  + L  W  +   +  P+  ++L+G K
Sbjct: 82  TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCK 140

Query: 121 CDLAHRRA------------VSKEEGEQFAKENGLL-FLEASARTAQ-NVEEAFIKTAAK 166
            DL    +            +S E+G   AK+ G   +LE SA T++ ++   F +TA+ 
Sbjct: 141 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF-RTASM 199

Query: 167 I 167
           +
Sbjct: 200 L 200

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  137 bits (348), Expect = 2e-41
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 16/174 (9%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
            +     K +++GD  VGK+ L++ +T   +   +  T   +  + +V++DGRP++LQ+ 
Sbjct: 15  GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLC 73

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGN 119
           DTAGQ+ F  +    Y      LL + +    +F +    W+ + R H  P   I+LVG 
Sbjct: 74  DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGT 132

Query: 120 KCDLAHRRA------------VSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
           + DL                 V +E  +  A+E     ++E SA T +N++E F
Sbjct: 133 QSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  135 bits (341), Expect = 3e-40
 Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 17/178 (9%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
             + K +++GD  VGK+CLL+ + +  F   +  T+  +  A  VT+ G+   L ++DTA
Sbjct: 16  ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTA 74

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD 122
           GQE +  +    Y      L+ + +    +F +    W+ + +++A PN+  +L+G + D
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQID 133

Query: 123 LAHRRA------------VSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
           L                 +  E+G++ AKE G   ++E SA T + ++  F   A   
Sbjct: 134 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF-DEAIIA 190

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  134 bits (339), Expect = 2e-39
 Identities = 46/220 (20%), Positives = 70/220 (31%), Gaps = 66/220 (30%)

Query: 13  GDTGVGKSCLLLQF---TDKRFQPVHDLTIG-VEFGARMV--------------TIDGRP 54
           G  G+GKSCL  +F   +   F   H   +   +FG R+V                D   
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 55  IKLQIW-------DTAGQESFRSITRSYYRGAA--------------------------- 80
            K+ I        D   Q    +  + Y + AA                           
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 81  ----------GALLVYDITR--RETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAHRR 127
                     G LL  D++R     F+    ++ +           I++V  KCD    R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 128 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +        +K+N L  +E SAR+  NV+ AF      I
Sbjct: 215 YIRDAHTFALSKKN-LQVVETSARSNVNVDLAFSTLVQLI 253

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  105 bits (264), Expect = 1e-27
 Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 19/178 (10%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
             L K +++GD  VGK+CLL+ +T   F P   +    +  +  V +DG+P+ L +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 211

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCD 122
           G E +  +    Y      L+ + +    +F+H+ + W  + R H  PN  I+LVG K D
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLD 270

Query: 123 L------------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF---IKTA 164
           L                 ++  +G   AKE G + +LE SA T + ++  F   I+  
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 87.1 bits (216), Expect = 1e-21
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 19/186 (10%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKR----------FQPVHDLTIGVEFGARMV-TIDGRPI 55
           FK +  G    GK+  L     K                + T+  +F    +  + G   
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 56  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI- 114
           +  ++   GQ  + +  +   RG  G + V D        +  S        A   +++ 
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 115 ---MLVG-NKCDLAHRRAVSKEE-GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
              +++  NK DL    A+  E        E     LEA A   + V E   + +  +L 
Sbjct: 135 DVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192

Query: 170 NIQEGA 175
            +  G+
Sbjct: 193 RVAGGS 198

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 71.9 bits (176), Expect = 6e-16
 Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 18/177 (10%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP-IKLQIWDTAGQE 66
           + +++G    GKS +      K   P   L +          I     +  QIWD  GQ 
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQM 80

Query: 67  SFRSIT---RSYYRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
            F   T      +RG    + V D      E    L   +  A +  NP+M+  +  +K 
Sbjct: 81  DFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKV 139

Query: 122 DLAH-------RRAVSKEEGEQFAK---ENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           D          +R + +   +  A    E   L    ++    ++ EAF K   K++
Sbjct: 140 DGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLI 196

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 72.3 bits (177), Expect = 2e-15
 Identities = 28/183 (15%), Positives = 67/183 (36%), Gaps = 19/183 (10%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQE 66
           K +++G +G GKS +        +       +G         +     + L +WD  GQ+
Sbjct: 5   KLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63

Query: 67  SF-----RSITRSYYRGAAGALLVYDITRRETFN---HLSSWLEDARQHANPNMSIMLVG 118
            F            ++     + V+D+   E        +  L+  R++ +P+  I ++ 
Sbjct: 64  VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFVLL 122

Query: 119 NKCDL--AHRRAVSKEEGEQFAKEN------GLLFLEASARTAQNVEEAFIKTAAKILQN 170
           +K DL    +R    +   +   E         L    ++   +++ +A+ +    ++ N
Sbjct: 123 HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIPN 182

Query: 171 IQE 173
           +  
Sbjct: 183 MSN 185

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 61.1 bits (149), Expect = 5e-12
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 19/162 (11%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTAGQE 66
           + +G    GK+ ++ +      Q  + L TIG  +E            +   ++D +GQ 
Sbjct: 25  LCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE------KFKSSSLSFTVFDMSGQG 78

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH---ANPNMSIMLVGNKCDL 123
            +R++   YY+     + V D + R         L+    H    +  + I+   NK DL
Sbjct: 79  RYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL 138

Query: 124 AHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
               AV+  +  +       K+       + A   + ++E  
Sbjct: 139 RD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 60.3 bits (147), Expect = 7e-12
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 33/167 (19%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTAGQE 66
           +I+G  G GK+ +L +      + V  + TIG  VE      T+  + +K Q+WD  G  
Sbjct: 11  LILGLDGAGKTTILYRLQVG--EVVTTIPTIGFNVE------TVTYKNLKFQVWDLGGLT 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-----ANPNMS--IMLV-G 118
           S R   R YY      + V D   R+        +  ++           +   I++V  
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRD-------RIGISKSELVAMLEEEELRKAILVVFA 115

Query: 119 NKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           NK D+    A++  E          K+      + SA     ++EA 
Sbjct: 116 NKQDMEQ--AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 60.7 bits (148), Expect = 8e-12
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 33/167 (19%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRF---QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +++G    GK+ +L +          P    T+G       +      I  ++WD  GQ 
Sbjct: 26  LMLGLDNAGKTSILYRLHLGDVVTTVP----TVG--VNLETLQYKN--ISFEVWDLGGQT 77

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-----ANPNMS--IMLV-G 118
             R   R Y+      + V D T R+        +  A+           +   ++L+  
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDRD-------RMGVAKHELYALLDEDELRKSLLLIFA 130

Query: 119 NKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           NK DL    A S+ E  EQ             +++S++T   + E  
Sbjct: 131 NKQDLPD--AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 25/178 (14%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTA 63
            K II+G    GK+ +L QF     + VH   TIG  VE       I     +  +WD  
Sbjct: 17  HKVIIVGLDNAGKTTILYQF--SMNEVVHTSPTIGSNVE------EIVINNTRFLMWDIG 68

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGN 119
           GQES RS   +YY      ++V D T RE  +     L   L            +++  N
Sbjct: 69  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFAN 125

Query: 120 KCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
           K D+     ++  E  +       K++        A T + + +      +++   ++
Sbjct: 126 KQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 19/163 (11%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTA 63
            + +I+G  G GK+ +L +   +  + V    TIG  VE      T+  + +KL +WD  
Sbjct: 19  LRILILGLDGAGKTTILYRL--QIGEVVTTKPTIGFNVE------TLSYKNLKLNVWDLG 70

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 122
           GQ S R   R YY   A  + V D T ++  +  S  L    Q      + +LV  NK D
Sbjct: 71  GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130

Query: 123 LAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
                A+S  E  ++      K+     + +SA   + + E  
Sbjct: 131 QPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 24/172 (13%)

Query: 3   YDYLF-----KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRP 54
           +  +F     + +++G    GK+ +L +   K  + V  + TIG  VE      T++ + 
Sbjct: 21  FSRIFGKKQMRILMVGLDAAGKTTILYKL--KLGEIVTTIPTIGFNVE------TVEYKN 72

Query: 55  IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI 114
           I   +WD  GQ+  R + R Y++   G + V D   RE     +  L+   Q      ++
Sbjct: 73  ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132

Query: 115 MLV-GNKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           +LV  NK D+ +  A+   E  ++      +          A     + +  
Sbjct: 133 LLVFANKQDMPN--AMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 25/163 (15%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTAGQE 66
           +++G    GK+ +L +   K  + V  + TIG  VE      T++ + I   +WD  GQ+
Sbjct: 4   LMVGLDAAGKTTILYKL--KLGEIVTTIPTIGFNVE------TVEYKNISFTVWDVGGQD 55

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
             R + R Y++   G + V D   RE  N     L   L +       +  +++  NK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQD 112

Query: 123 LAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           L +  A++  E  ++      +          A +   + E  
Sbjct: 113 LPN--AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 60.8 bits (147), Expect = 3e-11
 Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70
           ++G    GKS +         QP+  L +       +       I L + +  GQ ++  
Sbjct: 4   LMGVRRCGKSSICKVVFHN-MQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNYFE 61

Query: 71  ---ITRSYYRGAAGALLVYDITR--RETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
               +   ++     + V D          +L+  +E A +  NP+++I ++ +K D 
Sbjct: 62  PSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDG 118

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 58.0 bits (141), Expect = 7e-11
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 25/163 (15%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTAGQE 66
           +++G    GK+ +L +F            T+G  ++      T++ R  KL IWD  GQ+
Sbjct: 22  LMLGLDNAGKTTILKKF--NGEDVDTISPTLGFNIK------TLEHRGFKLNIWDVGGQK 73

Query: 67  SFRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           S RS  R+Y+    G + V D   R    +    L S L + R       ++++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER---LAGATLLIFANKQD 130

Query: 123 LAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           L    A+S     E       + +       SA T +++    
Sbjct: 131 LPG--ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 171

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 57.6 bits (140), Expect = 8e-11
 Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 19/163 (11%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTA 63
            K II+G    GK+ +L QF     + VH   TIG  VE       I     +  +WD  
Sbjct: 22  HKVIIVGLDNAGKTTILYQF--SMNEVVHTSPTIGSNVE------EIVINNTRFLMWDIG 73

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 122
           GQES RS   +YY      ++V D T RE  +     L     H +   + +L+  NK D
Sbjct: 74  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 133

Query: 123 LAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           +     ++  E  +       K++        A T + + +  
Sbjct: 134 VKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 25/133 (18%), Positives = 41/133 (30%), Gaps = 17/133 (12%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           II G    GK+ LL   T    +P    +        +   D     + + D  G    R
Sbjct: 52  IIAGPQNSGKTSLLTLLTTDSVRPTVV-SQE-----PLSAADYDGSGVTLVDFPGHVKLR 105

Query: 70  SITRSYYRGAAGAL--LVY------DITR-RETFNHLSSWLEDARQHANPNMSIMLVGNK 120
                Y +  A  +  L++      D  +   T   L   L          + I++  NK
Sbjct: 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 165

Query: 121 CDLAHRRAVSKEE 133
            +L    A    +
Sbjct: 166 SELFT--ARPPSK 176

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 17/133 (12%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           II G    GK+ LL   T    +P    +        +   D     + + D  G    R
Sbjct: 16  IIAGPQNSGKTSLLTLLTTDSVRPTVV-SQE-----PLSAADYDGSGVTLVDFPGHVKLR 69

Query: 70  SITRSYYRGAAGAL--LVY-----DITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNK 120
                Y +  A  +  L++        ++   T   L   L          + I++  NK
Sbjct: 70  YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 129

Query: 121 CDLAHRRAVSKEE 133
            +L    A    +
Sbjct: 130 SELFT--ARPPSK 140

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 55.3 bits (134), Expect = 7e-10
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 20/123 (16%)

Query: 18  GKSCLLLQFTDKRF---QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRS 74
           GK+ LL    + R    QP    T      +  + I    IK   +D  G    R + + 
Sbjct: 35  GKTTLLHMLKNDRLATLQP----TWH--PTSEELAIGN--IKFTTFDLGGHIQARRLWKD 86

Query: 75  YYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130
           Y+    G + + D    E F+     L +    A      ++  +++GNK D  +  AVS
Sbjct: 87  YFPEVNGIVFLVDAADPERFDEARVELDALFNIAE---LKDVPFVILGNKIDAPN--AVS 141

Query: 131 KEE 133
           + E
Sbjct: 142 EAE 144

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 33/167 (19%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTAGQE 66
           +++G    GK+ LL Q         H   T G  ++      ++  +  KL +WD  GQ 
Sbjct: 20  LLLGLDNAGKTTLLKQL--ASEDISHITPTQGFNIK------SVQSQGFKLNVWDIGGQR 71

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-----ANPNMS---IMLVG 118
             R   RSY+      + V D   R+         E+  Q          +S   +++  
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRK-------RFEETGQELTELLEEEKLSCVPVLIFA 124

Query: 119 NKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           NK DL    A    E  E       ++        SA T + V++  
Sbjct: 125 NKQDLLT--AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 20/123 (16%)

Query: 18  GKSCLLLQFTDKRF---QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRS 74
           GK+ LL    D R     P    T+     +  +TI G  +    +D  G    R + ++
Sbjct: 37  GKTTLLHMLKDDRLGQHVP----TLH--PTSEELTIAG--MTFTTFDLGGHIQARRVWKN 88

Query: 75  YYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130
           Y     G + + D    E        L S + D       N+ I+++GNK D     A+S
Sbjct: 89  YLPAINGIVFLVDCADHERLLESKEELDSLMTDET---IANVPILILGNKIDRPE--AIS 143

Query: 131 KEE 133
           +E 
Sbjct: 144 EER 146

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 25/172 (14%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKL 57
           +      + +++G    GK+ +L +   K  + V  + TIG  VE      T++ + I  
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKL--KLGEIVTTIPTIGFNVE------TVEYKNISF 211

Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMS 113
            +WD  GQ+  R + R Y++   G + V D   RE  N     L   L +       +  
Sbjct: 212 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE---LRDAV 268

Query: 114 IMLVGNKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           +++  NK DL +  A++  E  ++      +          A +   + E  
Sbjct: 269 LLVFANKQDLPN--AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 318

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 53.3 bits (129), Expect = 3e-09
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 38  TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL 97
           T+G  F  R +T     + +++WD  GQ  FRS+   Y RG +  + + D   +E     
Sbjct: 54  TVG--FNMRKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEAS 109

Query: 98  SSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEE 133
            + L +         + ++++GNK DL    A+ ++E
Sbjct: 110 KNELHNLLDKPQLQGIPVLVLGNKRDLPG--ALDEKE 144

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 11/130 (8%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           + +G    GK+ L ++    +++     +I     A     + R   L + D  G ES R
Sbjct: 11  LFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSS-AIYKVNNNRGNSLTLIDLPGHESLR 68

Query: 70  -SITRSYYRGAAGALLVYDIT-----RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
             +   +   A   + V D        ++    L   L D+    N + S+++  NK D+
Sbjct: 69  FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKN-SPSLLIACNKQDI 127

Query: 124 AHRRAVSKEE 133
           A   A S + 
Sbjct: 128 AM--AKSAKL 135

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 28/124 (22%)

Query: 48  VTIDGRPIKLQIWDTAG-------------QESFRSITRSYYRGAAGALLVYDITRRETF 94
           + IDG P+ + I DTAG             + +++ I +     A   L + D T  +  
Sbjct: 47  IHIDGMPLHI-I-DTAGLREASDEVERIGIERAWQEIEQ-----ADRVLFMVDGTTTDAV 99

Query: 95  NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154
           +    W  +        + I +V NK D+         E    ++ NG   +  SART +
Sbjct: 100 DPAEIW-PEFIARLPAKLPITVVRNKADIT-------GETLGMSEVNGHALIRLSARTGE 151

Query: 155 NVEE 158
            V+ 
Sbjct: 152 GVDV 155

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 5e-05
 Identities = 30/165 (18%), Positives = 47/165 (28%), Gaps = 39/165 (23%)

Query: 8   KYIII-GDTGVGKSCLLLQ-FTDKRFQ-----PVHDLTIGVEFGARMV---------TID 51
           K ++I G  G GK+ + L      + Q      +  L +        V          ID
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 52  ---------GRPIKLQIWDTAGQESFRSI--TRSYYRGAAGALL----VYDITRRETFNH 96
                       IKL+I     Q   R +  ++ Y       LL    V +      FN 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYEN----CLLVLLNVQNAKAWNAFNL 264

Query: 97  LSSWLEDARQHANPNMSIMLVGNKCDLAHRR-AVSKEEGEQ-FAK 139
               L   R     +           L H    ++ +E +    K
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 20/124 (16%), Positives = 32/124 (25%), Gaps = 25/124 (20%)

Query: 48  VTIDGRPIKLQIWDTAG-------------QESFRSITRSYYRGAAGALLVYDITRRETF 94
              D      ++ DTAG             + S   +       A   L + D+      
Sbjct: 276 FIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAE-----ADLILYLLDLGTERLD 328

Query: 95  NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154
           + L+   E    H  P    + V NK D A                     +  SA    
Sbjct: 329 DELTEIRELKAAH--PAAKFLTVANKLDRAANADALIRAIADGTGTE---VIGISALNGD 383

Query: 155 NVEE 158
            ++ 
Sbjct: 384 GIDT 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.98
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.98
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.98
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.98
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.98
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.98
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.98
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.98
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.94
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.93
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.92
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.89
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.89
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.88
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.88
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.88
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.88
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.87
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.87
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.87
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.87
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.86
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.85
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.85
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.85
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.85
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.85
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.85
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.84
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.84
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.84
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.84
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.84
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.84
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.84
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.83
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.83
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.83
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.83
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.82
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.81
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.8
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.8
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.8
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.8
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.79
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.78
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.78
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.76
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.76
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.76
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.76
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.75
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.75
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.75
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.75
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.74
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.73
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.73
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.69
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.67
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.66
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.66
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.63
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.62
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.61
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.59
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.58
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.58
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.56
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.53
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.52
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.5
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.5
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.48
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.48
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.38
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.36
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.35
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.33
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.27
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.15
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.03
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.93
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.91
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.9
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.9
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.87
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.82
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.77
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.75
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.54
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.52
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.45
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.44
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.32
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.3
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.27
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.19
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.12
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.11
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.0
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.95
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.87
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.57
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.52
2xxa_A	433	Signal recognition particle protein; protein trans	97.43
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.4
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.37
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.36
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.35
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.34
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.31
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.3
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.28
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.27
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.26
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.24
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.24
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.2
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.18
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.17
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.17
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.17
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.13
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.12
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.1
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.1
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.06
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.05
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.04
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.03
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.03
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.03
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.0
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.97
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.97
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.97
1g6h_A	257	High-affinity branched-chain amino acid transport	96.96
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.96
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.95
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.95
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.94
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.94
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.94
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.94
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.94
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.93
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.93
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.92
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.92
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.92
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.91
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.9
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.9
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.89
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.88
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.88
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.88
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.87
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.87
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.87
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.85
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.85
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.85
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.84
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.84
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.84
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.83
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.81
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.81
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.8
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.8
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.78
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.78
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.77
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.77
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.77
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.77
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.76
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.76
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.74
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.73
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.73
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.71
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.7
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.7
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.69
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.68
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.67
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.66
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.64
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.64
3co5_A	143	Putative two-component system transcriptional RES	96.64
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.64
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.64
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.64
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.64
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.62
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.62
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.62
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.62
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.61
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.61
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.6
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.6
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.59
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.57
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.57
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.57
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.56
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.56
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.56
1via_A	175	Shikimate kinase; structural genomics, transferase	96.55
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.54
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.53
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.52
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.51
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.5
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.49
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.49
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.49
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.48
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.48
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.48
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.48
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.47
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.46
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.44
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.43
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.43
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.42
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.42
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.41
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.39
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.38
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.38
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.38
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.38
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.37
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.36
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.35
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.35
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.34
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.33
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.33
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.31
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.3
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.29
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.29
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.28
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.28
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.27
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.26
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.26
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.26
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.26
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.26
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.25
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.24
2og2_A	359	Putative signal recognition particle receptor; nuc	96.24
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.22
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.2
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.2
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.19
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.18
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.15
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.15
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.14
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.13
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.1
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.09
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.08
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.07
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.07
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.07
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.05
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.05
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.03
3bos_A	242	Putative DNA replication factor; P-loop containing	96.02
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.02
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.01
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.0
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.99
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.95
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.94
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.93
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.91
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.89
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.85
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.85
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.84
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.79
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.76
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.75
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.73
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.73
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.73
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.73
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.72
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.71
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.7
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.7
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.69
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.69
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.67
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.67
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.67
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.66
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.64
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.62
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.53
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.52
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.51
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.49
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.49
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.49
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.47
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.46
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.45
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.45
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.41
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.41
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.37
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.37
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.36
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.34
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.34
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.34
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.34
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.31
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.3
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.27
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.26
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.25
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.24
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.22
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.22
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.21
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.2
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.19
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.18
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.17
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.16
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.14
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.14
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.13
3cwq_A	209	Para family chromosome partitioning protein; alpha	95.13
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.12
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.1
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.06
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.98
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.98
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.95
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.94
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.94
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.92
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.91
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.9
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	94.89
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.89
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.86
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.85
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.84
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.83

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.6e-42  Score=260.55  Aligned_cols=168  Identities=41%  Similarity=0.702  Sum_probs=146.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      +.+||+|+|++|+|||||+++|..+.|...+.+|.+.++....+.+++..+.+.||||+|++.|..++..+++.+|++++
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il   91 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV   91 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence            45899999999999999999999999999999999999999889999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      |||++++.+++++..|+..+......++|+++|+||+|+.+.+.++.+++++++..++++|+++||++|.||+++|+.|+
T Consensus        92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~  171 (216)
T 4dkx_A           92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  171 (216)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999999999888778899999999999998889999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 028303          165 AKILQNIQ  172 (210)
Q Consensus       165 ~~~~~~~~  172 (210)
                      +.+.....
T Consensus       172 ~~i~~~~~  179 (216)
T 4dkx_A          172 AALPGMES  179 (216)
T ss_dssp             HHC-----
T ss_pred             HHHHhhhc
Confidence            88765443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=3.7e-37  Score=229.73  Aligned_cols=174  Identities=48%  Similarity=0.876  Sum_probs=159.7

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            57789999999999999999999999999888888888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  164 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  164 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888776668999999999999887778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 028303          163 TAAKILQNIQEGAL  176 (210)
Q Consensus       163 l~~~~~~~~~~~~~  176 (210)
                      |.+.+.........
T Consensus       165 l~~~i~~~~~~~~~  178 (206)
T 2bcg_Y          165 MARQIKESMSQQNL  178 (206)
T ss_dssp             HHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHhhccc
Confidence            99999877665543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-37  Score=233.99  Aligned_cols=178  Identities=49%  Similarity=0.841  Sum_probs=148.1

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (210)
                      |.+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus         8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   87 (223)
T 3cpj_B            8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV   87 (223)
T ss_dssp             --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred             CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence            34567899999999999999999999999998888888888888888889998899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      ++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus        88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  167 (223)
T 3cpj_B           88 GALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAF  167 (223)
T ss_dssp             EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887766689999999999998777788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccc
Q 028303          161 IKTAAKILQNIQEGALDA  178 (210)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~  178 (210)
                      ++|.+.+.....+...+.
T Consensus       168 ~~l~~~i~~~~~~~~~~~  185 (223)
T 3cpj_B          168 EELINTIYQKVSKHQMDL  185 (223)
T ss_dssp             HHHHHHHTTCC-------
T ss_pred             HHHHHHHHHHhhhcccCc
Confidence            999999988777666554

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=1.9e-35  Score=220.34  Aligned_cols=197  Identities=36%  Similarity=0.613  Sum_probs=154.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   85 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence            56799999999999999999999999988888888888888888888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCeEEEEecCCCCCHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQNVEE  158 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~  158 (210)
                      +|||++++.++..+..|+..+.....    .+.|+++|+||+|+. ......+++..++. ..+++++++||+++.|+++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  164 (207)
T 1vg8_A           86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ  164 (207)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence            99999999999999999888766543    478999999999997 44566788888887 6678999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccccccCCcccccCCCCCCCCCCCCCcccCCCccC
Q 028303          159 AFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCCS  210 (210)
Q Consensus       159 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  210 (210)
                      +|++|.+.+.....+.......+..+.+.         .....++++++|||
T Consensus       165 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~c~c  207 (207)
T 1vg8_A          165 AFQTIARNALKQETEVELYNEFPEPIKLD---------KNERAKASAESCSC  207 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCC--------------------------
T ss_pred             HHHHHHHHHHHhccccccccCCCccccCC---------cccccccCCCCCCC
Confidence            99999999988776554333333333322         01112366788976

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=2.7e-34  Score=210.56  Aligned_cols=177  Identities=59%  Similarity=0.990  Sum_probs=159.6

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            35679999999999999999999999999888888888888888888999889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+...++..++...+++++++||+++.|++++|++
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  166 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  166 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999998887776678999999999999776778888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccc
Q 028303          163 TAAKILQNIQEGALDAV  179 (210)
Q Consensus       163 l~~~~~~~~~~~~~~~~  179 (210)
                      |.+.+.+...+......
T Consensus       167 l~~~~~~~~~~~~~~~~  183 (186)
T 2bme_A          167 CARKILNKIESGELDPE  183 (186)
T ss_dssp             HHHHHHHHHHSCC----
T ss_pred             HHHHHHHHhhhcCCCcc
Confidence            99999988777655443

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-34  Score=214.43  Aligned_cols=172  Identities=47%  Similarity=0.847  Sum_probs=157.0

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            46789999999999999999999999999888888888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus       103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  182 (201)
T 2ew1_A          103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  182 (201)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888776668999999999999877778888899999989999999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028303          163 TAAKILQNIQEG  174 (210)
Q Consensus       163 l~~~~~~~~~~~  174 (210)
                      |.+.+.....+.
T Consensus       183 l~~~i~~~~~~~  194 (201)
T 2ew1_A          183 LACRLISEARQN  194 (201)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHhhc
Confidence            999988765443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=213.77  Aligned_cols=169  Identities=35%  Similarity=0.534  Sum_probs=150.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            3568999999999999999999999998887777766555 345678888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      +|||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  170 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD  170 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988877653 57999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 028303          163 TAAKILQNIQE  173 (210)
Q Consensus       163 l~~~~~~~~~~  173 (210)
                      |.+.+.....+
T Consensus       171 l~~~i~~~~~~  181 (206)
T 2bov_A          171 LMREIRARKME  181 (206)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHcccc
Confidence            99998876543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=5.2e-34  Score=212.12  Aligned_cols=174  Identities=41%  Similarity=0.781  Sum_probs=160.1

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (210)
                      +++++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            45678899999999999999999999999988888888888888888888999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      ++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus        83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (203)
T 1zbd_A           83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  162 (203)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999998877665689999999999998877788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 028303          161 IKTAAKILQNIQEG  174 (210)
Q Consensus       161 ~~l~~~~~~~~~~~  174 (210)
                      ++|.+.+.+..++.
T Consensus       163 ~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          163 ERLVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998887664

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=6.2e-34  Score=210.33  Aligned_cols=171  Identities=51%  Similarity=0.918  Sum_probs=158.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            56799999999999999999999999998888889899999888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      +|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|
T Consensus        94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  173 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM  173 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988777789999999999998888888899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 028303          164 AAKILQNIQEG  174 (210)
Q Consensus       164 ~~~~~~~~~~~  174 (210)
                      .+.+.......
T Consensus       174 ~~~i~~~~~~~  184 (196)
T 3tkl_A          174 AAEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHHC---
T ss_pred             HHHHHHHhccc
Confidence            99998876654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=215.05  Aligned_cols=178  Identities=59%  Similarity=0.982  Sum_probs=150.4

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (210)
                      |.+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            35678899999999999999999999999888888888888888888888998899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      ++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+...++..++...+++++++||+++.|++++|
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  179 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF  179 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887766789999999999998777788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccc
Q 028303          161 IKTAAKILQNIQEGALDA  178 (210)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~  178 (210)
                      ++|.+.+.....+.....
T Consensus       180 ~~l~~~i~~~~~~~~~~~  197 (200)
T 2o52_A          180 LKCARTILNKIDSGELDP  197 (200)
T ss_dssp             HHHHHHHHHHHHTTSSCG
T ss_pred             HHHHHHHHHHHhcCCCCc
Confidence            999999998877665443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=5.9e-35  Score=213.68  Aligned_cols=172  Identities=48%  Similarity=0.932  Sum_probs=128.8

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            56789999999999999999999999888777778888888888888899899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  164 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888776668999999999999877778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028303          163 TAAKILQNIQEG  174 (210)
Q Consensus       163 l~~~~~~~~~~~  174 (210)
                      |.+.+.....+.
T Consensus       165 l~~~i~~~~~~~  176 (183)
T 2fu5_C          165 LARDIKAKMDKN  176 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc
Confidence            999998876654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=214.00  Aligned_cols=171  Identities=44%  Similarity=0.818  Sum_probs=147.4

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      .+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (201)
T 2hup_A           25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG  104 (201)
T ss_dssp             -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence            45678999999999999999999999999888888888888888888889988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAF  160 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~  160 (210)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...++ +++++||+++.|++++|
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  184 (201)
T 2hup_A          105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF  184 (201)
T ss_dssp             EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998877667899999999999987777888899999999999 99999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028303          161 IKTAAKILQNIQ  172 (210)
Q Consensus       161 ~~l~~~~~~~~~  172 (210)
                      ++|.+.+.....
T Consensus       185 ~~l~~~i~~~~~  196 (201)
T 2hup_A          185 LRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcc
Confidence            999998876543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.7e-34  Score=209.33  Aligned_cols=172  Identities=47%  Similarity=0.818  Sum_probs=157.3

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      .+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  100 (193)
T 2oil_A           21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG  100 (193)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            45678999999999999999999999999988888888888888888889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++.|++++|+
T Consensus       101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  180 (193)
T 2oil_A          101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE  180 (193)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999988776666899999999999987677788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028303          162 KTAAKILQNIQE  173 (210)
Q Consensus       162 ~l~~~~~~~~~~  173 (210)
                      +|.+.+.++..+
T Consensus       181 ~l~~~i~~~~~~  192 (193)
T 2oil_A          181 TVLKEIFAKVSK  192 (193)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhc
Confidence            999998876543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=5.7e-34  Score=210.13  Aligned_cols=171  Identities=81%  Similarity=1.255  Sum_probs=152.9

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      ..+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   97 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   97 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence            45789999999999999999999999998888888888888888888999899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus        98 i~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  177 (191)
T 2a5j_A           98 LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN  177 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776678999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 028303          163 TAAKILQNIQE  173 (210)
Q Consensus       163 l~~~~~~~~~~  173 (210)
                      |.+.+.++..+
T Consensus       178 l~~~i~~~~~~  188 (191)
T 2a5j_A          178 TAKEIYRKIQQ  188 (191)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999877654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=7.9e-34  Score=208.98  Aligned_cols=170  Identities=41%  Similarity=0.785  Sum_probs=155.8

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      ..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            34678999999999999999999999999888888888888888888889889999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...+++++++||+++.|++++|+
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  177 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE  177 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999988877656899999999999987777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          162 KTAAKILQNI  171 (210)
Q Consensus       162 ~l~~~~~~~~  171 (210)
                      +|.+.+.++.
T Consensus       178 ~l~~~i~~~~  187 (189)
T 2gf9_A          178 RLVDVICEKM  187 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887664

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=7.3e-34  Score=206.72  Aligned_cols=168  Identities=68%  Similarity=1.111  Sum_probs=153.9

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      ..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            34678999999999999999999999999888888888888888888889989999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...+++++++||+++.|++++|+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999988887767899999999999987777888899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028303          162 KTAAKILQ  169 (210)
Q Consensus       162 ~l~~~~~~  169 (210)
                      +|.+.+.+
T Consensus       171 ~l~~~i~~  178 (179)
T 1z0f_A          171 EAAKKIYQ  178 (179)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhh
Confidence            99987753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=3.3e-34  Score=215.38  Aligned_cols=177  Identities=37%  Similarity=0.714  Sum_probs=154.1

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCE----------EEEEEEEecCCcchhhh
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR----------PIKLQIWDTAGQESFRS   70 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~   70 (210)
                      +.+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++.          .+.+.+|||||++.+..
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~   99 (217)
T 2f7s_A           20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS   99 (217)
T ss_dssp             -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred             CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence            35678899999999999999999999999887777777777777777777665          78899999999999999


Q ss_pred             hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEe
Q 028303           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS  149 (210)
Q Consensus        71 ~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  149 (210)
                      .+..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++|
T Consensus       100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  179 (217)
T 2f7s_A          100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS  179 (217)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEE
Confidence            999999999999999999999999999998887765443 5799999999999987777888899999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 028303          150 ARTAQNVEEAFIKTAAKILQNIQEGALD  177 (210)
Q Consensus       150 a~~~~~i~~~~~~l~~~~~~~~~~~~~~  177 (210)
                      |+++.|++++|++|.+.+.++..+....
T Consensus       180 a~~g~gi~~l~~~l~~~i~~~~~~~~~~  207 (217)
T 2f7s_A          180 AATGQNVEKAVETLLDLIMKRMEQCVEK  207 (217)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence            9999999999999999998877665433

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.1e-33  Score=204.70  Aligned_cols=172  Identities=46%  Similarity=0.779  Sum_probs=155.3

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +++.++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            46789999999999999999999999998888888889999888899999989999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      ++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNC  164 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999998887654 47899999999999887788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 028303          163 TAAKILQNIQEGA  175 (210)
Q Consensus       163 l~~~~~~~~~~~~  175 (210)
                      |.+.+.....+..
T Consensus       165 l~~~~~~~~~~~~  177 (181)
T 3tw8_B          165 ITELVLRAKKDNL  177 (181)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhhhh
Confidence            9999888766543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2.2e-33  Score=204.74  Aligned_cols=167  Identities=40%  Similarity=0.759  Sum_probs=152.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      .+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   89 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   89 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence            46799999999999999999999999988888888888888888888998999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      +|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..++++.++...+++++++||+++.|++++|++|
T Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  169 (181)
T 2efe_B           90 IVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI  169 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999888766789999999999998777788889999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028303          164 AAKILQN  170 (210)
Q Consensus       164 ~~~~~~~  170 (210)
                      .+.+...
T Consensus       170 ~~~~~~~  176 (181)
T 2efe_B          170 ARRLPRV  176 (181)
T ss_dssp             HHTCC--
T ss_pred             HHHHHhc
Confidence            8877554

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=9.5e-34  Score=206.92  Aligned_cols=170  Identities=32%  Similarity=0.455  Sum_probs=152.1

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (210)
                      |.....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus         1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   79 (181)
T 3t5g_A            1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDIN   79 (181)
T ss_dssp             -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCS
T ss_pred             CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCC
Confidence            6777889999999999999999999999988888888877777 666788999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303           81 GALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  159 (210)
                      ++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  159 (181)
T 3t5g_A           80 GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDV  159 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Confidence            99999999999999999999988866543 57999999999999888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          160 FIKTAAKILQNI  171 (210)
Q Consensus       160 ~~~l~~~~~~~~  171 (210)
                      |+.|.+.+....
T Consensus       160 ~~~l~~~~~~~~  171 (181)
T 3t5g_A          160 FRRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhc
Confidence            999999887654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-34  Score=214.01  Aligned_cols=170  Identities=41%  Similarity=0.792  Sum_probs=156.4

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            46789999999999999999999999998888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  179 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFER  179 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999887888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 028303          163 TAAKILQNIQ  172 (210)
Q Consensus       163 l~~~~~~~~~  172 (210)
                      |.+.+.+..+
T Consensus       180 l~~~i~~~~~  189 (191)
T 3dz8_A          180 LVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhcc
Confidence            9999887654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=9.2e-34  Score=204.69  Aligned_cols=167  Identities=35%  Similarity=0.706  Sum_probs=145.1

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      .+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   81 (170)
T 1z08_A            2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG   81 (170)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence            35678999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1z08_A           82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999999999888776556799999999999987777888899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028303          162 KTAAKIL  168 (210)
Q Consensus       162 ~l~~~~~  168 (210)
                      +|.+.+.
T Consensus       162 ~l~~~~~  168 (170)
T 1z08_A          162 DLCKRMI  168 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998775

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=2.7e-33  Score=201.94  Aligned_cols=164  Identities=43%  Similarity=0.796  Sum_probs=151.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      .+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            46799999999999999999999999988888888888888888888998999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      +|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999998887766789999999999997767778888999999999999999999999999999999


Q ss_pred             HHHH
Q 028303          164 AAKI  167 (210)
Q Consensus       164 ~~~~  167 (210)
                      .+.+
T Consensus       164 ~~~~  167 (170)
T 1r2q_A          164 AKKL  167 (170)
T ss_dssp             HHTS
T ss_pred             HHHH
Confidence            8754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=5.1e-33  Score=206.33  Aligned_cols=169  Identities=36%  Similarity=0.647  Sum_probs=151.4

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEE--------------------------
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP--------------------------   54 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------   54 (210)
                      |..++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..                          
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            788889999999999999999999999999888888888888887777777655                          


Q ss_pred             -----------EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCC
Q 028303           55 -----------IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL  123 (210)
Q Consensus        55 -----------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  123 (210)
                                 +.+.+|||||++.+...+..+++.+|++++|+|++++.++..+..|+..+....  +.|+++|+||+| 
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-  158 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-  158 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-
Confidence                       889999999999999999999999999999999999999999999998887765  489999999999 


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028303          124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~  172 (210)
                      ........+++.+++...+++++++||+++.|++++|++|.+.+.++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  207 (208)
T 3clv_A          159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII  207 (208)
T ss_dssp             CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence            5556778899999999999999999999999999999999999887654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=5.6e-33  Score=200.45  Aligned_cols=165  Identities=40%  Similarity=0.739  Sum_probs=152.5

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            56789999999999999999999999998888888888888888888999899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      ++|||++++.++..+..|+..+........|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999988876678999999999999877778888899999999999999999999999999999


Q ss_pred             HHHHH
Q 028303          163 TAAKI  167 (210)
Q Consensus       163 l~~~~  167 (210)
                      |.+.+
T Consensus       163 i~~~i  167 (170)
T 1z0j_A          163 ISRRI  167 (170)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            98765

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4e-33  Score=203.20  Aligned_cols=169  Identities=45%  Similarity=0.844  Sum_probs=144.9

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (210)
                      .++..++|+|+|++|+|||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            4567899999999999999999999999885 356777788888877788999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      ++|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  165 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  165 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887766789999999999998877788888999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          161 IKTAAKILQN  170 (210)
Q Consensus       161 ~~l~~~~~~~  170 (210)
                      ++|.+.+.+.
T Consensus       166 ~~l~~~~~~~  175 (180)
T 2g6b_A          166 TAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            9999887644

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-33  Score=208.10  Aligned_cols=167  Identities=37%  Similarity=0.665  Sum_probs=152.3

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            46789999999999999999999999998888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...+++++++||+++.|++++|++
T Consensus       100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  179 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQG  179 (192)
T ss_dssp             EEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999988776668999999999999776777888999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028303          163 TAAKILQ  169 (210)
Q Consensus       163 l~~~~~~  169 (210)
                      |.+.+.+
T Consensus       180 l~~~i~~  186 (192)
T 2fg5_A          180 ISRQIPP  186 (192)
T ss_dssp             HHHTCC-
T ss_pred             HHHHHHh
Confidence            9887654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1.6e-33  Score=203.28  Aligned_cols=166  Identities=48%  Similarity=0.895  Sum_probs=144.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1g16_A            1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   80 (170)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence            35799999999999999999999999988888888888888887888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      +|+|++++.++..+..|+..+......+.|+++|+||+|+ ..+....+++..++...+++++++||+++.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A           81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999888876678999999999999 445567788889999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028303          164 AAKILQN  170 (210)
Q Consensus       164 ~~~~~~~  170 (210)
                      .+.+.++
T Consensus       160 ~~~~~~~  166 (170)
T 1g16_A          160 AKLIQEK  166 (170)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9988654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.4e-33  Score=207.10  Aligned_cols=168  Identities=45%  Similarity=0.802  Sum_probs=146.1

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      .++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i  102 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI  102 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999988888888888888888888999889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~  161 (210)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++++.++... +++++++||+++.|++++|+
T Consensus       103 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  182 (192)
T 2il1_A          103 ILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL  182 (192)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999998888776668999999999999877778888888888874 78999999999999999999


Q ss_pred             HHHHHHHHH
Q 028303          162 KTAAKILQN  170 (210)
Q Consensus       162 ~l~~~~~~~  170 (210)
                      +|.+.+.++
T Consensus       183 ~l~~~i~~~  191 (192)
T 2il1_A          183 KLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999988653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2.5e-33  Score=201.91  Aligned_cols=166  Identities=37%  Similarity=0.610  Sum_probs=150.6

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      .++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            45689999999999999999999999998888888888888888888899889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      ++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A           82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            99999999999999999988887655 57899999999999876777888899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028303          163 TAAKILQ  169 (210)
Q Consensus       163 l~~~~~~  169 (210)
                      |.+.+.+
T Consensus       161 l~~~~~~  167 (168)
T 1z2a_A          161 LAEKHLQ  167 (168)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=9.2e-33  Score=202.01  Aligned_cols=165  Identities=33%  Similarity=0.540  Sum_probs=150.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      .+.+||+|+|++|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   94 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   94 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            4579999999999999999999999988888888877776 666788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecC-CCCCHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR-TAQNVEEAFI  161 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~~~~i~~~~~  161 (210)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||+ ++.|++++|+
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~  174 (183)
T 3kkq_A           95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  174 (183)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHH
Confidence            9999999999999999988886643 3678999999999998888889999999999999999999999 9999999999


Q ss_pred             HHHHHHHH
Q 028303          162 KTAAKILQ  169 (210)
Q Consensus       162 ~l~~~~~~  169 (210)
                      .|.+.+.+
T Consensus       175 ~l~~~i~~  182 (183)
T 3kkq_A          175 DLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99988764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=6e-33  Score=200.15  Aligned_cols=163  Identities=42%  Similarity=0.761  Sum_probs=149.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      +.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999999888888888888888888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC---CCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR---RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      |+|++++.++..+..|+..+......+.|+++|+||+|+.+.   ..+..+++..++...+++++++||+++.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999888776678999999999999654   56777888899999999999999999999999999


Q ss_pred             HHHHHH
Q 028303          162 KTAAKI  167 (210)
Q Consensus       162 ~l~~~~  167 (210)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            988654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=9.5e-33  Score=203.33  Aligned_cols=172  Identities=38%  Similarity=0.723  Sum_probs=153.5

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEE-EEEEEECCE---------EEEEEEEecCCcchhhhhh
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG-ARMVTIDGR---------PIKLQIWDTAGQESFRSIT   72 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~~   72 (210)
                      +++.++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+.+++.         .+.+.+|||||++.+...+
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            467899999999999999999999999988888888888777 555666655         7899999999999999999


Q ss_pred             HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecC
Q 028303           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR  151 (210)
Q Consensus        73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  151 (210)
                      ..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..+++.+++...+++++++||+
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  167 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA  167 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence            9999999999999999999999999999988877654 679999999999998777778888999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhc
Q 028303          152 TAQNVEEAFIKTAAKILQNIQEG  174 (210)
Q Consensus       152 ~~~~i~~~~~~l~~~~~~~~~~~  174 (210)
                      ++.|++++|++|.+.+.++..+.
T Consensus       168 ~~~~v~~l~~~l~~~~~~~~~~~  190 (195)
T 3bc1_A          168 NGTNISHAIEMLLDLIMKRMERS  190 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999998776553

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-32  Score=205.89  Aligned_cols=171  Identities=47%  Similarity=0.891  Sum_probs=152.6

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            35679999999999999999999999998888888888888888888999889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+ .......+++..++...+++++++||+++.|++++|++
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  175 (213)
T 3cph_A           97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  175 (213)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998888776667999999999999 44556778888899988999999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028303          163 TAAKILQNIQEG  174 (210)
Q Consensus       163 l~~~~~~~~~~~  174 (210)
                      |.+.+.....+.
T Consensus       176 l~~~~~~~~~~~  187 (213)
T 3cph_A          176 LAKLIQEKIDSN  187 (213)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhh
Confidence            999888776443

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=207.62  Aligned_cols=166  Identities=38%  Similarity=0.683  Sum_probs=138.8

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            45679999999999999999999999998888888888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC------CCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA------HRRAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.      ..+.+..+++..++...+++++++||+++.|+
T Consensus       105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv  184 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI  184 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence            999999999999999999988877665679999999999995      34567788889999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          157 EEAFIKTAAKIL  168 (210)
Q Consensus       157 ~~~~~~l~~~~~  168 (210)
                      +++|++|.+.+.
T Consensus       185 ~el~~~l~~~i~  196 (199)
T 2p5s_A          185 VEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999999998775

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=208.93  Aligned_cols=173  Identities=30%  Similarity=0.456  Sum_probs=145.0

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (210)
                      |.....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   97 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH   97 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence            4556789999999999999999999999999888888877666 555666777889999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303           81 GALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  159 (210)
                      ++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  177 (201)
T 3oes_A           98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI  177 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999988876533 57899999999999887888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 028303          160 FIKTAAKILQNIQEG  174 (210)
Q Consensus       160 ~~~l~~~~~~~~~~~  174 (210)
                      |+.|.+.+.......
T Consensus       178 ~~~l~~~i~~~~~~~  192 (201)
T 3oes_A          178 FTKVIQEIARVENSY  192 (201)
T ss_dssp             HHHHHHHHHHC----
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999887665443

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=2.3e-32  Score=199.16  Aligned_cols=168  Identities=33%  Similarity=0.570  Sum_probs=150.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            45699999999999999999999999888888888777665 55778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      +|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  165 (181)
T 2fn4_A           86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ  165 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            999999999999999998888544 3467999999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 028303          163 TAAKILQNIQ  172 (210)
Q Consensus       163 l~~~~~~~~~  172 (210)
                      |.+.+.....
T Consensus       166 l~~~~~~~~~  175 (181)
T 2fn4_A          166 LVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhhc
Confidence            9998876554

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=1e-32  Score=200.69  Aligned_cols=164  Identities=41%  Similarity=0.734  Sum_probs=150.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999999999888888888888888888899988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      |+|++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|.
T Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  172 (179)
T 2y8e_A           93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  172 (179)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999888776666899999999999987777888889999999999999999999999999999998


Q ss_pred             HHHH
Q 028303          165 AKIL  168 (210)
Q Consensus       165 ~~~~  168 (210)
                      +.+.
T Consensus       173 ~~~~  176 (179)
T 2y8e_A          173 AALP  176 (179)
T ss_dssp             HTCC
T ss_pred             HHHh
Confidence            7653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=198.82  Aligned_cols=168  Identities=32%  Similarity=0.444  Sum_probs=136.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch--hhhhhHHhhccccE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--FRSITRSYYRGAAG   81 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~   81 (210)
                      ++.++|+|+|++|+|||||+++|.+..+...+. +.+.+.....+.+++..+.+.+|||||++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            457999999999999999999999988765544 346666667778899889999999999987  56677888999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      +++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999988887653 2578999999999998877788888889998899999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028303          161 IKTAAKILQNIQ  172 (210)
Q Consensus       161 ~~l~~~~~~~~~  172 (210)
                      ++|.+.+..+..
T Consensus       161 ~~l~~~~~~~~~  172 (175)
T 2nzj_A          161 EGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhc
Confidence            999998876544

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=2.6e-32  Score=198.72  Aligned_cols=167  Identities=19%  Similarity=0.305  Sum_probs=141.5

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (210)
                      |...+.+||+|+|++|+|||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++.     ..+++.+|
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d   74 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD   74 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence            666778999999999999999999999998876 566666444 55677888899999999999876     46778899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEecCCCC
Q 028303           81 GALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLA--HRRAVSKEEGEQFAKEN-GLLFLEASARTAQ  154 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~  154 (210)
                      ++|+|||++++.++..+..|+..+.....   .+.|+++|+||+|+.  ..+.+..+++.+++... +++++++||+++.
T Consensus        75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (178)
T 2iwr_A           75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL  154 (178)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence            99999999999999999997766654432   578999999999994  45667888899988876 6899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhc
Q 028303          155 NVEEAFIKTAAKILQNIQEG  174 (210)
Q Consensus       155 ~i~~~~~~l~~~~~~~~~~~  174 (210)
                      |++++|+.|.+.+.....+.
T Consensus       155 ~i~~lf~~l~~~~~~~~~~~  174 (178)
T 2iwr_A          155 NVDRVFQEVAQKVVTLRKQQ  174 (178)
T ss_dssp             THHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhh
Confidence            99999999999998776554

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=3.6e-32  Score=197.66  Aligned_cols=166  Identities=37%  Similarity=0.678  Sum_probs=146.1

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            35679999999999999999999999998888888888888888888999889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCeEEEEecCCCCCHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQNVE  157 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~  157 (210)
                      ++|||++++.++..+..|+..+.....    .+.|+++|+||+|+. ......+++.+++. ..+++++++||+++.|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  162 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999988876543    578999999999997 45667788888888 567899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQ  169 (210)
Q Consensus       158 ~~~~~l~~~~~~  169 (210)
                      ++|++|.+.+..
T Consensus       163 ~l~~~l~~~~~~  174 (177)
T 1wms_A          163 AAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=5.6e-32  Score=198.51  Aligned_cols=168  Identities=33%  Similarity=0.579  Sum_probs=145.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            569999999999999999999999998777777754 4444557788999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....+++..++...+++++++||+++.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  160 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL  160 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999988877543 5799999999999974 4567788899999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 028303          164 AAKILQNIQEG  174 (210)
Q Consensus       164 ~~~~~~~~~~~  174 (210)
                      .+.+.....+.
T Consensus       161 ~~~~~~~~~~~  171 (189)
T 4dsu_A          161 VREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhhhhc
Confidence            99988776554

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.6e-33  Score=210.93  Aligned_cols=169  Identities=33%  Similarity=0.619  Sum_probs=143.8

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (210)
                      |...+.++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus         4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   82 (212)
T 2j0v_A            4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD   82 (212)
T ss_dssp             CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred             CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence            6666789999999999999999999999988877777776555 344667888889999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCCC--------CCHHHHHHHHHHcCC-eEEEEec
Q 028303           81 GALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRA--------VSKEEGEQFAKENGL-LFLEASA  150 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~sa  150 (210)
                      ++|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+...        +..+++..++...++ +++++||
T Consensus        83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (212)
T 2j0v_A           83 IFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS  161 (212)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence            999999999999999987 7888877654 4789999999999865432        367888889988886 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH
Q 028303          151 RTAQNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       151 ~~~~~i~~~~~~l~~~~~~~~  171 (210)
                      +++.|++++|++|++.+....
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          162 KTQQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             TTCTTHHHHHHHHHHHHHCC-
T ss_pred             CCCCCHHHHHHHHHHHHhhhh
Confidence            999999999999999887543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.9e-32  Score=201.59  Aligned_cols=165  Identities=42%  Similarity=0.787  Sum_probs=147.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh-hhhHHhhccccEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-SITRSYYRGAAGA   82 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~   82 (210)
                      ...+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+. .++..+++.+|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            456999999999999999999999999888888888888888888899988999999999999988 8899999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCC---CCHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA---QNVEE  158 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~---~~i~~  158 (210)
                      |+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++   .++.+
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~  177 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  177 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence            99999999999999999998887765 467999999999999877778888899999999999999999999   99999


Q ss_pred             HHHHHHHHHH
Q 028303          159 AFIKTAAKIL  168 (210)
Q Consensus       159 ~~~~l~~~~~  168 (210)
                      +|++|.+.+.
T Consensus       178 l~~~l~~~i~  187 (189)
T 1z06_A          178 IFMTLAHKLK  187 (189)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1.5e-32  Score=198.21  Aligned_cols=164  Identities=27%  Similarity=0.406  Sum_probs=133.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh-hhHHhhccccEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-ITRSYYRGAAGALL   84 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~   84 (210)
                      .+||+|+|++|+|||||+++|.+.........+.+.+.....+.+++..+.+.+||+||++.+.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998877766666667777777788999999999999999998876 77788899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999998877654 479999999999998778889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028303          164 AAKILQ  169 (210)
Q Consensus       164 ~~~~~~  169 (210)
                      .+.+..
T Consensus       162 ~~~i~~  167 (169)
T 3q85_A          162 VRQIRL  167 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988765

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=9.6e-33  Score=204.44  Aligned_cols=166  Identities=28%  Similarity=0.394  Sum_probs=142.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh-hhHHhhccccEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-ITRSYYRGAAGA   82 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~   82 (210)
                      +..+||+|+|++|+|||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.+|++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            5679999999999999999999976544333344445556666678899999999999999987765 778889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      |+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus       101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~  180 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE  180 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHH
Confidence            999999999999999999988876543 5799999999999988778888999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028303          162 KTAAKILQ  169 (210)
Q Consensus       162 ~l~~~~~~  169 (210)
                      .|++.+..
T Consensus       181 ~l~~~i~~  188 (195)
T 3cbq_A          181 GAVRQIRL  188 (195)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99988754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=202.43  Aligned_cols=163  Identities=33%  Similarity=0.493  Sum_probs=141.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..+ ..+++.+|+++
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            46799999999999999999999999988888888776663 44678888999999999999988775 67889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEec-CCCCCHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA-RTAQNVEEA  159 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa-~~~~~i~~~  159 (210)
                      +|||++++.++..+..|+..+.....   .+.|+++|+||+|+.+.+.+..+++.+++...+++++++|| +++.|++++
T Consensus        97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~l  176 (187)
T 3c5c_A           97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV  176 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHH
Confidence            99999999999999999988876532   57899999999999877778889999999999999999999 899999999


Q ss_pred             HHHHHHHHH
Q 028303          160 FIKTAAKIL  168 (210)
Q Consensus       160 ~~~l~~~~~  168 (210)
                      |+.|.+.+.
T Consensus       177 f~~l~~~i~  185 (187)
T 3c5c_A          177 FHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998775

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.7e-32  Score=201.18  Aligned_cols=169  Identities=37%  Similarity=0.508  Sum_probs=147.2

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (210)
                      |.....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|
T Consensus        23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d  100 (196)
T 2atv_A           23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGE  100 (196)
T ss_dssp             ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCS
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCC
Confidence            4445679999999999999999999999998888888776655 44467888889999999999988 778889999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCC-CHHH
Q 028303           81 GALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEE  158 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~  158 (210)
                      ++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++. |+++
T Consensus       101 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~  180 (196)
T 2atv_A          101 GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITE  180 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHH
Confidence            99999999999999999999888876543 589999999999998777788899999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          159 AFIKTAAKILQNI  171 (210)
Q Consensus       159 ~~~~l~~~~~~~~  171 (210)
                      +|++|.+.+.+..
T Consensus       181 l~~~l~~~i~~~~  193 (196)
T 2atv_A          181 IFYELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=7.3e-33  Score=201.50  Aligned_cols=167  Identities=36%  Similarity=0.548  Sum_probs=146.0

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC-EEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      ..+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            35679999999999999999999999888766667777777777788876 67899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC--CCCe-EEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHAN--PNMS-IMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  158 (210)
                      +|+|||++++.++..+..|+..+.....  .+.| +++|+||+|+.+.+.+..+++..++...+++++++||+++.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999888766432  2345 889999999987777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028303          159 AFIKTAAKILQ  169 (210)
Q Consensus       159 ~~~~l~~~~~~  169 (210)
                      +|++|.+.+..
T Consensus       163 l~~~l~~~~~~  173 (178)
T 2hxs_A          163 CFQKVAAEILG  173 (178)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999887743

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=4e-32  Score=200.60  Aligned_cols=166  Identities=28%  Similarity=0.520  Sum_probs=146.4

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      ....+||+|+|++|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            4567999999999999999999999999888888887776664 467888999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCCC--CCCCHHHHHHHHHHcCCe-EEEEecCCCCCHHH
Q 028303           83 LLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR--RAVSKEEGEQFAKENGLL-FLEASARTAQNVEE  158 (210)
Q Consensus        83 i~V~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~  158 (210)
                      |+|||++++.++..+ ..|+..+... ..+.|+++|+||+|+.+.  ..+..+++..++...++. ++++||+++.|+++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE  177 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence            999999999999997 5677777654 357899999999999753  667888999999999988 99999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          159 AFIKTAAKILQN  170 (210)
Q Consensus       159 ~~~~l~~~~~~~  170 (210)
                      +|++|.+.+...
T Consensus       178 l~~~l~~~i~~~  189 (194)
T 3reg_A          178 VFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhc
Confidence            999999887654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=9.6e-32  Score=197.27  Aligned_cols=162  Identities=19%  Similarity=0.337  Sum_probs=141.7

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      ....+||+|+|++|+|||||+++|++..+...+.++ ...+ ...+.+++..+.+.+|||+|++.+.     +++.+|++
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence            346799999999999999999999999988777776 3333 4667889999999999999998776     77889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLA--HRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEE  158 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~  158 (210)
                      ++|||++++.++..+..|+..+..... .+.|+++|+||+|+.  ..+.+..+++.+++...+ ++++++||+++.|+++
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~  169 (184)
T 3ihw_A           90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVER  169 (184)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHH
Confidence            999999999999999999999877643 578999999999994  456788889999999986 8999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          159 AFIKTAAKILQNI  171 (210)
Q Consensus       159 ~~~~l~~~~~~~~  171 (210)
                      +|++|.+.+....
T Consensus       170 lf~~l~~~i~~~~  182 (184)
T 3ihw_A          170 VFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.3e-32  Score=198.62  Aligned_cols=165  Identities=50%  Similarity=0.859  Sum_probs=149.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            46999999999999999999999999988888888888888888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ..+..+++..++...+++++++||+++.|++++|++|
T Consensus        94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  172 (195)
T 1x3s_A           94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  172 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999888876543 5789999999999943 4567788899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028303          164 AAKILQN  170 (210)
Q Consensus       164 ~~~~~~~  170 (210)
                      .+.+.+.
T Consensus       173 ~~~~~~~  179 (195)
T 1x3s_A          173 VEKIIQT  179 (195)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHhh
Confidence            9988753

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=5e-32  Score=194.82  Aligned_cols=163  Identities=36%  Similarity=0.558  Sum_probs=143.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+.... ..+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            3689999999999999999999999887777777665553 446788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999888877654 579999999999998777788889999999999999999999999999999999


Q ss_pred             HHHHH
Q 028303          164 AAKIL  168 (210)
Q Consensus       164 ~~~~~  168 (210)
                      .+.+.
T Consensus       162 ~~~i~  166 (168)
T 1u8z_A          162 MREIR  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=2.8e-33  Score=208.58  Aligned_cols=174  Identities=29%  Similarity=0.488  Sum_probs=116.5

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCceeEEEEEEEEECCE--EEEEEEEecCCcchhhhhhHHhh
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTIDGR--PIKLQIWDTAGQESFRSITRSYY   76 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~   76 (210)
                      |+....++|+|+|++|+|||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.+|||||++.+...+..++
T Consensus        15 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   94 (208)
T 2yc2_C           15 ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYW   94 (208)
T ss_dssp             CSEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTC
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHH
Confidence            34456799999999999999999999998  777777778777777777888876  88999999999999999999999


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEecCCCCC-CCCCCHHHHHHHHHHcCCeEEEEecCC
Q 028303           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAH-RRAVSKEEGEQFAKENGLLFLEASART  152 (210)
Q Consensus        77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~  152 (210)
                      +.+|++|+|||++++.++..+..|+..+.....   .+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++
T Consensus        95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  174 (208)
T 2yc2_C           95 NGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANP  174 (208)
T ss_dssp             CCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC--
T ss_pred             hhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCC
Confidence            999999999999999999999999999887765   5899999999999987 677888999999999999999999999


Q ss_pred             -CCCHHHHHHHHHHHHHHHHhhc
Q 028303          153 -AQNVEEAFIKTAAKILQNIQEG  174 (210)
Q Consensus       153 -~~~i~~~~~~l~~~~~~~~~~~  174 (210)
                       +.|++++|++|.+.+.+...+.
T Consensus       175 ~~~gi~~l~~~i~~~~~~~~~~~  197 (208)
T 2yc2_C          175 PGKDADAPFLSIATTFYRNYEDK  197 (208)
T ss_dssp             -----CHHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHhh
Confidence             9999999999999988776654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=1e-31  Score=196.68  Aligned_cols=167  Identities=35%  Similarity=0.541  Sum_probs=149.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   95 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence            569999999999999999999999988777777766555 3446788888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  175 (187)
T 2a9k_A           96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL  175 (187)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999888877654 579999999999998777788889999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 028303          164 AAKILQNIQ  172 (210)
Q Consensus       164 ~~~~~~~~~  172 (210)
                      .+.+.++..
T Consensus       176 ~~~i~~~~~  184 (187)
T 2a9k_A          176 MREIRARKM  184 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            999876554

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1.4e-32  Score=200.50  Aligned_cols=169  Identities=36%  Similarity=0.650  Sum_probs=134.9

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            4568999999999999999999999999888888887777777777776 556789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCC-CCCCCHHHHHHHHH-HcCCeEEEEecCCCCC
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAH-RRAVSKEEGEQFAK-ENGLLFLEASARTAQN  155 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~  155 (210)
                      +|+|||++++.++..+..|+..+.....    .+.|+++|+||+|+.+ ...+..+++..++. ..+.+++++||+++.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            9999999999999999999988876543    5789999999999954 34567788888888 4678899999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 028303          156 VEEAFIKTAAKILQNI  171 (210)
Q Consensus       156 i~~~~~~l~~~~~~~~  171 (210)
                      ++++|++|.+.+.++.
T Consensus       165 i~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          165 VDTAFEEIARSALQQN  180 (182)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999887654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-32  Score=203.34  Aligned_cols=163  Identities=29%  Similarity=0.441  Sum_probs=141.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            46799999999999999999999999887777777665544 34667888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +|||++++.++..+..|+..+.....  .+.|+++|+||+|+.+ ..+..+++..++..++++++++||+++.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ  163 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence            99999999999999888877766543  3689999999999975 45667888889999999999999999999999999


Q ss_pred             HHHHHHH
Q 028303          162 KTAAKIL  168 (210)
Q Consensus       162 ~l~~~~~  168 (210)
                      +|.+.+.
T Consensus       164 ~l~~~~~  170 (199)
T 2gf0_A          164 ELLTLET  170 (199)
T ss_dssp             HHHHHCS
T ss_pred             HHHHHHh
Confidence            9987664

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=6e-32  Score=194.48  Aligned_cols=161  Identities=37%  Similarity=0.599  Sum_probs=143.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .++|+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            589999999999999999999999888888887766554 4466788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      ||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++... +.+++++||+++.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence            99999999999999988887653 357999999999999877778888899999887 7899999999999999999999


Q ss_pred             HHHH
Q 028303          164 AAKI  167 (210)
Q Consensus       164 ~~~~  167 (210)
                      .+.+
T Consensus       162 ~~~i  165 (167)
T 1c1y_A          162 VRQI  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8876

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=6.8e-32  Score=193.94  Aligned_cols=162  Identities=33%  Similarity=0.550  Sum_probs=144.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .++|+|+|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999988877777765444 55677888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      ||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence            999999999999999888876543 5799999999999987777888889999999999999999999999999999998


Q ss_pred             HHHH
Q 028303          165 AKIL  168 (210)
Q Consensus       165 ~~~~  168 (210)
                      +.+.
T Consensus       162 ~~~~  165 (167)
T 1kao_A          162 RQMN  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=5.1e-32  Score=194.89  Aligned_cols=163  Identities=28%  Similarity=0.412  Sum_probs=123.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+|+|++|+|||||+++|.+...... .++.+.++ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999997765433 33334444 34567889999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      ||++++.++..+..|+..+.... ..+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999998887653 35799999999999988888889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028303          165 AKILQN  170 (210)
Q Consensus       165 ~~~~~~  170 (210)
                      +.+..+
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=3.6e-32  Score=204.18  Aligned_cols=168  Identities=24%  Similarity=0.449  Sum_probs=144.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  103 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL  103 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence            35699999999999999999999999998888888877763 44667888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHH-HHHHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEe
Q 028303           84 LVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEAS  149 (210)
Q Consensus        84 ~V~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  149 (210)
                      +|||++++.++.. +..|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++...++ +++++|
T Consensus       104 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  182 (214)
T 3q3j_B          104 LCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS  182 (214)
T ss_dssp             EEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec
Confidence            9999999999998 688988887764 57999999999999653            66888999999999999 999999


Q ss_pred             cCCCCC-HHHHHHHHHHHHHHHHhh
Q 028303          150 ARTAQN-VEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       150 a~~~~~-i~~~~~~l~~~~~~~~~~  173 (210)
                      |+++.| ++++|+.|.+.+......
T Consensus       183 A~~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          183 AFTSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHC----
T ss_pred             cCCCcccHHHHHHHHHHHHhccCcC
Confidence            999998 999999999988765443

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1.2e-31  Score=199.11  Aligned_cols=168  Identities=30%  Similarity=0.510  Sum_probs=138.0

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      ....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF   95 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence            45679999999999999999999999888777777766554 44567888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEE
Q 028303           83 LLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEA  148 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  148 (210)
                      |+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+            ...+..+++..++...+. +++++
T Consensus        96 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  174 (201)
T 2q3h_A           96 LLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC  174 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence            9999999999999987 6888777654 3789999999999965            356777889999988887 89999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHh
Q 028303          149 SARTAQNVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       149 sa~~~~~i~~~~~~l~~~~~~~~~  172 (210)
                      ||+++.|++++|++|.+.+.+...
T Consensus       175 Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          175 SALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             ecCCCCCHHHHHHHHHHHHhcccc
Confidence            999999999999999998876644

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-31  Score=197.61  Aligned_cols=163  Identities=28%  Similarity=0.558  Sum_probs=143.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            4679999999999999999999999988877777766555 344667777889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEe
Q 028303           84 LVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEAS  149 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  149 (210)
                      +|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++...++ +++++|
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  173 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS  173 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence            999999999999987 7888877654 37899999999999753            46778889999998887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 028303          150 ARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       150 a~~~~~i~~~~~~l~~~~~  168 (210)
                      |+++.|++++|++|.+.++
T Consensus       174 a~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          174 ALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998775

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-31  Score=200.85  Aligned_cols=167  Identities=27%  Similarity=0.364  Sum_probs=138.6

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCC--CCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch-hhhhhHHhhccc
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSITRSYYRGA   79 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~   79 (210)
                      .++.+||+|+|++|+|||||+++|.+...  ...+ ++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            45679999999999999999999996433  3333 3345566667778899999999999999876 455667778899


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303           80 AGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (210)
Q Consensus        80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  158 (210)
                      |++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|+++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999988776542 24799999999999987677888888888888899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          159 AFIKTAAKILQN  170 (210)
Q Consensus       159 ~~~~l~~~~~~~  170 (210)
                      +|+.|.+.+...
T Consensus       193 lf~~l~~~i~~~  204 (211)
T 2g3y_A          193 LFEGIVRQVRLR  204 (211)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=1.5e-31  Score=196.08  Aligned_cols=165  Identities=27%  Similarity=0.500  Sum_probs=142.2

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            467899999999999999999999999988877888766653 3467788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEE
Q 028303           83 LLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEA  148 (210)
Q Consensus        83 i~V~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  148 (210)
                      |+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.            +.++.+++..++..++ ++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 67887776653 47899999999999642            5577888999998877 789999


Q ss_pred             ecC-CCCCHHHHHHHHHHHHHH
Q 028303          149 SAR-TAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       149 sa~-~~~~i~~~~~~l~~~~~~  169 (210)
                      ||+ ++.|++++|+.|.+.++.
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eecCCCcCHHHHHHHHHHHHhc
Confidence            999 689999999999988763

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=100.00  E-value=1.3e-30  Score=193.34  Aligned_cols=174  Identities=52%  Similarity=0.876  Sum_probs=153.4

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      ++++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus         1 m~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~   80 (199)
T 2f9l_A            1 MYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG   80 (199)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred             CCcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCE
Confidence            35778999999999999999999999999888888888888888888899999999999999999999899999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +++|+|+++..++.++..|+..+......+.|+++++||+|+.+......++++.++...++.++++|++++.+++++|+
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~  160 (199)
T 2f9l_A           81 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK  160 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999988888877665555789999999999987677778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 028303          162 KTAAKILQNIQEGA  175 (210)
Q Consensus       162 ~l~~~~~~~~~~~~  175 (210)
                      .|.+.+.....+..
T Consensus       161 ~l~~~~~~~~~~~~  174 (199)
T 2f9l_A          161 NILTEIYRIVSQKQ  174 (199)
T ss_dssp             HHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999987765443

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-31  Score=198.12  Aligned_cols=164  Identities=27%  Similarity=0.510  Sum_probs=142.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      +..+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            56799999999999999999999999988877888776653 44667888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEEe
Q 028303           84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENG-LLFLEAS  149 (210)
Q Consensus        84 ~V~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~s  149 (210)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+            .+.+..+++..++...+ ++++++|
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  183 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  183 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence            99999999999998 67888776654 4789999999999964            24577888999998877 6899999


Q ss_pred             cC-CCCCHHHHHHHHHHHHHH
Q 028303          150 AR-TAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       150 a~-~~~~i~~~~~~l~~~~~~  169 (210)
                      |+ ++.|++++|+.|.+.++.
T Consensus       184 Ak~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          184 ALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHH
T ss_pred             eccCCcCHHHHHHHHHHHHhh
Confidence            99 689999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=6e-31  Score=189.99  Aligned_cols=162  Identities=31%  Similarity=0.455  Sum_probs=141.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+.++. ..+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            4689999999999999999999998887777777665543 345678888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      |+|++++.++..+..|+..+.....  .+.|+++|+||+|+.+.+.+...++..++...+++++++||+++.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999999888887766532  47899999999999877777888888899988999999999999999999999


Q ss_pred             HHHHH
Q 028303          163 TAAKI  167 (210)
Q Consensus       163 l~~~~  167 (210)
                      |.+.+
T Consensus       161 l~~~~  165 (172)
T 2erx_A          161 LLNLE  165 (172)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.98  E-value=3.4e-30  Score=184.72  Aligned_cols=161  Identities=34%  Similarity=0.596  Sum_probs=141.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .++|+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            58999999999999999999999988777777755444 44567888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      ||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....+++.+++...+++++++|++++.|+++++++|.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999888876653 4799999999999976 45667888899999999999999999999999999999


Q ss_pred             HHHH
Q 028303          165 AKIL  168 (210)
Q Consensus       165 ~~~~  168 (210)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T 2ce2_X          161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8774

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.98  E-value=2.6e-30  Score=190.12  Aligned_cols=165  Identities=35%  Similarity=0.595  Sum_probs=134.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   98 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence            458999999999999999999999988777777655444 4456788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+.. .....+++++++...+++++++||+++.|++++|++|
T Consensus        99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  177 (190)
T 3con_A           99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL  177 (190)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999888876543 5789999999999976 4567788999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028303          164 AAKILQNI  171 (210)
Q Consensus       164 ~~~~~~~~  171 (210)
                      .+.+.+..
T Consensus       178 ~~~~~~~~  185 (190)
T 3con_A          178 VREIRQYR  185 (190)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99887643

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.98  E-value=1.1e-30  Score=191.03  Aligned_cols=162  Identities=31%  Similarity=0.602  Sum_probs=141.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            468999999999999999999999988777777766554 3446788899999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEec
Q 028303           85 VYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASA  150 (210)
Q Consensus        85 V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa  150 (210)
                      |||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++...+. +++++||
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence            99999999999987 6877776654 37899999999998653            46677888899998887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 028303          151 RTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       151 ~~~~~i~~~~~~l~~~~~  168 (210)
                      +++.|++++|++|.+.+.
T Consensus       162 ~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          162 LTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCccCHHHHHHHHHHHHh
Confidence            999999999999988775

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.98  E-value=1.4e-30  Score=193.44  Aligned_cols=164  Identities=32%  Similarity=0.576  Sum_probs=142.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+|+|++|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            457999999999999999999999999888777776666543 3678888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEe
Q 028303           84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEAS  149 (210)
Q Consensus        84 ~V~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  149 (210)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++...+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999998 56777776543 47899999999999764            45777888999998887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 028303          150 ARTAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       150 a~~~~~i~~~~~~l~~~~~~  169 (210)
                      |+++.|++++|++|.+.+++
T Consensus       181 A~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999988753

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=1.6e-30  Score=194.12  Aligned_cols=164  Identities=29%  Similarity=0.561  Sum_probs=137.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+|+|++|+|||||+++|.+..+...+.++.+..+... +.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            4578999999999999999999999998877777766665544 678888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEe
Q 028303           84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEAS  149 (210)
Q Consensus        84 ~V~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  149 (210)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++...+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999988 56777776543 47899999999999654            45677888889988887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 028303          150 ARTAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       150 a~~~~~i~~~~~~l~~~~~~  169 (210)
                      |+++.|++++|++|.+.++.
T Consensus       181 A~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.98  E-value=8.6e-31  Score=196.57  Aligned_cols=164  Identities=30%  Similarity=0.589  Sum_probs=122.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            469999999999999999999999888777777765444 4456788889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEec
Q 028303           85 VYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASA  150 (210)
Q Consensus        85 V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa  150 (210)
                      |||++++.++..+. .|+..+.... .+.|+++|+||+|+...            +.+..+++..++...++ +++++||
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  190 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA  190 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence            99999999999987 6877776654 47899999999999654            25677888999999887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 028303          151 RTAQNVEEAFIKTAAKILQN  170 (210)
Q Consensus       151 ~~~~~i~~~~~~l~~~~~~~  170 (210)
                      +++.|++++|+.|.+.+.+.
T Consensus       191 ~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          191 RLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             TTTBSHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999988754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.98  E-value=1.9e-31  Score=200.36  Aligned_cols=170  Identities=31%  Similarity=0.484  Sum_probs=146.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC-EEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +..+||+|+|++|+|||||+++|++..+...+.++.+.+.....+...+ ..+.+.+|||||++.+..++..+++.+|++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA   88 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence            4679999999999999999999999888877777777777666655543 347899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  168 (218)
T 4djt_A           89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH  168 (218)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999998877667999999999999887778888888999889999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 028303          163 TAAKILQNIQE  173 (210)
Q Consensus       163 l~~~~~~~~~~  173 (210)
                      |.+.+......
T Consensus       169 l~~~~~~~~~~  179 (218)
T 4djt_A          169 LARIFTGRPDL  179 (218)
T ss_dssp             HHHHHHCCTTC
T ss_pred             HHHHHhccccc
Confidence            99988665433

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.98  E-value=5.4e-32  Score=197.54  Aligned_cols=166  Identities=31%  Similarity=0.611  Sum_probs=125.8

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (210)
                      |...+.+||+|+|++|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   81 (182)
T 3bwd_D            3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (182)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC-CCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE-EEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence            556678999999999999999999999998877777765544332 2445666778899999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCCC----------CCHHHHHHHHHHcCC-eEEEE
Q 028303           81 GALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRA----------VSKEEGEQFAKENGL-LFLEA  148 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~  148 (210)
                      ++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+...          +..+++..++...+. +++++
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  160 (182)
T 3bwd_D           82 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC  160 (182)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence            999999999999999987 6888777654 3789999999999865433          467888889988886 89999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028303          149 SARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       149 sa~~~~~i~~~~~~l~~~~~  168 (210)
                      ||+++.|++++|+.|.+.++
T Consensus       161 Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          161 SSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CTTTCTTHHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHHHh
Confidence            99999999999999988764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.98  E-value=1.3e-31  Score=197.83  Aligned_cols=168  Identities=20%  Similarity=0.262  Sum_probs=135.3

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------CCCceeEEEEEEE-EECCEEEEEEEEecCCcchhh
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------DLTIGVEFGARMV-TIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      ..++.+||+|+|++|+|||||++.+.+. +...+           .++.+.++....+ .+++..+.+.+|||||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            3467899999999999999999766654 33332           2343444443333 456778899999999999999


Q ss_pred             hhhHHhhccccEEEEEEECC------ChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC
Q 028303           70 SITRSYYRGAAGALLVYDIT------RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL  143 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  143 (210)
                      .++..+++.+|++|+|||++      +..++..+..|+..+. ....+.|+++|+||+|+.+  ....+++.+++...++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~  165 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGK  165 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCC
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCC
Confidence            99999999999999999999      4566777777776662 2235799999999999976  3778889999999998


Q ss_pred             -eEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303          144 -LFLEASARTAQNVEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       144 -~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~  173 (210)
                       +++++||+++.|++++|++|.+.+.+...+
T Consensus       166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence             999999999999999999999999887654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=8.2e-34  Score=210.64  Aligned_cols=166  Identities=52%  Similarity=0.943  Sum_probs=141.2

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      .++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            35789999999999999999999999888887778888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~  189 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  189 (199)
T ss_dssp             EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999987776668999999999999877777777788899999999999999999999999999


Q ss_pred             HHHHHH
Q 028303          163 TAAKIL  168 (210)
Q Consensus       163 l~~~~~  168 (210)
                      |.+.+.
T Consensus       190 l~~~l~  195 (199)
T 3l0i_B          190 MAAEIK  195 (199)
T ss_dssp             HTTTTT
T ss_pred             HHHHHH
Confidence            987664

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=4.1e-30  Score=189.83  Aligned_cols=167  Identities=27%  Similarity=0.378  Sum_probs=136.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCC--CCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch-hhhhhHHhhcccc
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSITRSYYRGAA   80 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d   80 (210)
                      ++.+||+|+|++|+|||||+++|.+..  +...+ ++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            457999999999999999999999643  33333 3345566666778899999999999999876 4556777888999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303           81 GALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  159 (210)
                      ++++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988776653 357899999999999776677888888888888899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          160 FIKTAAKILQNI  171 (210)
Q Consensus       160 ~~~l~~~~~~~~  171 (210)
                      |+.|.+.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999886544

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=2e-30  Score=193.22  Aligned_cols=162  Identities=30%  Similarity=0.566  Sum_probs=137.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+|+|++|+|||||+++|.+..+...+.++.+.. ....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE-EEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce-eEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            356999999999999999999999998887777776543 4445677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEEe
Q 028303           84 LVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENGL-LFLEAS  149 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  149 (210)
                      +|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+..            .+..+++..++...+. +++++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            999999999999987 6777776654 578999999999986543            3677888899998886 599999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 028303          150 ARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       150 a~~~~~i~~~~~~l~~~~  167 (210)
                      |+++.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=1.1e-30  Score=196.84  Aligned_cols=164  Identities=30%  Similarity=0.589  Sum_probs=145.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+|+|++|+|||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   92 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   92 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence            46799999999999999999998877777777788888888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      +|||++++.++..+..|+..+.... .+.|+++|+||+|+.+....  .+...++...+++++++||+++.|++++|++|
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  169 (221)
T 3gj0_A           93 IMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  169 (221)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999887764 47899999999999764432  35666788889999999999999999999999


Q ss_pred             HHHHHHH
Q 028303          164 AAKILQN  170 (210)
Q Consensus       164 ~~~~~~~  170 (210)
                      .+.+...
T Consensus       170 ~~~l~~~  176 (221)
T 3gj0_A          170 ARKLIGD  176 (221)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhC
Confidence            9988654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=6e-29  Score=183.40  Aligned_cols=165  Identities=55%  Similarity=0.920  Sum_probs=149.4

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.++++
T Consensus        26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~  105 (191)
T 1oix_A           26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA  105 (191)
T ss_dssp             CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence            45679999999999999999999999999888889989888888899999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      ++|+|+++..+++++..|+..+......+.|+++++||+|+.+......++++.++...++.++++|++++.+++++|+.
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~  185 (191)
T 1oix_A          106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT  185 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999988888888776655557899999999999876677788899999999999999999999999999999


Q ss_pred             HHHHH
Q 028303          163 TAAKI  167 (210)
Q Consensus       163 l~~~~  167 (210)
                      |.+.+
T Consensus       186 l~~~i  190 (191)
T 1oix_A          186 ILTEI  190 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=2.5e-30  Score=191.33  Aligned_cols=163  Identities=15%  Similarity=0.266  Sum_probs=129.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      .+.++|+|+|++|+|||||+++|.+..+.. .+.++.+....  .+  +...+.+.+|||||++.+..++..+++.+|++
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   90 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV   90 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence            467999999999999999999999999887 67777664433  23  34457899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC--------CCCeEEEEEecCCCCCCCCCCHHHHHHH------HHHcCCeEEEE
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHAN--------PNMSIMLVGNKCDLAHRRAVSKEEGEQF------AKENGLLFLEA  148 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~  148 (210)
                      |+|||++++.++..+..|+..+.....        .+.|+++|+||+|+.+..  ..++....      +...+++++++
T Consensus        91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  168 (199)
T 4bas_A           91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFVIFAS  168 (199)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeEEEEe
Confidence            999999999999999988887765421        278999999999997642  22322221      13466789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHh
Q 028303          149 SARTAQNVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       149 sa~~~~~i~~~~~~l~~~~~~~~~  172 (210)
                      ||+++.|++++|++|.+.+.....
T Consensus       169 Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          169 NGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             eCCCccCHHHHHHHHHHHHHHHhc
Confidence            999999999999999998877643

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=3.7e-30  Score=184.73  Aligned_cols=156  Identities=19%  Similarity=0.325  Sum_probs=121.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+|+|++|+|||||+++|.+..+.. +.+|.+.  ....+..  ..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999887754 3445442  2233333  3467999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      |++++.++..+..|+..+.... ..+.|+++|+||+|+.+.  ...++......     ..+++++++||+++.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            9999999999988888776532 257899999999999653  22333332221     134569999999999999999


Q ss_pred             HHHHHHHHH
Q 028303          161 IKTAAKILQ  169 (210)
Q Consensus       161 ~~l~~~~~~  169 (210)
                      ++|.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999887653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=6.6e-29  Score=182.99  Aligned_cols=155  Identities=21%  Similarity=0.255  Sum_probs=126.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+++|++|+|||||+++|.+..+.. +.++.+..  ...+.+++  +.+.+|||||++.+..++..+++.+|++++
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            45799999999999999999999988753 44554543  34556666  778999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEecC
Q 028303           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------------NGLLFLEASAR  151 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa~  151 (210)
                      |+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+  ....+++.+.+..            .+++++++||+
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  174 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV  174 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred             EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence            999999999999999988876542 25799999999999976  4566666665542            34679999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028303          152 TAQNVEEAFIKTAAK  166 (210)
Q Consensus       152 ~~~~i~~~~~~l~~~  166 (210)
                      ++.|++++|++|.+.
T Consensus       175 ~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          175 MRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTBSHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHhh
Confidence            999999999998753

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=1.2e-29  Score=183.18  Aligned_cols=159  Identities=22%  Similarity=0.322  Sum_probs=126.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+|+|++|+|||||+++|.+..+.. +.++.+..  ...+.++  ...+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            356999999999999999999999888754 44454433  3344555  467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~  157 (210)
                      +|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+..  ..++.....     ...+++++++||+++.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            99999999999998888877765432 578999999999996642  223333222     2235679999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQ  169 (210)
Q Consensus       158 ~~~~~l~~~~~~  169 (210)
                      ++|++|.+.+.+
T Consensus       158 ~l~~~l~~~i~~  169 (171)
T 1upt_A          158 EAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999988753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=4e-29  Score=183.72  Aligned_cols=160  Identities=18%  Similarity=0.292  Sum_probs=128.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+.++..  +...  .+.+.+|||||++.+...+..+++.+|++|
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            457999999999999999999999998887777777766543  3333  567899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  157 (210)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+..  ..++......     ..+++++++||+++.|++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            9999999999999998888776542 2579999999999996532  2333322221     234578999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQ  169 (210)
Q Consensus       158 ~~~~~l~~~~~~  169 (210)
                      ++|++|.+.+.+
T Consensus       174 ~l~~~l~~~~~~  185 (188)
T 1zd9_A          174 ITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999886643

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=2.6e-29  Score=186.38  Aligned_cols=155  Identities=23%  Similarity=0.294  Sum_probs=121.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+++|++|+|||||+++|.+..+. .+.+|.+.+  ...+.+++  +.+.+|||||++.+..++..+++.+|++++
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            4589999999999999999999988764 344454443  34456666  678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----------------cCCeEE
Q 028303           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----------------NGLLFL  146 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~  146 (210)
                      |+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+  .+..+++.+++..                 .+++++
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF  176 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence            999999999999999988876542 25799999999999975  5667777777653                 245799


Q ss_pred             EEecCCCCCHHHHHHHHHHH
Q 028303          147 EASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       147 ~~sa~~~~~i~~~~~~l~~~  166 (210)
                      ++||++|.|++++|++|.+.
T Consensus       177 ~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          177 MCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             ECBTTTTBSHHHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.96  E-value=9.4e-29  Score=181.90  Aligned_cols=159  Identities=18%  Similarity=0.274  Sum_probs=128.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCC-CCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      ...++|+|+|++|+|||||+++|.+.. +...+.++.+  .....+.+++  +.+.+|||||++.+...+..+++.+|++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            456999999999999999999999887 4555556655  3344455554  6789999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCC
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQ  154 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~  154 (210)
                      |+|||++++.++..+..|+..+.....   .+.|+++|+||+|+.+  ....+++.+.+.     ..+++++++||+++.
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  172 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGE  172 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence            999999999999999998888776533   4789999999999965  344566666553     235679999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028303          155 NVEEAFIKTAAKIL  168 (210)
Q Consensus       155 ~i~~~~~~l~~~~~  168 (210)
                      |++++|++|.+.+.
T Consensus       173 gi~~l~~~l~~~i~  186 (190)
T 2h57_A          173 GLQEGVDWLQDQIQ  186 (190)
T ss_dssp             THHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.96  E-value=1.2e-28  Score=180.64  Aligned_cols=160  Identities=21%  Similarity=0.303  Sum_probs=128.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+|+|++|+|||||+++|.+.. ...+.++.+..  ...+.++  .+.+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            467999999999999999999999888 55666665643  3344455  467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  157 (210)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+..  ..+++.+...     ..+++++++||+++.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999988888776542 2579999999999997642  3344443332     235679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQN  170 (210)
Q Consensus       158 ~~~~~l~~~~~~~  170 (210)
                      ++|++|.+.+.+.
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1e-28  Score=181.22  Aligned_cols=162  Identities=24%  Similarity=0.346  Sum_probs=124.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+|+|++|+|||||+++|.+..+. .+.++.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999988775 444454432  33344554  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  157 (210)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+  ....+++.+...     ..+++++++||+++.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999988886642 25799999999999965  334455554433     235689999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 028303          158 EAFIKTAAKILQNIQ  172 (210)
Q Consensus       158 ~~~~~l~~~~~~~~~  172 (210)
                      ++|++|.+.+....+
T Consensus       167 ~l~~~l~~~~~~~~~  181 (187)
T 1zj6_A          167 QGLEWMMSRLKIRLE  181 (187)
T ss_dssp             HHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999987654433

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=7.9e-28  Score=191.28  Aligned_cols=163  Identities=31%  Similarity=0.580  Sum_probs=142.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            458999999999999999999999988888777766555 4456788889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEec
Q 028303           85 VYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASA  150 (210)
Q Consensus        85 V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa  150 (210)
                      |||++++.++..+. .|+..+..... +.|+++|+||+|+.+.            ..+..+++..++...++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999987 67777766543 7899999999998543            56778889999999887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 028303          151 RTAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       151 ~~~~~i~~~~~~l~~~~~~  169 (210)
                      +++.|++++|+.|.+.++.
T Consensus       312 ~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999987753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=2.2e-29  Score=185.81  Aligned_cols=158  Identities=18%  Similarity=0.307  Sum_probs=118.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+|+|++|+|||||+++|.+..+.. +.+|.+  .....+...  .+.+.+|||||++.+...+..+++.+|++|
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            457999999999999999999999877653 333433  233334444  467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  157 (210)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+...     ..+++++++||+++.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            9999999999999998888776532 257999999999999653  22333332221     224569999999999999


Q ss_pred             HHHHHHHHHHH
Q 028303          158 EAFIKTAAKIL  168 (210)
Q Consensus       158 ~~~~~l~~~~~  168 (210)
                      ++|++|.+.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999988763

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=1.5e-29  Score=185.38  Aligned_cols=163  Identities=23%  Similarity=0.414  Sum_probs=120.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCceeEEEEEEEEE---CCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTI---DGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (210)
                      .+||+|+|++|+|||||+++|.+.  .+...+.++.+.++....+.+   ++..+.+.+|||+|++.+..++..+++.+|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            579999999999999999999985  455556677777766555443   335678999999999999999999999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC---HHHHHHHHHHcCCe----EEEEecCC
Q 028303           81 GALLVYDITRR-ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS---KEEGEQFAKENGLL----FLEASART  152 (210)
Q Consensus        81 ~~i~V~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~sa~~  152 (210)
                      ++++|||++++ .++..+..|+..+.... .+.|+++|+||+|+.+.....   .+.+..++...+++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999997 57889999998886653 478999999999986543322   22334555556676    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 028303          153 AQ-NVEEAFIKTAAKILQ  169 (210)
Q Consensus       153 ~~-~i~~~~~~l~~~~~~  169 (210)
                      +. +++++++.|.+.+.+
T Consensus       161 ~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          161 ESDALAKLRKTIINESLN  178 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHhc
Confidence            96 888888888776543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=2.5e-28  Score=178.48  Aligned_cols=159  Identities=21%  Similarity=0.303  Sum_probs=123.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      +..++|+++|++|+|||||+++|.+..+. .+.++.+.  ....+.++  .+.+.+|||||++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            46799999999999999999999987542 23344443  23344555  467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  157 (210)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+..  ..+++.+...     ..+++++++||+++.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            9999999999999988887765432 2578999999999997543  2333333221     234579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQ  169 (210)
Q Consensus       158 ~~~~~l~~~~~~  169 (210)
                      ++|++|.+.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=1.6e-28  Score=179.45  Aligned_cols=156  Identities=25%  Similarity=0.346  Sum_probs=123.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+|+|++|+|||||+++|.+..+ ..+.++.+...  ..+.+++  +.+.+|||||++.+...+..+++.+|++|
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   93 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   93 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3569999999999999999999999877 34444444333  3344554  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  157 (210)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+...     ..+++++++||+++.|++
T Consensus        94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  171 (181)
T 2h17_A           94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  171 (181)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999998888776542 257999999999999652  33455544432     234579999999999999


Q ss_pred             HHHHHHHHH
Q 028303          158 EAFIKTAAK  166 (210)
Q Consensus       158 ~~~~~l~~~  166 (210)
                      ++|++|.+.
T Consensus       172 ~l~~~l~~~  180 (181)
T 2h17_A          172 QGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhh
Confidence            999998764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=3.8e-28  Score=177.34  Aligned_cols=161  Identities=22%  Similarity=0.323  Sum_probs=124.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+|+|++|+|||||+++|.+..+ ..+.++.+..  ...+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4679999999999999999999998776 4444554533  33344554  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~  157 (210)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+....     .+++++++||+++.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999999888876543 357999999999999653  334444444322     23479999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQNI  171 (210)
Q Consensus       158 ~~~~~l~~~~~~~~  171 (210)
                      ++|++|.+.+.+++
T Consensus       169 ~l~~~l~~~~~~~q  182 (183)
T 1moz_A          169 EGLDWLIDVIKEEQ  182 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999886543

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=5.9e-31  Score=195.87  Aligned_cols=162  Identities=31%  Similarity=0.593  Sum_probs=135.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4579999999999999999999998888777666655444 334566777888999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEEe
Q 028303           84 LVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENGL-LFLEAS  149 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  149 (210)
                      +|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+..            .+..+++..++...++ +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999998887 6777665543 378999999999996542            4555667778888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 028303          150 ARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       150 a~~~~~i~~~~~~l~~~~  167 (210)
                      |+++.|++++|+.|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998765

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=3.1e-29  Score=184.28  Aligned_cols=159  Identities=19%  Similarity=0.299  Sum_probs=125.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      .+.++|+|+|++|+|||||+++|.+..+.. +.++.+..  ...+.++  .+.+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            467999999999999999999998877643 34454432  3334455  467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~  157 (210)
                      +|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+..  ..++.....     ...+++++++||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            99999999999998888877765432 579999999999996542  223333222     2234579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQ  169 (210)
Q Consensus       158 ~~~~~l~~~~~~  169 (210)
                      ++|++|.+.+.+
T Consensus       173 ~l~~~l~~~i~~  184 (189)
T 2x77_A          173 EGMDWLVERLRE  184 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=1.8e-28  Score=181.44  Aligned_cols=161  Identities=24%  Similarity=0.301  Sum_probs=120.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCcchhhhhh---HHhhccc
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSIT---RSYYRGA   79 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~---~~~~~~~   79 (210)
                      ++.+||+|+|++|+|||||++++.+... .........+.......+. +..+.+.+|||||++.+....   ..+++.+
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   96 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT   96 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence            4679999999999999999998887532 2222211222222222332 566789999999999987776   8999999


Q ss_pred             cEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC-------CCCCCHHHHHHHHH----HcCCeEE
Q 028303           80 AGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-------RRAVSKEEGEQFAK----ENGLLFL  146 (210)
Q Consensus        80 d~~i~V~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~----~~~~~~~  146 (210)
                      |++|+|||++++  +++..+..|+..+... ..+.|+++|+||+|+.+       .+.+..+++..++.    ..+++++
T Consensus        97 ~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  175 (196)
T 3llu_A           97 GALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFY  175 (196)
T ss_dssp             SEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred             CEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceE
Confidence            999999999997  6667777777766433 35799999999999854       23344455667777    6678999


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q 028303          147 EASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       147 ~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      ++||++ .|++++|+.|++.+
T Consensus       176 e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          176 LTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EECTTS-THHHHHHHHHHHHT
T ss_pred             EEEech-hhHHHHHHHHHHHh
Confidence            999999 99999999998765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=3e-27  Score=170.20  Aligned_cols=153  Identities=21%  Similarity=0.204  Sum_probs=114.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh------hhhHHhhc--
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------SITRSYYR--   77 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--   77 (210)
                      .++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||++.+.      .+...+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            48999999999999999999998766544444444444555555665  468899999988764      34455654  


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (210)
Q Consensus        78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  157 (210)
                      .+|++++|+|+++.+.   ...|+..+..   .+.|+++|+||+|+.+...+.. ++..++...+++++++||+++.|++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            8999999999998643   3446655544   2689999999999865433332 3667777888999999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          158 EAFIKTAAKI  167 (210)
Q Consensus       158 ~~~~~l~~~~  167 (210)
                      ++|++|.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=1.4e-27  Score=178.86  Aligned_cols=158  Identities=16%  Similarity=0.211  Sum_probs=114.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCE-EEEEEEEecCCcchhhh-hhHHhhccccE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-PIKLQIWDTAGQESFRS-ITRSYYRGAAG   81 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~   81 (210)
                      ...++|+|+|++|+|||||+++|++..+...+.++ +.....  +.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            45799999999999999999999999887766543 333333  555543 57899999999999988 78889999999


Q ss_pred             EEEEEECCChh-hHHHHHHHHHHH-Hhh--cCCCCeEEEEEecCCCCCCCCCCHHHHHH----HHH--------------
Q 028303           82 ALLVYDITRRE-TFNHLSSWLEDA-RQH--ANPNMSIMLVGNKCDLAHRRAVSKEEGEQ----FAK--------------  139 (210)
Q Consensus        82 ~i~V~d~~~~~-s~~~~~~~~~~~-~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~--------------  139 (210)
                      +|+|||+++.. ++.....++..+ ...  ...+.|+++|+||+|+.+...  .++..+    ...              
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~s~~~  159 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--AKLIQQQLEKELNTLRVTRSAAPSTLD  159 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--HHHHHHHHHHHHHHHHHHCC-------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--HHHHHHHHHHHHHHHhccchhcccccc
Confidence            99999999854 455555544433 321  235789999999999975432  121111    111              


Q ss_pred             -------------------Hc--CCeEEEEecCCC------CCHHHHHHHHHHH
Q 028303          140 -------------------EN--GLLFLEASARTA------QNVEEAFIKTAAK  166 (210)
Q Consensus       140 -------------------~~--~~~~~~~sa~~~------~~i~~~~~~l~~~  166 (210)
                                         ..  .++|+++||+++      .|++++|++|.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                               11  567999999999      9999999999875

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=1.2e-26  Score=175.48  Aligned_cols=169  Identities=18%  Similarity=0.101  Sum_probs=118.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc------chh---hhhhHH
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ------ESF---RSITRS   74 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~---~~~~~~   74 (210)
                      ...++|+|+|++|+|||||+++|++..+.....+..+.+.....+...+  ..+.+|||||+      +..   ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            3569999999999999999999998876432222223333333333443  57899999998      331   112334


Q ss_pred             hhccccEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH---HHHHHHHHcC--CeEEE
Q 028303           75 YYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE---EGEQFAKENG--LLFLE  147 (210)
Q Consensus        75 ~~~~~d~~i~V~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~  147 (210)
                      ++..+|++|+|||++++.++.  ....|+..+... ..+.|+++|+||+|+.+...+..+   .+..++...+  +++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            577889999999999987754  223445444432 137899999999999876666544   4556666666  88999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHHhhcc
Q 028303          148 ASARTAQNVEEAFIKTAAKILQNIQEGA  175 (210)
Q Consensus       148 ~sa~~~~~i~~~~~~l~~~~~~~~~~~~  175 (210)
                      +||+++.|++++|++|.+.+.+...+..
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~~~~~~  211 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKNDQAESI  211 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987765543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=5.7e-27  Score=170.23  Aligned_cols=160  Identities=19%  Similarity=0.186  Sum_probs=120.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      +..++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++.  .+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            46789999999999999999999999887776666665665556667764  4679999999999999889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEecCCCC
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG---------LLFLEASARTAQ  154 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~~~  154 (210)
                      +|+|++++...... .++..+   ...+.|+++|+||+|+.+.   ..++.........         ++++++||+++.
T Consensus        84 ~v~d~~~~~~~~~~-~~l~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (178)
T 2lkc_A           84 LVVAADDGVMPQTV-EAINHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE  156 (178)
T ss_dssp             EEEETTCCCCHHHH-HHHHHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred             EEEECCCCCcHHHH-HHHHHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence            99999884322222 112222   2247899999999999653   2333433333221         479999999999


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q 028303          155 NVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       155 ~i~~~~~~l~~~~~~~~~  172 (210)
                      |++++|++|.+.+.....
T Consensus       157 gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          157 GLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             HHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHhhhhhcc
Confidence            999999999887765433

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.94  E-value=4.3e-28  Score=186.55  Aligned_cols=164  Identities=27%  Similarity=0.419  Sum_probs=120.9

Q ss_pred             CCceEEEEEEcCC---------CCCHHHHHHHHHh---CCCCCCCCCCc-eeEEEEEE--------------EEECCEEE
Q 028303            3 YDYLFKYIIIGDT---------GVGKSCLLLQFTD---KRFQPVHDLTI-GVEFGARM--------------VTIDGRPI   55 (210)
Q Consensus         3 ~~~~~~i~v~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~   55 (210)
                      ..+.+||+|+|.+         |+|||||+++|++   ..+...+.++. +.++....              ..+++..+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            3567999999999         9999999999998   45555555543 22221111              12456778


Q ss_pred             EEEEEe-----------------------cCCcchhhhhhHHhhc---------------------cccEEEEEEECCCh
Q 028303           56 KLQIWD-----------------------TAGQESFRSITRSYYR---------------------GAAGALLVYDITRR   91 (210)
Q Consensus        56 ~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~V~d~~~~   91 (210)
                      .+.|||                       ++|++.+..++..+++                     ++|++|+|||++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            899999                       6666766667777776                     79999999999998


Q ss_pred             --hhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303           92 --ETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus        92 --~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                        .+++.+..|+..+... ...+.|+++|+||+|+.+.+.+  +++..++.. .+++++++||+++.|++++|++|.+.+
T Consensus       176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence              8999999999888665 2357999999999998654333  567777776 478999999999999999999998876


Q ss_pred             H
Q 028303          168 L  168 (210)
Q Consensus       168 ~  168 (210)
                      .
T Consensus       254 ~  254 (255)
T 3c5h_A          254 D  254 (255)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=9.9e-27  Score=183.44  Aligned_cols=162  Identities=20%  Similarity=0.341  Sum_probs=127.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-----hhhhHHhh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-----RSITRSYY   76 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~   76 (210)
                      ..+||+|+|++|+|||||+++|++.....   .+.+|.+....  .+.+++ .+.+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            46899999999999999999999873322   33445444444  344444 678999999999988     67888999


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEecCCCCC--CCC----CCHHHHHHHHHHcC---CeE
Q 028303           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAH--RRA----VSKEEGEQFAKENG---LLF  145 (210)
Q Consensus        77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  145 (210)
                      +.+|++|+|||++++.++.++..|...+....  ..++|+++|+||+|+.+  .+.    ...+++.+++..++   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877765554332  35799999999999976  333    44567788888886   789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHH
Q 028303          146 LEASARTAQNVEEAFIKTAAKILQN  170 (210)
Q Consensus       146 ~~~sa~~~~~i~~~~~~l~~~~~~~  170 (210)
                      +++||++ .++.++|..+++.+...
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li~~  182 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLIPN  182 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred             EEeeecC-ChHHHHHHHHHHHHcCC
Confidence            9999999 89999998887765443

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=3.3e-26  Score=168.70  Aligned_cols=158  Identities=15%  Similarity=0.203  Sum_probs=109.1

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC----------cchhhhhh
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSIT   72 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   72 (210)
                      ....++|+|+|++|+|||||+++|.+..+.....++.+.+.......+++   .+.+|||||          ++.+..++
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            34679999999999999999999999876555555555555555455544   578999999          77777778


Q ss_pred             HHhhccc---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCH--HHHHH-HHHHcCCeEE
Q 028303           73 RSYYRGA---AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--EEGEQ-FAKENGLLFL  146 (210)
Q Consensus        73 ~~~~~~~---d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~  146 (210)
                      ..+++.+   |++++|+|++++.+..... ++..+..   .+.|+++|+||+|+.+......  +++.+ +....+.+++
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI  172 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence            8888777   9999999999877665542 1222222   3789999999999976443321  22332 2222457899


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q 028303          147 EASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       147 ~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      ++||+++.|++++|++|.+.+
T Consensus       173 ~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          173 LFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEccCCCCHHHHHHHHHHHh
Confidence            999999999999999998765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.9e-26  Score=183.42  Aligned_cols=158  Identities=19%  Similarity=0.305  Sum_probs=118.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+|+|++|+|||||+++|.+..+.... +|.+...  ..+...  .+.+.||||||++.+..++..+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4579999999999999999999988764432 3333332  223333  4678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVEE  158 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~  158 (210)
                      |||++++.++..+..|+..+..... .++|+++|+||+|+.+..  ..+++......     .+++++++||+++.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            9999999999999888777654432 579999999999997533  23333333222     245699999999999999


Q ss_pred             HHHHHHHHHHH
Q 028303          159 AFIKTAAKILQ  169 (210)
Q Consensus       159 ~~~~l~~~~~~  169 (210)
                      +|+.|.+.+.+
T Consensus       317 l~~~l~~~l~~  327 (329)
T 3o47_A          317 GLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=4.6e-26  Score=167.00  Aligned_cols=157  Identities=20%  Similarity=0.197  Sum_probs=121.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh------hhhHHhhc-
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------SITRSYYR-   77 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-   77 (210)
                      ..++|+|+|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||++.+.      .++..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            468999999999999999999998765444445555566666666665  568899999988764      34555654 


Q ss_pred             -cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303           78 -GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus        78 -~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                       .+|++++|+|+++   +.....|+..+..   .+.|+++|+||+|+.+...+. .++..++...+++++++||+++.|+
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence             4899999999876   3445566666654   378999999999986544333 3466778888899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028303          157 EEAFIKTAAKILQN  170 (210)
Q Consensus       157 ~~~~~~l~~~~~~~  170 (210)
                      +++|++|.+.+...
T Consensus       157 ~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          157 EELKKAISIAVKDK  170 (188)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998877543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=3.1e-26  Score=167.98  Aligned_cols=156  Identities=17%  Similarity=0.201  Sum_probs=113.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC-----------cchhhhhhHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG-----------QESFRSITRSY   75 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~   75 (210)
                      ++|+|+|++|+|||||+++|.+..+...+.++.+...  ..+.+.    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999887666555443322  233333    578999999           66777777777


Q ss_pred             hcc-ccEEEEEEECCChhhHHHH-HHHHHH---------HHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe
Q 028303           76 YRG-AAGALLVYDITRRETFNHL-SSWLED---------ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL  144 (210)
Q Consensus        76 ~~~-~d~~i~V~d~~~~~s~~~~-~~~~~~---------~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  144 (210)
                      ++. ++++++|+++.+..++..+ ..|...         +......+.|+++|+||+|+.+..   .+++.+++...+++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            776 6655555555556666665 344431         122222478999999999997544   56677788877764


Q ss_pred             -------EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303          145 -------FLEASARTAQNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       145 -------~~~~sa~~~~~i~~~~~~l~~~~~~~~  171 (210)
                             ++++||+++.|++++|++|.+.+....
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence                   799999999999999999998876543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.93  E-value=8e-26  Score=161.45  Aligned_cols=150  Identities=19%  Similarity=0.179  Sum_probs=106.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcch-------hhhhhHHhhcc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------FRSITRSYYRG   78 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~   78 (210)
                      +||+++|++|+|||||+++|.+..+.. ...++.+.+.....+..++.  .+.+|||||...       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            689999999999999999999887542 22233344444455556664  678999999876       34566778899


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHH
Q 028303           79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVE  157 (210)
Q Consensus        79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~  157 (210)
                      +|++++|+|++++.+...  .++..+...  .+.|+++|+||+|+.+..    +++.+++ ..++ +++++||+++.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999998644322  222222222  268999999999996542    3334444 5566 79999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          158 EAFIKTAAKI  167 (210)
Q Consensus       158 ~~~~~l~~~~  167 (210)
                      ++|++|.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999988754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.93  E-value=3.4e-27  Score=185.21  Aligned_cols=159  Identities=18%  Similarity=0.243  Sum_probs=119.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh---hhHHhhccccE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---ITRSYYRGAAG   81 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~   81 (210)
                      ||+++|+.|+|||||++++.+.....   ...+|.+.++..    ++ ..+++++|||+|++.|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999987654322   234555555432    33 347899999999999964   46889999999


Q ss_pred             EEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC-------CCCCHHHHHHHHHH----cCCeEEEE
Q 028303           82 ALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-------RAVSKEEGEQFAKE----NGLLFLEA  148 (210)
Q Consensus        82 ~i~V~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  148 (210)
                      +|+|||+++.  .....+..|+..+... .+++|+++++||+|+..+       +.+..++++++++.    .++.|+++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999997  3333333344444333 357999999999999753       23555666777775    57889999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303          149 SARTAQNVEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       149 sa~~~~~i~~~~~~l~~~~~~~~~~  173 (210)
                      ||++ .++.++|..+++.+.+..+.
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~~~  178 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPELSF  178 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhHHH
Confidence            9998 68999999999887766554

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=3e-25  Score=170.83  Aligned_cols=156  Identities=21%  Similarity=0.195  Sum_probs=118.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh------hhHHhh-
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS------ITRSYY-   76 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-   76 (210)
                      ...++|+|+|++|+|||||+++|++..+.....+..+.+.....+...+  ..+.+|||||...+..      +...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4578999999999999999999998776443344445554444454444  6789999999876654      234454 


Q ss_pred             -ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303           77 -RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (210)
Q Consensus        77 -~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  155 (210)
                       ..+|++++|+|+++.++..   .|...+..   .+.|+++|+||+|+.+...+.. ++..++..++++++++||+++.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence             5899999999999876432   34444443   3789999999999865444442 36778888899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          156 VEEAFIKTAAKIL  168 (210)
Q Consensus       156 i~~~~~~l~~~~~  168 (210)
                      ++++|+.|.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988653

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=7.4e-26  Score=164.11  Aligned_cols=153  Identities=22%  Similarity=0.239  Sum_probs=111.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh------h--hHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS------I--TRSY   75 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~--~~~~   75 (210)
                      ..++|+|+|++|+|||||+++|.+..... ...++.+.++....+.+++.  .+.+|||||++.+..      .  ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            45899999999999999999999876432 22233344555556667764  478999999864321      1  1245


Q ss_pred             hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  155 (210)
                      ++.+|++++|+|++++.++. ...|+..+......++|+++|+||+|+.+...       .++...+.+++++||+++.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            78999999999999987765 34676666665545799999999999854221       11122456899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          156 VEEAFIKTAAKI  167 (210)
Q Consensus       156 i~~~~~~l~~~~  167 (210)
                      ++++|+.|.+.+
T Consensus       153 v~~l~~~l~~~~  164 (172)
T 2gj8_A          153 VDVLRNHLKQSM  164 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=1e-24  Score=171.97  Aligned_cols=161  Identities=17%  Similarity=0.088  Sum_probs=122.4

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-ceeEEEEEEEEECCEEEEEEEEecCCcchhh----------hh
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGVEFGARMVTIDGRPIKLQIWDTAGQESFR----------SI   71 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~   71 (210)
                      ..+.-.|+++|.+|+|||||+|+|++..+......+ .+..........+ ....+.+|||||...+.          ..
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~   85 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEI   85 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHH
Confidence            345678999999999999999999998876433222 2222222223333 14678899999985433          56


Q ss_pred             hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CeEEEEe
Q 028303           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEAS  149 (210)
Q Consensus        72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s  149 (210)
                      ...+++.+|++++|+|++++.+..+...|+..+...   +.|+++|+||+|+........+.+..+....+  .+++++|
T Consensus        86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS  162 (308)
T 3iev_A           86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS  162 (308)
T ss_dssp             HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred             HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence            677889999999999999988877777777766653   68999999999997444445566667777765  7899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 028303          150 ARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       150 a~~~~~i~~~~~~l~~~~  167 (210)
                      |+++.|++++|+.|.+.+
T Consensus       163 A~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          163 ALKGANLDELVKTILKYL  180 (308)
T ss_dssp             TTTTBSHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHhC
Confidence            999999999999988766

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=3.9e-26  Score=192.56  Aligned_cols=164  Identities=19%  Similarity=0.254  Sum_probs=124.0

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEE------EE--ECCEEEEEEEEecCCcchhhhhhHH
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM------VT--IDGRPIKLQIWDTAGQESFRSITRS   74 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~i~D~~G~~~~~~~~~~   74 (210)
                      ....+||+|+|.+|+|||||+++|++..+...+.++.+.++....      +.  .++..+.+.+||+||++.+..+...
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            456799999999999999999999999888777777777665442      11  1234578999999999999999999


Q ss_pred             hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 028303           75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ  154 (210)
Q Consensus        75 ~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  154 (210)
                      +++.+|++|+|+|+++.   +.+..|+..+.... .+.|+++|+||+|+.+...+..++++.++...+++++++||+++.
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            99999999999999865   45667777777664 368999999999998877788888888888889999999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 028303          155 NVEEAFIKTAAKILQN  170 (210)
Q Consensus       155 ~i~~~~~~l~~~~~~~  170 (210)
                      |++++++.|.+.+...
T Consensus       194 gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          194 GVESIAKSLKSAVLHP  209 (535)
T ss_dssp             -CTTHHHHHHHHHTCT
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999998877543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.92  E-value=8.8e-25  Score=160.77  Aligned_cols=155  Identities=17%  Similarity=0.237  Sum_probs=111.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC----------cchhhhhhH
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSITR   73 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~   73 (210)
                      ...++|+|+|++|+|||||+++|++.... ...++.+.+........+.   .+.+|||||          ++.+..++.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence            45689999999999999999999998743 3333334444433333333   467999999          666777777


Q ss_pred             Hhhccc---cEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEecCCCCCCC--CCCHHHHHHHHHHc-CCeE
Q 028303           74 SYYRGA---AGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRR--AVSKEEGEQFAKEN-GLLF  145 (210)
Q Consensus        74 ~~~~~~---d~~i~V~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~-~~~~  145 (210)
                      .+++.+   |++++|+|+++..+...  +..|+..   .   +.|+++|+||+|+.+..  ....+++..++... .+++
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI  170 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence            777766   99999999987644322  2233322   2   68999999999986532  22334555566553 4789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 028303          146 LEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       146 ~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      +++||+++.|++++|++|.+.+.
T Consensus       171 ~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          171 IPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHC
T ss_pred             EEEecCCCCCHHHHHHHHHHHhh
Confidence            99999999999999999988764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=2.5e-25  Score=172.28  Aligned_cols=153  Identities=18%  Similarity=0.174  Sum_probs=114.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh------hhhHHhhc-
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------SITRSYYR-   77 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-   77 (210)
                      ..++|+++|++|+|||||+++|++........+.  .+.......+.. ...+.+|||||+..+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg--~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPG--VTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSC--CCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCC--CcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            4689999999999999999999987643333332  233333344555 5678999999988765      45566665 


Q ss_pred             -cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303           78 -GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus        78 -~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                       .+|++++|+|+++.+..   ..|...+..   .+.|+++++||+|+.+...+. .++..++..++++++++||+++.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999886543   345444444   378999999999986543333 3456777888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028303          157 EEAFIKTAAKI  167 (210)
Q Consensus       157 ~~~~~~l~~~~  167 (210)
                      +++|+.|.+.+
T Consensus       152 ~el~~~i~~~~  162 (272)
T 3b1v_A          152 DQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999987754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=2.6e-25  Score=170.90  Aligned_cols=151  Identities=17%  Similarity=0.123  Sum_probs=115.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh----------hhHHhh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----------ITRSYY   76 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~   76 (210)
                      .+|+|+|++|||||||+|+|++........++.+.+.....+.+++.  .+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999998765545556566666666777764  688999999876653          455666


Q ss_pred             --ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 028303           77 --RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ  154 (210)
Q Consensus        77 --~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  154 (210)
                        ..+|++|+|+|+++.+....+..+   +.   ..+.|+++|+||+|+.+...... ....+....+++++++||+++.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              899999999999986554443332   22   23789999999999864333221 2445677789999999999999


Q ss_pred             CHHHHHHHHHHH
Q 028303          155 NVEEAFIKTAAK  166 (210)
Q Consensus       155 ~i~~~~~~l~~~  166 (210)
                      |++++|+.|.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999998764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=8e-25  Score=164.65  Aligned_cols=165  Identities=15%  Similarity=0.122  Sum_probs=109.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCc----------chhhhhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQ----------ESFRSIT   72 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~~~~   72 (210)
                      ...++|+|+|++|+|||||+++|++...........+.+.......+. .....+.+|||||.          +.+....
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            456899999999999999999999986322222222233333333443 33457889999994          4445566


Q ss_pred             HHhhcc---ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHH-------
Q 028303           73 RSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKE-------  140 (210)
Q Consensus        73 ~~~~~~---~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~-------  140 (210)
                      ..+++.   +|++++|+|++++.+.. ...++..+..   .+.|+++|+||+|+......  ..++..+.+..       
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~  182 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA  182 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence            666665   78899999998754422 2234444433   36899999999998653321  11222233333       


Q ss_pred             cCCeEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028303          141 NGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       141 ~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~  172 (210)
                      ...+++++||+++.|++++|++|.+.+.....
T Consensus       183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~  214 (223)
T 4dhe_A          183 GKLTVQLFSALKRTGLDDAHALIESWLRPAAA  214 (223)
T ss_dssp             SCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred             CCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence            45779999999999999999999988765443

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=2.4e-24  Score=167.08  Aligned_cols=155  Identities=21%  Similarity=0.190  Sum_probs=118.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh------hhHHhh--c
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS------ITRSYY--R   77 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~   77 (210)
                      .++|+|+|++|+|||||+++|++..+.....++.+.+.....+.+.+.  .+.+|||||...+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            589999999999999999999998775555556666666666666664  488999999877665      455555  6


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (210)
Q Consensus        78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  157 (210)
                      .+|++++|+|+++...   ...++..+....  ..|+++|+||+|+.+....... ...+...++++++++|++++.|++
T Consensus        81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           81 NADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             CCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             CCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence            8999999999988642   233444444331  2899999999998543333222 566777889999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028303          158 EAFIKTAAKIL  168 (210)
Q Consensus       158 ~~~~~l~~~~~  168 (210)
                      ++++.+.+.+.
T Consensus       155 ~l~~~i~~~~~  165 (271)
T 3k53_A          155 ELKRMIALMAE  165 (271)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.91  E-value=1.2e-24  Score=169.00  Aligned_cols=154  Identities=17%  Similarity=0.148  Sum_probs=114.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh----------hhHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----------ITRSY   75 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~   75 (210)
                      .++|+|+|++|+|||||+|+|++..+.....++.+.+.....+...+  ..+.+|||||...+..          ....+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            58999999999999999999999876444445555566555565555  3577999999876552          23333


Q ss_pred             h--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCC
Q 028303           76 Y--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA  153 (210)
Q Consensus        76 ~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  153 (210)
                      +  +.+|++++|+|+++.+....+..+   +...   ++|+++|+||+|+.+..... .....+....+++++++||+++
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence            3  799999999999986654443333   3333   78999999999985433322 1245677778899999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028303          154 QNVEEAFIKTAAKIL  168 (210)
Q Consensus       154 ~~i~~~~~~l~~~~~  168 (210)
                      .|++++++.|.+.+.
T Consensus       154 ~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          154 RGIEALKLAIDRYKA  168 (274)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999998876543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=9.8e-25  Score=163.69  Aligned_cols=143  Identities=20%  Similarity=0.280  Sum_probs=105.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcc--
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG--   78 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--   78 (210)
                      ...++|+|+|++|+|||||+++|.+..+...   +.++.+.         +.....+.+|||||++.+...+..+++.  
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            4678999999999999999999999876542   2222221         1234578899999999998888888877  


Q ss_pred             --ccEEEEEEECC-ChhhHHHHHHHHHHHHhh----cCCCCeEEEEEecCCCCCCCCCC------HHHHHHHHHHcCCeE
Q 028303           79 --AAGALLVYDIT-RRETFNHLSSWLEDARQH----ANPNMSIMLVGNKCDLAHRRAVS------KEEGEQFAKENGLLF  145 (210)
Q Consensus        79 --~d~~i~V~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~  145 (210)
                        +|++|+|+|++ ++.++..+..|+..+...    ...+.|+++|+||+|+.......      .+++..++...++.+
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~  160 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL  160 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccc
Confidence              89999999999 888888888887777554    23579999999999997655433      345666666667789


Q ss_pred             EEEecCCCCC
Q 028303          146 LEASARTAQN  155 (210)
Q Consensus       146 ~~~sa~~~~~  155 (210)
                      +++|++++.+
T Consensus       161 ~~~Sa~~~~~  170 (218)
T 1nrj_B          161 NEVERKINEE  170 (218)
T ss_dssp             HC--------
T ss_pred             cccccccccc
Confidence            9999998765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=1.5e-23  Score=172.60  Aligned_cols=160  Identities=17%  Similarity=0.127  Sum_probs=115.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCc----------chhhhhhH
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----------ESFRSITR   73 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~   73 (210)
                      ..++|+++|++|+|||||+|+|++.... ....++.+.+.....+.+++.  .+.+|||||+          +.+..+..
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence            5689999999999999999999988753 222333344444455666665  4789999997          44554443


Q ss_pred             -HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-H----cCCeEEE
Q 028303           74 -SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-E----NGLLFLE  147 (210)
Q Consensus        74 -~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~  147 (210)
                       .+++.+|++++|+|++++.+..+. .|...+..   .+.|+++|+||+|+.+......++..+... .    .++++++
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  327 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence             478899999999999998877665 45555543   378999999999997655544444433222 2    3678999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHH
Q 028303          148 ASARTAQNVEEAFIKTAAKILQN  170 (210)
Q Consensus       148 ~sa~~~~~i~~~~~~l~~~~~~~  170 (210)
                      +||++|.|++++|+.+.+.+...
T Consensus       328 ~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          328 MSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHh
Confidence            99999999999999998877654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=5.1e-23  Score=170.39  Aligned_cols=163  Identities=17%  Similarity=0.132  Sum_probs=119.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCC----------cchhhhhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSIT   72 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   72 (210)
                      +..++|+++|.+++|||||+++|.+.... ....++.+.+.....+..++.  .+.+|||||          ++.+....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            35689999999999999999999976532 222333344443444556664  688999999          67777665


Q ss_pred             H-HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-----CCeEE
Q 028303           73 R-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-----GLLFL  146 (210)
Q Consensus        73 ~-~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~  146 (210)
                      . .+++.+|++++|+|++++..... ..|...+..   .+.|+++|+||+|+.+......+++.+.+...     .++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence            5 47899999999999998644222 334444433   37899999999999877777777777777664     57899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHh
Q 028303          147 EASARTAQNVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       147 ~~sa~~~~~i~~~~~~l~~~~~~~~~  172 (210)
                      ++||++|.|++++|+.|.+.+.....
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999987765543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.90  E-value=1.8e-22  Score=162.31  Aligned_cols=163  Identities=18%  Similarity=0.158  Sum_probs=119.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh---------hhhHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR---------SITRSY   75 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~   75 (210)
                      ..++|+++|++|+|||||+++|.+........+..+.......+...  ...+.+|||||.....         ......
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            45899999999999999999999876432222222333333333334  3568899999974321         112234


Q ss_pred             hccccEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCC
Q 028303           76 YRGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA  153 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  153 (210)
                      ...+|++++|+|++++.  ++.....|+..+..... +.|+++|+||+|+.....  .+++..++...+++++++||++|
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g  320 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKG  320 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTT
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCC
Confidence            45789999999998876  66777788887766543 789999999999865332  24566677777889999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 028303          154 QNVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       154 ~~i~~~~~~l~~~~~~~~~  172 (210)
                      +|+++++++|.+.+.....
T Consensus       321 ~gi~~l~~~i~~~l~~~~~  339 (357)
T 2e87_A          321 TGIDLVKEEIIKTLRPLAE  339 (357)
T ss_dssp             BTHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHh
Confidence            9999999999998866543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=5.3e-23  Score=169.55  Aligned_cols=179  Identities=20%  Similarity=0.162  Sum_probs=113.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcch---------hhhhhHHhh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRSYY   76 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   76 (210)
                      .+|+++|.+|+|||||+|+|++..... ...+..+.+.....+.+++.  .+.+|||||.+.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            479999999999999999999887542 33334444555556667765  478999999653         334567789


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHH-HHHHHHcCC-eEEEEecCCCC
Q 028303           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG-EQFAKENGL-LFLEASARTAQ  154 (210)
Q Consensus        77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~sa~~~~  154 (210)
                      +.+|++++|+|+.++.+..+  .++..+...  .+.|+++|+||+|+.+.  . ..++ .+++ ..++ +++++||++|.
T Consensus        80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~  151 (439)
T 1mky_A           80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNI  151 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence            99999999999987654332  122222222  26899999999997431  0 1223 3443 4565 68999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccc---cccccCCcccccCCCCCCC
Q 028303          155 NVEEAFIKTAAKILQNIQEGAL---DAVNDSGIKVGYGRGQGPS  195 (210)
Q Consensus       155 ~i~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  195 (210)
                      |+.++++.|.+.+.....+...   .......+.+|.++.|||+
T Consensus       152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKST  195 (439)
T 1mky_A          152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKST  195 (439)
T ss_dssp             SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHH
T ss_pred             CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHH
Confidence            9999999998877542111001   1111235677777766553

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.89  E-value=6.8e-23  Score=169.67  Aligned_cols=156  Identities=19%  Similarity=0.132  Sum_probs=98.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhh--------HHhh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSIT--------RSYY   76 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~   76 (210)
                      .++|+|+|++|+|||||+|+|++.... ....++.+.+.....+.+++  +.+.+|||||...+...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            488999999999999999999987543 22333335555555566666  468899999987665433        3367


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus        77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                      +.+|++++|+|++++.++..+..+...+....  +.|+++|+||+|+......   ....+......+++++||+++.|+
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI  385 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI  385 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence            89999999999999877654433333333322  6899999999999764432   223343332468999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          157 EEAFIKTAAKIL  168 (210)
Q Consensus       157 ~~~~~~l~~~~~  168 (210)
                      ++++++|.+.+.
T Consensus       386 ~eL~~~i~~~~~  397 (476)
T 3gee_A          386 DTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988775

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.89  E-value=5e-23  Score=161.62  Aligned_cols=154  Identities=21%  Similarity=0.157  Sum_probs=106.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCceeEEEEEEEEECCEEEEEEEEecCCcch--------hhhhhHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY   75 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   75 (210)
                      ...+|+|+|.+|+|||||+|+|++..+..... +..+.......+..+  ..++.+|||||...        +......+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            35689999999999999999999988764322 221222222222233  46789999999765        45566778


Q ss_pred             hccccEEEEEEECCChhhHHHHHHHH-HHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCeEEEEecCC
Q 028303           76 YRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--GLLFLEASART  152 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~  152 (210)
                      ++.+|++++|+|++++.+..  ..|+ ..+... ..+.|+++|+||+|+.+...    +....+..+  ..+++++||++
T Consensus        84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~  156 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALD  156 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTC
T ss_pred             HhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCC
Confidence            89999999999999865433  2343 344332 23689999999999864322    022233322  35689999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028303          153 AQNVEEAFIKTAAKI  167 (210)
Q Consensus       153 ~~~i~~~~~~l~~~~  167 (210)
                      +.|++++++.|.+.+
T Consensus       157 g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          157 ERQVAELKADLLALM  171 (301)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhc
Confidence            999999999987654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.88  E-value=4.6e-23  Score=164.68  Aligned_cols=119  Identities=18%  Similarity=0.254  Sum_probs=99.2

Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCC----------hhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCC
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHA-NPNMSIMLVGNKCD  122 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D  122 (210)
                      .+.+.+||++|++.++..|..++++++++|||||+++          ..++.+...|+..+.... ..+.|+|+++||.|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            5789999999999999999999999999999999999          456888888888876542 25799999999999


Q ss_pred             CCCCC---------------CCCHHHHHHHHH-----------HcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028303          123 LAHRR---------------AVSKEEGEQFAK-----------ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       123 ~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~  172 (210)
                      +.++.               .++.+++..++.           ..++.++++||+++.|+.++|+++.+.+.....
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l  347 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL  347 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence            85322               356788888886           346779999999999999999999998876543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=1.5e-21  Score=159.43  Aligned_cols=161  Identities=19%  Similarity=0.175  Sum_probs=105.3

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCC--CceeEEEEEEEEE-------------C--C----EEEE
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDL--TIGVEFGARMVTI-------------D--G----RPIK   56 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~   56 (210)
                      |.....++|+++|+.++|||||+++|++..   +..+..+  |....+....+..             +  +    ....
T Consensus         3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   82 (408)
T 1s0u_A            3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR   82 (408)
T ss_dssp             --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence            345677999999999999999999999543   2233333  3333333333221             1  1    1368


Q ss_pred             EEEEecCCcchhhhhhHHhhccccEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CC
Q 028303           57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VS  130 (210)
Q Consensus        57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~  130 (210)
                      +.+|||||++.|...+...+..+|++|+|+|++++    .+.+.+.    .+....  ..|+++++||+|+.+...  ..
T Consensus        83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l~--~~~iivv~NK~Dl~~~~~~~~~  156 (408)
T 1s0u_A           83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEILG--IDKIIIVQNKIDLVDEKQAEEN  156 (408)
T ss_dssp             EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHTT--CCCEEEEEECTTSSCTTTTTTH
T ss_pred             EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHcC--CCeEEEEEEccCCCCHHHHHHH
Confidence            99999999999988888888889999999999964    3333332    222221  248999999999976433  23


Q ss_pred             HHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          131 KEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       131 ~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      .+++.+++..   .+++++++||+++.|++++++.|.+.+
T Consensus       157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            4566666664   357899999999999999999987654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=1e-22  Score=162.17  Aligned_cols=157  Identities=18%  Similarity=0.183  Sum_probs=115.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch----hhhhhHHhhc---cc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSITRSYYR---GA   79 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~   79 (210)
                      .+|+|+|.+++|||||+++|++........+..+.......+.+++ ...+.+|||||..+    +..+...+++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            4689999999999999999998764322222223333333344543 24688999999643    3334445544   59


Q ss_pred             cEEEEEEECCC---hhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CeEEEEecCC
Q 028303           80 AGALLVYDITR---RETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASART  152 (210)
Q Consensus        80 d~~i~V~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~  152 (210)
                      |++|+|+|+++   ..++..+..|+..+..+..  .+.|+++|+||+|+....    +....+.....  .+++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7788888888888877542  478999999999986422    34556666655  6799999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028303          153 AQNVEEAFIKTAAKIL  168 (210)
Q Consensus       153 ~~~i~~~~~~l~~~~~  168 (210)
                      +.|++++++.|.+.+.
T Consensus       314 g~gi~eL~~~l~~~l~  329 (342)
T 1lnz_A          314 REGLRELLFEVANQLE  329 (342)
T ss_dssp             SSTTHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999988764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.88  E-value=6.3e-21  Score=155.57  Aligned_cols=163  Identities=15%  Similarity=0.120  Sum_probs=114.7

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEE-------EE---------EE---CCEEEEEEEEec
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR-------MV---------TI---DGRPIKLQIWDT   62 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~i~D~   62 (210)
                      ...+.++|+++|++++|||||+++|++.......... ..+....       .+         ..   ......+.+|||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            3467799999999999999999999975433211100 0000000       00         00   122368999999


Q ss_pred             CCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHH
Q 028303           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKE  140 (210)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~  140 (210)
                      ||++.+...+...+..+|++++|+|++++.+......++..+....  ..|+++++||+|+.+....  ..+++.+++..
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999776666777776665543  2589999999998653211  11223333322


Q ss_pred             c---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          141 N---GLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       141 ~---~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      .   +++++++||+++.|++++++.|.+.+
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            2   57899999999999999999988754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=1.2e-23  Score=173.14  Aligned_cols=178  Identities=17%  Similarity=0.100  Sum_probs=110.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc--------hhhhhhHHhhcc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE--------SFRSITRSYYRG   78 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~   78 (210)
                      ++|+++|.+|+|||||+|+|++..+... ..+.+.+.......+......+.+|||||.+        .+...+..+++.
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            6899999999999999999998766432 2233444433334444444578999999985        566677888999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHH
Q 028303           79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVE  157 (210)
Q Consensus        79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~  157 (210)
                      +|++|+|+|+.++.+..+  .++..+..  ..+.|+++|+||+|+.+...    ++.+++ ..++ +++++||++|.|+.
T Consensus        83 ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~  153 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG  153 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence            999999999998766443  23333322  24789999999999864321    111222 3344 68999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccccccCCcccccCCCCCCC
Q 028303          158 EAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPS  195 (210)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (210)
                      ++++.+.+.+... ++...+....+.+.+|..+.||++
T Consensus       154 ~L~~~i~~~l~~~-~~~~~~~~~~ki~lvG~~nvGKSS  190 (436)
T 2hjg_A          154 DLLDAVAEHFKNI-PETKYNEEVIQFCLIGRPNVGKSS  190 (436)
T ss_dssp             HHHHHHHHTGGGC-CSSCCCTTCEEEEEECSTTSSHHH
T ss_pred             HHHHHHHHhcCcc-ccccccccCcEEEEEcCCCCCHHH
Confidence            9999988776421 111011112236677887766654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.88  E-value=1.7e-21  Score=164.76  Aligned_cols=162  Identities=23%  Similarity=0.258  Sum_probs=114.2

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCC--CCC-----CCCC------CceeEEE--EEEEEE---CCEEEEEEEEec
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR--FQP-----VHDL------TIGVEFG--ARMVTI---DGRPIKLQIWDT   62 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~-----~~~~------~~~~~~~--~~~~~~---~~~~~~~~i~D~   62 (210)
                      |..++..+|+++|+.++|||||+++|+...  ...     ....      ..+.+..  ...+.+   ++..+.++||||
T Consensus         1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT   80 (600)
T 2ywe_A            1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT   80 (600)
T ss_dssp             CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred             CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence            555678899999999999999999997531  110     0000      1111211  111212   455688999999


Q ss_pred             CCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028303           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG  142 (210)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  142 (210)
                      ||+..|...+...++.+|++|+|+|++++.+......|.....    .++|+++|+||+|+....  ..+...++....+
T Consensus        81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg  154 (600)
T 2ywe_A           81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLG  154 (600)
T ss_dssp             CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSC
T ss_pred             CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhC
Confidence            9999999999999999999999999999877777766665443    378999999999997533  1233444555556


Q ss_pred             C---eEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          143 L---LFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       143 ~---~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      +   +++++||++|.|++++|+.|.+.+.
T Consensus       155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          155 LDPEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             CCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence            5   3899999999999999998877653

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.88  E-value=5.9e-22  Score=164.20  Aligned_cols=154  Identities=21%  Similarity=0.174  Sum_probs=114.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc-hhhh--------hhHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-SFRS--------ITRSY   75 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~   75 (210)
                      .++|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++.  .+.+|||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            389999999999999999999987643 223333355555556667764  57899999987 5432        24567


Q ss_pred             hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  155 (210)
                      ++.+|++++|+|++++.++.+.. ++..+     .+.|+++|+||+|+.+.  ...+++..++. .+.+++++||+++.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            88999999999999887765543 22222     26899999999999653  34455555432 446899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028303          156 VEEAFIKTAAKILQN  170 (210)
Q Consensus       156 i~~~~~~l~~~~~~~  170 (210)
                      +++++++|.+.+...
T Consensus       392 i~eL~~~l~~~~~~~  406 (482)
T 1xzp_A          392 LEKLEESIYRETQEI  406 (482)
T ss_dssp             HHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999977643

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.87  E-value=2.6e-23  Score=169.65  Aligned_cols=156  Identities=14%  Similarity=0.133  Sum_probs=113.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh-------hHHh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-------TRSY   75 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~   75 (210)
                      ...++|+|+|+.++|||||+++|++..+.. ...+..+.+.....+.+.+. ..+.+|||||++.+..+       ...+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            356899999999999999999999887632 22333344444555555543 26889999998876543       4567


Q ss_pred             hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  155 (210)
                      ++.+|++|+|+|+....   ....|+..+...   +.|+++|+||+|+......  +...++...++++++++||+++.|
T Consensus       111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~g  182 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKG  182 (423)
T ss_dssp             HTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred             HhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCC
Confidence            88999999999994332   345566666554   7899999999999765543  556666667788999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          156 VEEAFIKTAAKIL  168 (210)
Q Consensus       156 i~~~~~~l~~~~~  168 (210)
                      ++++|+.|.+.+.
T Consensus       183 I~eL~~~L~~~l~  195 (423)
T 3qq5_A          183 FDDIGKTISEILP  195 (423)
T ss_dssp             TTTHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999988774

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.87  E-value=2e-21  Score=164.49  Aligned_cols=159  Identities=21%  Similarity=0.237  Sum_probs=110.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCC--C-----CCCC------CCceeEEEEEE--EEE---CCEEEEEEEEecCCc
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF--Q-----PVHD------LTIGVEFGARM--VTI---DGRPIKLQIWDTAGQ   65 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-----~~~~------~~~~~~~~~~~--~~~---~~~~~~~~i~D~~G~   65 (210)
                      ++..+|+++|+.++|||||+++|+....  .     ....      ...+.+.....  +.+   ++..+.++||||||+
T Consensus         2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh   81 (599)
T 3cb4_D            2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH   81 (599)
T ss_dssp             TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence            3468999999999999999999986321  0     0000      11223332222  222   455689999999999


Q ss_pred             chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe-
Q 028303           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-  144 (210)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-  144 (210)
                      ..|...+...++.+|++|+|+|++++.+......|.....    .++|+++|+||+|+....  ..+...++....++. 
T Consensus        82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~  155 (599)
T 3cb4_D           82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDA  155 (599)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCC
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCc
Confidence            9999999999999999999999999877666666655443    278999999999997533  223344555555653 


Q ss_pred             --EEEEecCCCCCHHHHHHHHHHHHH
Q 028303          145 --FLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       145 --~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                        ++++||++|.|++++++.|.+.+.
T Consensus       156 ~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          156 TDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             ceEEEeecccCCCchhHHHHHhhcCC
Confidence              899999999999999998877653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=3.1e-21  Score=146.82  Aligned_cols=161  Identities=14%  Similarity=0.122  Sum_probs=104.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CceeEEEEEEEEECCEEEEEEEEecCCc-----------chhhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVTIDGRPIKLQIWDTAGQ-----------ESFRS   70 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~~~   70 (210)
                      ...++|+|+|++|+|||||+++|++..+.....+  +.+.........+++  ..+.+|||||.           +.+..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            4569999999999999999999999887655544  334444444455665  35789999993           34444


Q ss_pred             hhHHhhccccEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC------HHHHHHHHHHcC
Q 028303           71 ITRSYYRGAAGALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS------KEEGEQFAKENG  142 (210)
Q Consensus        71 ~~~~~~~~~d~~i~V~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~  142 (210)
                      .+..+++.+|++|+|+|+++...  ...+..+...+...  ...|+++|+||+|+.....+.      .+.++.++...+
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~  182 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG  182 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence            55566678899999999876433  12222222222111  135999999999986543332      235677778888


Q ss_pred             CeEEEEecCCC-----CCHHHHHHHHHHHHH
Q 028303          143 LLFLEASARTA-----QNVEEAFIKTAAKIL  168 (210)
Q Consensus       143 ~~~~~~sa~~~-----~~i~~~~~~l~~~~~  168 (210)
                      ..++.++...+     .++.++|+.+.+.+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~  213 (239)
T 3lxx_A          183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVR  213 (239)
T ss_dssp             SSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence            88888877644     577888877766553

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=1.8e-21  Score=159.14  Aligned_cols=159  Identities=18%  Similarity=0.183  Sum_probs=110.5

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCC--CceeEEEEEEEEE-------------C--C----EEEEEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDL--TIGVEFGARMVTI-------------D--G----RPIKLQ   58 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   58 (210)
                      ....++|+++|+.++|||||+++|++..   +..+...  |....+....+..             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999999643   2222223  3333333332211             1  1    136899


Q ss_pred             EEecCCcchhhhhhHHhhccccEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CCHH
Q 028303           59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKE  132 (210)
Q Consensus        59 i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~  132 (210)
                      +|||||++.|.......+..+|++|+|+|++++    .+.+.+.    .+....  ..|+++++||+|+.+...  ...+
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~  160 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALENYR  160 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHHHHH
Confidence            999999999988888888899999999999964    3333332    222221  257999999999865321  1233


Q ss_pred             HHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          133 EGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       133 ~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      ++.+++..   ..++++++||+++.|++++++.|.+.+
T Consensus       161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            45555543   357899999999999999999887654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.87  E-value=2.4e-21  Score=161.06  Aligned_cols=155  Identities=18%  Similarity=0.156  Sum_probs=110.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhc
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR   77 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   77 (210)
                      ..++|+++|+.++|||||+++|++..       ...+.....+.+.....+.+++  ..+.+|||||++.|...+...+.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence            46899999999999999999999876       2222222333333333344454  57899999999999999999999


Q ss_pred             cccEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHc----CCeEEEE
Q 028303           78 GAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKEN----GLLFLEA  148 (210)
Q Consensus        78 ~~d~~i~V~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~~~~  148 (210)
                      .+|++|+|+|++++   .+.+.+    ..+..   .++|+++++||+|+.+...  ...+++.+++...    .++++++
T Consensus        96 ~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v  168 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI  168 (482)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred             hCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence            99999999999983   333332    22222   2688999999999865211  1223455566555    5789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028303          149 SARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       149 sa~~~~~i~~~~~~l~~~~~  168 (210)
                      ||+++.|++++++.|.+.+.
T Consensus       169 SA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          169 SAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999988775

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.87  E-value=2.4e-22  Score=158.46  Aligned_cols=118  Identities=16%  Similarity=0.197  Sum_probs=96.9

Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECC----------ChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCC
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCD  122 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D  122 (210)
                      .+.+++||++|++.++..|..+++.++++|||+|++          +..++.+...|+..+..... .+.|+++++||+|
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D  245 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  245 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence            478999999999999999999999999999999665          56667777777777754432 5799999999999


Q ss_pred             CCCCC----------------CCCHHHHHHHHH----------HcCCeEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303          123 LAHRR----------------AVSKEEGEQFAK----------ENGLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       123 ~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~  171 (210)
                      +.+++                ..+.+++.+++.          ..++.++++||+++.||+.+|..+.+.+++..
T Consensus       246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            85432                467788887753          34567889999999999999999999988754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.87  E-value=1.1e-21  Score=156.72  Aligned_cols=121  Identities=16%  Similarity=0.209  Sum_probs=95.3

Q ss_pred             EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECC----------ChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecC
Q 028303           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHA-NPNMSIMLVGNKC  121 (210)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  121 (210)
                      ..+.+.+|||+|++.++.+|..+++.++++|||||++          +..++.+...|+..+.... ..++|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5789999999999999999999999999999999998          7788888888888876543 2579999999999


Q ss_pred             CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCeEEEEecCCCCCHHHHHHHHH
Q 028303          122 DLAHRRA--V-------------------SKEEGEQFAKE----------------NGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus       122 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      |+.+++.  .                   +.+++..++..                ..+.++++||+++.|++++|+.+.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843211  1                   14566666443                123468999999999999999999


Q ss_pred             HHHHHHHhh
Q 028303          165 AKILQNIQE  173 (210)
Q Consensus       165 ~~~~~~~~~  173 (210)
                      +.+.....+
T Consensus       341 ~~I~~~~l~  349 (354)
T 2xtz_A          341 ETLRRRNLL  349 (354)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988766543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=1.1e-21  Score=163.41  Aligned_cols=154  Identities=15%  Similarity=0.107  Sum_probs=99.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCceeEEEEEEEEECCEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTIDGRP   54 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   54 (210)
                      ...++|+++|++++|||||+++|++....-.                             .....+.+.......++...
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            3569999999999999999999976511000                             00011222222233344445


Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHH------HHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH------LSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                      ..+.||||||++.|...+..++..+|++|+|+|++++.+...      .......+...  ...|+|+|+||+|+.+...
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~  188 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ  188 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence            678999999999999999999999999999999998754322      22222222222  1246999999999976433


Q ss_pred             CCHHHHHH----HHHHc-----CCeEEEEecCCCCCHHHH
Q 028303          129 VSKEEGEQ----FAKEN-----GLLFLEASARTAQNVEEA  159 (210)
Q Consensus       129 ~~~~~~~~----~~~~~-----~~~~~~~sa~~~~~i~~~  159 (210)
                      ...+++..    ++...     .++++++||++|.|++++
T Consensus       189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            33333333    33332     457999999999999853

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.86  E-value=1.4e-20  Score=151.10  Aligned_cols=160  Identities=24%  Similarity=0.141  Sum_probs=107.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc---------hhhhhhHHhhcc
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE---------SFRSITRSYYRG   78 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~   78 (210)
                      .|+++|++|+|||||+++|++........+..+.+.....+.+++.  .+.+|||+|.-         .+... ...+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence            3999999999999999999988764333333344455556777773  57899999962         23332 235788


Q ss_pred             ccEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHHHc---CCeEEEEecCC
Q 028303           79 AAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKEN---GLLFLEASART  152 (210)
Q Consensus        79 ~d~~i~V~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~sa~~  152 (210)
                      +|++++|+|++++.  ....+..|...+......+.|+++|+||+|+...... ..+.+..++...   ..+++++|+++
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~  337 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK  337 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99999999999876  5555555655555544457899999999998653210 011232333444   23689999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 028303          153 AQNVEEAFIKTAAKILQN  170 (210)
Q Consensus       153 ~~~i~~~~~~l~~~~~~~  170 (210)
                      +.|++++++.|.+.+...
T Consensus       338 g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          338 RTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             TBSHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhccc
Confidence            999999999998876543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=6.8e-22  Score=153.45  Aligned_cols=160  Identities=16%  Similarity=0.218  Sum_probs=92.1

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------CCCceeEEEEEEEEECCEEEEEEEEecCCcc-------h
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-------S   67 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~   67 (210)
                      ....++|+|+|.+|+|||||+|+|++.......        .++.+.+.....+..++..+.+.+|||||..       .
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            345799999999999999999999877654432        3455555555555556666789999999973       2


Q ss_pred             hhhhh-------HHhhcc-------------ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303           68 FRSIT-------RSYYRG-------------AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        68 ~~~~~-------~~~~~~-------------~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                      +..+.       ..++..             +|+++++++.+.......-..++..+..    ++|+|+|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence            33332       333333             7789999977652211111223333322    68999999999985422


Q ss_pred             CC--CHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303          128 AV--SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       128 ~~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      ..  ..+.+.+.+...+++++++|+++++++.++++.|.+.
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            21  1123455566678899999999999999988887653

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=8.2e-21  Score=156.27  Aligned_cols=153  Identities=23%  Similarity=0.183  Sum_probs=103.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCCceeEEEEEEEEECC
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF-------------------------------QPVHDLTIGVEFGARMVTIDG   52 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   52 (210)
                      ...++|+++|++++|||||+++|+....                               ..+.....+.+....  .+..
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~--~~~~   92 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRA--YFET   92 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEE--EEec
Confidence            3568999999999999999999965421                               111112233333333  3333


Q ss_pred             EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhH------HHHHHHHHHHHhhcCCCCe-EEEEEecCCCCC
Q 028303           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF------NHLSSWLEDARQHANPNMS-IMLVGNKCDLAH  125 (210)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  125 (210)
                      ....+.||||||++.|...+...+..+|++|+|+|++++...      ......+..+..   .++| +|+++||+|+..
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPT  169 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCcc
Confidence            445799999999999999999999999999999999986421      112222222222   2567 899999999853


Q ss_pred             CC------CCCHHHHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Q 028303          126 RR------AVSKEEGEQFAKENG------LLFLEASARTAQNVEEAFI  161 (210)
Q Consensus       126 ~~------~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~  161 (210)
                      ..      ....+++..++...+      ++++++||++|.|+.++++
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            21      111233444554443      5799999999999999765

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.85  E-value=1.5e-21  Score=156.46  Aligned_cols=120  Identities=18%  Similarity=0.228  Sum_probs=92.3

Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCC----------hhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCC
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHA-NPNMSIMLVGNKCD  122 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D  122 (210)
                      .+.+.+|||+|++.+...|..+++.++++|||+|+++          ..++.+...|+..+.... ..+.|+|+++||.|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            4789999999999999999999999999999999999          678888888888876542 25799999999999


Q ss_pred             CCCCC----------------CCCHHHHHHHHH-----------HcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303          123 LAHRR----------------AVSKEEGEQFAK-----------ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       123 ~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~  173 (210)
                      +.++.                ..+.+++..++.           ...+.++++||+++.|++++|+++.+.+.+...+
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~  357 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK  357 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHH
Confidence            85321                256777877762           3357789999999999999999999988776543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.85  E-value=3.4e-20  Score=152.78  Aligned_cols=160  Identities=21%  Similarity=0.118  Sum_probs=107.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh------------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI------------   71 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------------   71 (210)
                      ..++|+|+|++|+|||||+++|.+..... ...++.+.+.....+.+++.  .+.+|||+|.......            
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            45899999999999999999999876421 22222234444455667775  4679999997433221            


Q ss_pred             hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-H----HcCCeEE
Q 028303           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-K----ENGLLFL  146 (210)
Q Consensus        72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~~~~  146 (210)
                      ...+++.+|++++|+|++++.+..+. .+...+..   .+.|+++++||+|+.+......++..+.. .    ...++++
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence            13467789999999999986655442 22222222   37899999999999765444444443222 2    2357899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 028303          147 EASARTAQNVEEAFIKTAAKILQN  170 (210)
Q Consensus       147 ~~sa~~~~~i~~~~~~l~~~~~~~  170 (210)
                      ++||++|.|++++|+.+.+.+...
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999998876553

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.85  E-value=1.3e-21  Score=161.45  Aligned_cols=153  Identities=21%  Similarity=0.187  Sum_probs=101.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhh--------HHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSIT--------RSY   75 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   75 (210)
                      ..++|+++|++|+|||||+|+|.+..+.. ...++.+.+.....+.+++.  .+.+|||||...+...+        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence            35799999999999999999999875432 22233344444444566664  57899999976554332        235


Q ss_pred             hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  155 (210)
                      ++.+|++++|+|++++.+... ..|+..+.     ..|+++|+||+|+.......  ....+.  ...+++++||+++.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            788999999999998766444 34444432     36999999999997644332  111111  356799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028303          156 VEEAFIKTAAKILQ  169 (210)
Q Consensus       156 i~~~~~~l~~~~~~  169 (210)
                      ++++++.|.+.+..
T Consensus       371 i~eL~~~i~~~~~~  384 (462)
T 3geh_A          371 IDSLETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.85  E-value=1.8e-21  Score=152.90  Aligned_cols=156  Identities=19%  Similarity=0.126  Sum_probs=103.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCceeEEEEEEEEECCEEEEEEEEecCCcc-h--------hhhhhHH
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-S--------FRSITRS   74 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~--------~~~~~~~   74 (210)
                      ...+|+++|++|+|||||+++|++..+.... .+..+.......+..+  ...+.+|||||.. .        +......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            3468999999999999999999998754321 1111111122223333  3578899999987 2        2233455


Q ss_pred             hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCC
Q 028303           75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTA  153 (210)
Q Consensus        75 ~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~  153 (210)
                      +++.+|++++|+|+++ -+  ....++.....  ..+.|+++++||+|+........+.+..+....+. .++++||+++
T Consensus        85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             CCCCEEEEEEEEETTC-CC--HHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            6788999999999977 22  22223322222  23689999999999865222222334445544565 6899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028303          154 QNVEEAFIKTAAKI  167 (210)
Q Consensus       154 ~~i~~~~~~l~~~~  167 (210)
                      .|++++++.|.+.+
T Consensus       160 ~~v~~l~~~i~~~l  173 (301)
T 1ega_A          160 LNVDTIAAIVRKHL  173 (301)
T ss_dssp             TTHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999887643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.85  E-value=2.9e-22  Score=165.85  Aligned_cols=180  Identities=16%  Similarity=0.055  Sum_probs=112.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC--------cchhhhhhHHhhc
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG--------QESFRSITRSYYR   77 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~~   77 (210)
                      ..+|+|+|.+|+|||||+|+|++..+... ..+.+.+.......+......+.+|||||        ++.+...+..+++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  101 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD  101 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence            47899999999999999999998766432 22334455444455555556789999999        7777788889999


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (210)
Q Consensus        78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  157 (210)
                      .+|++|+|+|..++.+..  ..++..+...  .+.|+++|+||+|+.+..    ....++........+++||+++.|+.
T Consensus       102 ~ad~il~VvD~~~~~~~~--d~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~~lg~~~~~~iSA~~g~gv~  173 (456)
T 4dcu_A          102 EADVIIFMVNGREGVTAA--DEEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFYSLGFGEPYPISGTHGLGLG  173 (456)
T ss_dssp             HCSEEEEEEESSSCSCHH--HHHHHHHHTT--CCSCEEEEEECC-------------CCSGGGSSSSEEECCTTTCTTHH
T ss_pred             hCCEEEEEEeCCCCCChH--HHHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHHHcCCCceEEeecccccchH
Confidence            999999999988754322  2333333322  478999999999985422    11122222212246799999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccccccCCcccccCCCCCCC
Q 028303          158 EAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPS  195 (210)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (210)
                      ++++.+.+.+... ..........+.+.+|....|+++
T Consensus       174 ~L~~~i~~~l~~~-~~~~~~~~~~ki~ivG~~~vGKSs  210 (456)
T 4dcu_A          174 DLLDAVAEHFKNI-PETKYNEEVIQFCLIGRPNVGKSS  210 (456)
T ss_dssp             HHHHHHHTTGGGS-CSSCCCTTCEEEEEECSTTSSHHH
T ss_pred             HHHHHHHhhcccc-cccccccccceeEEecCCCCCHHH
Confidence            9999987765321 111111112225667777766553

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.85  E-value=5e-21  Score=147.37  Aligned_cols=161  Identities=15%  Similarity=0.107  Sum_probs=104.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCC-ceeEEEEEEEEECCEEEEEEEEecCCcchhhh-----------h
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLT-IGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----------I   71 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~   71 (210)
                      ..++|+|+|++|+|||||+++|++..... ...++ .+.........+++  ..+.+|||||...+..           .
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            46899999999999999999999887433 33332 33344444455555  4588999999765422           2


Q ss_pred             hHHhhccccEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCeEEEEEe-cCCCCCCCCCCH-------HHHHHHHHHcC
Q 028303           72 TRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGN-KCDLAHRRAVSK-------EEGEQFAKENG  142 (210)
Q Consensus        72 ~~~~~~~~d~~i~V~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~~~  142 (210)
                      ...+++.+|++++|+|+++.... ..+..++..+.... ...|+++++| |+|+.... ...       +++..++...+
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~  176 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACG  176 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTT
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhC
Confidence            23467899999999999862221 22223333322111 1356777776 99997432 111       22444555554


Q ss_pred             Ce---E--EEEecCCCCCHHHHHHHHHHHHHH
Q 028303          143 LL---F--LEASARTAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       143 ~~---~--~~~sa~~~~~i~~~~~~l~~~~~~  169 (210)
                      ..   +  +++||+++.|++++|+.|.+.+..
T Consensus       177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          177 GRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            33   2  688999999999999999988765

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.85  E-value=3.3e-21  Score=152.50  Aligned_cols=120  Identities=17%  Similarity=0.233  Sum_probs=96.8

Q ss_pred             ECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECC----------ChhhHHHHHHHHHHHHhhcC-CCCeEEEEE
Q 028303           50 IDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHAN-PNMSIMLVG  118 (210)
Q Consensus        50 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~  118 (210)
                      +....+.+++||++|++.++.+|..+++.++++|||+|++          +..++.+...|+..+..... .++|+++++
T Consensus       156 ~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~  235 (340)
T 4fid_A          156 FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFL  235 (340)
T ss_dssp             EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEE
T ss_pred             EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEE
Confidence            3334578999999999999999999999999999999998          67778888888887765432 579999999


Q ss_pred             ecCCCCCCC---------------CCCHHHHHHHHHH-c--------------------------CCeEEEEecCCCCCH
Q 028303          119 NKCDLAHRR---------------AVSKEEGEQFAKE-N--------------------------GLLFLEASARTAQNV  156 (210)
Q Consensus       119 nK~D~~~~~---------------~~~~~~~~~~~~~-~--------------------------~~~~~~~sa~~~~~i  156 (210)
                      ||+|+.+++               ..+.+++.+++.. .                          .+.++++||++..++
T Consensus       236 NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv  315 (340)
T 4fid_A          236 NKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI  315 (340)
T ss_dssp             ECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred             ECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence            999984311               1245666555443 1                          366889999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          157 EEAFIKTAAKILQ  169 (210)
Q Consensus       157 ~~~~~~l~~~~~~  169 (210)
                      +.+|..+.+.+++
T Consensus       316 ~~vF~~v~~~Il~  328 (340)
T 4fid_A          316 KRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999988

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.84  E-value=6e-22  Score=159.18  Aligned_cols=167  Identities=16%  Similarity=0.276  Sum_probs=93.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCC--------CCceeEEEEEEEEECCEEEEEEEEecCCc-------ch
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHD--------LTIGVEFGARMVTIDGRPIKLQIWDTAGQ-------ES   67 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~   67 (210)
                      ...++|+|+|++|+|||||+++|++..... .+.        ++.+.......+..++..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            346899999999999999999987754332 221        33333333333444566778999999998       55


Q ss_pred             hhhhhH-------Hhhccc-------------cEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303           68 FRSITR-------SYYRGA-------------AGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR  126 (210)
Q Consensus        68 ~~~~~~-------~~~~~~-------------d~~i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~  126 (210)
                      +..++.       .+++.+             |+++|+++.. ..++..+. .++..+    ..++|+|+|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence            666655       555443             3455555532 23333333 233222    357899999999998754


Q ss_pred             CCCCH--HHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhccc
Q 028303          127 RAVSK--EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL  176 (210)
Q Consensus       127 ~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~  176 (210)
                      ..+..  +++..++...+++++++||+++.+ ++.|..+.+.+.+..|....
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~vv  240 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFSVV  240 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCEEC
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCEe
Confidence            43332  456666667789999999999999 89999999988877765443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1e-20  Score=139.05  Aligned_cols=115  Identities=22%  Similarity=0.325  Sum_probs=87.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcc--
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG--   78 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--   78 (210)
                      ...++|+|+|++|+|||||+++|.+..+...   ..++.+         .+.....+.+|||||++.+...+..++..  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            4568999999999999999999999876441   111111         12234568899999999888877777766  


Q ss_pred             --ccEEEEEEECC-ChhhHHHHHHHHHHHHhhc----CCCCeEEEEEecCCCCCCC
Q 028303           79 --AAGALLVYDIT-RRETFNHLSSWLEDARQHA----NPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        79 --~d~~i~V~d~~-~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~  127 (210)
                        +|++|+|+|++ +..++..+..|+..+....    ..+.|+++|+||+|+.+..
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence              89999999999 8889988888887775442    3579999999999997644

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.84  E-value=4.5e-23  Score=172.30  Aligned_cols=159  Identities=21%  Similarity=0.235  Sum_probs=113.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+++|++++|||||+++|.+..+.....++.+.++....+..++ ...+.||||||++.|...+..+++.+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            468899999999999999999998766555555544444433333322 2368899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC-HHHHHHH---HHHc--CCeEEEEecCCCCCHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-KEEGEQF---AKEN--GLLFLEASARTAQNVEE  158 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~sa~~~~~i~~  158 (210)
                      |+|++++........ +..+.   ..++|+++++||+|+.+..... ..+....   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~e~-l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTVES-IQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHHHH-HHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHHHH-HHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            999998654433322 22332   2478999999999996532211 1222111   1111  35799999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          159 AFIKTAAKIL  168 (210)
Q Consensus       159 ~~~~l~~~~~  168 (210)
                      +++.|...+.
T Consensus       158 Lle~I~~l~~  167 (537)
T 3izy_P          158 LAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhh
Confidence            9999887654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.84  E-value=2.4e-21  Score=158.15  Aligned_cols=148  Identities=18%  Similarity=0.146  Sum_probs=103.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhC--------CCCCCC--C-----CCceeEEEEEEEEECCEEEEEEEEecCCcchh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDK--------RFQPVH--D-----LTIGVEFGARMVTIDGRPIKLQIWDTAGQESF   68 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~--------~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   68 (210)
                      ...++|+++|++++|||||+++|++.        .+....  .     ...+.+.......++.....+.+|||||++.|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            45699999999999999999999873        111100  0     01223333333444444567899999999999


Q ss_pred             hhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCC---CCHHHHHHHHHHcC--
Q 028303           69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRA---VSKEEGEQFAKENG--  142 (210)
Q Consensus        69 ~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~--  142 (210)
                      ...+...+..+|++|+|+|++++... ....++..+...   ++| +++++||+|+.+...   ...+++.+++...+  
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  164 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  164 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence            99899999999999999999986543 334555554443   678 889999999974211   11234556666654  


Q ss_pred             ---CeEEEEecCCCCC
Q 028303          143 ---LLFLEASARTAQN  155 (210)
Q Consensus       143 ---~~~~~~sa~~~~~  155 (210)
                         ++++++||+++.|
T Consensus       165 ~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          165 GDEVPVIRGSALLALE  180 (405)
T ss_dssp             TTTSCEEECCHHHHHH
T ss_pred             ccCCCEEEccHHHhhh
Confidence               6799999999877

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.84  E-value=2.6e-21  Score=159.23  Aligned_cols=157  Identities=19%  Similarity=0.240  Sum_probs=104.4

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhC--CCCCCC---------------------------CCCceeEEEEEEEEEC
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVH---------------------------DLTIGVEFGARMVTID   51 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~   51 (210)
                      |.....++|+++|++++|||||+++|+..  .+....                           ....+.+.......++
T Consensus         1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~   80 (435)
T 1jny_A            1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE   80 (435)
T ss_dssp             ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred             CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence            55667899999999999999999999864  222110                           0001222222222344


Q ss_pred             CEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHH-------HHHHHHhhcCCCC-eEEEEEecCCC
Q 028303           52 GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-------WLEDARQHANPNM-SIMLVGNKCDL  123 (210)
Q Consensus        52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~-------~~~~~~~~~~~~~-p~ivv~nK~D~  123 (210)
                      .....+.+|||||++.|...+..++..+|++|+|+|+++ .+++....       ++..+..   .+. |+++++||+|+
T Consensus        81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~~iivviNK~Dl  156 (435)
T 1jny_A           81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDL  156 (435)
T ss_dssp             CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGG
T ss_pred             cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---cCCCeEEEEEEcccC
Confidence            445679999999999999999999999999999999998 55654332       2222222   244 68999999999


Q ss_pred             CCCC------CCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHHHH
Q 028303          124 AHRR------AVSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI  161 (210)
Q Consensus       124 ~~~~------~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~~  161 (210)
                      .+..      ....+++..++...+     ++++++||++|.|+.++++
T Consensus       157 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          157 TEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             SSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             CCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            6521      112345666776655     6799999999999986543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.84  E-value=6.1e-21  Score=155.33  Aligned_cols=158  Identities=18%  Similarity=0.136  Sum_probs=107.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCC-------CCCC-------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKR-------FQPV-------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS   70 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (210)
                      ..++|+++|++++|||||+++|++..       +...       .....+.+.......++.....+.+|||||++.|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999998741       1100       000122333333344444456789999999999988


Q ss_pred             hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCC---CCHHHHHHHHHHcC----
Q 028303           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRA---VSKEEGEQFAKENG----  142 (210)
Q Consensus        71 ~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~----  142 (210)
                      .+...+..+|++|+|+|++++...+.. .++..+..   .++| +++++||+|+.+...   ...+++++++...+    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            888999999999999999986433322 33333333   2678 689999999864211   11235666776655    


Q ss_pred             -CeEEEEecCCCCC----------HHHHHHHHHHH
Q 028303          143 -LLFLEASARTAQN----------VEEAFIKTAAK  166 (210)
Q Consensus       143 -~~~~~~sa~~~~~----------i~~~~~~l~~~  166 (210)
                       ++++++||+++.|          +.++++.|.+.
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~  192 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence             5899999999764          66666665543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.84  E-value=7.4e-21  Score=153.15  Aligned_cols=147  Identities=12%  Similarity=0.052  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      +|+++|++++|||||+++|+          ..+.+.......+......+.+|||||++.|.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            89999999999999999998          11222222223344444579999999999998888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEe-cCCCCCCCCCC--HHHHHHHHHHc---CCeEEE--EecCC---CCC
Q 028303           88 ITRRETFNHLSSWLEDARQHANPNMSI-MLVGN-KCDLAHRRAVS--KEEGEQFAKEN---GLLFLE--ASART---AQN  155 (210)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~--~~~~~~~~~~~---~~~~~~--~sa~~---~~~  155 (210)
                       ++. .......++..+...   ++|. ++++| |+|+ +.....  .+++++++...   .+++++  +||++   +.|
T Consensus        93 -~~g-~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQG-LDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TTC-CCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CCC-CcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             543 344455555555443   5777 88999 9998 432211  13445555443   368999  99999   999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028303          156 VEEAFIKTAAKILQN  170 (210)
Q Consensus       156 i~~~~~~l~~~~~~~  170 (210)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999998887654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.83  E-value=1e-20  Score=158.56  Aligned_cols=115  Identities=20%  Similarity=0.148  Sum_probs=82.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-----------------C-----CCCCceeEEEEEEEEECCEEEEEEEEec
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------V-----HDLTIGVEFGARMVTIDGRPIKLQIWDT   62 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~   62 (210)
                      ...+|+|+|++++|||||+++|+......                 .     .....+.......+.+.  .+.+.||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEEC
Confidence            46899999999999999999996211100                 0     00011112222223333  467899999


Q ss_pred             CCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      ||+..+...+..+++.+|++|+|+|++++........| ..+..   .++|+++|+||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            99999999999999999999999999987666555444 33332   3789999999999864

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.83  E-value=3.5e-20  Score=157.07  Aligned_cols=160  Identities=23%  Similarity=0.198  Sum_probs=106.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC----------------CEEEEEEEEecCCcchh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------------GRPIKLQIWDTAGQESF   68 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~   68 (210)
                      ..++|+++|++++|||||+++|.+..+........+.+........+                .....+.||||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            45899999999999999999998765433221111111111111110                01125889999999999


Q ss_pred             hhhhHHhhccccEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC------------HH-
Q 028303           69 RSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS------------KE-  132 (210)
Q Consensus        69 ~~~~~~~~~~~d~~i~V~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------------~~-  132 (210)
                      ...+...++.+|++|+|+|+++   +.++..+.    .+..   .++|+++++||+|+.......            .+ 
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9999888999999999999999   55544433    2222   378999999999996422110            01 


Q ss_pred             ----------HHHHHHHHcC---------------CeEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303          133 ----------EGEQFAKENG---------------LLFLEASARTAQNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       133 ----------~~~~~~~~~~---------------~~~~~~sa~~~~~i~~~~~~l~~~~~~~~  171 (210)
                                +....+...+               ++++++||++|.|+++++++|...+....
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~  220 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence                      1111222222               37999999999999999999988776443

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.83  E-value=4.8e-20  Score=151.65  Aligned_cols=154  Identities=19%  Similarity=0.155  Sum_probs=104.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCC---CCC---------CCCC-------------------ceeEEEEEEEEECC
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF---QPV---------HDLT-------------------IGVEFGARMVTIDG   52 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~---------~~~~-------------------~~~~~~~~~~~~~~   52 (210)
                      ...++|+++|++++|||||+++|++...   ...         ...+                   .+.+.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            3568999999999999999999986541   100         0011                   01111112222333


Q ss_pred             EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-eEEEEEecCCCCCCCCC--
Q 028303           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-SIMLVGNKCDLAHRRAV--  129 (210)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~~--  129 (210)
                      ....+.+|||||++.|...+..++..+|++|+|+|++++... ....++..+...   +. |+++|+||+|+.+....  
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~  177 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF  177 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence            345789999999999999888899999999999999986432 233344433332   34 68999999999753211  


Q ss_pred             --CHHHHHHHHHHcC-----CeEEEEecCCCCCHHHHHH
Q 028303          130 --SKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI  161 (210)
Q Consensus       130 --~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~~  161 (210)
                        ..+++..++...+     ++++++||++|.|++++++
T Consensus       178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence              1244556666666     6799999999999988543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.83  E-value=1.2e-19  Score=146.68  Aligned_cols=119  Identities=13%  Similarity=0.162  Sum_probs=96.9

Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCC----------hhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCC
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDL  123 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~  123 (210)
                      +.+.+|||+|++.+...|..+++.++++|||||+++          ..++.++..|+..+.... ..++|+++|+||+|+
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL  296 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  296 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence            789999999999999999999999999999999999          888999999998887653 367999999999998


Q ss_pred             CCCCC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEEecCCCCCHHHHH
Q 028303          124 AHRRA---V---------------------------SKEEGEQFA-----KE--------NGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus       124 ~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~sa~~~~~i~~~~  160 (210)
                      .+.+.   .                           +.+++..++     ..        ..+.++++||+++.||+++|
T Consensus       297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF  376 (402)
T 1azs_C          297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF  376 (402)
T ss_dssp             HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred             hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence            43221   1                           135565553     22        24567899999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 028303          161 IKTAAKILQNIQE  173 (210)
Q Consensus       161 ~~l~~~~~~~~~~  173 (210)
                      ..+.+.++....+
T Consensus       377 ~~v~~~I~~~~l~  389 (402)
T 1azs_C          377 NDCRDIIQRMHLR  389 (402)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9998888766543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.82  E-value=5.2e-21  Score=158.60  Aligned_cols=155  Identities=19%  Similarity=0.195  Sum_probs=90.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCC--CCC-----------------------------CCCCCceeEEEEEEEEECC
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--FQP-----------------------------VHDLTIGVEFGARMVTIDG   52 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~   52 (210)
                      ...++|+++|+.++|||||+++|+...  +..                             +.....+.......+..+ 
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~-  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE-  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence            456899999999999999999997521  110                             000111112211223333 


Q ss_pred             EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCC-
Q 028303           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR-  127 (210)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~-  127 (210)
                       ...+.||||||++.|...+...+..+|++|+|+|++++.   +|....++...+......++| +|+++||+|+.... 
T Consensus       120 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          120 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             -CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence             357899999999999998888999999999999999863   222111222222222223677 99999999995421 


Q ss_pred             -----CCCHHHHHHHHHHc-------CCeEEEEecCCCCCHHHHH
Q 028303          128 -----AVSKEEGEQFAKEN-------GLLFLEASARTAQNVEEAF  160 (210)
Q Consensus       128 -----~~~~~~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~  160 (210)
                           ....+++..++...       +++++++||++|.|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 11123456666655       4569999999999998766

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.81  E-value=7.4e-20  Score=162.27  Aligned_cols=159  Identities=18%  Similarity=0.141  Sum_probs=106.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCC-------CCC-------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR-------FQP-------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      ...++|+++|++++|||||+++|++..       +..       ....+.+.+.....+.++.....+.||||||++.|.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            456999999999999999999998641       100       011122333333333444445678999999999999


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCC---CCHHHHHHHHHHcC---
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRA---VSKEEGEQFAKENG---  142 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~---  142 (210)
                      ......+..+|++|+|+|++++... ....++..+...   ++| +|+++||+|+.+...   ...+++.+++...+   
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~  449 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG  449 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence            8888999999999999999986432 233444444433   678 789999999975221   11245666676655   


Q ss_pred             --CeEEEEecCCC--------CCHHHHHHHHHHH
Q 028303          143 --LLFLEASARTA--------QNVEEAFIKTAAK  166 (210)
Q Consensus       143 --~~~~~~sa~~~--------~~i~~~~~~l~~~  166 (210)
                        ++++++||+++        .|+.++++.|.+.
T Consensus       450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~  483 (1289)
T 3avx_A          450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSY  483 (1289)
T ss_dssp             TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             cceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence              68999999998        3466666665543

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.4e-20  Score=160.34  Aligned_cols=156  Identities=14%  Similarity=0.085  Sum_probs=100.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC------------C-----------------CceeEEEEEEEEECCEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD------------L-----------------TIGVEFGARMVTIDGRP   54 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~------------~-----------------~~~~~~~~~~~~~~~~~   54 (210)
                      ...++|+++|++++|||||+++|++........            .                 ..+.+.......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            346899999999999999999998663221110            0                 01222222222233344


Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhH---HHHHHHHHHHHhhcCCC-CeEEEEEecCCCCCCCCCC
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLSSWLEDARQHANPN-MSIMLVGNKCDLAHRRAVS  130 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~---~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~~~~  130 (210)
                      ..+.||||||++.+...+..+++.+|++|+|+|++++...   .....+...+......+ .|+|+|+||+|+.+.....
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~  324 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR  324 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence            6789999999999999999999999999999999875310   00111222221111224 3599999999997533222


Q ss_pred             HH----HHHHHHHHc-----CCeEEEEecCCCCCHHHH
Q 028303          131 KE----EGEQFAKEN-----GLLFLEASARTAQNVEEA  159 (210)
Q Consensus       131 ~~----~~~~~~~~~-----~~~~~~~sa~~~~~i~~~  159 (210)
                      .+    ++..++...     .++++++||++|.|+.++
T Consensus       325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            22    333344433     358999999999999876

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.80  E-value=2.7e-19  Score=133.14  Aligned_cols=156  Identities=15%  Similarity=0.145  Sum_probs=98.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch----------hhhhhH
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRSITR   73 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~   73 (210)
                      ....+|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++   .+.+|||||...          +.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            4557999999999999999999998764443344444444333333433   467999999742          233333


Q ss_pred             Hhh---ccccEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHcC--Ce
Q 028303           74 SYY---RGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENG--LL  144 (210)
Q Consensus        74 ~~~---~~~d~~i~V~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~  144 (210)
                      .++   ..++++++|+|++++.+...  +..|+   ..   .+.|+++++||+|+....+  ...+.+..++....  +.
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~  174 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  174 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence            344   46899999999988654432  22222   11   3689999999999754211  11244555555543  46


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHH
Q 028303          145 FLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       145 ~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      ++++|++++.+++++++.|.+.+.
T Consensus       175 ~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          175 VETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             eEEEeecCCCCHHHHHHHHHHHHh
Confidence            789999999999999999887653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.80  E-value=7.2e-20  Score=143.47  Aligned_cols=161  Identities=16%  Similarity=0.169  Sum_probs=101.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC------CCc-----------------e---eEEE--------------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD------LTI-----------------G---VEFG--------------   44 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~------~~~-----------------~---~~~~--------------   44 (210)
                      ..++|+|+|.+|+|||||+++|++..+.+...      ++.                 +   .+..              
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            45799999999999999999999988753221      110                 0   0000              


Q ss_pred             ---------EEEEEEC-CEEEEEEEEecCCcc-------------hhhhhhHHhhccccEEE-EEEECCChhhHHHHHHH
Q 028303           45 ---------ARMVTID-GRPIKLQIWDTAGQE-------------SFRSITRSYYRGAAGAL-LVYDITRRETFNHLSSW  100 (210)
Q Consensus        45 ---------~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~V~d~~~~~s~~~~~~~  100 (210)
                               ...+.+. .....+.+|||||..             .+......+++.++.++ +|+|+++..+......+
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence                     0000000 002468999999953             34556777888888666 79999875443333233


Q ss_pred             HHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc--C-CeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          101 LEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--G-LLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       101 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~-~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      ...+   ...+.|+++|+||+|+.+......+.+.......  + .+++++||+++.|++++++.|.+...
T Consensus       185 ~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~  252 (299)
T 2aka_B          185 AKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK  252 (299)
T ss_dssp             HHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred             HHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence            3333   2347899999999999764432333222110011  2 35789999999999999999887433

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.80  E-value=1.7e-19  Score=149.12  Aligned_cols=154  Identities=18%  Similarity=0.178  Sum_probs=102.5

Q ss_pred             CCC-CceEEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------------------------CCCCceeEEEEEEE
Q 028303            1 MSY-DYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV-----------------------------HDLTIGVEFGARMV   48 (210)
Q Consensus         1 m~~-~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~   48 (210)
                      |.. ...++|+++|++++|||||+++|++.  .+...                             .....+.+...  .
T Consensus         1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~--~   78 (458)
T 1f60_A            1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL--W   78 (458)
T ss_dssp             -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC--E
T ss_pred             CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE--E
Confidence            553 45699999999999999999999864  11110                             00111222222  2


Q ss_pred             EECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCe-EEEEEecC
Q 028303           49 TIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLSSWLEDARQHANPNMS-IMLVGNKC  121 (210)
Q Consensus        49 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~  121 (210)
                      .++.....+.+|||||++.|...+..++..+|++|+|+|++++..   |+   ....++..+..   .++| +|+++||+
T Consensus        79 ~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~  155 (458)
T 1f60_A           79 KFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKM  155 (458)
T ss_dssp             EEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECG
T ss_pred             EEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcc
Confidence            233344679999999999999999999999999999999997632   21   22223322222   2565 89999999


Q ss_pred             CCCCCCC----CCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHH
Q 028303          122 DLAHRRA----VSKEEGEQFAKENG-----LLFLEASARTAQNVEEA  159 (210)
Q Consensus       122 D~~~~~~----~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~  159 (210)
                      |+.+...    ...+++..++...+     ++++++||+++.|+.++
T Consensus       156 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          156 DSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            9963211    11234555666554     68999999999998754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.79  E-value=1.5e-21  Score=161.83  Aligned_cols=155  Identities=18%  Similarity=0.194  Sum_probs=105.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..++|+++|++++|||||+++|.+..+.....+..+.+.....+..++  ..+.||||||++.|...+...+..+|++|+
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            467899999999999999999987654433333223222222222333  467899999999999999889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CCHH--HHHHHHHHc--CCeEEEEecCCCCCHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKE--EGEQFAKEN--GLLFLEASARTAQNVEE  158 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~--~~~~~~~~~--~~~~~~~sa~~~~~i~~  158 (210)
                      |+|++++...... .++..+..   .++|+++++||+|+.+...  +..+  +...++..+  .++++++||++|.|+++
T Consensus        81 VVda~~g~~~qT~-e~l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e  156 (501)
T 1zo1_I           81 VVAADDGVMPQTI-EAIQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE  156 (501)
T ss_dssp             EEETTTBSCTTTH-HHHHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred             EeecccCccHHHH-HHHHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence            9999884321111 22222222   3789999999999964211  1000  000011122  26899999999999999


Q ss_pred             HHHHHHH
Q 028303          159 AFIKTAA  165 (210)
Q Consensus       159 ~~~~l~~  165 (210)
                      +|+.|..
T Consensus       157 Lle~I~~  163 (501)
T 1zo1_I          157 LLDAILL  163 (501)
T ss_dssp             HHHHTTT
T ss_pred             hhhhhhh
Confidence            9999864

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.78  E-value=2.5e-18  Score=147.96  Aligned_cols=117  Identities=16%  Similarity=0.117  Sum_probs=82.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----------------CceeEEEEEEEEECCEEEEEEEEecCCcch
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----------------TIGVEFGARMVTIDGRPIKLQIWDTAGQES   67 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   67 (210)
                      +...+|+++|++|+|||||+++|.+.........                ..+.++......+....+.+++|||||++.
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            4567999999999999999999985432211100                011222222222333356789999999999


Q ss_pred             hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      +...+..+++.+|++++|+|++++..... ..++..+...   ++|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence            99999999999999999999987644332 3444444432   78999999999986

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.78  E-value=4.4e-18  Score=131.13  Aligned_cols=126  Identities=17%  Similarity=0.128  Sum_probs=84.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhc------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR------   77 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------   77 (210)
                      ..++|+|+|++|+|||||+++|++....... .+..+.......+..++  ..+.+|||||++.+......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            4699999999999999999999998753322 22223333334445555  47889999999877654444433      


Q ss_pred             ---cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCC--CeEEEEEecCCCCCCCCCCHH
Q 028303           78 ---GAAGALLVYDITRRETFNHLSSWLEDARQHANPN--MSIMLVGNKCDLAHRRAVSKE  132 (210)
Q Consensus        78 ---~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~~~~~  132 (210)
                         .+|++++|++++.......-..|+..+......+  .|+++|+||+|+........+
T Consensus       113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e  172 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE  172 (262)
T ss_dssp             TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred             hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence               7899999999876442222235566665543322  499999999998654444433

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.76  E-value=5.3e-18  Score=137.97  Aligned_cols=160  Identities=16%  Similarity=0.097  Sum_probs=108.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch----hhhhhH---Hhhccc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSITR---SYYRGA   79 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~---~~~~~~   79 (210)
                      ..|+|+|++|||||||+++|++........+..+.......+.+++ ...+.+||+||...    +..+..   ..+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            3589999999999999999998743211112112222233344443 24678999999632    112222   234579


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303           80 AGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (210)
Q Consensus        80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  157 (210)
                      +.+++|+|++ ...+..+..+...+.....  ...|.++++||+|+...  ...+++.+.+...+..++.+||+++.+++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            9999999998 4556666666665544321  25799999999998653  23344555555567889999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQN  170 (210)
Q Consensus       158 ~~~~~l~~~~~~~  170 (210)
                      ++++.|.+.+...
T Consensus       314 eL~~~i~~~l~~~  326 (416)
T 1udx_A          314 ALKEALHALVRST  326 (416)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999888653

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.76  E-value=9.2e-19  Score=140.81  Aligned_cols=155  Identities=17%  Similarity=0.159  Sum_probs=102.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEE---------------------------------------
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR---------------------------------------   46 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------   46 (210)
                      ..+|+|+|++|||||||+++|++..+.+....+.+......                                       
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            45999999999999999999999877444333221000000                                       


Q ss_pred             -------------EEEE-CCEEEEEEEEecCCcchh-------------hhhhHHhhccccEEEEEEECCChhhHHHHHH
Q 028303           47 -------------MVTI-DGRPIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLSS   99 (210)
Q Consensus        47 -------------~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~   99 (210)
                                   .+.+ ......+.+|||||...+             ..+...+++.+|++|+|+|..+.+...  ..
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~  191 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD  191 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred             hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence                         0000 001225789999997765             557778899999999999876533211  23


Q ss_pred             HHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303          100 WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus       100 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      |+..+......+.|+++|+||+|+.+......+.+..+....+.+|++++++.+.++++.+..
T Consensus       192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            444444444457899999999999765554444444444445678999999987776655443

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.76  E-value=7e-18  Score=145.78  Aligned_cols=162  Identities=14%  Similarity=0.170  Sum_probs=106.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCcee------------EEE---------------------------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGV------------EFG---------------------------   44 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~------------~~~---------------------------   44 (210)
                      ..++|+|+|.+|+|||||+|+|++....+... +++..            +..                           
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            46899999999999999999999987655322 22100            000                           


Q ss_pred             --------------EEEEEECCEE--EEEEEEecCCcch---hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHH
Q 028303           45 --------------ARMVTIDGRP--IKLQIWDTAGQES---FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR  105 (210)
Q Consensus        45 --------------~~~~~~~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~  105 (210)
                                    ...+.++...  ..+.||||||...   ....+..+++.+|++++|+|++++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                          0001111100  2478999999654   33456678899999999999998877766655544433


Q ss_pred             hhcCCCCeEEEEEecCCCCCCCCCCHH----------HHHHH----HHH---------cCCeEEEEecC-----------
Q 028303          106 QHANPNMSIMLVGNKCDLAHRRAVSKE----------EGEQF----AKE---------NGLLFLEASAR-----------  151 (210)
Q Consensus       106 ~~~~~~~p~ivv~nK~D~~~~~~~~~~----------~~~~~----~~~---------~~~~~~~~sa~-----------  151 (210)
                      .   .+.|+++|+||+|+......+.+          .+...    ...         ...+++++||+           
T Consensus       228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            2   36789999999998643311111          12111    111         12368999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHHH
Q 028303          152 ---TAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       152 ---~~~~i~~~~~~l~~~~~~  169 (210)
                         ++.|++++++.|.+.+..
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHHH
Confidence               999999999998886654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.76  E-value=3.9e-20  Score=157.08  Aligned_cols=149  Identities=23%  Similarity=0.205  Sum_probs=81.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCCceeEEEEEEEEECC
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF-------------------------------QPVHDLTIGVEFGARMVTIDG   52 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   52 (210)
                      ...++|+++|++++|||||+++|+....                               ..+..  .+++.......+..
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~--~GiTid~~~~~~~~  252 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA--RGVTMDVASTTFES  252 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhc--CCeeEEeeEEEEEe
Confidence            3568999999999999999999964210                               00011  12233333333344


Q ss_pred             EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChh---hH---HHHHHHHHHHHhhcCCCCe-EEEEEecCCCCC
Q 028303           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TF---NHLSSWLEDARQHANPNMS-IMLVGNKCDLAH  125 (210)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  125 (210)
                      ....+.||||||++.|...+...+..+|++|+|+|++++.   .+   ......+..+...   ++| +|+|+||+|+.+
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~  329 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMS  329 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGT
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEecccccc
Confidence            4567899999999999988888899999999999998642   11   1112222222222   565 899999999865


Q ss_pred             CCCCC----HHHHHHHH-HHcCC-----eEEEEecCCCCCHH
Q 028303          126 RRAVS----KEEGEQFA-KENGL-----LFLEASARTAQNVE  157 (210)
Q Consensus       126 ~~~~~----~~~~~~~~-~~~~~-----~~~~~sa~~~~~i~  157 (210)
                      .....    .+++..++ ...++     +++++||++|.|+.
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            22111    12334444 33343     69999999999998

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.75  E-value=7.1e-18  Score=145.63  Aligned_cols=116  Identities=17%  Similarity=0.182  Sum_probs=82.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCC--C------CCC----------CCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--F------QPV----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (210)
                      +...+|+|+|++|+|||||+++|+...  +      ...          .....+.......+.+.  .+.+.+|||||+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTPG~   87 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTPGH   87 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECcCc
Confidence            467899999999999999999998421  1      000          00111122222223333  467899999999


Q ss_pred             chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      ..+...+..+++.+|++|+|+|++++.+......|.. +..   .++|+++|+||+|+..
T Consensus        88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            9999999999999999999999999877666655543 333   2789999999999864

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.75  E-value=1.1e-17  Score=140.24  Aligned_cols=117  Identities=17%  Similarity=0.148  Sum_probs=78.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------------------CCCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------------DLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (210)
                      ...+|+++|++++|||||+++|+........                    ....+.+.......+....+.+.+|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            4689999999999999999999864211100                    00111221111122223346789999999


Q ss_pred             cchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      ++.|......+++.+|++|+|+|++++.... ...++..+.   ..++|+++++||+|+..
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            9999988889999999999999999864322 222333222   24789999999999864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.75  E-value=2.7e-19  Score=140.39  Aligned_cols=164  Identities=16%  Similarity=0.258  Sum_probs=86.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhC-CCCCCC--------CCCceeEEEEEEEEECCEEEEEEEEecCCc-------ch
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDK-RFQPVH--------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQ-------ES   67 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~   67 (210)
                      ...++|+|+|++|+|||||+++|.+. .+....        .++.........+..++....+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            35689999999999999999999875 333222        111111111111222344568899999998       44


Q ss_pred             hhhhhH-------Hhhccc-------------cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303           68 FRSITR-------SYYRGA-------------AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        68 ~~~~~~-------~~~~~~-------------d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                      +..+..       .+++..             ++++|+.+.+.. +++.+.  ...+... ..+.|+++|+||.|+....
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~~  171 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTLK  171 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCHH
Confidence            554443       343332             345555554321 122222  1222222 2367999999999986533


Q ss_pred             CC--CHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028303          128 AV--SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       128 ~~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~  172 (210)
                      ..  ..+++.+++..++++++++||+++ +++++|..+.+.+.+..|
T Consensus       172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p  217 (301)
T 2qnr_A          172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP  217 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence            32  235677888889999999999999 999999999888764433

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.75  E-value=7.1e-18  Score=130.48  Aligned_cols=125  Identities=14%  Similarity=0.113  Sum_probs=80.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhH-------Hh-
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR-------SY-   75 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~-   75 (210)
                      ..++|+|+|.+|+|||||+++|++..+..... ...+.......+...  ...+.+|||||...+.....       .+ 
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            46999999999999999999999887643221 111222222223333  45789999999876543221       11 


Q ss_pred             -hccccEEEEEEECCChhhHHH-HHHHHHHHHhhcCCC--CeEEEEEecCCCCCCCCCCHH
Q 028303           76 -YRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPN--MSIMLVGNKCDLAHRRAVSKE  132 (210)
Q Consensus        76 -~~~~d~~i~V~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~~~~~  132 (210)
                       .+.+|++++|+|++... +.. ...|+..+......+  .|+++|+||+|+........+
T Consensus       116 ~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~  175 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD  175 (270)
T ss_dssp             TTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred             hcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence             34789999999987532 222 235555555443322  699999999998654443443

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.74  E-value=1.3e-17  Score=131.65  Aligned_cols=161  Identities=14%  Similarity=0.159  Sum_probs=95.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcee-----EEEEE---------------------------------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV-----EFGAR---------------------------------   46 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-----~~~~~---------------------------------   46 (210)
                      ..++|+|+|++|+|||||+|+|++..+.+......+.     .....                                 
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI  102 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence            4579999999999999999999998763322110000     00000                                 


Q ss_pred             -------------------EEE-ECCEEEEEEEEecCCcch-------------hhhhhHHhhccccEEEEEEECCChh-
Q 028303           47 -------------------MVT-IDGRPIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRRE-   92 (210)
Q Consensus        47 -------------------~~~-~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~V~d~~~~~-   92 (210)
                                         .+. .......+.+|||||...             +......+++.+|++++|+|..+.. 
T Consensus       103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~  182 (315)
T 1jwy_B          103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (315)
T ss_dssp             HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence                               000 001123688999999653             4456777889999999999974322 


Q ss_pred             hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC------CCCHHHHHHHHHHH
Q 028303           93 TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART------AQNVEEAFIKTAAK  166 (210)
Q Consensus        93 s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~------~~~i~~~~~~l~~~  166 (210)
                      .......+...+   ...+.|+++|+||+|+........+.+.......+..++++++..      +.|+.++++.+.+.
T Consensus       183 ~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~  259 (315)
T 1jwy_B          183 ANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILY  259 (315)
T ss_dssp             TTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHH
Confidence            111111222222   234789999999999975443223322211111225577776554      67888888877665


Q ss_pred             HH
Q 028303          167 IL  168 (210)
Q Consensus       167 ~~  168 (210)
                      +.
T Consensus       260 ~~  261 (315)
T 1jwy_B          260 FK  261 (315)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.73  E-value=1.3e-16  Score=138.05  Aligned_cols=118  Identities=18%  Similarity=0.139  Sum_probs=82.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCC--CCCC-----------C-----CCCceeEEEEEEEEEC-----CEEEEEEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV-----------H-----DLTIGVEFGARMVTID-----GRPIKLQIW   60 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~~i~   60 (210)
                      +...+|+|+|+.++|||||+++|+...  +...           +     ....+.......+.+.     +..+.++||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            456899999999999999999997531  1100           0     0111122222223332     233789999


Q ss_pred             ecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        61 D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      ||||+..|...+..+++.+|++|+|+|++++........|. .+..   .++|+++|+||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCEEEEEeCCCccc
Confidence            99999999999999999999999999999876554444443 2322   3789999999999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.73  E-value=3.6e-17  Score=141.32  Aligned_cols=116  Identities=20%  Similarity=0.205  Sum_probs=82.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhC--CCCCC---C-------------CCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV---H-------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (210)
                      +...+|+|+|++|+|||||+++|+..  .+...   .             ....+.......+.+.  ...+.||||||+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~   85 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGH   85 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCC
Confidence            46789999999999999999999852  21100   0             0111111112223334  367899999999


Q ss_pred             chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      ..+...+..+++.+|++++|+|++++.+......|.. +..   .+.|+++|+||+|+..
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            9999999999999999999999998776666555543 333   2789999999999864

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.72  E-value=4.5e-18  Score=138.03  Aligned_cols=85  Identities=22%  Similarity=0.244  Sum_probs=47.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeE--EEEEEEE-------------------ECC-EEEEEEEEecCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMVT-------------------IDG-RPIKLQIWDTAG   64 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~-------------------~~~-~~~~~~i~D~~G   64 (210)
                      ++|+++|.+|+|||||+|+|++........+..+.+  .....+.                   +++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            589999999999999999999886322222211222  2211111                   232 246899999999


Q ss_pred             cch----hhhhhH---HhhccccEEEEEEECCCh
Q 028303           65 QES----FRSITR---SYYRGAAGALLVYDITRR   91 (210)
Q Consensus        65 ~~~----~~~~~~---~~~~~~d~~i~V~d~~~~   91 (210)
                      ...    ...+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    222333   346899999999999875

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.71  E-value=1.1e-17  Score=136.27  Aligned_cols=157  Identities=17%  Similarity=0.229  Sum_probs=78.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhh-------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------   69 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------   69 (210)
                      ..++|+|+|++|+|||||+++|.+..+....        ..+.........+...+....+.+||++|...+.       
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            4588999999999999999999988763221        1121111111111223344578999999976431       


Q ss_pred             hh------------------hHHhhccccEEEEEEECCCh-hhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303           70 SI------------------TRSYYRGAAGALLVYDITRR-ETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (210)
Q Consensus        70 ~~------------------~~~~~~~~d~~i~V~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  129 (210)
                      .+                  ...++..+++.+++|+.... .++.... .|+..+.    .++|+|+|+||+|+.....+
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev  185 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEEC  185 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHH
Confidence            11                  11233444443444433321 2222322 4444443    37899999999998654433


Q ss_pred             CH--HHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303          130 SK--EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus       130 ~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      ..  +++.+.+...+++++++|++++.++.++|..+..
T Consensus       186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~  223 (418)
T 2qag_C          186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD  223 (418)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence            32  5677778888999999999999999887766654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.69  E-value=5.9e-18  Score=132.87  Aligned_cols=133  Identities=16%  Similarity=0.130  Sum_probs=107.4

Q ss_pred             HHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChh-hHHHHH
Q 028303           21 CLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLS   98 (210)
Q Consensus        21 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~-s~~~~~   98 (210)
                      +|+.++..+.|. ..+.+|.+..+. ..+..++   .+.+||+  ++.+..++..+++++|++|+|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688888888887 788888885554 2222222   6889999  8999999999999999999999999987 688888


Q ss_pred             HHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHHHHH
Q 028303           99 SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        99 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      .|+..+..   .++|+++|+||+|+.+...+  +++.+++..+.  .+++++||+++.|++++|..+.
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            89887654   37899999999999654322  45667777766  8999999999999999998765

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.67  E-value=4.1e-17  Score=122.31  Aligned_cols=156  Identities=16%  Similarity=0.101  Sum_probs=95.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEE------------EEEEEECC------------------EE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG------------ARMVTIDG------------------RP   54 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~------------------~~   54 (210)
                      ...+|+++|++|+|||||+++|...............+..            .....++.                  ..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            4578999999999999999999865321111100000000            00011111                  23


Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG  134 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  134 (210)
                      ..+.+|||+|+-....   .+....+.+++|+|+.+....  ...+..   ..   +.|+++|+||+|+........+++
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~---~~---~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPE---IF---RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHH---HH---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhh---hh---hcCCEEEEecccCCcchhhHHHHH
Confidence            4678999998511110   111256789999998875321  111111   11   468899999999864333455666


Q ss_pred             HHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303          135 EQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       135 ~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~  171 (210)
                      ...+...  .++++++|++++.|+++++++|.+.+....
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            6666653  478999999999999999999988775543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.66  E-value=8.9e-16  Score=129.24  Aligned_cols=115  Identities=18%  Similarity=0.127  Sum_probs=81.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCC------------------C----CCCCCCCceeEEEEEEEEECCEEEEEEEEec
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKR------------------F----QPVHDLTIGVEFGARMVTIDGRPIKLQIWDT   62 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   62 (210)
                      +.=+|+|+|+.++|||||..+|+...                  +    ..+....+++......+.+.  .+.++|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~--~~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR--DRVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET--TEEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC--CEEEEEEeC
Confidence            34689999999999999999996211                  0    00111111222222233444  467899999


Q ss_pred             CCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      ||+.+|..-....++.+|++|+|+|+..+........|. .+..+   ++|.++++||+|...
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~~---~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRMR---ATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHHT---TCCEEEEEECTTSCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHHh---CCceEEEEecccchh
Confidence            999999999999999999999999999876555554453 33333   799999999999754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.66  E-value=2.8e-15  Score=119.59  Aligned_cols=146  Identities=16%  Similarity=0.154  Sum_probs=91.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEecCCcchhh--
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQESFR--   69 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~--   69 (210)
                      ++|+++|.+|+|||||+|+|++........+..+.......+.+++.               ...+.+|||||...+.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999987643322222222222222344442               1468999999987543  


Q ss_pred             --hh---hHHhhccccEEEEEEECCCh----------hhHHHHHHHHHHH------------------------------
Q 028303           70 --SI---TRSYYRGAAGALLVYDITRR----------ETFNHLSSWLEDA------------------------------  104 (210)
Q Consensus        70 --~~---~~~~~~~~d~~i~V~d~~~~----------~s~~~~~~~~~~~------------------------------  104 (210)
                        .+   ....++.+|++++|+|+++.          +.+.++..+...+                              
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              22   33457899999999999862          2222222111111                              


Q ss_pred             ----------H-------------------hh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC
Q 028303          105 ----------R-------------------QH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART  152 (210)
Q Consensus       105 ----------~-------------------~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  152 (210)
                                .                   .. .....|+++++|+.|..-......+.++.++...+.+++++||+.
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence                      0                   00 012489999999999642222345677788888889999999763

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.63  E-value=8.3e-16  Score=135.33  Aligned_cols=117  Identities=21%  Similarity=0.242  Sum_probs=85.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCC------------CCC----CCC--CCceeEEEEEEEE------------ECCE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR------------FQP----VHD--LTIGVEFGARMVT------------IDGR   53 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~----~~~--~~~~~~~~~~~~~------------~~~~   53 (210)
                      +...+|+|+|+.++|||||+++|+...            +..    +..  .|.........+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            456899999999999999999998641            100    001  1222222222222            2344


Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      .+.++||||||+..|...+..+++.+|++|+|+|++++.+......|.....    .++|+++|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence            7889999999999999999999999999999999999877777655554332    368999999999985

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.62  E-value=3.5e-16  Score=125.44  Aligned_cols=158  Identities=16%  Similarity=0.143  Sum_probs=93.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEE----------------------------------------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG----------------------------------------   44 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------   44 (210)
                      ..++|+|+|.+++|||||+++|++..+.+......+....                                        
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999998875322111000000                                        


Q ss_pred             ---------EEEEEEC-CEEEEEEEEecCCcc-------------hhhhhhHHhhcccc-EEEEEEECCChhhHHHHHHH
Q 028303           45 ---------ARMVTID-GRPIKLQIWDTAGQE-------------SFRSITRSYYRGAA-GALLVYDITRRETFNHLSSW  100 (210)
Q Consensus        45 ---------~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~~i~V~d~~~~~s~~~~~~~  100 (210)
                               ...+.+. .....+.||||||..             .+..+...+++..+ ++++|+|++.......   +
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---~  186 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---A  186 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---H
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---H
Confidence                     0001110 012468999999953             34456666776555 5555667665322111   2


Q ss_pred             HHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH--HHHcC-CeEEEEecCCCCCHHHHHHHHHH
Q 028303          101 LEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF--AKENG-LLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus       101 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      ...+......+.|+++|+||+|+.+......+.....  ....+ .+++++||+++.|++++++.+.+
T Consensus       187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2223333345789999999999975433222211100  00012 24678999999999999998876

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.61  E-value=1.3e-17  Score=125.42  Aligned_cols=153  Identities=18%  Similarity=0.178  Sum_probs=91.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEE------------EEEEEEC-CEE-----------------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG------------ARMVTID-GRP-----------------   54 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~-----------------   54 (210)
                      ..++|+|+|++|+|||||+++|....+...+..+...++.            ...+.++ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999987654433334333322            1112221 111                 


Q ss_pred             --EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028303           55 --IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE  132 (210)
Q Consensus        55 --~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  132 (210)
                        ..+.++|++|.-...   ..+-...+..+.|+|+........  .+...   .   ..|.++|+||+|+.+......+
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M---KTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H---TTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH---h---hcCCEEEEeccccCchhHHHHH
Confidence              134445555421000   011112345566677532211100  00011   1   4688999999998654334567


Q ss_pred             HHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          133 EGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       133 ~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      ++..++...  +++++++||+++.|++++|+.|.+.+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            777777654  578999999999999999999987764

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.59  E-value=1.7e-15  Score=127.65  Aligned_cols=119  Identities=18%  Similarity=0.214  Sum_probs=79.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCCceeEEEEEE---------------------------------
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDLTIGVEFGARM---------------------------------   47 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~---------------------------------   47 (210)
                      +..++|+|+|.+|+|||||+|+|++..+.   ....+++........                                 
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            45689999999999999999999998764   122222111000000                                 


Q ss_pred             ---EEECCE-EEEEEEEecCCcch-----------hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q 028303           48 ---VTIDGR-PIKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM  112 (210)
Q Consensus        48 ---~~~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~  112 (210)
                         ..++.. ...+.+|||||...           +...+..++..+|++++|+|+++.........++..+..   .+.
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~  219 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HED  219 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCC
Confidence               000000 02578999999764           456677788999999999999885444445555555433   357


Q ss_pred             eEEEEEecCCCCC
Q 028303          113 SIMLVGNKCDLAH  125 (210)
Q Consensus       113 p~ivv~nK~D~~~  125 (210)
                      |+++|+||+|+..
T Consensus       220 pvilVlNK~Dl~~  232 (550)
T 2qpt_A          220 KIRVVLNKADMVE  232 (550)
T ss_dssp             GEEEEEECGGGSC
T ss_pred             CEEEEEECCCccC
Confidence            9999999999864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.58  E-value=1.3e-15  Score=122.16  Aligned_cols=104  Identities=13%  Similarity=0.066  Sum_probs=69.1

Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC--HH
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KE  132 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~  132 (210)
                      +.+.||||||...   .....+..+|++++|+|....+....+..   .+     ...|+++|+||+|+.+.....  .+
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---~~-----~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---GV-----LELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---TS-----GGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---hH-----hhcCCEEEEECCCCcChhHHHHHHH
Confidence            5688999999533   22344589999999999876544322221   01     135899999999985321111  11


Q ss_pred             HHHHHHHH-------cCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 028303          133 EGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       133 ~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~  169 (210)
                      +.......       ++.+++++||+++.|++++++.|.+.+..
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            12222111       15789999999999999999999888765

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.58  E-value=7.6e-15  Score=117.72  Aligned_cols=156  Identities=17%  Similarity=0.118  Sum_probs=94.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC-------------------EEEEEEEEecCCcch
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-------------------RPIKLQIWDTAGQES   67 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~   67 (210)
                      ++|+++|.+|+|||||+++|++........+..+.........+++                   ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999998642211111111111111222321                   235789999999765


Q ss_pred             hh-------hhhHHhhccccEEEEEEECCCh----------hhHHHHHHHHHH---------------------------
Q 028303           68 FR-------SITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLED---------------------------  103 (210)
Q Consensus        68 ~~-------~~~~~~~~~~d~~i~V~d~~~~----------~s~~~~~~~~~~---------------------------  103 (210)
                      ..       ......++.+|++++|+|+++.          +...++..+...                           
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            32       1233457899999999999852          112221110000                           


Q ss_pred             ------------HHh-------------------hc-CCCCeEEEEEecCCC--CCC-CCCCHHHHHHHHHHcCCeEEEE
Q 028303          104 ------------ARQ-------------------HA-NPNMSIMLVGNKCDL--AHR-RAVSKEEGEQFAKENGLLFLEA  148 (210)
Q Consensus       104 ------------~~~-------------------~~-~~~~p~ivv~nK~D~--~~~-~~~~~~~~~~~~~~~~~~~~~~  148 (210)
                                  +..                   .. ....|+++++||.|.  .+. .....+.++.++...+.+++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                        000                   00 113799999999984  221 1234567788888888999999


Q ss_pred             ecCCCCCHHHHHHH
Q 028303          149 SARTAQNVEEAFIK  162 (210)
Q Consensus       149 sa~~~~~i~~~~~~  162 (210)
                      ||+.+..+.++.+.
T Consensus       242 SAk~E~el~eL~~~  255 (368)
T 2dby_A          242 SARLEAELAELSGE  255 (368)
T ss_dssp             CHHHHHHHHTSCHH
T ss_pred             echhHHHHHHhchH
Confidence            99987666655443

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.4e-13  Score=110.42  Aligned_cols=152  Identities=14%  Similarity=0.087  Sum_probs=100.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-------hhhhHHhhcc
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------RSITRSYYRG   78 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~   78 (210)
                      ..+|+++|.|++|||||+|+|++........+..+.+.....+.+++.  ++.++||||....       .......++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            468999999999999999999998755555555677777777777774  5779999995321       1223456788


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEecCCCCC--------CCCCCHHHHHHHHHHcCCeEEEE
Q 028303           79 AAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAH--------RRAVSKEEGEQFAKENGLLFLEA  148 (210)
Q Consensus        79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~  148 (210)
                      +|++++|+|++++..  ........+....  -...|.++++||.|...        ....+.++.+.+...+.+..-++
T Consensus       150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv  227 (376)
T 4a9a_A          150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI  227 (376)
T ss_dssp             CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred             cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence            999999999998743  2222222222221  13568889999999632        23455667777666655443333


Q ss_pred             ecCCCCCHHHHHH
Q 028303          149 SARTAQNVEEAFI  161 (210)
Q Consensus       149 sa~~~~~i~~~~~  161 (210)
                      -...+...+++.+
T Consensus       228 ~~~~nv~eddl~d  240 (376)
T 4a9a_A          228 AFRCDATVDDLID  240 (376)
T ss_dssp             EECSCCCHHHHHH
T ss_pred             eecccCCHHHHHH
Confidence            3344555555544

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.53  E-value=3.2e-15  Score=128.13  Aligned_cols=115  Identities=15%  Similarity=0.159  Sum_probs=81.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC--C------CCC--CCC------CceeEEEEEEEEECCEEEEEEEEecCCcchhhh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR--F------QPV--HDL------TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS   70 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~--~------~~~--~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (210)
                      -||+|+|+.++|||||..+|+...  .      ...  ...      ..+++.......+..+.+.++|+||||+.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            478999999999999999986321  0      000  000      112333333333444556789999999999999


Q ss_pred             hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        71 ~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      .....++.+|++|+|+|+..+-......-| ..+...   ++|.++++||+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEecccccc
Confidence            999999999999999999987544443333 344443   689999999999753

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.52  E-value=4.1e-13  Score=116.52  Aligned_cols=117  Identities=15%  Similarity=0.111  Sum_probs=81.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhC--------CCCC----------CCCCCceeEEEEEEEEEC-----CEEEEEEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDK--------RFQP----------VHDLTIGVEFGARMVTID-----GRPIKLQIW   60 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~--------~~~~----------~~~~~~~~~~~~~~~~~~-----~~~~~~~i~   60 (210)
                      ++.=+|+|+|+.++|||||..+|+..        ....          +....+++......+.+.     ...+.++|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            34568999999999999999998621        1100          111111222223333332     235789999


Q ss_pred             ecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        61 D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      ||||+.+|.......++.+|++|+|+|+..+-......-|.... ..   ++|.++++||+|..
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~-~~---~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQAN-KY---GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-HH---TCCEEEEEECSSST
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHH-Hc---CCCeEEEEcccccc
Confidence            99999999999999999999999999999876544444444443 33   78999999999974

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.50  E-value=1.3e-13  Score=105.85  Aligned_cols=111  Identities=16%  Similarity=0.018  Sum_probs=67.6

Q ss_pred             EEEEEEecCCcchhhhhhH------HhhccccEEEEEEECCChhhHHHHHHHHH-HHHhhcCCCCeEEEEEecCCCCCCC
Q 028303           55 IKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~V~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                      +.+.+|||||.........      ..+.. +++++|+|+.............. ........+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            4688999999876543321      23455 89999998764322222211111 1111111268999999999986432


Q ss_pred             CCCHHHHHHH----------------------------HHHcC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          128 AVSKEEGEQF----------------------------AKENG--LLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       128 ~~~~~~~~~~----------------------------~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      .  .+++.++                            +...+  .+++++||+++.|+++++++|.+.+.
T Consensus       188 ~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          188 E--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             H--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             c--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            1  1111111                            22322  47899999999999999999877653

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.50  E-value=3.3e-13  Score=107.84  Aligned_cols=103  Identities=11%  Similarity=0.034  Sum_probs=62.1

Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG  134 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  134 (210)
                      +.+.++||+|....   .......+|++++|+|+..+.....+..   .+     ...|.++|+||+|+.+.... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence            46789999996422   2344678999999999987643222211   11     14588999999998531110 0011


Q ss_pred             HHHHH----------HcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 028303          135 EQFAK----------ENGLLFLEASARTAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       135 ~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~  169 (210)
                      ..+..          .+..+++.+|++++.|+++++++|.+.+..
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            12211          124578999999999999999999887643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.48  E-value=2.4e-14  Score=114.17  Aligned_cols=103  Identities=14%  Similarity=0.037  Sum_probs=64.9

Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC--HH
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KE  132 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~  132 (210)
                      +.+.||||||......   .....+|++++|+|+..+.....+..   ..     .+.|.++|+||+|+.+.....  .+
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            5688999999654433   24689999999999976543211111   11     135789999999986421111  01


Q ss_pred             HHHHHHHHc-------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          133 EGEQFAKEN-------GLLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       133 ~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      +........       ..+++++||+++.|++++++.|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            222222221       356899999999999999999988765

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.48  E-value=5.6e-14  Score=121.35  Aligned_cols=156  Identities=16%  Similarity=0.148  Sum_probs=95.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcee---EE--------------------------------------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV---EF--------------------------------------   43 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~--------------------------------------   43 (210)
                      ..++|+|+|.+++|||||+|+|++..+.+......+.   ..                                      
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            4579999999999999999999998764322211110   00                                      


Q ss_pred             ----------EEEEEEECCEEEEEEEEecCCcch-------------hhhhhHHhh-ccccEEEEEEECCChhhHHHHHH
Q 028303           44 ----------GARMVTIDGRPIKLQIWDTAGQES-------------FRSITRSYY-RGAAGALLVYDITRRETFNHLSS   99 (210)
Q Consensus        44 ----------~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~V~d~~~~~s~~~~~~   99 (210)
                                ....+..++ ...+.|+||||...             .......++ ..+|++++|+|++......+...
T Consensus       130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                      000011111 12477999999432             223344444 57899999999987533222222


Q ss_pred             HHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH----cC-CeEEEEecCCCCCHHHHHHHHHHH
Q 028303          100 WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----NG-LLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       100 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      +...+   ...+.|+++|+||+|+.+....... ... ...    .+ .+++.+||+++.|++++++.+.+.
T Consensus       209 ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEV---DPQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHH---CTTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHH---HhcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            22333   2347899999999999754433221 111 000    12 346789999999999998887763

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.38  E-value=8.7e-13  Score=103.43  Aligned_cols=97  Identities=19%  Similarity=0.142  Sum_probs=78.6

Q ss_pred             cchhhhhhHHhhccccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC-HHHHHHHHHHcC
Q 028303           65 QESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-KEEGEQFAKENG  142 (210)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~  142 (210)
                      ++.+..+...++.++|++++|+|++++. ++..+..|+..+..   .++|+++|+||+|+.+...+. .++...++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            5667777778999999999999999986 78888888876654   378999999999996533212 345566777778


Q ss_pred             CeEEEEecCCCCCHHHHHHHHH
Q 028303          143 LLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus       143 ~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      ++++++||+++.|++++++.+.
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHhhcc
Confidence            9999999999999999998653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.36  E-value=2.3e-11  Score=98.14  Aligned_cols=85  Identities=21%  Similarity=0.227  Sum_probs=61.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCceeEEEEEEEEECCE---------------EEEEEEEecCCcch--
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES--   67 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~--   67 (210)
                      ..+|+++|++|+|||||+|.|++... .....++.+.......+.+++.               ...+.+||+||...  
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~   99 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   99 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence            46899999999999999999999765 3344444455555555556541               13578999999432  


Q ss_pred             -----hhhhhHHhhccccEEEEEEECCC
Q 028303           68 -----FRSITRSYYRGAAGALLVYDITR   90 (210)
Q Consensus        68 -----~~~~~~~~~~~~d~~i~V~d~~~   90 (210)
                           ........++.+|++++|+|+.+
T Consensus       100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          100 STGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                 33345566789999999999863

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.35  E-value=1.8e-12  Score=103.08  Aligned_cols=104  Identities=8%  Similarity=0.027  Sum_probs=62.8

Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHH
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE  133 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  133 (210)
                      .+.+.|+||+|......   .....+|++++|+|+..++....+...   +.     ..|.++++||+|+..........
T Consensus       147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence            34688999999653322   335789999999998754322111111   11     23557788999974322111111


Q ss_pred             HHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          134 GEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       134 ~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      .+.+...          +..+++.+|++++.|++++++.|.+...
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2222221          1357889999999999999999888654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.33  E-value=1.1e-12  Score=105.75  Aligned_cols=88  Identities=18%  Similarity=0.132  Sum_probs=52.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEecCCcchhh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQESFR   69 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~   69 (210)
                      ..++|+++|.+|+|||||+++|++........++.+.+.....+.+++.               ...+.+||+||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            3478999999999999999999988764444444444444444555442               2358999999976544


Q ss_pred             h-------hhHHhhccccEEEEEEECCChh
Q 028303           70 S-------ITRSYYRGAAGALLVYDITRRE   92 (210)
Q Consensus        70 ~-------~~~~~~~~~d~~i~V~d~~~~~   92 (210)
                      .       .+..+++.+|++++|+|+.+..
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            3       4567789999999999997543

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.27  E-value=6.2e-12  Score=92.07  Aligned_cols=104  Identities=7%  Similarity=-0.022  Sum_probs=68.6

Q ss_pred             cCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHH---Hhhc--CCCCeEEEEEecC-CCCCCCCCCHHHHH
Q 028303           62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA---RQHA--NPNMSIMLVGNKC-DLAHRRAVSKEEGE  135 (210)
Q Consensus        62 ~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~---~~~~--~~~~p~ivv~nK~-D~~~~~~~~~~~~~  135 (210)
                      .+|++..+.+|..|+.++|++|||+|++|.+-.+ .+..+..+   ....  ..++|++|++||. |++.  ..+..++.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence            3478899999999999999999999999875433 33333222   2221  1578999999995 6743  45555554


Q ss_pred             HHHHH----cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303          136 QFAKE----NGLLFLEASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       136 ~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      +....    ....++.|||.+|+|+.+.++||.+.+.
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            43322    2345889999999999999999987654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.15  E-value=1.5e-10  Score=88.82  Aligned_cols=105  Identities=6%  Similarity=-0.053  Sum_probs=73.5

Q ss_pred             cCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHH----HHHHhhc-CCCCeEEEEEec-CCCCCCCCCCHHHHH
Q 028303           62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL----EDARQHA-NPNMSIMLVGNK-CDLAHRRAVSKEEGE  135 (210)
Q Consensus        62 ~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~----~~~~~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~  135 (210)
                      .+|++..+.+|..|+.++|++|||+|++|.+.++ .+..+    ..+.... ..++|++|++|| .|++.  ..+..++.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence            4688999999999999999999999999876433 22222    2222211 258999999996 58754  44555554


Q ss_pred             HHHHH----cCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 028303          136 QFAKE----NGLLFLEASARTAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       136 ~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~  169 (210)
                      +....    ....+..+||.+|+|+.+.++||.+.+.+
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            43322    23348899999999999999999887643

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.03  E-value=5.8e-10  Score=89.62  Aligned_cols=96  Identities=26%  Similarity=0.331  Sum_probs=72.2

Q ss_pred             CcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH----HH
Q 028303           64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF----AK  139 (210)
Q Consensus        64 G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~  139 (210)
                      ..+.|...+..+.+..|++++|+|+.++.     ..|...+..... +.|+++|+||+|+.... ...++..++    +.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            45788889999999999999999999864     344444444432 68999999999996533 233444433    55


Q ss_pred             HcCC---eEEEEecCCCCCHHHHHHHHHHH
Q 028303          140 ENGL---LFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       140 ~~~~---~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      ..+.   +++.+||+++.|++++++.|.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6676   79999999999999999988664

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.93  E-value=1.6e-09  Score=83.99  Aligned_cols=125  Identities=10%  Similarity=0.060  Sum_probs=81.1

Q ss_pred             EecCCcc-hhhhhhHHhhccccEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHH
Q 028303           60 WDTAGQE-SFRSITRSYYRGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ  136 (210)
Q Consensus        60 ~D~~G~~-~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  136 (210)
                      -..||+. .........+.++|++++|+|+.++.+..+  +..++        .+.|.++|+||+|+.+..  ..+...+
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~~   73 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWKE   73 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHHH
Confidence            3568875 555667778899999999999999876542  33332        368999999999996521  1122334


Q ss_pred             HHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhh---ccccccccCCcccccCCCCCC
Q 028303          137 FAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE---GALDAVNDSGIKVGYGRGQGP  194 (210)
Q Consensus       137 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  194 (210)
                      ++...+++++.+||+++.|+.++++.+.+.+......   ............+|.++.|+|
T Consensus        74 ~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKS  134 (282)
T 1puj_A           74 HFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKS  134 (282)
T ss_dssp             HHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHH
T ss_pred             HHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchH
Confidence            4545578899999999999999999888776654321   111111122566777776664

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.91  E-value=1.9e-09  Score=89.67  Aligned_cols=151  Identities=11%  Similarity=0.060  Sum_probs=82.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHH------hCCCCC----CCCCC-----------ceeEEEEEEEE-------------E
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFT------DKRFQP----VHDLT-----------IGVEFGARMVT-------------I   50 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~~----~~~~~-----------~~~~~~~~~~~-------------~   50 (210)
                      ....|+|+|.+|+||||++++|.      +.+..-    .+.+.           .+..+......             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998      332100    00000           00111110000             0


Q ss_pred             CCEEEEEEEEecCCcchhhh-hhH---Hh--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEecCCC
Q 028303           51 DGRPIKLQIWDTAGQESFRS-ITR---SY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDL  123 (210)
Q Consensus        51 ~~~~~~~~i~D~~G~~~~~~-~~~---~~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~  123 (210)
                      ....+.+.|+||||...... ++.   ..  ...+|.+++|+|+.........   ...+..    .+|+ ++|+||+|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~----~~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD----KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH----HHCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh----hcCceEEEEeCCcc
Confidence            00235688999999753221 111   11  2278999999999876432222   122222    1464 899999998


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeE------------------EEEecCCCCC-HHHHHHHHHHH
Q 028303          124 AHRRAVSKEEGEQFAKENGLLF------------------LEASARTAQN-VEEAFIKTAAK  166 (210)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~sa~~~~~-i~~~~~~l~~~  166 (210)
                      .....    .+.......+.|+                  +.+|+..+.+ +.++++++.+.
T Consensus       253 ~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            64221    1222333444443                  2357778888 88888877654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.90  E-value=3.3e-08  Score=80.42  Aligned_cols=139  Identities=17%  Similarity=0.240  Sum_probs=68.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CceeEEEEEEEEEC--CEEEEEEEEecCCcchh--------------
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVTID--GRPIKLQIWDTAGQESF--------------   68 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~--------------   68 (210)
                      ++++|+|++|+|||||++.|.+..+......  ..+.......+...  +....+.++|++|....              
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            5799999999999999999998754321111  11111111222222  22236889999885321              


Q ss_pred             hhhh----HHh---------hcc--cc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC--
Q 028303           69 RSIT----RSY---------YRG--AA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--  130 (210)
Q Consensus        69 ~~~~----~~~---------~~~--~d-~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--  130 (210)
                      ...+    ..+         ...  +| +++|+.|...+-+..++    ..+... ..+.|+|+|.||+|........  
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di----eilk~L-~~~~~vI~Vi~KtD~Lt~~E~~~l  197 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL----VTMKKL-DSKVNIIPIIAKADAISKSELTKF  197 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH----HHHHHT-CSCSEEEEEESCGGGSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH----HHHHHH-hhCCCEEEEEcchhccchHHHHHH
Confidence            0111    111         011  23 36667777654332222    222222 2478999999999975322110  


Q ss_pred             HHHHHHHHHHcCCeEEEEec
Q 028303          131 KEEGEQFAKENGLLFLEASA  150 (210)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~sa  150 (210)
                      ...+...+...+++++.+|.
T Consensus       198 ~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          198 KIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHcCCcEEecCC
Confidence            01122222234666666664

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.90  E-value=1.6e-09  Score=87.14  Aligned_cols=98  Identities=23%  Similarity=0.219  Sum_probs=70.5

Q ss_pred             CCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH----H
Q 028303           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF----A  138 (210)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~  138 (210)
                      ..++.|...+..+.+.++++++|+|+.++.+     .|...+.... .+.|+++|+||+|+.... ...+...++    +
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMA  128 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHH
Confidence            3478899999999899999999999999763     2333333332 268999999999996532 233444433    4


Q ss_pred             HHcCC---eEEEEecCCCCCHHHHHHHHHHHH
Q 028303          139 KENGL---LFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       139 ~~~~~---~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      ...+.   .++.+||+++.|++++++.|.+..
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            55566   689999999999999999886653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.87  E-value=1.5e-10  Score=93.17  Aligned_cols=136  Identities=17%  Similarity=0.171  Sum_probs=76.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC-----CCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh--------hh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK-----RFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------IT   72 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~   72 (210)
                      .+|+++|.+|+|||||+|+|++.     .... ...+  +.+.....+.++..   +.++||||......        ..
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999986     2211 1111  22223333444432   67999999532221        11


Q ss_pred             HHhh--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHH-HHHHcCCeEEEEe
Q 028303           73 RSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ-FAKENGLLFLEAS  149 (210)
Q Consensus        73 ~~~~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~~~~~~~~s  149 (210)
                      ..++  +..|.++++++....-.+..+..    +......+.|+++++||.|..+....  +.+.+ +.+..+..+.+.+
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~--~~~~~~~~~~~g~~l~p~~  311 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL--EKADSLYANQLGELLSPPS  311 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG--GGHHHHHHHHBTTTBCSSC
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH--HHHHHHHHHhcCCccCCCC
Confidence            2222  67889999999843210001100    11122346899999999998654332  22333 3344555555555


Q ss_pred             cCCC
Q 028303          150 ARTA  153 (210)
Q Consensus       150 a~~~  153 (210)
                      +...
T Consensus       312 ~~~~  315 (369)
T 3ec1_A          312 KRYA  315 (369)
T ss_dssp             GGGT
T ss_pred             chhh
Confidence            4443

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.82  E-value=1.4e-08  Score=78.14  Aligned_cols=137  Identities=20%  Similarity=0.217  Sum_probs=69.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-------CCceeEEEEEEEEEC--CEEEEEEEEecCCcchh-------h
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-------LTIGVEFGARMVTID--GRPIKLQIWDTAGQESF-------R   69 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~-------~   69 (210)
                      .++++|+|++|+|||||++.|.+........       ...........+...  +-...++++|++|....       .
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            5899999999999999999998754322110       000000001111111  12236789999883210       0


Q ss_pred             hh-------h----H----------HhhccccEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303           70 SI-------T----R----------SYYRGAAGALLVYDIT-RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        70 ~~-------~----~----------~~~~~~d~~i~V~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                      .+       .    .          ..+..+++.++++|.. .+-...+ ...+..+   ... .++|+|++|.|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L---~~~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL---SKV-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH---HTT-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH---Hhc-CcEEEEEeccccCCHH
Confidence            00       0    0          0112357888888854 3222112 1222222   223 8999999999975422


Q ss_pred             CC--CHHHHHHHHHHcCCeEEE
Q 028303          128 AV--SKEEGEQFAKENGLLFLE  147 (210)
Q Consensus       128 ~~--~~~~~~~~~~~~~~~~~~  147 (210)
                      ..  ..+.+.+.+...++.+|+
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            11  112233445556776654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.77  E-value=1.1e-07  Score=77.32  Aligned_cols=154  Identities=16%  Similarity=0.129  Sum_probs=80.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc-eeE--EEEEEEEECCEEEEEEEEecCCcchhhhhhH-----Hhhcc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-GVE--FGARMVTIDGRPIKLQIWDTAGQESFRSITR-----SYYRG   78 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-----~~~~~   78 (210)
                      ..++|+|++|||||||+|.+.+........... +..  ......... ....+.+||++|.........     ..+..
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            478999999999999999999854322211111 110  001111111 111467999998532211111     12334


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC-------CCCCCCHHHH----HHHH----HHcC-
Q 028303           79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA-------HRRAVSKEEG----EQFA----KENG-  142 (210)
Q Consensus        79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~----~~~~----~~~~-  142 (210)
                      .+..++ ++...+. -..+. ....+..   .+.|+++|.||.|+.       .-.....++.    +++.    .+.+ 
T Consensus       149 ~~~~~~-lS~G~~~-kqrv~-la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~  222 (413)
T 1tq4_A          149 YDFFII-ISATRFK-KNDID-IAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  222 (413)
T ss_dssp             CSEEEE-EESSCCC-HHHHH-HHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCeEE-eCCCCcc-HHHHH-HHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            455554 7765211 11111 1112222   268999999999963       1122233333    3332    1222 


Q ss_pred             --CeEEEEec--CCCCCHHHHHHHHHHHH
Q 028303          143 --LLFLEASA--RTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       143 --~~~~~~sa--~~~~~i~~~~~~l~~~~  167 (210)
                        ..++.+|+  ..+.+++++.+.+.+.+
T Consensus       223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          223 AEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             CCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence              35788999  45567888888776654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.75  E-value=1.3e-09  Score=87.68  Aligned_cols=133  Identities=14%  Similarity=0.148  Sum_probs=73.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCC-----CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh----h----hH
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----I----TR   73 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~----~~   73 (210)
                      .+|+++|.+|+|||||+|+|++.....     ......+.+.....+.+...   +.++||||......    +    ..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            579999999999999999999863211     11122233334444444432   67999999543221    1    11


Q ss_pred             Hh--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCeEEEE
Q 028303           74 SY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEA  148 (210)
Q Consensus        74 ~~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~  148 (210)
                      .+  .+..+.++++++.........+..    +......+.|+++++||.|..+...  .+.+.+++. ..+..+.+.
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~--~~~~~~~~~~~~g~~l~p~  309 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK--LEKADELYKNHAGDLLSPP  309 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE--HHHHHHHHHHHBTTTBCSS
T ss_pred             HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc--HHHHHHHHHHHhCCccCCC
Confidence            11  356788999998743210001100    1112234689999999999865332  344444444 345443333

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.54  E-value=8e-08  Score=74.39  Aligned_cols=58  Identities=28%  Similarity=0.405  Sum_probs=35.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (210)
                      ..++|+++|.+|+|||||+|+|.+......... .+.+.....+.++.   .+.+|||||..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            458999999999999999999998764332221 12222222233332   46799999954

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.52  E-value=2e-07  Score=76.23  Aligned_cols=86  Identities=15%  Similarity=0.048  Sum_probs=52.0

Q ss_pred             EEEEEEecCCcchhhh-----hhH-HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           55 IKLQIWDTAGQESFRS-----ITR-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~-----~~~-~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                      +.+.|+||+|......     +.. .....+|.+++|+|+.......+..   ..+...   -.+..+|+||.|...   
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~---~~i~gVIlTKlD~~~---  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA---TPIGSIIVTKLDGSA---  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS---CTTEEEEEECCSSCS---
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh---CCCeEEEEECCCCcc---
Confidence            5688999999543221     111 1233579999999998754432222   222222   235578999999743   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEec
Q 028303          129 VSKEEGEQFAKENGLLFLEASA  150 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~sa  150 (210)
                       ..-.+.......+.|+.+++.
T Consensus       254 -~gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          254 -KGGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             -SHHHHHHHHHTTCCCEEEEEC
T ss_pred             -cccHHHHHHHHHCCCEEEEEc
Confidence             223345556667888877775

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.45  E-value=6.1e-08  Score=74.28  Aligned_cols=57  Identities=25%  Similarity=0.412  Sum_probs=35.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES   67 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   67 (210)
                      ++++++|.+|+|||||+|+|.+...... ..+.+.+.....+.++.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            5899999999999999999998765332 12223332222233322   467999999654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.44  E-value=3.1e-08  Score=75.90  Aligned_cols=94  Identities=12%  Similarity=0.091  Sum_probs=62.5

Q ss_pred             cCCcc-hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028303           62 TAGQE-SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE  140 (210)
Q Consensus        62 ~~G~~-~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  140 (210)
                      .||+. .........+.++|+++.|+|+.++.+..+..  +. +   .  +.|.++|+||+|+.+..  ..+...+++..
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~~--~~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADEK--TTKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence            36654 33345677789999999999999886643311  11 1   1  68999999999996521  11233445555


Q ss_pred             cCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303          141 NGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       141 ~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      .+.++ .+|++++.|++++++.+...
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence            67888 99999999999988876543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.32  E-value=2.2e-07  Score=75.83  Aligned_cols=87  Identities=15%  Similarity=0.057  Sum_probs=52.7

Q ss_pred             EEEEEEEecCCcch--hhh----hhHH--hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           54 PIKLQIWDTAGQES--FRS----ITRS--YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        54 ~~~~~i~D~~G~~~--~~~----~~~~--~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      .+.+.++||||...  ...    ....  .....|.+++|+|+.......+..   ..+...   -.+..+|+||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a---~~f~~~---~~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA---SRFHQA---SPIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH---HHHHHH---CSSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH---HHHhcc---cCCcEEEEecccccc
Confidence            35677999999543  111    1111  112468999999998764433322   222222   235789999999742


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEEec
Q 028303          126 RRAVSKEEGEQFAKENGLLFLEASA  150 (210)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~sa  150 (210)
                          ..-.+.......+.|+.+++.
T Consensus       253 ----~~G~als~~~~~g~Pi~fig~  273 (433)
T 3kl4_A          253 ----KGGGALSAVVATGATIKFIGT  273 (433)
T ss_dssp             ----CHHHHHHHHHHHTCEEEEEEC
T ss_pred             ----cchHHHHHHHHHCCCEEEEEC
Confidence                233455566667899887775

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.30  E-value=2.9e-06  Score=69.47  Aligned_cols=84  Identities=14%  Similarity=0.024  Sum_probs=48.8

Q ss_pred             EEEEEEEecCCcchhhhhh----HHh--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-e-EEEEEecCCCCC
Q 028303           54 PIKLQIWDTAGQESFRSIT----RSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-S-IMLVGNKCDLAH  125 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~~  125 (210)
                      .+.+.|+||||........    ...  +..+|.+++|+|+..+..   .......+.    ... | ..+|+||+|...
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence            3567899999965432211    111  226899999999876542   212222221    134 5 789999999743


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEE
Q 028303          126 RRAVSKEEGEQFAKENGLLFLEA  148 (210)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~  148 (210)
                      .    ...+..+....+.++..+
T Consensus       253 ~----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 K----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             T----THHHHHHHHHSSCCEEEE
T ss_pred             c----hHHHHHHHHHHCCCEEEe
Confidence            1    123444566667776655

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.27  E-value=1e-06  Score=74.63  Aligned_cols=63  Identities=21%  Similarity=0.114  Sum_probs=39.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CceeEEEEEEEE--E-CCEEEEEEEEecCCcc
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVT--I-DGRPIKLQIWDTAGQE   66 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~~~~i~D~~G~~   66 (210)
                      .+.+.|+|+|.+|+|||||+|+|++....-.... +.+.+.....+.  + ......+.++||||..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            3568899999999999999999998764211111 112222222221  1 1223467899999954

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.19  E-value=4.9e-06  Score=64.81  Aligned_cols=92  Identities=15%  Similarity=0.085  Sum_probs=55.9

Q ss_pred             EEEEEEEecCCcch--hhh-hhH-----HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCC
Q 028303           54 PIKLQIWDTAGQES--FRS-ITR-----SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLA  124 (210)
Q Consensus        54 ~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~  124 (210)
                      .+.+.++||||...  ... +..     .....+|.+++|+|+.....   .......+..    ..| ..+|+||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence            34688999999765  322 211     13447899999999875422   2222222222    245 67889999964


Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303          125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (210)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  158 (210)
                      .    ....+..+....+.|+..++  .|+++++
T Consensus       253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          253 A----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            2    23345566777788887776  4555543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.12  E-value=7.4e-07  Score=69.61  Aligned_cols=88  Identities=13%  Similarity=0.120  Sum_probs=60.1

Q ss_pred             hhHHhhccccEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHcCCeEEE
Q 028303           71 ITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENGLLFLE  147 (210)
Q Consensus        71 ~~~~~~~~~d~~i~V~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~  147 (210)
                      +....+.++|.+++|+|+.+|... ..+..++....   ..++|.++|+||+|+.+...  ...++..+.+...+.+++.
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~  155 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL  155 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence            444568899999999999977543 33333333222   23789999999999975422  0123445566666889999


Q ss_pred             EecCCCCCHHHHHH
Q 028303          148 ASARTAQNVEEAFI  161 (210)
Q Consensus       148 ~sa~~~~~i~~~~~  161 (210)
                      +|+.++.|++++++
T Consensus       156 ~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          156 TSSKDQDSLADIIP  169 (307)
T ss_dssp             CCHHHHTTCTTTGG
T ss_pred             EecCCCCCHHHHHh
Confidence            99998888776654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.11  E-value=7.2e-06  Score=70.01  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      ..|+|+|++|||||||++.+.+...
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~~   70 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVAL   70 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC-
T ss_pred             CeEEEECCCCChHHHHHHHHhCCCC
Confidence            3599999999999999999998743

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.00  E-value=2e-05  Score=62.17  Aligned_cols=91  Identities=11%  Similarity=0.016  Sum_probs=51.7

Q ss_pred             EEEEEecCCcchhhhhhH----H--hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303           56 KLQIWDTAGQESFRSITR----S--YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (210)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~----~--~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  129 (210)
                      .+.++|++|.........    .  ..-..|-.++++|+.....   +......+....  + ..++++||.|...    
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~---~~~~~~~~~~~~--~-it~iilTKlD~~a----  282 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA---IVEQARQFNEAV--K-IDGIILTKLDADA----  282 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHS--C-CCEEEEECGGGCS----
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH---HHHHHHHHHHhc--C-CCEEEEeCcCCcc----
Confidence            356799999643222111    1  1124688999999776532   223333333222  2 3478889999632    


Q ss_pred             CHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303          130 SKEEGEQFAKENGLLFLEASARTAQNVEE  158 (210)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  158 (210)
                      ..-.+.......+.|+..++  +|+++++
T Consensus       283 ~~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          283 RGGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            12345566677788888776  5555543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.95  E-value=3e-05  Score=61.74  Aligned_cols=83  Identities=18%  Similarity=0.171  Sum_probs=54.6

Q ss_pred             hccccEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHHHcCCeEEEEecCCC
Q 028303           76 YRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKENGLLFLEASARTA  153 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~~  153 (210)
                      +.++|.+++|.+. +|.. ...+..++......   ++|.++|+||+|+.+.... ..++....+...+++++.+|+.++
T Consensus       128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~  203 (358)
T 2rcn_A          128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ  203 (358)
T ss_dssp             EECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred             HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            5788999988665 4543 33344444333333   6888999999999653210 012233445567889999999999


Q ss_pred             CCHHHHHHH
Q 028303          154 QNVEEAFIK  162 (210)
Q Consensus       154 ~~i~~~~~~  162 (210)
                      .+++++...
T Consensus       204 ~gl~~L~~~  212 (358)
T 2rcn_A          204 DGLKPLEEA  212 (358)
T ss_dssp             BTHHHHHHH
T ss_pred             cCHHHHHHh
Confidence            999887654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.87  E-value=1e-06  Score=73.07  Aligned_cols=109  Identities=15%  Similarity=0.132  Sum_probs=60.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch--hhhhh--------HH
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--FRSIT--------RS   74 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~~   74 (210)
                      ..+.|+++|.+||||||+.++|....... ...+.............+......+||..|.+.  ....+        ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34789999999999999999997542211 111111000000000011112335789888732  22222        44


Q ss_pred             hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 028303           75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG  118 (210)
Q Consensus        75 ~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~  118 (210)
                      ++...++.++|+|.++. +......|+..+...   +.+++++-
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~  156 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE  156 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence            55567888999999987 445555666555543   34555544

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.57  E-value=0.00011  Score=60.31  Aligned_cols=25  Identities=20%  Similarity=0.121  Sum_probs=22.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +..-|.|+|++++|||+|+|+|++.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            5677899999999999999999863

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.52  E-value=5.6e-05  Score=54.30  Aligned_cols=24  Identities=38%  Similarity=0.710  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .+++++|++|||||||++.+.+..
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999988653

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.43  E-value=0.00037  Score=56.98  Aligned_cols=84  Identities=14%  Similarity=0.046  Sum_probs=46.4

Q ss_pred             EEEEEEEecCCcchhhh-hhH-----HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCC
Q 028303           54 PIKLQIWDTAGQESFRS-ITR-----SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHR  126 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~  126 (210)
                      .+.+.|+||||...... +..     .....+|.+++|+|+.......   .....+..    ..+ .-+|+||.|....
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~----~l~i~gvVlnK~D~~~~  255 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE----ALPLTGVVLTKVDGDAR  255 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc----cCCCeEEEEecCCCCcc
Confidence            35688999999654322 111     1234688999999997653321   22222222    234 3478999997432


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEE
Q 028303          127 RAVSKEEGEQFAKENGLLFLEA  148 (210)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~  148 (210)
                      .    ..+..+....+.|+..+
T Consensus       256 ~----g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          256 G----GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             C----THHHHHHHHHCCCEEEE
T ss_pred             H----HHHHHHHHHHCCCeEEE
Confidence            2    23334555556664444

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.40  E-value=0.0001  Score=54.04  Aligned_cols=29  Identities=31%  Similarity=0.293  Sum_probs=22.2

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |.......|+|+|++|||||||++.|.+.
T Consensus         1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            1 MSAPKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             ----CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            55555678999999999999999998764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.37  E-value=0.0001  Score=52.80  Aligned_cols=22  Identities=23%  Similarity=0.529  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5799999999999999999864

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.36  E-value=0.00012  Score=53.44  Aligned_cols=30  Identities=20%  Similarity=0.336  Sum_probs=23.5

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      |.......|+|+|++||||||+++.|.+..
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            555555679999999999999999998764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.35  E-value=4.7e-05  Score=59.43  Aligned_cols=23  Identities=35%  Similarity=0.554  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|+|||||+|.|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            68999999999999999998754

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.34  E-value=0.00011  Score=53.50  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|++|||||||++.|.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999863

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.31  E-value=0.00016  Score=52.05  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=21.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .--.|+|+|++|||||||++.|.+.
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3356899999999999999999875

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.30  E-value=0.00018  Score=57.30  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      .++|+|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            579999999999999999997654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.27  E-value=0.00015  Score=52.73  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -++|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4799999999999999999875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.26  E-value=0.00049  Score=53.56  Aligned_cols=22  Identities=41%  Similarity=0.650  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|+|||||+|.|. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            47899999999999999999 54

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.24  E-value=0.00017  Score=52.88  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++|+|++|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.24  E-value=0.00018  Score=52.38  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=21.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..-.|+|+|++|||||||++.|.+.
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3356899999999999999999754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.20  E-value=0.0002  Score=53.19  Aligned_cols=23  Identities=30%  Similarity=0.564  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++|+|++|||||||++.|.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999998754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.18  E-value=0.00021  Score=52.89  Aligned_cols=23  Identities=30%  Similarity=0.574  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|||||||++.|.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47999999999999999998753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.17  E-value=0.00023  Score=49.98  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|+.|||||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            57999999999999999998765

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.17  E-value=0.00018  Score=51.14  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q 028303            8 KYIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~   27 (210)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.17  E-value=0.00098  Score=54.31  Aligned_cols=85  Identities=21%  Similarity=0.106  Sum_probs=47.7

Q ss_pred             EEEEEEecCCcchhhh-hhH-----HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           55 IKLQIWDTAGQESFRS-ITR-----SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                      +.+.|+||||...... +..     ...-.+|.+++|+|+.....   .......+....  + ..-+|+||.|....  
T Consensus       181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~~l--~-i~GVIlTKlD~~~~--  252 (425)
T 2ffh_A          181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEKV--G-VTGLVLTKLDGDAR--  252 (425)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHT--C-CCEEEEESGGGCSS--
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHhcC--C-ceEEEEeCcCCccc--
Confidence            4678999999643321 111     11235889999999875422   222222222211  1 24678999996422  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEe
Q 028303          129 VSKEEGEQFAKENGLLFLEAS  149 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s  149 (210)
                        .-.+.......+.|+..+.
T Consensus       253 --~g~alsi~~~~g~PI~flg  271 (425)
T 2ffh_A          253 --GGAALSARHVTGKPIYFAG  271 (425)
T ss_dssp             --CHHHHHHHHHHCCCEEEEE
T ss_pred             --HHHHHHHHHHHCCCEEEEe
Confidence              2234555666788866665

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.13  E-value=0.00031  Score=51.16  Aligned_cols=23  Identities=26%  Similarity=0.507  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      --|+|+|++|+|||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            35789999999999999999864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.12  E-value=0.00025  Score=53.24  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.10  E-value=0.00025  Score=51.96  Aligned_cols=25  Identities=24%  Similarity=0.166  Sum_probs=21.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ....|+|+|++|||||||++.|.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467899999999999999998764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.10  E-value=0.0003  Score=51.61  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      --|+|+|++|||||||++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358899999999999999998763

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.06  E-value=0.00029  Score=52.40  Aligned_cols=23  Identities=39%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+..
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998763

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.05  E-value=0.00052  Score=48.64  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...|+|+|++||||||+.+.|.+.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh
Confidence            457899999999999999998753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.04  E-value=0.00035  Score=52.55  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.03  E-value=0.00038  Score=49.17  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999864

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.03  E-value=0.00038  Score=50.08  Aligned_cols=21  Identities=43%  Similarity=0.635  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .++|+|++|||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999985

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.03  E-value=0.00039  Score=50.19  Aligned_cols=21  Identities=38%  Similarity=0.607  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+|+||+|+|||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.00  E-value=0.00038  Score=51.45  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+..
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998763

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.00  E-value=0.00037  Score=53.52  Aligned_cols=23  Identities=39%  Similarity=0.573  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999998764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.00  E-value=0.00037  Score=53.12  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|||||||++.+.+..
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.97  E-value=0.00054  Score=49.15  Aligned_cols=28  Identities=18%  Similarity=0.283  Sum_probs=23.0

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .......|+|+|++||||||+.+.|...
T Consensus         6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            6 EQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3334568999999999999999998764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.97  E-value=0.00045  Score=50.42  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .-|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.97  E-value=0.00043  Score=50.13  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4799999999999999998764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.96  E-value=0.00041  Score=52.75  Aligned_cols=23  Identities=39%  Similarity=0.452  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+..
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.96  E-value=0.00045  Score=51.83  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|++|||||||++.+.+.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.95  E-value=0.00052  Score=50.73  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ..|+|+|++||||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.95  E-value=0.00041  Score=53.00  Aligned_cols=23  Identities=43%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|||||||++.+.+..
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999999764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.94  E-value=0.00049  Score=48.41  Aligned_cols=20  Identities=30%  Similarity=0.300  Sum_probs=18.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHH
Q 028303            7 FKYIIIGDTGVGKSCLLLQF   26 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l   26 (210)
                      +.|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.94  E-value=0.00045  Score=52.72  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|||||||++.+.+..
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999998763

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.94  E-value=0.00073  Score=48.42  Aligned_cols=28  Identities=18%  Similarity=0.224  Sum_probs=23.3

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      |+......|+|.|++||||||+.+.|..
T Consensus         1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence            5555456899999999999999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.94  E-value=0.0005  Score=51.79  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+..
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998763

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.94  E-value=0.00051  Score=51.29  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998763

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.93  E-value=0.00046  Score=51.91  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+..
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998763

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.93  E-value=0.00051  Score=51.91  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|||||||++.+.+..
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998763

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.92  E-value=0.00047  Score=52.37  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|||||||++.+.+..
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.92  E-value=0.00051  Score=51.98  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|++|||||||++.+.+.
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999975

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.92  E-value=0.00048  Score=52.10  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+..
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.91  E-value=0.00057  Score=51.39  Aligned_cols=21  Identities=24%  Similarity=0.564  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHH
Q 028303            7 FKYIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~   27 (210)
                      ..|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999998

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.90  E-value=0.00055  Score=52.34  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|++|||||||++.+.+.
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999975

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.90  E-value=0.00062  Score=47.89  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .|+|+|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.89  E-value=0.00056  Score=52.10  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|++|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999998764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.88  E-value=0.00074  Score=47.88  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.88  E-value=0.00038  Score=51.18  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++++|++|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999876

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.88  E-value=0.00058  Score=52.55  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|||||||++.+.+..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.87  E-value=0.00059  Score=51.96  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|||||||++.+.+..
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            47999999999999999999753

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.87  E-value=0.0005  Score=49.99  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .-.|+|+|++||||||+.+.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.87  E-value=0.00059  Score=50.08  Aligned_cols=22  Identities=23%  Similarity=0.447  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999854

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.85  E-value=0.00065  Score=52.90  Aligned_cols=22  Identities=27%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            6899999999999999999865

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.85  E-value=0.00068  Score=49.58  Aligned_cols=25  Identities=16%  Similarity=0.085  Sum_probs=21.7

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .....|+|.|.+||||||+.+.|..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999875

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.85  E-value=0.00057  Score=52.36  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|||||||++.+.+..
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.84  E-value=0.00059  Score=51.75  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.84  E-value=0.00064  Score=49.96  Aligned_cols=22  Identities=18%  Similarity=0.400  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999964

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.84  E-value=0.00068  Score=49.29  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999987

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.83  E-value=0.00061  Score=52.05  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+..
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998763

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.81  E-value=0.00066  Score=48.39  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.81  E-value=0.00079  Score=48.90  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.80  E-value=0.00089  Score=48.77  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      +.|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999986

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.80  E-value=0.00074  Score=49.08  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..|+|+|++||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998754

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.78  E-value=0.00082  Score=49.32  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      +.|+|+|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.78  E-value=0.00079  Score=51.34  Aligned_cols=23  Identities=39%  Similarity=0.575  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.77  E-value=0.00084  Score=47.61  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..|+|.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.77  E-value=0.00076  Score=49.81  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++|+|++|||||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998743

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.77  E-value=0.00086  Score=48.54  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999975

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.76  E-value=0.00078  Score=52.68  Aligned_cols=25  Identities=24%  Similarity=0.195  Sum_probs=21.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...-|+|+|++|||||||++.|.+.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhh
Confidence            3467899999999999999998864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.76  E-value=0.00099  Score=50.08  Aligned_cols=25  Identities=24%  Similarity=0.230  Sum_probs=21.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ....|+|+|++|||||||++.|.+.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998763

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.74  E-value=0.00049  Score=51.20  Aligned_cols=22  Identities=14%  Similarity=0.341  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHH-hC
Q 028303            8 KYIIIGDTGVGKSCLLLQFT-DK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~-~~   29 (210)
                      -++|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998 64

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.73  E-value=0.0012  Score=47.10  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ...|+|+|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.73  E-value=0.00099  Score=51.80  Aligned_cols=24  Identities=33%  Similarity=0.311  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      .++++|++|||||||++.|.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            478999999999999999997654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.73  E-value=0.0011  Score=47.50  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ..|+|.|++||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.71  E-value=0.00099  Score=47.52  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .-++++|++|+|||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            45899999999999999999864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.70  E-value=0.00088  Score=53.35  Aligned_cols=23  Identities=35%  Similarity=0.512  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999999764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.70  E-value=0.0013  Score=47.70  Aligned_cols=24  Identities=13%  Similarity=0.097  Sum_probs=21.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...|+|.|++||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999999865

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.69  E-value=0.00099  Score=48.92  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.68  E-value=0.0014  Score=47.74  Aligned_cols=24  Identities=25%  Similarity=0.120  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...|+|.|++||||||+.+.|...
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            367999999999999999999753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.67  E-value=0.00098  Score=51.57  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+..
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998763

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.66  E-value=0.0016  Score=47.42  Aligned_cols=25  Identities=28%  Similarity=0.260  Sum_probs=22.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ....|+|+|++||||||+.+.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4467999999999999999999864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.64  E-value=0.0011  Score=52.82  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999999764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.64  E-value=0.0009  Score=53.44  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=22.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .-+++|+|++|||||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4588999999999999999998763

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.64  E-value=0.0041  Score=42.58  Aligned_cols=23  Identities=13%  Similarity=0.200  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..|++.|++|+|||++++.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            45899999999999999887643

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.64  E-value=0.0015  Score=49.16  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ..+.|+|+|++||||||+.++|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999964

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.64  E-value=0.0014  Score=46.92  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.64  E-value=0.0011  Score=52.87  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++|+|++|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            36899999999999999998764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.64  E-value=0.0012  Score=47.16  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.62  E-value=0.0011  Score=52.80  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            36899999999999999998764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.62  E-value=0.0013  Score=46.87  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.62  E-value=0.00069  Score=52.82  Aligned_cols=22  Identities=27%  Similarity=0.455  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|++|||||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5899999999999999999865

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.62  E-value=0.0011  Score=53.08  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            36899999999999999999764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.61  E-value=0.0012  Score=52.74  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999998764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.61  E-value=0.00058  Score=48.62  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|++|||||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.60  E-value=0.0019  Score=46.88  Aligned_cols=24  Identities=17%  Similarity=0.322  Sum_probs=21.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ....|+|.|++||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.60  E-value=0.0012  Score=50.61  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++++|++|+|||+|++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.59  E-value=0.0014  Score=45.92  Aligned_cols=21  Identities=24%  Similarity=0.240  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.57  E-value=0.0014  Score=48.23  Aligned_cols=23  Identities=22%  Similarity=0.494  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .+.|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.57  E-value=0.0012  Score=52.53  Aligned_cols=22  Identities=36%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .|+|+|++|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.57  E-value=0.0014  Score=46.58  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ..|+++|++||||||+.+.|..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.56  E-value=0.0013  Score=52.73  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            36899999999999999999764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.56  E-value=0.0013  Score=52.65  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            36899999999999999998764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.56  E-value=0.002  Score=46.83  Aligned_cols=24  Identities=25%  Similarity=0.135  Sum_probs=21.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ....|+|+|++|||||||++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999875

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.55  E-value=0.0014  Score=46.48  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +|+|+|++||||||+.+.|...
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999998643

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.54  E-value=0.0016  Score=49.16  Aligned_cols=26  Identities=23%  Similarity=0.199  Sum_probs=21.6

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ....+.|+|.|++||||||+.+.|..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.53  E-value=0.0018  Score=46.35  Aligned_cols=23  Identities=17%  Similarity=0.406  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.52  E-value=0.0021  Score=50.44  Aligned_cols=25  Identities=24%  Similarity=0.171  Sum_probs=21.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..+-|+|+|++|||||||++.|.+.
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999988654

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.51  E-value=0.0017  Score=47.14  Aligned_cols=23  Identities=17%  Similarity=0.550  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .+.|+|+|++||||||+.+.|..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.50  E-value=0.0015  Score=50.86  Aligned_cols=84  Identities=13%  Similarity=0.014  Sum_probs=46.0

Q ss_pred             EEEEEecCCcchhhh------------hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCC
Q 028303           56 KLQIWDTAGQESFRS------------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL  123 (210)
Q Consensus        56 ~~~i~D~~G~~~~~~------------~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  123 (210)
                      .+.+.|++|......            +.......++.+++++|+.......+   ....+....  + ..++++||.|.
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~---~~~~~~~~~--~-~t~iivTh~d~  259 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLE---QAKKFHEAV--G-LTGVIVTKLDG  259 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHH---HHHHHHHHH--C-CSEEEEECTTS
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHH---HHHHHHHHc--C-CcEEEEECCcc
Confidence            356889999532211            11122345778889999876543222   222222221  2 34688899986


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEEe
Q 028303          124 AHRRAVSKEEGEQFAKENGLLFLEAS  149 (210)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~s  149 (210)
                      ....    -.+.......+.|+.++.
T Consensus       260 ~a~g----g~~l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          260 TAKG----GVLIPIVRTLKVPIKFVG  281 (304)
T ss_dssp             SCCC----TTHHHHHHHHCCCEEEEE
T ss_pred             cccc----cHHHHHHHHHCCCeEEEe
Confidence            4321    223445556678876665

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.49  E-value=0.0017  Score=48.07  Aligned_cols=21  Identities=29%  Similarity=0.381  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.49  E-value=0.0016  Score=50.74  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      --++++|++||||||+++.+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.49  E-value=0.0015  Score=50.91  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...|+|+|++|||||||++.|.+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.48  E-value=0.0016  Score=48.18  Aligned_cols=23  Identities=30%  Similarity=0.586  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ...|+|+|++||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.48  E-value=0.002  Score=49.78  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ....|+|.|++||||||+.+.|...
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999753

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.48  E-value=0.0022  Score=47.13  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .+.|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999975

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.48  E-value=0.001  Score=46.19  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|+|||+|++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998643

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.47  E-value=0.0017  Score=48.93  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|+|||+|++.+.+..
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999998653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.46  E-value=0.002  Score=48.67  Aligned_cols=21  Identities=24%  Similarity=0.305  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHH
Q 028303            7 FKYIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~   27 (210)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999997

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.44  E-value=0.0011  Score=52.72  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            46899999999999999998764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.43  E-value=0.0018  Score=48.95  Aligned_cols=21  Identities=29%  Similarity=0.396  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            579999999999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.43  E-value=0.0017  Score=52.37  Aligned_cols=22  Identities=41%  Similarity=0.570  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.42  E-value=0.0016  Score=51.91  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|++|||||||++.+.+.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999965

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.42  E-value=0.0019  Score=51.81  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      =.++|+|++|||||||++.+.+.
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999999763

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.41  E-value=0.0026  Score=45.97  Aligned_cols=25  Identities=24%  Similarity=0.195  Sum_probs=22.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ....|+|+|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4578999999999999999999865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.39  E-value=0.0021  Score=46.02  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.38  E-value=0.0016  Score=51.38  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|||||||++.+.+..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.38  E-value=0.0021  Score=46.19  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ...|+|+|++||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.38  E-value=0.0028  Score=48.97  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ....|+|+|++|||||||++.|..
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.37  E-value=0.0017  Score=47.85  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.36  E-value=0.0025  Score=45.21  Aligned_cols=23  Identities=26%  Similarity=0.619  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.++|.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999988754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.35  E-value=0.003  Score=45.17  Aligned_cols=24  Identities=21%  Similarity=0.284  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...|+|+|.+||||||+.+.|...
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467899999999999999998653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.35  E-value=0.0022  Score=47.15  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .+.|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.34  E-value=0.0024  Score=45.23  Aligned_cols=23  Identities=17%  Similarity=0.354  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..+.++|++|||||||+.+|...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.33  E-value=0.002  Score=52.37  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .|+|+|++|||||||++.+.+..
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhhc
Confidence            48999999999999999998753

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.33  E-value=0.0023  Score=45.52  Aligned_cols=21  Identities=29%  Similarity=0.210  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      -.+|+|++|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999999865

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.31  E-value=0.0026  Score=45.77  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..|+|+|++||||||+.+.|...
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998753

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.30  E-value=0.001  Score=52.86  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999999764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.29  E-value=0.0026  Score=47.04  Aligned_cols=21  Identities=24%  Similarity=0.477  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+|+|+|||||+|...+|...
T Consensus        32 I~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999998743

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.29  E-value=0.0026  Score=45.15  Aligned_cols=24  Identities=17%  Similarity=0.288  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -..|+|+|.+||||||+.+.|...
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999998753

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.28  E-value=0.0023  Score=50.39  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999865

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.28  E-value=0.0025  Score=46.95  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -++|+|++|+|||||++.+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999998743

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.27  E-value=0.0032  Score=48.12  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCcChHHHHHHHHHHHc
Confidence            48999999999999999998653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.26  E-value=0.0017  Score=48.33  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.-|+|.|+.||||||+++.|.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            357899999999999999999875

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.26  E-value=0.0028  Score=44.56  Aligned_cols=21  Identities=14%  Similarity=0.373  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.26  E-value=0.0032  Score=47.78  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ...|+|+|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.26  E-value=0.0032  Score=45.85  Aligned_cols=23  Identities=17%  Similarity=-0.010  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            36799999999999999999874

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.26  E-value=0.00096  Score=48.76  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999874

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.25  E-value=0.0021  Score=48.54  Aligned_cols=25  Identities=16%  Similarity=0.251  Sum_probs=21.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ....|+++|++||||||+.+.|...
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999998754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.24  E-value=0.003  Score=46.97  Aligned_cols=24  Identities=17%  Similarity=0.385  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...|+|+|++||||||+.+.|...
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999998643

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.24  E-value=0.0026  Score=50.69  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      -.|+++|++||||||+++.|.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            4689999999999999999865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.22  E-value=0.0024  Score=53.28  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|||||||++.+.+..
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998754

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.20  E-value=0.01  Score=48.63  Aligned_cols=24  Identities=21%  Similarity=0.166  Sum_probs=20.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHH
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~   27 (210)
                      .+..-|.|+|+.++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            456778899999999999999654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.20  E-value=0.0031  Score=44.96  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .|+|+|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.19  E-value=0.0036  Score=43.91  Aligned_cols=23  Identities=30%  Similarity=0.431  Sum_probs=19.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .-.|+|.|.+||||||+.+.|..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.18  E-value=0.0026  Score=52.38  Aligned_cols=22  Identities=23%  Similarity=0.455  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|++|||||||++.|.+-
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5899999999999999999765

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.15  E-value=0.003  Score=52.31  Aligned_cols=92  Identities=16%  Similarity=0.066  Sum_probs=49.1

Q ss_pred             EEEEEEecCCcchhhhh-------hHHhh-----ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCC
Q 028303           55 IKLQIWDTAGQESFRSI-------TRSYY-----RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD  122 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~-------~~~~~-----~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (210)
                      +.+.|+||+|.......       .....     ...+-+++|+|++.+....   .....+....  + ...+|+||.|
T Consensus       376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al---~~ak~f~~~~--~-itgvIlTKLD  449 (503)
T 2yhs_A          376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV---SQAKLFHEAV--G-LTGITLTKLD  449 (503)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH---HHHHHHHHHT--C-CSEEEEECGG
T ss_pred             CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH---HHHHHHHhhc--C-CCEEEEEcCC
Confidence            34678999996422221       11111     1356889999987653221   2222222221  2 2357899999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303          123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (210)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  158 (210)
                      -..    ..-.+..++...+.++.++.  +|+++++
T Consensus       450 ~ta----kgG~~lsi~~~~~~PI~fig--~Ge~vdD  479 (503)
T 2yhs_A          450 GTA----KGGVIFSVADQFGIPIRYIG--VGERIED  479 (503)
T ss_dssp             GCS----CCTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             Ccc----cccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence            532    12335566666788876654  4444443

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.15  E-value=0.0044  Score=44.86  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=22.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .+.+.|+|+|.+||||||+.+.|...
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHh
Confidence            35688999999999999999998754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.14  E-value=0.0034  Score=46.94  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .+.|++.|++||||||+.+.|..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999874

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.13  E-value=0.0034  Score=49.81  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      +++++|++|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999874

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.10  E-value=0.0023  Score=50.12  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=21.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .--++|+|+.|||||||++.+.+..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4457899999999999999999764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.09  E-value=0.0033  Score=48.53  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -++|+|++|+|||||++.+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998765

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.09  E-value=0.004  Score=43.12  Aligned_cols=19  Identities=47%  Similarity=0.677  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028303            9 YIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~   27 (210)
                      .+|+|++|+||||++..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4799999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.08  E-value=0.0037  Score=52.60  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.07  E-value=0.0021  Score=45.66  Aligned_cols=24  Identities=25%  Similarity=0.239  Sum_probs=16.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...|+|.|.+||||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999999743

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.07  E-value=0.0033  Score=47.48  Aligned_cols=22  Identities=18%  Similarity=0.253  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      -.|+|+|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999865

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.07  E-value=0.0041  Score=46.89  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .-.+++.|++|+|||+|++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346899999999999999999764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.05  E-value=0.003  Score=44.64  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.++|.|++|+|||+|++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46799999999999999988754

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.05  E-value=0.0039  Score=45.61  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ...|+|+|++||||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.03  E-value=0.0034  Score=52.80  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++++|++|||||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46899999999999999999864

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.02  E-value=0.0044  Score=45.78  Aligned_cols=24  Identities=13%  Similarity=0.224  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .-.++|.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.02  E-value=0.0041  Score=46.20  Aligned_cols=22  Identities=14%  Similarity=0.169  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.01  E-value=0.0041  Score=46.27  Aligned_cols=24  Identities=17%  Similarity=0.225  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.-|++.|++||||||+++.|...
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            467899999999999999999764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.00  E-value=0.0042  Score=45.40  Aligned_cols=21  Identities=29%  Similarity=0.208  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999987

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.99  E-value=0.004  Score=51.54  Aligned_cols=21  Identities=29%  Similarity=0.453  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .++|+|++|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.95  E-value=0.0051  Score=44.46  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.+++.|++|+|||+|++.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999988754

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.94  E-value=0.048  Score=42.37  Aligned_cols=21  Identities=14%  Similarity=0.243  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +++.|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            456677999999999999754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.94  E-value=0.0042  Score=52.97  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      .++|+|++|+|||||++.+.+...
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            479999999999999999997643

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.93  E-value=0.0052  Score=47.18  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .+.|+|.|++||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999873

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.91  E-value=0.023  Score=40.91  Aligned_cols=85  Identities=9%  Similarity=-0.017  Sum_probs=56.0

Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEecCCCCCCCCCCHH
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRAVSKE  132 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~  132 (210)
                      +.+.++|+|+..  .......+..+|.+++++..+...  ..+......+....  ..+.++.+|+|++|....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            567899999865  344556677899999999887654  55666666665443  245678999999995321   224


Q ss_pred             HHHHHHHHcCCeEE
Q 028303          133 EGEQFAKENGLLFL  146 (210)
Q Consensus       133 ~~~~~~~~~~~~~~  146 (210)
                      ++.+.+...+.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            45555555555443

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.89  E-value=0.0047  Score=49.55  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.85  E-value=0.0046  Score=52.49  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            58999999999999999998653

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.85  E-value=0.0062  Score=46.97  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ..|+|+|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999986

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.84  E-value=0.0053  Score=50.26  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      +++++|++|||||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999999764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.79  E-value=0.0053  Score=52.13  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.76  E-value=0.0066  Score=45.20  Aligned_cols=25  Identities=20%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ...++++|+|++||||||+..+|..
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            3568999999999999999998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.75  E-value=0.0056  Score=52.23  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            47999999999999999998864

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.73  E-value=0.0062  Score=44.75  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -++|.|++|+|||+|++.+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5799999999999999998653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.73  E-value=0.0059  Score=48.74  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028303            9 YIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~   27 (210)
                      .+|+|++|||||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999999976

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.73  E-value=0.0065  Score=41.65  Aligned_cols=24  Identities=13%  Similarity=0.127  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      ..|++.|++|+|||++.+.+....
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999997653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.73  E-value=0.0064  Score=51.13  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      .++|+|++|||||||++.+.+...
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998643

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.72  E-value=0.006  Score=46.93  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .-.+++.|++|+|||++++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357899999999999999999864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.71  E-value=0.0052  Score=44.93  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .+++.||||+|||+++..+...
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999998888753

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.70  E-value=0.0071  Score=46.70  Aligned_cols=24  Identities=29%  Similarity=0.164  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...+++.|+||+|||+|++.+...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356788899999999999998754

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.70  E-value=0.0067  Score=43.99  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .+++.|++|+|||++++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.69  E-value=0.0069  Score=46.25  Aligned_cols=24  Identities=21%  Similarity=0.311  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .-.+++.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456999999999999999999764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.69  E-value=0.0057  Score=51.43  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      .++|+|++|||||||++.+.+...
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999997643

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.67  E-value=0.0068  Score=51.71  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      .++|+|++|+|||||++.+.+...
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998643

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.67  E-value=0.0033  Score=48.60  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=18.4

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      |+... +.|+|.|++||||||+.+.|..
T Consensus         1 Ms~~~-~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            1 MSKKH-PIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             -CTTS-CEEEEESCC---CCTHHHHHHH
T ss_pred             CCCCc-eEEEEECCCCCCHHHHHHHHHH
Confidence            55433 5699999999999999998864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.67  E-value=0.008  Score=45.17  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .-.+++.|++|+|||++++.+...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999763

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.66  E-value=0.0065  Score=46.47  Aligned_cols=21  Identities=33%  Similarity=0.439  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.64  E-value=0.0067  Score=46.99  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.|++.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            45899999999999999999864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.62  E-value=0.01  Score=42.94  Aligned_cols=21  Identities=24%  Similarity=0.251  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.53  E-value=0.0092  Score=44.41  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ...|+|+|++||||||+.+.|..
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.51  E-value=0.0078  Score=51.31  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=20.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      ++|+|++|||||||++.+.+...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            79999999999999999998643

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.49  E-value=0.0083  Score=43.62  Aligned_cols=24  Identities=38%  Similarity=0.634  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      ..|+++|++|+|||+|...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.49  E-value=0.0054  Score=52.26  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            68999999999999999998653

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.49  E-value=0.0081  Score=46.89  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.+++.|++|+|||+|++.+.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999998754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.47  E-value=0.037  Score=43.27  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..|+|.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999999754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.46  E-value=0.0081  Score=48.83  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .-|+|+|++||||||+.++|...
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            56889999999999999999753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.45  E-value=0.0085  Score=46.41  Aligned_cols=85  Identities=12%  Similarity=0.024  Sum_probs=47.8

Q ss_pred             EEEEEEecCCcchhhhh----hHHhhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           55 IKLQIWDTAGQESFRSI----TRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                      ..+.|+||+|.......    ....+.  ..+.+++|+|++..  ...+..+...+..   .+ ..-+|+||.|....  
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~--  254 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTS--  254 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSC--
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccc--
Confidence            46789999996644321    112222  36788999988753  2233333222221   12 23466799997432  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEe
Q 028303          129 VSKEEGEQFAKENGLLFLEAS  149 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s  149 (210)
                        ...+...+...++++..+.
T Consensus       255 --~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 --LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             --CHHHHHHHHTCSCCCSEEC
T ss_pred             --hhHHHHHHHHHCcCEEEEE
Confidence              2356667777788765554

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.45  E-value=0.0046  Score=52.46  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++++|++|||||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5799999999999999988865

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.0091  Score=48.66  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=21.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +.-.|++.||||+|||+|++++.+.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3446999999999999999999864

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.41  E-value=0.0099  Score=45.89  Aligned_cols=22  Identities=23%  Similarity=0.542  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ..+++.|++|+|||++++.+..
T Consensus        68 ~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999986654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.37  E-value=0.0093  Score=48.67  Aligned_cols=25  Identities=20%  Similarity=0.232  Sum_probs=21.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +.-.|++.||||+|||+|++++.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            4457999999999999999999864

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.37  E-value=0.013  Score=44.40  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ....+++.|++|+|||+|++.+...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4567999999999999999999764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.36  E-value=0.0078  Score=47.44  Aligned_cols=22  Identities=18%  Similarity=0.460  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .+++.|++|+||||+++.+.+.
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998773

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.34  E-value=0.0062  Score=51.77  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++++|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998865

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.34  E-value=0.011  Score=43.08  Aligned_cols=19  Identities=47%  Similarity=0.677  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028303            9 YIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~   27 (210)
                      .+|+|++|+||||++..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4789999999999999874

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.34  E-value=0.01  Score=44.10  Aligned_cols=21  Identities=29%  Similarity=0.416  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      -++|+|++|+|||+|+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999877753

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.34  E-value=0.0096  Score=47.19  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.++|.|++|+|||+|++.+...
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.31  E-value=0.011  Score=46.08  Aligned_cols=86  Identities=21%  Similarity=0.133  Sum_probs=48.1

Q ss_pred             EEEEEEecCCcchhhhhh-------HHh-----hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCC
Q 028303           55 IKLQIWDTAGQESFRSIT-------RSY-----YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD  122 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~-------~~~-----~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (210)
                      +.+.++||||........       ...     ...++.+++|+|+....  +.+.. ...+....  + ..-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence            357899999963222110       111     13478899999987432  22222 12222221  2 2356789999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEEec
Q 028303          123 LAHRRAVSKEEGEQFAKENGLLFLEASA  150 (210)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa  150 (210)
                      ....-    -.+.......+.|+.++..
T Consensus       261 ~~~~g----G~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTAKG----GITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCSCT----THHHHHHHHHCCCEEEEEC
T ss_pred             Cccch----HHHHHHHHHHCCCEEEEeC
Confidence            64322    2366777778888777754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.30  E-value=0.01  Score=46.70  Aligned_cols=23  Identities=17%  Similarity=0.463  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .+++.|++|+||||+++.+.+.-
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999987653

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.27  E-value=0.012  Score=46.05  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998753

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.26  E-value=0.01  Score=47.02  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -+.|+|++|+|||||++.+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998753

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.25  E-value=0.011  Score=45.43  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..+++.|++|+|||++++.+...
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998754

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.24  E-value=0.011  Score=46.31  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.|++.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46899999999999999999864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.22  E-value=0.011  Score=45.54  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            46999999999999999998754

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.22  E-value=0.011  Score=48.26  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=21.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +.-.|++.||||+|||+|++++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4467999999999999999999864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.21  E-value=0.0015  Score=48.59  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      ++|+|++|||||||++.+.+...
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcccc
Confidence            36789999999999999876543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.20  E-value=0.014  Score=46.20  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=19.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ..+|+++|++|+||||+.+.|..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            46799999999999999987654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.19  E-value=0.013  Score=46.64  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|.|++|+|||+|++.+....
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998653

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.18  E-value=0.012  Score=46.39  Aligned_cols=23  Identities=35%  Similarity=0.600  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .-|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            46899999999999999998753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.17  E-value=0.013  Score=45.81  Aligned_cols=24  Identities=25%  Similarity=0.355  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...|++.|++|+|||+|++.+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            357999999999999999999754

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.16  E-value=0.012  Score=47.46  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=21.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +.-.|++.||||+|||.|++.+.+.
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHh
Confidence            4457999999999999999999864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.14  E-value=0.017  Score=42.75  Aligned_cols=25  Identities=16%  Similarity=0.080  Sum_probs=21.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ....-|++.|..||||||+++.|..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.14  E-value=0.014  Score=46.03  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -|+|+|++|||||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999854

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.13  E-value=0.19  Score=37.07  Aligned_cols=91  Identities=12%  Similarity=0.081  Sum_probs=59.3

Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHH
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE  133 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  133 (210)
                      .+.+.++|+|+.-.  ......+..+|.+++|+..+ ..+...+...+..+.........+.+|+|+++...  ....++
T Consensus       118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~~  192 (245)
T 3ea0_A          118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSDE  192 (245)
T ss_dssp             HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHHH
T ss_pred             hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHHH
Confidence            35688999987542  34556678899999999875 45666777777766554333456789999998643  233333


Q ss_pred             HHHHHHHcCCeEEEEecCC
Q 028303          134 GEQFAKENGLLFLEASART  152 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~sa~~  152 (210)
                      +   ....+.+++..-..+
T Consensus       193 ~---~~~~~~~v~~~ip~~  208 (245)
T 3ea0_A          193 I---EKVIGRPISKRIPQD  208 (245)
T ss_dssp             H---HHHHTSCEEEEECCC
T ss_pred             H---HHHhCCCeEEECCCC
Confidence            3   334567776654444

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=95.13  E-value=0.12  Score=37.59  Aligned_cols=86  Identities=13%  Similarity=0.063  Sum_probs=55.6

Q ss_pred             EEEEEEEecCCc-chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028303           54 PIKLQIWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE  132 (210)
Q Consensus        54 ~~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  132 (210)
                      .+.+.++|+|+. ...  .....+..+|.+|+++..+. .+...+...+..+....  +.++.+|+|+.|....  ....
T Consensus        67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~  139 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGD  139 (209)
T ss_dssp             GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHH
T ss_pred             cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHH
Confidence            356789999986 432  34456778999999998763 45566666666665532  4678899999986430  1134


Q ss_pred             HHHHHHHHcCCeEE
Q 028303          133 EGEQFAKENGLLFL  146 (210)
Q Consensus       133 ~~~~~~~~~~~~~~  146 (210)
                      ++.+.+...+.+++
T Consensus       140 ~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          140 EARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHcCCchh
Confidence            55555555565543

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.12  E-value=0.014  Score=45.49  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .-|+|+||+|||||+|...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            35789999999999999999754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.10  E-value=0.014  Score=54.35  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +|+++|++|||||||++.|.+-
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            7899999999999999999854

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.06  E-value=0.015  Score=52.09  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      .++|+|++|||||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            479999999999999999996543

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.98  E-value=0.01  Score=44.99  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=21.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ....|+|.|..||||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3478999999999999999988754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.98  E-value=0.015  Score=45.72  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998754

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.95  E-value=0.02  Score=40.64  Aligned_cols=24  Identities=33%  Similarity=0.577  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .-|++.|++|+||||+...|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            468999999999999999998753

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.94  E-value=0.0067  Score=45.89  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.+++.|++|+|||+|++.+...
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            34889999999999999998764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.94  E-value=0.017  Score=41.28  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ++|+|.++||||+|..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999854

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.92  E-value=0.013  Score=46.40  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .-.++|.|++|+|||+|++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.91  E-value=0.0096  Score=50.16  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -..|+|+|++|||||||++.|.+.
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHh
Confidence            357899999999999999998865

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.90  E-value=0.0081  Score=53.81  Aligned_cols=23  Identities=35%  Similarity=0.563  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|||||||++.|.+..
T Consensus       701 ivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999764

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.89  E-value=0.016  Score=47.11  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=21.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +.-.|++.||||+|||+|++++.+.
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCCceECCCCchHHHHHHHHHHH
Confidence            3457999999999999999999864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.89  E-value=0.015  Score=46.00  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|.|++|+|||+|++.+...
T Consensus        72 ~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.86  E-value=0.021  Score=42.55  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..|++.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999999764

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.85  E-value=0.015  Score=48.87  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++++|++|+|||||++.+.+.
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999998754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.84  E-value=0.015  Score=48.63  Aligned_cols=20  Identities=25%  Similarity=0.630  Sum_probs=0.0

Q ss_pred             EEEEcCCCCCHHHHHHH--HHh
Q 028303            9 YIIIGDTGVGKSCLLLQ--FTD   28 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~--l~~   28 (210)
                      ++|+|++|||||||++.  +.+
T Consensus        42 ~~l~G~nGsGKSTL~~~~ll~G   63 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFLYNG   63 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.83  E-value=0.017  Score=45.88  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.|+|.|++|+|||+|++.+...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-62
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-57
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-55
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	4e-55
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	8e-55
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-54
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-54
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-54
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-53
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	8e-53
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-51
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-50
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	7e-47
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-43
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	9e-43
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	6e-40
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-39
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-39
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-39
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-38
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	4e-38
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-38
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-37
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-37
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	6e-36
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	6e-36
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-35
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-35
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	6e-35
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	4e-34
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-33
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-33
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-32
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-32
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	4e-32
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	7e-31
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-30
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-30
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-30
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-30
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	4e-28
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	6e-27
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-26
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	4e-26
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-25
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-25
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-25
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-23
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	7e-23
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-23
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-22
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-22
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-21
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	8e-19
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	4e-18
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	9e-17
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-12
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	5e-11
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-07
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-06
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	4e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	4e-06
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	5e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	7e-05
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	9e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	2e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	3e-04
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	3e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.001
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	0.003

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  189 bits (481), Expect = 3e-62
 Identities = 82/172 (47%), Positives = 122/172 (70%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YDYLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R + +DG+ IKLQIWD
Sbjct: 2   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKC
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 121

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           D+  +R VSKE GE+ A + G+ F+E SA+   NVE AF   A  I   + +
Sbjct: 122 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  176 bits (447), Expect = 3e-57
 Identities = 76/169 (44%), Positives = 119/169 (70%), Gaps = 1/169 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVTIDGRPIKLQIW 60
            YD  FK +++GD+GVGK+CLL++F D  F       T+G++F  +++ +DG  +KLQ+W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++++ML+GNK
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 121

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            D AH R V +E+GE+ AKE GL F+E SA+T  NV+ AF   A ++ +
Sbjct: 122 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  172 bits (437), Expect = 1e-55
 Identities = 80/166 (48%), Positives = 112/166 (67%), Gaps = 1/166 (0%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           E FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++LVGNK D+  
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
            R V+ ++GE  AKE G+ F+E+SA+   NV E F   A  I + I
Sbjct: 121 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  171 bits (435), Expect = 4e-55
 Identities = 84/175 (48%), Positives = 125/175 (71%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + V +DG+ +KLQIWDT
Sbjct: 3   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKCD
Sbjct: 63  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 122

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
           L  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I +++ +  L+
Sbjct: 123 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 177

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  170 bits (431), Expect = 8e-55
 Identities = 103/173 (59%), Positives = 135/173 (78%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YD+LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG++++ + G+ +KLQIWD
Sbjct: 1   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 60

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK 
Sbjct: 61  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 120

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
           DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF++ A KIL  I+ G
Sbjct: 121 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG 173

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  169 bits (430), Expect = 1e-54
 Identities = 81/168 (48%), Positives = 114/168 (67%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD+LFK ++IG+ GVGK+CL+ +FT   F P    TIGV+F  + V I+G  +KLQIWDT
Sbjct: 2   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+A+  +  +LVGNK D
Sbjct: 62  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 121

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           LA RR VS++  E+F++   + +LE SA+ + NVE+ F+  A +++  
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  169 bits (429), Expect = 2e-54
 Identities = 91/174 (52%), Positives = 118/174 (67%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176
           L H RAV  +E   FA++N L F+E SA  + NVEEAF     +I + + +  +
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  168 bits (426), Expect = 4e-54
 Identities = 113/165 (68%), Positives = 135/165 (81%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK D
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (421), Expect = 3e-53
 Identities = 140/170 (82%), Positives = 154/170 (90%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV IDG+ IKLQIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH++ NM IML+GNK DL 
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
            RR V +EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQ+G
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 171

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  165 bits (418), Expect = 8e-53
 Identities = 72/167 (43%), Positives = 105/167 (62%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           +DY+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +  + + IKLQIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKCD
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           +   R VS E G Q A   G  F EASA+   NV++ F +    I +
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (407), Expect = 5e-51
 Identities = 78/170 (45%), Positives = 109/170 (64%), Gaps = 2/170 (1%)

Query: 3   YDYL--FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
            D L   K +IIG++GVGKS LLL+FTD  F P    TIGV+F  + +++DG   KL IW
Sbjct: 2   EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQE FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   +   N  + ++   
Sbjct: 62  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 121

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
                 R V + EG +FA+++ +LF+EASA+T   V+ AF +   KI+Q 
Sbjct: 122 KIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  160 bits (405), Expect = 1e-50
 Identities = 64/182 (35%), Positives = 109/182 (59%), Gaps = 11/182 (6%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI----------DG 52
           YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F  + V              
Sbjct: 2   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61

Query: 53  RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM 112
             + LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ +W+   + +A    
Sbjct: 62  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121

Query: 113 -SIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
             I+L+GNK DL  +R V++ +  + A + G+ + E SA T QNVE+A       I++ +
Sbjct: 122 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 181

Query: 172 QE 173
           ++
Sbjct: 182 EQ 183

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (378), Expect = 7e-47
 Identities = 70/161 (43%), Positives = 106/161 (65%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R I+LQ+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +A A++VYDIT   +F   + W++D R     ++ IMLVGNK DLA +
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (357), Expect = 1e-43
 Identities = 58/165 (35%), Positives = 99/165 (60%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           Y FK +++G+  VGK+ L+L++ + +F   H  T+G  F  + + I G+ + L IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK DL 
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
             R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (351), Expect = 9e-43
 Identities = 72/164 (43%), Positives = 110/164 (67%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 6e-40
 Identities = 63/171 (36%), Positives = 103/171 (60%), Gaps = 6/171 (3%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
             LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +DG  + +QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGN 119
           GQE FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++GN
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 120 KCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQ 169
           K D++ R+ VS EE + + ++NG   + E SA+ A NV  AF +   ++L 
Sbjct: 124 KIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 1e-39
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 2/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +F  + + +D  P  L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
            F S+   Y +   G +LVY +  +++F +      +  R      + ++LVGNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            R VS  EG   A+E G  F+E SA++   V+E F +   ++  
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 2e-39
 Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 14/180 (7%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
               + K +++GD  VGK+CLL+ + +  F   +  T+  +  A  VT+ G+   L ++D
Sbjct: 5   PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE +  +    Y      L+ + +    +F ++        +   PN+  +L+G + 
Sbjct: 64  TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQI 123

Query: 122 DL------------AHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
           DL               + +  E+G++ AKE G   ++E SA T + ++  F +    IL
Sbjct: 124 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 3e-39
 Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 14/180 (7%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+  +  A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +  +    Y      L+ + +    +F ++         H  P    +LVG + DL   
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 127 RAV------------SKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
            +             + E  E+ A++   + ++E SA T + ++  F +     L+  + 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  128 bits (322), Expect = 2e-38
 Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 2/164 (1%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  + V +DG  +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
            +R VS EE +  A +  + ++E SA+T  NV++ F     +I 
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  127 bits (320), Expect = 4e-38
 Identities = 66/161 (40%), Positives = 99/161 (61%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  ++GDTGVGKS ++ +F +  F P  + TIG  F  + V       K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH  P++ + + GNKCDL   
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R V + + + +A     +F+E SA+ A N+ E FI+ + +I
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 6e-38
 Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 14/176 (7%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+  +  +  V +DG+P+ L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +  +    Y     +L+ + +    +F ++ +      +H  PN  I+LVG K DL   
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 127 RAVSKE------------EGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQ 169
           +   ++            +G   AKE G + +LE SA T + ++  F +    +L 
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (317), Expect = 1e-37
 Identities = 67/164 (40%), Positives = 98/164 (59%), Gaps = 5/164 (3%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           +FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R V IDG  IK+Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 66  ESF-RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDL 123
           E F +S+ + YYR     + VYD+T   +F+ L +W+E+ +QH    ++  +LVGNKCDL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQ---NVEEAFIKTA 164
                V  +  ++FA  + +   E SA+      +VE  F+  A
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 2e-37
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  ++V        L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E  ++  +  ++ ++LVGNKCD   
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LA 121

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 6e-36
 Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 2/171 (1%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
               K +++G  GVGKS L +QF    F   +D     +   ++ ++DG P +L I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTA 62

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCD 122
           GQE F ++   Y R   G LLV+ I  R++FN +   + +  R     +  ++LVGNK D
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           L  +R V + E   F   + + + EASA+   NV+EAF +    + +  ++
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  122 bits (307), Expect = 6e-36
 Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 4/172 (2%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V +D R + +QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++GNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+   E
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 173

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 1e-35
 Identities = 59/168 (35%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           ++ +++G  GVGKS L +QF    F   +D TI  +   +   ID R  +L I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y R   G LLV+ +T R +F  +  +  +  R        ++L+GNK DL H
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           +R V++EEG+Q A++  + ++EASA+   NV++AF     ++++  QE
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF-HELVRVIRKFQE 171

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  120 bits (302), Expect = 2e-35
 Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 3/163 (1%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++G+  VGKS ++L+F    F    + TIG  F  + VTI+   +K +IWDTAGQE 
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           F S+   YYR A  AL+VYD+T+ ++F     W+++  + A+ ++ I LVGNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 126 -RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
             R V++EEGE+ A+E GLLF E SA+T +NV + F+    KI
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 6e-35
 Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +   + V +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V KE+G+  A++     FLE+SA++  NV E F     +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 4e-34
 Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 14/176 (7%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +I+GD   GK+CLL+  +  +F  V+  T+  E     + +DG+ ++L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL + 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 127 RAVSK------------EEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
               +            EEG   A   G   ++E SA+T   V E F       LQ
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (288), Expect = 2e-33
 Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 1/162 (0%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++G+  VGKS ++ ++    F   +  TIGV+F  R + ++   ++L +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
           F +IT++YYRGA   +LV+  T RE+F  +SSW E        ++   LV NK DL    
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK-VVAEVGDIPTALVQNKIDLLDDS 122

Query: 128 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            +  EE E  AK   L F   S +   NV E F   A K LQ
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  114 bits (285), Expect = 8e-33
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +    +       T     G  + T+  + +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSV-----TTIPTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAH 125
             R + R YY G  G + V D   R+  +     L          +  I++  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 126 RR---AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
                 + ++ G    ++       + A +   + E      +  
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (284), Expect = 1e-32
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++GD GVGKS L +QF  K F P +D TI   +  +   ID +   L + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQE 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y R   G L+VY +T + +F H+  + +   R     +  ++LV NK DL H
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQ 169
            R V++++G++ A +  + ++E SA+    NV++ F      I Q
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (284), Expect = 1e-32
 Identities = 64/174 (36%), Positives = 102/174 (58%), Gaps = 7/174 (4%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPI-KLQIWDTAG 64
           + K II+GD+GVGK+ L+ ++ + ++   +  TIG +F  + VT+DG  +  +Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN----MSIMLVGNK 120
           QE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++   HAN N       +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 121 CDLAHRRAVSKEEGEQ-FAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
            D    + +  E+  Q  AK  G +     SA+ A NV+ AF + A   LQ  Q
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 175

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (281), Expect = 4e-32
 Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 14/176 (7%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+  E       ID + I+L +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---- 123
           + ++    Y  +   L+ +DI+R ET + +    +   Q   PN  ++LVG K DL    
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 124 --------AHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQN 170
                     +  VS ++G   AK+ G   ++E SA  ++N        A     N
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 7e-31
 Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 4/165 (2%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  I G  GVGKS L+++F  KRF   +D T+   +     TID   + ++I DT   +
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDT-AGQ 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
                   + R   G +LVYDIT R +F   L             N++++LVGNK DL H
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQ 169
            R VS EEGE+ A E    F E SA T + N+ E F +   ++ +
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 1e-30
 Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 3/166 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           ++  + G  GVGKS L+L+F    F+  +  T+   +   +         LQI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDK-SICTLQITDTTGSH 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLA 124
            F ++ R         +LVY IT R++   L    E   +      ++ IMLVGNKCD +
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
             R V   E E  A+     F+E SA+   NV+E F +      + 
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  107 bits (268), Expect = 2e-30
 Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 9/164 (5%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           + +++G    GK+ +L +            T     G  + T++ + I   +WD  GQ+ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC---DL 123
            R + R Y++   G + V D   RE  N      +    +    +  +++  NK    + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +   ++ + G    +          A +   + E     + ++
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  108 bits (269), Expect = 2e-30
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 9/167 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +I+G  G GK+ +L +                  G  + T+  + +KL +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETLSYKNLKLNVWDLGGQT 72

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAH 125
           S R   R YY   A  + V D T ++  +  S  L    Q     + ++++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 126 R---RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
                 VSKE      K+     + +SA   + + E        I +
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 2e-30
 Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDR 122

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           +   K +   F ++  L + + SA++  N E+ F+  A K++ +
Sbjct: 123 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 164

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  102 bits (254), Expect = 4e-28
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 9/165 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K II+G    GK+ +L QF+                G+ +  I     +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-SIMLVGNKCDLAH 125
           S RS   +YY      ++V D T RE  +     L     H +     +++  NK D+  
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 126 R---RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
                 +S+       K++        A T + + +      +++
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.0 bits (245), Expect = 6e-27
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  I+G   VGKS L +QF + +F   +D TI   F  +++T++G+   LQ+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQD 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAH 125
            +    ++Y     G +LVY +T  ++F  +               + IMLVGNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            R +S EEG+  A+     FLE+SA+  Q   + F +   + 
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (241), Expect = 2e-26
 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 3/169 (1%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDT 62
           +  ++ ++IG+ GVGKS L   F         D   +G +   R + +DG    + + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 63  A-GQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNK 120
              +     +     +     L+VY IT R +F       ++  R     ++ I+LVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            DL   R VS  EG   A      F+E SA    NV+E F     ++  
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 169

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (241), Expect = 4e-26
 Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 7/170 (4%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            +  ++GD   GKS L+ +F    +Q +       E   + + +DG+   + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGA- 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD--LA 124
              +    +         + D    +  + L   L   R      +++ LVG +     +
Sbjct: 63  -PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121

Query: 125 HRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
             R V          +     + E  A    NV+  F + A K++   ++
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQ 171

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.6 bits (236), Expect = 1e-25
 Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 3/167 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L   F      P            R + +DG    L ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIML-VGNKCDLAH 125
             R +           ++VY +T + +F   S      R+    +   ++ VGNK DL  
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
            R VS +EG   A      F+E SA    NV+  F     +I     
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRD 166

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 95.1 bits (235), Expect = 2e-25
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 9/165 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++ R  KL IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCDLAH 125
           S RS  R+Y+    G + V D   R+              +      ++++  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 126 RRAVSK---EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
             + +           + +       SA T +++          I
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 95.0 bits (235), Expect = 2e-25
 Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 9/170 (5%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           + D   + +++G    GK+ LL Q   +    +         G  + ++  +  KL +WD
Sbjct: 12  APDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-----TQGFNIKSVQSQGFKLNVWD 66

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNK 120
             GQ   R   RSY+      + V D   R+ F      L +  +      + +++  NK
Sbjct: 67  IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126

Query: 121 CDLAHRR---AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            DL        +++       ++        SA T + V++        +
Sbjct: 127 QDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 90.5 bits (223), Expect = 1e-23
 Identities = 29/169 (17%), Positives = 64/169 (37%), Gaps = 12/169 (7%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            +  ++G    GK+  +      +F      T     G  M  I    + +++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPT----VGFNMRKITKGNVTIKLWDIGGQP 58

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLA- 124
            FRS+   Y RG +  + + D   +E      + L +         + ++++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 125 --HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
               + + ++      ++  +     S +   N++         ++Q+ 
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL----QWLIQHS 163

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.6 bits (218), Expect = 7e-23
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 16/164 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K + +G    GK+ LL    + R       T+   +      +    IK   +D  G   
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHR 126
            R + + Y+    G + + D    E F+     L+     A   ++  +++GNK D  + 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 127 RAVSK----------EEGEQFAKENGLLFLEASARTAQNVEEAF 160
            + ++             ++   +  +     S        EAF
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 88.2 bits (217), Expect = 8e-23
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 9/165 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +I+G  G GK+ +L +                  G  + T+  + +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIP-----TIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 67  SFRSITRSYYRGAAGALLVYDIT-RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           S R   R YY      + V D   R       S  +    +       +++  NK D+  
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 126 RRAVSK---EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
               S+     G    K+      + SA     ++EA       +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.4 bits (221), Expect = 1e-22
 Identities = 23/179 (12%), Positives = 47/179 (26%), Gaps = 20/179 (11%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           Y    + +++G    GKS ++ Q            T G+             +   ++D 
Sbjct: 3   YRATHRLLLLGAGESGKSTIVKQMRILHVVL----TSGIFE----TKFQVDKVNFHMFDV 54

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE-----------DARQHANPN 111
            GQ   R      +      + V   +         +                       
Sbjct: 55  GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114

Query: 112 MSIMLVGNKCDLAHRRAVSKEEG-EQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           +S++L  NK DL   + ++ +   E +  E         A      +    +    I  
Sbjct: 115 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRD 173

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.4 bits (218), Expect = 2e-22
 Identities = 35/199 (17%), Positives = 57/199 (28%), Gaps = 31/199 (15%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K +++G    GKS  L Q    R     D T G+         + + +  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE----YDFEIKNVPFKMVDVGGQ 54

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-----------RQHANPNMSI 114
            S R      +      L +   +  +                             N+SI
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 115 MLVGNKCDLAHRRAVSKEEGEQF------------AKENGLLFLEASARTAQNVEEAFIK 162
           +L  NK DL   +       + F             ++  +       R  Q        
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 163 TAAKILQNIQEGALDAVND 181
           T A   +NI+      V D
Sbjct: 175 TTAINTENIRL-VFRDVKD 192

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.8 bits (211), Expect = 1e-21
 Identities = 30/201 (14%), Positives = 56/201 (27%), Gaps = 43/201 (21%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++G    GKS  + Q        V   T G+         D + +  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGSGVP--TTGIIE----YPFDLQSVIFRMVDVGGQR 56

Query: 67  SFRSITRSYYRGAAGALLVYDIT-----------RRETFNHLSSWLEDARQHANPNMSIM 115
           S R      +      + +  ++                   + +          N S++
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 116 LVGNKCDLAHRRAVSKEEGEQFAKENG--------------------------LLFLEAS 149
           L  NK DL   + +     + F + +G                          +      
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 150 ARTAQNVEEAFIKTAAKILQN 170
           A   +N+   F      ILQ 
Sbjct: 177 ATDTENIRFVFAAVKDTILQL 197

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 78.2 bits (191), Expect = 8e-19
 Identities = 30/181 (16%), Positives = 48/181 (26%), Gaps = 21/181 (11%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           Y    K + +G    GK+ LL    D R                   +    +    +D 
Sbjct: 10  YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-----TLHPTSEELTIAGMTFTTFDL 64

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKC 121
            G    R + ++Y     G + + D    E        L          N+ I+++GNK 
Sbjct: 65  GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 124

Query: 122 DLAHRRAVSK---------------EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166
           D     +  +                   +      L     S    Q   E F   A  
Sbjct: 125 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184

Query: 167 I 167
           I
Sbjct: 185 I 185

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.5 bits (187), Expect = 4e-18
 Identities = 27/201 (13%), Positives = 54/201 (26%), Gaps = 46/201 (22%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++G    GKS ++ Q              G+           + +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEA-----GTGIVE----THFTFKDLHFKMFDVGGQR 53

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSS-----------WLEDARQHANPNMSIM 115
           S R      + G    +    ++  +                  +          + SI+
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 116 LVGNKCDLAHRRAVSKEEGEQFAKENG--------------------------LLFLEAS 149
           L  NK DL   +         + +  G                          +      
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 150 ARTAQNVEEAFIKTAAKILQN 170
           A   +NV+  F      I++N
Sbjct: 174 ATDTKNVQFVFDAVTDVIIKN 194

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.1 bits (178), Expect = 9e-17
 Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 18/195 (9%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           + +G    GK+ L ++    +++     +I        V  +       I     +    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 70  SITRSYYRGAAGALLVYDITRRETF-----NHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
            +   +   A   + V D    +         L   L D+    N + S+++  NK D+A
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKN-SPSLLIACNKQDIA 121

Query: 125 HRRAVSKEEGEQFAKE---------NGLLFLEASARTAQNVEEAFIKTA-AKILQNIQEG 174
             ++  K   +Q  KE              L++S+     + +   +   +++   ++  
Sbjct: 122 MAKSA-KLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFL 180

Query: 175 ALDAVNDSGIKVGYG 189
              A    G      
Sbjct: 181 ECSAKGGRGDTGSAD 195

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.2 bits (147), Expect = 3e-12
 Identities = 34/201 (16%), Positives = 57/201 (28%), Gaps = 27/201 (13%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           Y    II G    GK+ LL   T    +P    T+  +        DG  +   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 65  QESFRSITRSYYRGAAGA-----LLVYDITRRETFNHLSSWLED----ARQHANPNMSIM 115
               R     Y +  A        +V      +     + +L D            + I+
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 116 LVGNKCDLAHRRAVSKEEGEQFAKE---------NGLLFLEASARTAQNVEEAF--IKTA 164
           +  NK +L   R    +  +    E           L  +E         E     +++ 
Sbjct: 116 IACNKSELFTARPP-SKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQST 174

Query: 165 AKILQNIQEGALDAVNDSGIK 185
                   E ++ A   S  K
Sbjct: 175 DGFKFANLEASVVAFEGSINK 195

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 56.7 bits (135), Expect = 5e-11
 Identities = 29/152 (19%), Positives = 47/152 (30%), Gaps = 1/152 (0%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +I G    GKS LL     +    V D   G         I    + L I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
                        A   +          +  ++   D  +     ++ +       +   
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158
           +A    E    ++ NG   +  SART + V+ 
Sbjct: 121 KADITGETLGMSEVNGHALIRLSARTGEGVDV 152

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 28/156 (17%), Positives = 43/156 (27%), Gaps = 11/156 (7%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----E 66
           ++G    GKS LL   T    +        +     +V +     +  + D  G      
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGAS 64

Query: 67  SFRSITRSYYRGAAGALL---VYDITRRETFNHLSSWLEDARQHANPNMSIML-VGNKCD 122
             + +   + R  A   +   V D          +   E             L   NK D
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158
           L    AV  +         GL  L  SA T   +  
Sbjct: 125 LLEEEAV--KALADALAREGLAVLPVSALTGAGLPA 158

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 24/160 (15%), Positives = 51/160 (31%), Gaps = 19/160 (11%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF---------GARMVTIDGRPIKLQ 58
           + +I+G   VGKS LL +  ++    V D+               G     +D   ++ +
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 59  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG 118
             D   +      T      A   L V D +                +     ++ + V 
Sbjct: 62  TNDLVERLGIER-TLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 119 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158
            K +        +E   +   +  ++ +  SA   + +E+
Sbjct: 121 EKIN-------EEEIKNKLGTDRHMVKI--SALKGEGLEK 151

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.2 bits (100), Expect = 4e-06
 Identities = 34/170 (20%), Positives = 54/170 (31%), Gaps = 13/170 (7%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70
           I+G   VGKS LL      +  P+               +     ++   DT G      
Sbjct: 10  IVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 68

Query: 71  ITRSYYR------GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
               +         A    +V+ +  R         +  A +     + I+LVGNK D A
Sbjct: 69  ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 128

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
                + +   +   E     L  SA   + V E      A +L  + EG
Sbjct: 129 KYPEEAMKAYHELLPEAEPRML--SALDERQVAELK----ADLLALMPEG 172

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (101), Expect = 4e-06
 Identities = 22/165 (13%), Positives = 44/165 (26%), Gaps = 10/165 (6%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D   +    G +  GKS  L   T+++       T G      +  +      + +    
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 64  GQESFRSI-------TRSYYRGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSI 114
             E    +          Y         +  +              +E A       + +
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 115 MLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEE 158
           +   +K     R+A      E     NG +     S+   Q V++
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.2 bits (100), Expect = 5e-06
 Identities = 23/169 (13%), Positives = 54/169 (31%), Gaps = 10/169 (5%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT-----AGQ 65
           I+G   VGKS LL +   ++                 +  +G    + +          +
Sbjct: 10  IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
              R + ++         LV  +     +      + +  +     + I+ V    ++  
Sbjct: 70  AINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPV-ILAVNKVDNVQE 128

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
           +  +        ++ N L  +  SA T  NV+       A + +++ E 
Sbjct: 129 KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIA----AIVRKHLPEA 173

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (94), Expect = 7e-05
 Identities = 26/156 (16%), Positives = 40/156 (25%), Gaps = 12/156 (7%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPI--KLQIWDTAGQESF 68
           + G+TG GKS  +        +       GV            P    +  WD  G  S 
Sbjct: 61  VTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST 120

Query: 69  RSITRSY---YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
                +Y    +       +     R   N +      +            V  K D   
Sbjct: 121 NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM----KKEFYFVRTKVDS-D 175

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161
               +  E + F KE  L  +  +        E  I
Sbjct: 176 ITNEADGEPQTFDKEKVLQDIRLN--CVNTFRENGI 209

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.5 bits (91), Expect = 9e-05
 Identities = 24/177 (13%), Positives = 53/177 (29%), Gaps = 14/177 (7%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR-MVTIDGRPIKLQIWDTAGQESFR 69
           ++G   VGKS LL   +  + +        +      + T DGR     + D  G     
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSF--VMADLPGLIEGA 63

Query: 70  S----ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
                +   + R      ++  +           + +    +   +   + +  +  +  
Sbjct: 64  HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV 123

Query: 126 RRAVSKEEGEQFAKE------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176
              +   E  +  +       +       SA T + + E  +   A  L+N  E  L
Sbjct: 124 ANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRE-LLFEVANQLENTPEFPL 179

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 23/165 (13%), Positives = 38/165 (23%), Gaps = 14/165 (8%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  I+G   VGKS L     +K    V  +                  K    DTAG  
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-RKYVFVDTAGLR 67

Query: 67  SFRSITR---------SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV 117
               +                   A +V  +                        S+++ 
Sbjct: 68  RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127

Query: 118 GNK----CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158
                           +K   E+    +    +  SA    N++ 
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR 172

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 12/172 (6%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70
           I+G   VGKS L  +   K+   V D         +            +      ++ + 
Sbjct: 5   IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD 64

Query: 71  ITRSYYRGAA-----GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           I     +         A LV  +               A       +  +LV NK +   
Sbjct: 65  IISQKMKEVTLNMIREADLVLFVVDG-KRGITKEDESLADFLRKSTVDTILVANKAENL- 122

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
            R   +E   +         +  SA    N++         I++ ++E  LD
Sbjct: 123 -REFEREVKPELYSLGFGEPIPVSAEHNINLDTML----ETIIKKLEEKGLD 169

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 16/162 (9%), Positives = 42/162 (25%), Gaps = 9/162 (5%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG- 64
           L +  + G + VGKS  +    +++         G         I+     + +      
Sbjct: 23  LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82

Query: 65  -----QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
                +          Y      L              +  ++         + ++++  
Sbjct: 83  KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIAT 142

Query: 120 KCDLAHRRAVSK---EEGEQFAKENGLLFLEASARTAQNVEE 158
           K D   +    K      +    +     +  S+ T +  +E
Sbjct: 143 KADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDE 184

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 34/186 (18%), Positives = 55/186 (29%), Gaps = 28/186 (15%)

Query: 10  IIIGDTGVGKSCLLLQFTDKR------------------FQPVHDLTIGVEFGARMVTID 51
           I  G + VGKS L+ + T K+                           G  F   +    
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63

Query: 52  GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN 111
              IK +I      E              G      I R E    +   +E  +     +
Sbjct: 64  QERIKDEIVHF--IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121

Query: 112 MSIMLVGNKCDLAHRRAVS----KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           +  ++  NK D             E+ E    E   +F+  SA+   N+E        +I
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLK----NRI 177

Query: 168 LQNIQE 173
            + I+E
Sbjct: 178 FEVIRE 183

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 21/145 (14%), Positives = 40/145 (27%), Gaps = 12/145 (8%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG-- 64
              +++G  GVGKS  +     +R   +            MV+       L I DT G  
Sbjct: 33  LTILVMGKGGVGKSSTVNSIIGERVVSISPFQ-SEGPRPVMVSRSRAGFTLNIIDTPGLI 91

Query: 65  -----QESFRSITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPN--MSIM 115
                 +   +I +S+   +     L V  +      N      +              +
Sbjct: 92  EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAI 151

Query: 116 LVGNKCDLAHRRAVSKEEGEQFAKE 140
           +       +    +  +E      E
Sbjct: 152 VALTHAQFSPPDGLPYDEFFSKRSE 176

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.89
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.89
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.89
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.89
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.87
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.87
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.85
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.83
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.83
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.82
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.82
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.77
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.76
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.76
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.72
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.69
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.69
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.68
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.67
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.67
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.65
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.58
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.58
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.51
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.37
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.26
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.24
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.22
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.1
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.05
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.0
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.0
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.57
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.53
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.39
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.36
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.27
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.24
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.17
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.15
d1okkd2	207	GTPase domain of the signal recognition particle r	98.12
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.12
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.05
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.03
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.01
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.67
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.62
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.6
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.53
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.5
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.47
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.41
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.41
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.4
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.39
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.34
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.34
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.33
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.33
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.28
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.2
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.19
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.16
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.14
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.14
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.14
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.11
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.1
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.1
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.1
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.09
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.07
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.04
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.03
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.03
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.02
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.02
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.01
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.01
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.0
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.99
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.98
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.98
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.98
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.98
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.97
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.96
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.91
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.9
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.9
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.88
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.87
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.87
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.86
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.86
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.85
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.84
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.84
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.77
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.77
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.76
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.73
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.71
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.67
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.66
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.65
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.6
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.59
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.57
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.55
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.55
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.5
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.49
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.45
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.44
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.38
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.37
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.36
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.27
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.25
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.24
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.15
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.15
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.12
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.03
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.0
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.98
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.98
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.96
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.91
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.86
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.83
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.82
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.79
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.61
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.55
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.54
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.51
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.39
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.3
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.17
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.16
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.15
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.14
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.14
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.12
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.11
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.95
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.93
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.88
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.86
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.84
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.75
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.73
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.67
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.67
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.64
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.54
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.43
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.42
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.38
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.35
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.21
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.14
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.93
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.91
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.8
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.78
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.72
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.66
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.65
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.62
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.61
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.43
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.14
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.12
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.94
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.7
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.41
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.09
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.04
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.81
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.8
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.35
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.0
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.64
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.89
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.05
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.0
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.63
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.32
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	87.29
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	87.1
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.04
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	86.11
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	86.04
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	83.35
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	82.7
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	82.51
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	82.39
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	82.24
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	82.22
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.09
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	81.35
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	81.26
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	81.11
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	80.94
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	80.67
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	80.32

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-37  Score=223.04  Aligned_cols=170  Identities=48%  Similarity=0.851  Sum_probs=159.6

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      +|++.+||+|+|++|+|||||+++|..+.+.+.+.++.+.++....+.+++..+++.+|||||++.+..++..+++.+|+
T Consensus         1 ~~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~   80 (171)
T d2ew1a1           1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA   80 (171)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccce
Confidence            47899999999999999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +++|+|++++.++..+..|+..+........|+++|+||+|+.+...+..++++.+++.++++++++||++|.|++++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHH
Confidence            99999999999999999999998877777899999999999988888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          162 KTAAKILQNI  171 (210)
Q Consensus       162 ~l~~~~~~~~  171 (210)
                      .|++.++...
T Consensus       161 ~l~~~l~~~~  170 (171)
T d2ew1a1         161 DLACRLISEA  170 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9998887653

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.7e-37  Score=223.33  Aligned_cols=168  Identities=43%  Similarity=0.809  Sum_probs=157.9

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      +|++.+||+|+|++|+|||||+++|.+..+.+.+.++.+.+.....+......+.+.+|||||++.+..++..+++.+|+
T Consensus         1 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~   80 (169)
T d3raba_           1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMG   80 (169)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCE
T ss_pred             CCCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            47899999999999999999999999999999999998989998889999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +|+|||++++.++..+..|+..+........|+++++||.|+.+...+..++++.+++.++++++++||++|.|++++|+
T Consensus        81 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  160 (169)
T d3raba_          81 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  160 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999999888777777899999999999988888889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028303          162 KTAAKILQ  169 (210)
Q Consensus       162 ~l~~~~~~  169 (210)
                      +|++.+.+
T Consensus       161 ~l~~~i~e  168 (169)
T d3raba_         161 RLVDVICE  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99998764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=220.13  Aligned_cols=173  Identities=60%  Similarity=1.002  Sum_probs=162.6

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      .|++.+||+|+|++|||||||+++|..+.+.+.+.++.+.+.....+..++....+.+||+||++.+..++..+++.+|+
T Consensus         1 ~~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (174)
T d2bmea1           1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   80 (174)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             CccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCE
Confidence            47899999999999999999999999999999999998888888888889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +|+|+|+++++++..+..|+..+......+.|+++|+||+|+........+++..++...+++++++||++|.|++++|+
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~  160 (174)
T d2bmea1          81 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  160 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            99999999999999999999999888778899999999999988888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 028303          162 KTAAKILQNIQEG  174 (210)
Q Consensus       162 ~l~~~~~~~~~~~  174 (210)
                      +|.+.+++++.++
T Consensus       161 ~l~~~i~~~~~~~  173 (174)
T d2bmea1         161 QCARKILNKIESG  173 (174)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999887654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=218.02  Aligned_cols=165  Identities=68%  Similarity=1.124  Sum_probs=156.4

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      |++.+||+|+|++|+|||||+++|.+..+...+.++.+.+.......+++..+.+.+||++|++.+..++..+++.+|++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            67899999999999999999999999999999999889999999899999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      ++|||+++.+++..+..|+..+........|+++++||.|+........++++.+++..+++++++||++|.|++++|+.
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998877788999999999999888888889999999999999999999999999999999


Q ss_pred             HHHHH
Q 028303          163 TAAKI  167 (210)
Q Consensus       163 l~~~~  167 (210)
                      |++.+
T Consensus       161 i~~~i  165 (166)
T d1z0fa1         161 AAKKI  165 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98876

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-36  Score=217.31  Aligned_cols=173  Identities=53%  Similarity=0.884  Sum_probs=158.6

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +++.+||+|+|++|||||||+++|.++.+...+.++.+.......+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            57899999999999999999999999999998888888888888899999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      |+|||++++.++..+..|+..+......++|+++|+||+|+.+......+....+...++.+++++||++|.|++++|+.
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            99999999999999999999998887788999999999999887777878888899999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 028303          163 TAAKILQNIQEGA  175 (210)
Q Consensus       163 l~~~~~~~~~~~~  175 (210)
                      |++.+.+..++++
T Consensus       161 l~~~i~~~~~~~q  173 (175)
T d2f9la1         161 ILTEIYRIVSQKQ  173 (175)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHhhhcc
Confidence            9999988777654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-37  Score=219.43  Aligned_cols=165  Identities=35%  Similarity=0.718  Sum_probs=148.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      +.+||+|+|++|||||||+++|.++.+.+.+.++.+..........++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            57999999999999999999999999999999999999999989899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      |||+++++|++++..|+..+........|+++++||.|+.+.+.++.++++.++++++++|+++||++|.|++++|+.|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999888776666789999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028303          165 AKILQ  169 (210)
Q Consensus       165 ~~~~~  169 (210)
                      +.+++
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.5e-36  Score=218.97  Aligned_cols=174  Identities=48%  Similarity=0.868  Sum_probs=162.3

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      +|++.+||+|+|++|||||||+++|+...+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            57899999999999999999999999999999999999999888889999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +|+|||+++++++..+..|+..+......+.|+++|+||.|+.+...+..+++..++...++.++++||++|.|++++|+
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            99999999999999999999988877778899999999999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 028303          162 KTAAKILQNIQEGA  175 (210)
Q Consensus       162 ~l~~~~~~~~~~~~  175 (210)
                      .|++.+.+......
T Consensus       162 ~l~~~i~~~~~~~~  175 (194)
T d2bcgy1         162 TMARQIKESMSQQN  175 (194)
T ss_dssp             HHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHhhhcc
Confidence            99998877655433

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-36  Score=216.05  Aligned_cols=167  Identities=34%  Similarity=0.559  Sum_probs=151.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+|+|++|||||||+++|+.+.+...+.++. .+.....+.+++..+.+.+||++|++.+...+..+++.+|++|
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence            567999999999999999999999999988888774 4555667889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+....+++..++..++++|+++||++|.|++++|+.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  162 (173)
T d2fn4a1          83 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ  162 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             eecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHH
Confidence            9999999999999999998886643 467899999999999888888889999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028303          163 TAAKILQNI  171 (210)
Q Consensus       163 l~~~~~~~~  171 (210)
                      |++.+.++.
T Consensus       163 l~~~i~k~~  171 (173)
T d2fn4a1         163 LVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999986654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-36  Score=215.21  Aligned_cols=170  Identities=82%  Similarity=1.282  Sum_probs=154.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      |.+||+|+|++|||||||+++|.+..+.+.+.++.+...........+..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            57899999999999999999999999988888888888888888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      |||++++.++.++..|+..+......++|+++|+||+|+...+....+++..++...+++|+++||++|.|++++|..|+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999999887778899999999999988888888999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 028303          165 AKILQNIQEG  174 (210)
Q Consensus       165 ~~~~~~~~~~  174 (210)
                      +.+.++.+++
T Consensus       162 ~~i~~~~~~~  171 (173)
T d2a5ja1         162 KEIYRKIQQG  171 (173)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcc
Confidence            9998877654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-36  Score=214.20  Aligned_cols=165  Identities=27%  Similarity=0.366  Sum_probs=134.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+|+|++|+|||||+++|.+..+... .++ ........+.+++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-CCe-eeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            7999999999999999999998766443 333 33444556788999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      |++++.+++++..|+..+..... ..+|+++|+||+|+.+.+.++..++++++..++++|+++||++|.|++++|+.|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            99999999999999998876643 67899999999999888888999999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 028303          166 KILQNIQE  173 (210)
Q Consensus       166 ~~~~~~~~  173 (210)
                      .+..+..+
T Consensus       160 ~i~~~~~~  167 (168)
T d2gjsa1         160 QIRLRRDS  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhC
Confidence            88776543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-36  Score=215.02  Aligned_cols=162  Identities=37%  Similarity=0.621  Sum_probs=152.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+|+|++|+|||||+++|.++.+...+.+|.+.+........++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999999999988888888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      ||++++.+++++..|+..+.... .++|+++|+||+|+.+.+.+..++++++++.++++|+++||++|.|++++|+.|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            99999999999999999887654 46899999999999888888999999999999999999999999999999999999


Q ss_pred             HHH
Q 028303          166 KIL  168 (210)
Q Consensus       166 ~~~  168 (210)
                      .++
T Consensus       161 ~~l  163 (164)
T d1z2aa1         161 KHL  163 (164)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-36  Score=218.19  Aligned_cols=171  Identities=48%  Similarity=0.937  Sum_probs=131.2

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      +|++.+||+|+|.++||||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            57899999999999999999999999999888888888999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +|+|||++++.++..+..|+..+......+.|+++|+||.|+........+++..++...+++|+++||++|.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999877778899999999999988888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028303          162 KTAAKILQNIQ  172 (210)
Q Consensus       162 ~l~~~~~~~~~  172 (210)
                      +|++.+..+..
T Consensus       162 ~l~~~i~~k~~  172 (173)
T d2fu5c1         162 TLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99998876654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=9.3e-36  Score=213.98  Aligned_cols=164  Identities=35%  Similarity=0.557  Sum_probs=147.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      +.+||+|+|++|+|||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            4689999999999999999999999999988888776654 457789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      |||++++.++..+..|+..+.... ..++|+++|+||.|+.+.+.++.++++.+++.++++|+++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999887654 3689999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028303          164 AAKILQ  169 (210)
Q Consensus       164 ~~~~~~  169 (210)
                      ++.+..
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            988753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=212.82  Aligned_cols=161  Identities=43%  Similarity=0.766  Sum_probs=152.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+|+|++|||||||+++|.+..+...+.++.+..........++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            58999999999999999999999999999999888888888888889999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      |++++.++.++..|+..+......+.|+++|+||.|+.+......+++.++++.++++|+++||++|.|++++|+.|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999888777789999999999998888888899999999999999999999999999999999886


Q ss_pred             H
Q 028303          167 I  167 (210)
Q Consensus       167 ~  167 (210)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-35  Score=211.93  Aligned_cols=164  Identities=34%  Similarity=0.570  Sum_probs=149.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      +.+||+++|++++|||||+++|.++.+.+.+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            579999999999999999999999999888888866544 4557789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCC-CHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIK  162 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~~~  162 (210)
                      |||++++.++.++..|+..+.... ..+.|+++++||+|+.+.+.++.++++++++.++++|+++||+++. ||+++|+.
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            999999999999999999887654 4679999999999999888899999999999999999999999875 99999999


Q ss_pred             HHHHHHH
Q 028303          163 TAAKILQ  169 (210)
Q Consensus       163 l~~~~~~  169 (210)
                      |++.+.+
T Consensus       162 l~~~i~~  168 (169)
T d1x1ra1         162 LVRVIRQ  168 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-35  Score=210.65  Aligned_cols=163  Identities=40%  Similarity=0.761  Sum_probs=154.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..+||+|+|.+|||||||+++|..+.+.+.+.++.+..........+.....+.+||++|++.+..++..+++.+|++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            35899999999999999999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      |||+++++++..+..|+..+........|+++|+||.|+.+.+.+..+++++++...+++|+++||++|.|++++|..|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999888887778899999999999988888999999999999999999999999999999999998


Q ss_pred             HHH
Q 028303          165 AKI  167 (210)
Q Consensus       165 ~~~  167 (210)
                      +++
T Consensus       163 ~~i  165 (167)
T d1z0ja1         163 RRI  165 (167)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=212.06  Aligned_cols=164  Identities=32%  Similarity=0.476  Sum_probs=150.2

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      .+.+||+|+|++|+|||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|.+.+..++..+++.+|++|
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            3568999999999999999999999999888888877765 455788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  162 (210)
                      +|||++++.++..+..|+..+.... ..++|+++|+||+|+...+.++.+++++++++++++|+++||++|.|++++|+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998887654 367999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028303          163 TAAKIL  168 (210)
Q Consensus       163 l~~~~~  168 (210)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988775

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-35  Score=210.23  Aligned_cols=164  Identities=35%  Similarity=0.584  Sum_probs=145.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+|+|++|||||||+++|..+.+...+.++.+ +.....+.+++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            48999999999999999999999998888888865 45556678899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      ||++++.++..+..|+..+.... ....|+++|+||+|+.+.+.+..+++.++++.++++|+++||++|.|++++|+.|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999998776554 36789999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028303          165 AKILQN  170 (210)
Q Consensus       165 ~~~~~~  170 (210)
                      +.+.+.
T Consensus       164 ~~i~k~  169 (171)
T d2erya1         164 RVIRKF  169 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988644

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=216.55  Aligned_cols=172  Identities=38%  Similarity=0.740  Sum_probs=153.3

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC----------EEEEEEEEecCCcchhhhh
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG----------RPIKLQIWDTAGQESFRSI   71 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~G~~~~~~~   71 (210)
                      +|++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++          ..+.+.+||++|++.+..+
T Consensus         1 ~~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~   80 (186)
T d2f7sa1           1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL   80 (186)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHH
Confidence            478899999999999999999999999999888888877777666655533          3468999999999999999


Q ss_pred             hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEec
Q 028303           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA  150 (210)
Q Consensus        72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  150 (210)
                      +..+++.+|++|+|||++++.+++.+..|+..+.... ....|+++|+||.|+.+.+.++.+++.+++++++++++++||
T Consensus        81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeC
Confidence            9999999999999999999999999999988775543 356899999999999888889999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhh
Q 028303          151 RTAQNVEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       151 ~~~~~i~~~~~~l~~~~~~~~~~  173 (210)
                      ++|.|++++|+.|++.+.++.++
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999877654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-35  Score=209.63  Aligned_cols=164  Identities=43%  Similarity=0.799  Sum_probs=154.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      -.+||+|+|++|+|||||+++|..+.+...+.++.+.......+......+.+.+||++|++.+..++..+++.+|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            35899999999999999999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      |||+++.+++.++..|+..+......+.|+++|+||+|+.+.+.++.++++.++..++++|+++||++|.|++++|+.|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999998887778899999999999988888999999999999999999999999999999999998


Q ss_pred             HHHH
Q 028303          165 AKIL  168 (210)
Q Consensus       165 ~~~~  168 (210)
                      +.+.
T Consensus       165 ~~i~  168 (170)
T d1r2qa_         165 KKLP  168 (170)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            7653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=208.38  Aligned_cols=166  Identities=46%  Similarity=0.858  Sum_probs=145.2

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      |+..+||+|+|++++|||||+++|..+.+... +.++.+.+.....+..++..+.+.+|||||++.+..++..+++.+|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            78899999999999999999999999987654 44556778888888899999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      +++|||++++.++..+..|+..+........|+++|+||.|+.+...+..+++..++..++++|+++||++|.|++++|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999888777777889999999999998889999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028303          162 KTAAKIL  168 (210)
Q Consensus       162 ~l~~~~~  168 (210)
                      +|++.+.
T Consensus       163 ~l~~~i~  169 (170)
T d2g6ba1         163 AIAKELK  169 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9998765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-35  Score=210.35  Aligned_cols=161  Identities=31%  Similarity=0.461  Sum_probs=145.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+|+|++|+|||||+++|+++.+.+.+.+|.+..+. ....+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccc-cceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            589999999999999999999999998888888775554 4467899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      ||+++++++.++..|+..+.....  .++|+++|+||+|+.+.+.+..++++++++.++++|+++||++|.|++++|+.|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999988765433  678999999999998888889999999999999999999999999999999998


Q ss_pred             HHHH
Q 028303          164 AAKI  167 (210)
Q Consensus       164 ~~~~  167 (210)
                      ++.+
T Consensus       161 ~~~~  164 (171)
T d2erxa1         161 LNLE  164 (171)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            8754

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=207.14  Aligned_cols=164  Identities=37%  Similarity=0.516  Sum_probs=145.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+|+|++|+|||||+++|.++.+.+.+.+|.+..+... ...++..+.+.+||++|++.+. ....+++.+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            48999999999999999999999999999999988776554 5678899999999999998764 566788999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCC-CHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKT  163 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~~~l  163 (210)
                      ||++++.++..+..|+........ .+.|+++|+||+|+.+.+.++.+++++++++++++|+++||++|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            999999999999998776655433 679999999999998878899999999999999999999999998 599999999


Q ss_pred             HHHHHHHH
Q 028303          164 AAKILQNI  171 (210)
Q Consensus       164 ~~~~~~~~  171 (210)
                      ++.+.++.
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99887653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=207.51  Aligned_cols=162  Identities=33%  Similarity=0.554  Sum_probs=147.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+|+|++|||||||+++|+++.+.+.+.++.+. .......+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-eeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            589999999999999999999999998888888664 4555678899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      ||++++.++.++..|+..+..... .++|+++|+||+|+.+.+.+..+++..+++.++++|+++||++|.|++++|+.|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~  161 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHH
Confidence            999999999999999988876543 6789999999999988888888999999999999999999999999999999998


Q ss_pred             HHHH
Q 028303          165 AKIL  168 (210)
Q Consensus       165 ~~~~  168 (210)
                      +++.
T Consensus       162 ~~i~  165 (167)
T d1kaoa_         162 RQMN  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-34  Score=207.69  Aligned_cols=162  Identities=31%  Similarity=0.516  Sum_probs=143.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      ..||+|+|++|+|||||+++|..+.+.+.+.+|.+ ........+++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999999988888866 44455577899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEEecCC
Q 028303           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENG-LLFLEASART  152 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~sa~~  152 (210)
                      ||+++++|++++..|+.........++|+++|+||+|+.+            ...++.++++.+++..+ .+|+++||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999988877666665567899999999999964            24577889999999987 5799999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028303          153 AQNVEEAFIKTAAKIL  168 (210)
Q Consensus       153 ~~~i~~~~~~l~~~~~  168 (210)
                      |.|++++|+.+++.++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998876

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=210.86  Aligned_cols=164  Identities=27%  Similarity=0.472  Sum_probs=144.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+|+|++|+|||||+++|+.+.+.+.+.+|.+.. ....+...+..+.+.+||++|++.+..++..+++.+|+++
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~-~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~i   85 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   85 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCC-EEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeee-eeEEEeeCCceEEeecccccccchhhhhhhhcccccceee
Confidence            457999999999999999999999999988888887644 4555677888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEEec
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENG-LLFLEASA  150 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~sa  150 (210)
                      +|||+++++|++++..|+.........+.|+++|+||+|+.+            .+.++.+++.++++.++ +.|+++||
T Consensus        86 lv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SA  165 (185)
T d2atxa1          86 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA  165 (185)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred             eccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecC
Confidence            999999999999887766666555567899999999999864            45678899999999887 68999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 028303          151 RTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       151 ~~~~~i~~~~~~l~~~~~  168 (210)
                      ++|.|++++|+.++++++
T Consensus       166 k~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         166 LTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHc
Confidence            999999999999988874

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-34  Score=208.58  Aligned_cols=162  Identities=27%  Similarity=0.468  Sum_probs=143.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+|+|++|+|||||+++|..+.+...+.+|.+.. ......+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            6899999999999999999999999999988887754 445567888999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHc-CCeEEEEecCC
Q 028303           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKEN-GLLFLEASART  152 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~-~~~~~~~sa~~  152 (210)
                      ||+++++||+++..|+.........+.|+++|+||.|+.+            ...++.+++++++... +++|+++||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9999999999998876666666567899999999999853            3457889999999986 47899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028303          153 AQNVEEAFIKTAAKIL  168 (210)
Q Consensus       153 ~~~i~~~~~~l~~~~~  168 (210)
                      |.|++++|+.+++.++
T Consensus       162 ~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         162 QKGLKNVFDEAILAAL  177 (191)
T ss_dssp             CTTHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999887653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-34  Score=205.13  Aligned_cols=163  Identities=42%  Similarity=0.764  Sum_probs=151.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..+||+|+|++|+|||||+++|.++.+.+.+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            36899999999999999999999999999999999998888889999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC---CCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH---RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  161 (210)
                      |||++++.++.++..|+..+........|+++++||.|+.+   .+.+..++++++++..+++|+++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888777777899999999999854   467788999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028303          162 KTAAKI  167 (210)
Q Consensus       162 ~l~~~~  167 (210)
                      .|++.+
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            987653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-34  Score=204.18  Aligned_cols=162  Identities=37%  Similarity=0.592  Sum_probs=146.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+|+|++|+|||||+++|..+.+.+.+.++.+..+. ..+.+++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccc-eeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            589999999999999999999999999988888776554 4467888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCeEEEEecCCCCCHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      ||++++.+++++..|+..+.... ..++|+++|+||+|+........+++..++++ .+++|+++||++|.|++++|+.|
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l  161 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999999887654 46799999999999988888888999999887 46899999999999999999999


Q ss_pred             HHHHH
Q 028303          164 AAKIL  168 (210)
Q Consensus       164 ~~~~~  168 (210)
                      ++.+.
T Consensus       162 ~~~i~  166 (167)
T d1c1ya_         162 VRQIN  166 (167)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            98763

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.3e-34  Score=203.01  Aligned_cols=164  Identities=48%  Similarity=0.899  Sum_probs=145.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+|+|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999999999999999999899999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  165 (210)
                      ||++++.+++++..|+..+........|++++++|.|+.. .....++++.++..++++++++||++|.|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999998888888777889999999999854 456678899999999999999999999999999999999


Q ss_pred             HHHHH
Q 028303          166 KILQN  170 (210)
Q Consensus       166 ~~~~~  170 (210)
                      .+.++
T Consensus       161 ~i~~k  165 (166)
T d1g16a_         161 LIQEK  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            88764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-33  Score=199.60  Aligned_cols=161  Identities=35%  Similarity=0.616  Sum_probs=146.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+|+|+++||||||+++|+++.+...+.++.+..+... +...+..+.+.+||++|++.+...+..+++.++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            48999999999999999999999999888888877766655 56788899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      ||++++.+++.+..|+..+..... .++|+++|+||+|+.. +.+..++++++++.++++|+++||++|.|++++|+.|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHH
Confidence            999999999999999998877654 5789999999999864 45677899999999999999999999999999999999


Q ss_pred             HHHH
Q 028303          165 AKIL  168 (210)
Q Consensus       165 ~~~~  168 (210)
                      +.+.
T Consensus       161 ~~i~  164 (166)
T d1ctqa_         161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.6e-33  Score=205.05  Aligned_cols=177  Identities=38%  Similarity=0.642  Sum_probs=155.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+|+|.+|||||||+++|++..+...+.+|.+.+.....+...+..+.+.+||++|...+...+..++..+|++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            48999999999999999999999999999999999999998888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCeEEEEecCCCCCHHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~  160 (210)
                      +|.++..++..+..|+..+.....    .++|+++|+||+|+.+ ..+..++...++.. .+++++++||++|.|++++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999988766532    4689999999999866 44566677777654 57899999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccccCC
Q 028303          161 IKTAAKILQNIQEGALDAVNDSG  183 (210)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~  183 (210)
                      ++|++.++++..+.......+++
T Consensus       161 ~~l~~~i~~~~~~~~~~~~~~~~  183 (184)
T d1vg8a_         161 QTIARNALKQETEVELYNEFPEP  183 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHhccccccccCCCCCC
Confidence            99999999988776655555544

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-35  Score=209.40  Aligned_cols=161  Identities=31%  Similarity=0.596  Sum_probs=141.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      -.+||+|+|++|+|||||+++|.++.+...+.+|.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            46899999999999999999999999999999999989888888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  164 (210)
                      |||++++.+++++..|+..+.... .++|+++|+||+|+......  +++..++...+++|+++||++|.|++++|++|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999998887654 47999999999999765443  345677888899999999999999999999999


Q ss_pred             HHHH
Q 028303          165 AKIL  168 (210)
Q Consensus       165 ~~~~  168 (210)
                      +.++
T Consensus       159 ~~l~  162 (170)
T d1i2ma_         159 RKLI  162 (170)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8885

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-32  Score=198.89  Aligned_cols=166  Identities=37%  Similarity=0.689  Sum_probs=146.6

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      .++.+||+|+|+++||||||+++|..+.+.+.+.++.+..........++..+.+.+||++|.......+..++..+|++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            35678999999999999999999999999999999989998888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCeEEEEecCCCCCHH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVE  157 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~  157 (210)
                      ++++|.+++.+++.+..|+..+.....    .+.|+++|+||.|+.+ +.+..+++++++++. .++|+++||++|.|++
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~  161 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHH
Confidence            999999999999999999887765432    5689999999999865 567889999999876 4899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQ  169 (210)
Q Consensus       158 ~~~~~l~~~~~~  169 (210)
                      ++|+.|++.+++
T Consensus       162 e~f~~l~~~il~  173 (174)
T d1wmsa_         162 AAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999998863

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-33  Score=199.67  Aligned_cols=165  Identities=50%  Similarity=0.859  Sum_probs=151.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      ..+||+|+|++|+|||||+++|.++.+...+.++.+.......+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            56899999999999999999999999999999988888888888999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  163 (210)
                      |||++++.++..+..|+..+..... ...|+++++||.|... +.+..++++++++.++++++++||++|.|++++|++|
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l  164 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  164 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCccccccchhhhhhhcccccccceeeEEEeecccccc-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998866543 5689999999999754 5678889999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028303          164 AAKILQN  170 (210)
Q Consensus       164 ~~~~~~~  170 (210)
                      ++.+++.
T Consensus       165 ~~~l~~~  171 (177)
T d1x3sa1         165 VEKIIQT  171 (177)
T ss_dssp             HHHHHTS
T ss_pred             HHHHccC
Confidence            9888754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-33  Score=202.64  Aligned_cols=165  Identities=30%  Similarity=0.508  Sum_probs=143.6

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      +...+||+|+|++|+|||||+++|+.+.+...+.+|.+.. ....+..++..+.+.+||++|++.+...+..+++.+|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeec-eeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            4678999999999999999999999999999888887654 445577899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEe
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEAS  149 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s  149 (210)
                      ++|||++++++++++..|+.........++|+++|+||+|+.+.            ......++..++++++ ++|+++|
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            99999999999999987655555555568999999999997432            3456678888888876 7899999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 028303          150 ARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       150 a~~~~~i~~~~~~l~~~~~  168 (210)
                      |++|.|++++|+.|++.++
T Consensus       161 Ak~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCcCHHHHHHHHHHHHc
Confidence            9999999999999998874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-33  Score=200.88  Aligned_cols=165  Identities=27%  Similarity=0.381  Sum_probs=140.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCC---cchhhhhhHHhhcccc
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAG---QESFRSITRSYYRGAA   80 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G---~~~~~~~~~~~~~~~d   80 (210)
                      ..+||+|+|++|+|||||+++|.+..+.. ...++.+.+.....+.+++..+.+.+||+++   ++.+  ++..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            35899999999999999999999876543 3445566677777788999999999999875   4433  5667889999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303           81 GALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (210)
Q Consensus        81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  159 (210)
                      ++|+|||++++.++.++..|+..+.... ..++|+++|+||+|+.+.+.++.++++.++..++++|+++||++|.|++++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            9999999999999999999998886653 367999999999999888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028303          160 FIKTAAKILQNI  171 (210)
Q Consensus       160 ~~~l~~~~~~~~  171 (210)
                      |+.|++.+..+.
T Consensus       160 f~~l~~~i~~rr  171 (172)
T d2g3ya1         160 FEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcc
Confidence            999999886653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-32  Score=197.12  Aligned_cols=158  Identities=42%  Similarity=0.808  Sum_probs=144.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh-hhHHhhccccEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-ITRSYYRGAAGALL   84 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~   84 (210)
                      .+||+|+|++|+|||||+++|..+.+...+.++.+.........+......+.+||++|...+.. .+..+++.+|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            68999999999999999999999999999999988888888888999999999999999887765 56788999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC---CCCHHHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART---AQNVEEAF  160 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~~~  160 (210)
                      |||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.++.+++++++++++++|+++||++   ++||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence            999999999999999999887654 36899999999999988888999999999999999999999987   56999999


Q ss_pred             HHH
Q 028303          161 IKT  163 (210)
Q Consensus       161 ~~l  163 (210)
                      ++|
T Consensus       162 ~~l  164 (165)
T d1z06a1         162 MTL  164 (165)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            886

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-33  Score=200.06  Aligned_cols=166  Identities=36%  Similarity=0.665  Sum_probs=131.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      .+||+|+|++|||||||+++|.+..+.+.+.++.+.......... +.....+.+||++|++.+...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            589999999999999999999999998888877666665555544 3445678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCC-CCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHR-RAVSKEEGEQFAKENG-LLFLEASARTAQNVEE  158 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~  158 (210)
                      |||++++.++..+..|+..+.....    .++|+++++||+|+.+. +.++.+++++++..++ ++|+++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            9999999999999999988865432    47899999999999764 4467788999998875 7899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          159 AFIKTAAKILQNI  171 (210)
Q Consensus       159 ~~~~l~~~~~~~~  171 (210)
                      +|++|++.++++.
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999888764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.4e-33  Score=200.10  Aligned_cols=163  Identities=28%  Similarity=0.467  Sum_probs=143.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+|+|++|||||||+++|..+.+.+.+.++...... ..+.+++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeccc-ccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            589999999999999999999999998888888664444 4467888999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEEecCC
Q 028303           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENG-LLFLEASART  152 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~sa~~  152 (210)
                      ||+++++||+.+..|+.........+.|+++|+||.|+..            ...++.+++..++++.+ ..|+++||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999998877766555566899999999999853            45688899999999876 5799999999


Q ss_pred             CCC-HHHHHHHHHHHHHH
Q 028303          153 AQN-VEEAFIKTAAKILQ  169 (210)
Q Consensus       153 ~~~-i~~~~~~l~~~~~~  169 (210)
                      +.+ ++++|+.+++.+++
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            985 99999999998874

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.3e-30  Score=187.97  Aligned_cols=164  Identities=18%  Similarity=0.305  Sum_probs=136.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (210)
                      +.+||+|+|++++|||||+++|.+..+... .++.... ....+.+++..+.+.+|||+|+..+     .+++.+|++|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~-~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQ-YKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEE-EEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCcccee-EEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            469999999999999999999999988654 3443443 4566788999999999999998754     36788999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc---CCCCeEEEEEecCCCCC--CCCCCHHHHHHHHHH-cCCeEEEEecCCCCCHHH
Q 028303           85 VYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAH--RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEE  158 (210)
Q Consensus        85 V~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~  158 (210)
                      |||++++.|++++..|+..+....   ...+|+++|+||.|+..  .+.++.++++.++.. ++++|+++||++|.|+++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            999999999999999988876543   35689999999888743  456777888888665 568899999999999999


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 028303          159 AFIKTAAKILQNIQEGA  175 (210)
Q Consensus       159 ~~~~l~~~~~~~~~~~~  175 (210)
                      +|..|++.++....+.+
T Consensus       157 ~F~~l~~~i~~~~~~~~  173 (175)
T d2bmja1         157 VFQEVAQKVVTLRKQQQ  173 (175)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcc
Confidence            99999999988877653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=6.1e-30  Score=182.61  Aligned_cols=155  Identities=18%  Similarity=0.315  Sum_probs=127.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+++|++++|||||+++|....+.+.+.+|.+.+...  +..+  .+.+.+||+||++.+...+..++..+|++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eeee--eEEEEEeeccccccccccccccccccchhhcc
Confidence            5899999999999999999999999988888877665533  3334  47799999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVEEA  159 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~  159 (210)
                      ||+++..++.....|+..+.... ..++|+++|+||.|+.+..  ...+..+..     ...+++++++||++|.|++++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            99999999999988887765543 3689999999999986532  233333222     233567999999999999999


Q ss_pred             HHHHHHH
Q 028303          160 FIKTAAK  166 (210)
Q Consensus       160 ~~~l~~~  166 (210)
                      |++|++.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.96  E-value=9.3e-30  Score=181.74  Aligned_cols=157  Identities=21%  Similarity=0.323  Sum_probs=122.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+++|++|||||||+++|.+..+. ...+|.+...  ..+..  ..+.+.+||+||++.+...+..+++.++++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KTLEH--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEE--EEEEE--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeee--eeccc--cccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            589999999999999999999987653 3444544333  22333  347789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHh-hcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHH
Q 028303           86 YDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEA  159 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~  159 (210)
                      ||+++..++.....++..... ....+.|+++|+||.|+.+...  .++......     ...++++++||++|+|+.++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC--HHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            999999998888777665543 3336799999999999975333  333333221     22456899999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          160 FIKTAAKILQ  169 (210)
Q Consensus       160 ~~~l~~~~~~  169 (210)
                      |++|++++.+
T Consensus       155 ~~~l~~~i~~  164 (165)
T d1ksha_         155 IDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999988764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.96  E-value=1.9e-29  Score=181.92  Aligned_cols=157  Identities=22%  Similarity=0.326  Sum_probs=122.1

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      .+..+||+++|++|||||||+++|.+..+.... ++.+.  ....+...  .+.+.+||++|++.+...+..+++.+|++
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~--~~~~i~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGF--NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTE--EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeee--eEEEeccC--CeeEeEeeccccccchhHHHHHhhcccee
Confidence            356799999999999999999999988764332 22222  22333333  46789999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEecCCCCCH
Q 028303           83 LLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNV  156 (210)
Q Consensus        83 i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i  156 (210)
                      ++|||+++..++..+..|+..+..... .++|+++++||+|+.+..  ...+..+..     ....++++++||++|+|+
T Consensus        88 i~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv  165 (176)
T d1fzqa_          88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (176)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc--cHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCH
Confidence            999999999999999888777654433 678999999999997533  223333222     223467999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          157 EEAFIKTAAK  166 (210)
Q Consensus       157 ~~~~~~l~~~  166 (210)
                      +++|++|++.
T Consensus       166 ~e~~~~l~~~  175 (176)
T d1fzqa_         166 QDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=1.3e-29  Score=183.78  Aligned_cols=163  Identities=23%  Similarity=0.334  Sum_probs=122.8

Q ss_pred             CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (210)
                      ...+.+||+++|++|||||||+++|.+..+.. ..+|.+....  .....  .+.+.+||+||++.+...+..++..+|+
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVE--TLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEE--EEEET--TEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEE--EEeeC--CEEEEEEecccccccchhHHhhhcccee
Confidence            34678999999999999999999998776543 2334343332  22333  4678999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEecCCCCC
Q 028303           82 ALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQN  155 (210)
Q Consensus        82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~  155 (210)
                      +++|+|++++.++.....|+..+.... ..+.|+++++||+|+.+  ..+.+++.+..     ...+++++++||++|+|
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT--CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc--ccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            999999999999998888876654433 36799999999999864  23344443322     23356799999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 028303          156 VEEAFIKTAAKILQNI  171 (210)
Q Consensus       156 i~~~~~~l~~~~~~~~  171 (210)
                      ++++|++|++.+.+++
T Consensus       166 v~e~~~~l~~~i~~~~  181 (182)
T d1moza_         166 ITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999887653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=181.58  Aligned_cols=157  Identities=19%  Similarity=0.358  Sum_probs=120.9

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      ...+||+++|+++||||||+++|.+..+... .+|.+...  .  ......+.+.+||+||++.+...+..+++.+|+++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~~--~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV--E--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEEE--E--EEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeeeE--E--EeeccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            3569999999999999999999997765332 22323322  2  22233467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHH-----HHHcCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQF-----AKENGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~i~  157 (210)
                      +|+|+++..++..+..|+...... .....|+++++||+|+.+.  ....++...     +...++.++++||++|+|++
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            999999999999998887766543 3367999999999999653  233333332     22235568999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          158 EAFIKTAAKI  167 (210)
Q Consensus       158 ~~~~~l~~~~  167 (210)
                      ++|++|.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=4.9e-27  Score=166.09  Aligned_cols=154  Identities=18%  Similarity=0.287  Sum_probs=122.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~   86 (210)
                      +||+|+|++|||||||+++|.++.+...+.......     ...+...+.+.+||++|...+...+..+++.++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE-----EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEE-----EEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            589999999999999999999988766544432221     233455678999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHH-----HHHHcCCeEEEEecCCCCCHHHHH
Q 028303           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQ-----FAKENGLLFLEASARTAQNVEEAF  160 (210)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~sa~~~~~i~~~~  160 (210)
                      |..++.++..+..|+..+..... ...|+++++||.|+.+..  ...++..     ++...+++++++||++|+|++++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc--cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            99999999998888777755433 678999999999986533  2233222     333346779999999999999999


Q ss_pred             HHHHHHH
Q 028303          161 IKTAAKI  167 (210)
Q Consensus       161 ~~l~~~~  167 (210)
                      ++|.+++
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.92  E-value=1.3e-24  Score=156.14  Aligned_cols=157  Identities=24%  Similarity=0.326  Sum_probs=116.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      .+.+||+|+|.+|||||||+++|.+..+....... +.  ........  ...+.+||+++.+.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~-~~--~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI-GS--NVEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCS-CS--SCEEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccccc-ce--eEEEEeec--ceEEEEeccccccccccchhhhhccceeee
Confidence            45699999999999999999999998775432222 21  11222233  367889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  157 (210)
                      +|+|.++..++.....++....... ....|+++|+||.|+....  ...++.+...     ..+++++++||++|+|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC--cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            9999999998888776655554333 3689999999999986533  2344444332     234679999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          158 EAFIKTAAKI  167 (210)
Q Consensus       158 ~~~~~l~~~~  167 (210)
                      ++|++|.+.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.92  E-value=8.1e-25  Score=155.68  Aligned_cols=156  Identities=22%  Similarity=0.324  Sum_probs=119.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+++|++|||||||+++|+++.+.... ++.+...  .....+  .+.+.+||.+|.+.........+...++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccee-cccceee--eeeccC--ceEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            489999999999999999999999876533 3323222  223333  45788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHH-hhcCCCCeEEEEEecCCCCCCCCCCHHHHH-----HHHHHcCCeEEEEecCCCCCHHHH
Q 028303           86 YDITRRETFNHLSSWLEDAR-QHANPNMSIMLVGNKCDLAHRRAVSKEEGE-----QFAKENGLLFLEASARTAQNVEEA  159 (210)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~sa~~~~~i~~~  159 (210)
                      +|+.+..++.....++.... .......|+++++||.|+.+...  ..+..     .++....++++++||++|.|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc--HHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            99998888777776554443 33346789999999999975332  22222     233445678999999999999999


Q ss_pred             HHHHHHHHH
Q 028303          160 FIKTAAKIL  168 (210)
Q Consensus       160 ~~~l~~~~~  168 (210)
                      |++|.+.+.
T Consensus       158 ~~~l~~~l~  166 (169)
T d1upta_         158 MEWLVETLK  166 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=9.1e-25  Score=159.19  Aligned_cols=156  Identities=17%  Similarity=0.207  Sum_probs=113.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+++|..|+|||||+++|....++..+..         +..++...+.+.+||++|++.+...+..+++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~---------~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV---------ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCSEE---------EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCccEE---------EEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            58999999999999999999997766443221         133344457789999999999999999999999999999


Q ss_pred             EECCChhhHH-----------HHHHHHHHHHhhcCCCCeEEEEEecCCCCCC---------------CCCCHHHHHHHHH
Q 028303           86 YDITRRETFN-----------HLSSWLEDARQHANPNMSIMLVGNKCDLAHR---------------RAVSKEEGEQFAK  139 (210)
Q Consensus        86 ~d~~~~~s~~-----------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---------------~~~~~~~~~~~~~  139 (210)
                      +|+++..++.           ....|...+........|+++++||.|+...               ......++.....
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            9998876542           2333444444444567899999999996211               1122222222111


Q ss_pred             ----H-------cCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028303          140 ----E-------NGLLFLEASARTAQNVEEAFIKTAAKILQN  170 (210)
Q Consensus       140 ----~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  170 (210)
                          .       ..+.++++||+++.||+++|+.+.+.++++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence                1       134577999999999999999998887764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.5e-23  Score=147.16  Aligned_cols=151  Identities=21%  Similarity=0.272  Sum_probs=117.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d   87 (210)
                      ||+++|++|+|||||+++|.+..+.. ..++.+...    .........+.+||++|...+...+..+...++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS----EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE----EEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE----EEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999988753 344434333    2333344567899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHH------------HcCCeEEEEecCCCC
Q 028303           88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK------------ENGLLFLEASARTAQ  154 (210)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~sa~~~~  154 (210)
                      .++..++.....++........ .+.|++++++|.|+..  .....+..+...            ...+.++++||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS--CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc--cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999988888777766655433 6789999999999865  333444433322            123468999999999


Q ss_pred             CHHHHHHHHHH
Q 028303          155 NVEEAFIKTAA  165 (210)
Q Consensus       155 ~i~~~~~~l~~  165 (210)
                      |++++|++|.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=8.8e-24  Score=152.24  Aligned_cols=155  Identities=21%  Similarity=0.147  Sum_probs=104.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCceeEEEEEEEEECCEEEEEEEEecCCcchh--------hhhhHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF--------RSITRSY   75 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~   75 (210)
                      +.-+|+|+|.+|+|||||+++|++....... .+..+...........+  ..+.+|||||....        ......+
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccc
Confidence            4557999999999999999999988654322 22222233333334444  46789999996432        2233456


Q ss_pred             hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHH-HHHHHHcC-CeEEEEecCCC
Q 028303           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG-EQFAKENG-LLFLEASARTA  153 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~-~~~~~~sa~~~  153 (210)
                      ++.+|++++|+|++++..... ..|...++. ...+.|+++|+||+|+....    ++. ..+....+ ..++++||+++
T Consensus        82 ~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~-~~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~iSA~~~  155 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPED-ELVARALKP-LVGKVPILLVGNKLDAAKYP----EEAMKAYHELLPEAEPRMLSALDE  155 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH-HHHHHHHGG-GTTTSCEEEEEECGGGCSSH----HHHHHHHHHTSTTSEEEECCTTCH
T ss_pred             cccccceeeeechhhhhcccc-cchhhheec-cccchhhhhhhcccccccCH----HHHHHHHHhhcccCceEEEecCCC
Confidence            789999999999988654332 333444433 33468999999999985432    333 33333333 56899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028303          154 QNVEEAFIKTAAKI  167 (210)
Q Consensus       154 ~~i~~~~~~l~~~~  167 (210)
                      .|++++++.|.+.+
T Consensus       156 ~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         156 RQVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999987654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.1e-24  Score=159.35  Aligned_cols=160  Identities=18%  Similarity=0.145  Sum_probs=122.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+|+|..|||||||+++|....+.  +.+|.+....    .+....+.+.+||++|++.+...+..+++.+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY----PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE----EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE----EEeccceeeeeccccccccccccccccccccceeeEe
Confidence            589999999999999999999988763  5677776542    3444567789999999999999999999999999999


Q ss_pred             EECCChh-----------hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC----------------CCCCHHHHHHHH
Q 028303           86 YDITRRE-----------TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR----------------RAVSKEEGEQFA  138 (210)
Q Consensus        86 ~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----------------~~~~~~~~~~~~  138 (210)
                      +|+++..           .++....|...+......+.|+++++||.|+.+.                ...+...+..+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9998753           3445566666666655578999999999997321                122333333332


Q ss_pred             HH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303          139 KE----------NGLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       139 ~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~  171 (210)
                      ..          ..+.++++||+++.|+.++|+.+.+.+++..
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            21          1344789999999999999999998887654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4.8e-24  Score=151.01  Aligned_cols=150  Identities=24%  Similarity=0.270  Sum_probs=106.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh--------hhhHHhhc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--------SITRSYYR   77 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~   77 (210)
                      +||+++|++|+|||||+++|++...... ..+..+.......+...+  ..+.+||+||.....        .....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            7999999999999999999998875432 222223333333344554  457799999953222        22445678


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (210)
Q Consensus        78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  157 (210)
                      .+|++++++|..+..++.....|...+... ..+.|+++|+||+|+.+.....       ....+.+++++||+++.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCHH
Confidence            899999999999887766666554444433 3578999999999985533211       11235679999999999999


Q ss_pred             HHHHHHHHH
Q 028303          158 EAFIKTAAK  166 (210)
Q Consensus       158 ~~~~~l~~~  166 (210)
                      +++++|.+.
T Consensus       152 ~L~~~l~~~  160 (161)
T d2gj8a1         152 VLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.89  E-value=1.1e-22  Score=146.61  Aligned_cols=161  Identities=18%  Similarity=0.170  Sum_probs=105.5

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc-----e--eEEEEEEEEECCEEEEEEEEecCCcchhhhhhH
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-----G--VEFGARMVTIDGRPIKLQIWDTAGQESFRSITR   73 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   73 (210)
                      |+.. .++|+++|++++|||||+|+|++.........+.     +  .......+..+  ...+.++|++|+..+.....
T Consensus         1 ~~~k-~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~   77 (179)
T d1wb1a4           1 MDFK-NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVV   77 (179)
T ss_dssp             CCCE-EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHH
T ss_pred             CCCC-CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccC--Cccccccccccccccccchh
Confidence            4444 4799999999999999999999654322211111     1  11111112223  34678999999999999899


Q ss_pred             HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHHH----cCCeEEE
Q 028303           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKE----NGLLFLE  147 (210)
Q Consensus        74 ~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~----~~~~~~~  147 (210)
                      ..+..+|++++|+|+.++...... ..+..+..   .++|+++|+||+|+.+.....  .+..+.+...    ...++++
T Consensus        78 ~~l~~~d~~ilv~d~~~g~~~~~~-~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  153 (179)
T d1wb1a4          78 SAADIIDLALIVVDAKEGPKTQTG-EHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP  153 (179)
T ss_dssp             HHTTSCCEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred             hhhhhccccccccccccccchhhh-hhhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEE
Confidence            999999999999999986543332 22223322   378999999999986532211  1111222222    2467999


Q ss_pred             EecCCCCCHHHHHHHHHHHHH
Q 028303          148 ASARTAQNVEEAFIKTAAKIL  168 (210)
Q Consensus       148 ~sa~~~~~i~~~~~~l~~~~~  168 (210)
                      +||++|+|++++++.|.+.+.
T Consensus       154 iSA~~g~gi~eL~~~I~~~l~  174 (179)
T d1wb1a4         154 ISAKTGFGVDELKNLIITTLN  174 (179)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEccCCcCHHHHHHHHHhcCC
Confidence            999999999999999887664

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=3.2e-23  Score=149.46  Aligned_cols=157  Identities=17%  Similarity=0.062  Sum_probs=105.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch-------hhhhhHHhhcccc
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------FRSITRSYYRGAA   80 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d   80 (210)
                      .|+++|.+|+|||||+|+|++...........+........ .......+.+|||||...       ........+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-eecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            58999999999999999999876544333333333333222 333344678999999432       1123345567899


Q ss_pred             EEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303           81 GALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (210)
Q Consensus        81 ~~i~V~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  158 (210)
                      ++++++|+....  .......|+...... ..+.|+++|+||+|+.+...  .++..+.+...+.+++++||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            999999987642  233333333322111 13579999999999865332  3445556666788999999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          159 AFIKTAAKIL  168 (210)
Q Consensus       159 ~~~~l~~~~~  168 (210)
                      +++.|.+.+.
T Consensus       159 L~~~i~~~l~  168 (180)
T d1udxa2         159 LKEALHALVR  168 (180)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9998877764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=3.1e-23  Score=148.35  Aligned_cols=155  Identities=21%  Similarity=0.191  Sum_probs=97.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCceeEEEEEEEEECCEEEEEEEEecCCcc---------hhhhhhHHhhc
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE---------SFRSITRSYYR   77 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~   77 (210)
                      +|+|+|++|+|||||+++|++....... .+..+......  .+......+.+||++|..         .+.......+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQD--TVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEE--EEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccc--cccccccccccccccceeeeeccccccccccccccccc
Confidence            6999999999999999999987653221 11112112222  233334567899999931         22234455678


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (210)
Q Consensus        78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  157 (210)
                      .+|++++++|..+...... ..++..+...   +.|+|+|+||+|+.++.  ..+...++.......++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            8999999999987654332 3344444443   68999999999985321  1122223333334567899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028303          158 EAFIKTAAKILQN  170 (210)
Q Consensus       158 ~~~~~l~~~~~~~  170 (210)
                      +++++|.+.+.+.
T Consensus       154 ~L~~~i~~~l~e~  166 (171)
T d1mkya1         154 TMLETIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCC
Confidence            9999988866543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.88  E-value=4.6e-22  Score=143.36  Aligned_cols=157  Identities=23%  Similarity=0.277  Sum_probs=112.4

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (210)
                      .+..||+++|++|||||||+++|.+..+.... ++.+.+.  ..+..++  ..+.+||+.+...+...+..+.+..++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccce--eEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            46789999999999999999999988775433 2322222  2234454  45679999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHh-hcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-----------------CCeE
Q 028303           84 LVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-----------------GLLF  145 (210)
Q Consensus        84 ~V~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~  145 (210)
                      +++|+++...+.....++..... ....+.|+++++||.|++.  .....++.+.....                 ++.+
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999999888777765544443 3336899999999999865  34445555444321                 2458


Q ss_pred             EEEecCCCCCHHHHHHHHHHHH
Q 028303          146 LEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       146 ~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      +++||++|+|++++|++|.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=9e-23  Score=149.22  Aligned_cols=159  Identities=22%  Similarity=0.263  Sum_probs=109.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V   85 (210)
                      .+||+++|++|||||||+++|.   +...+.+|.+...  ..+..  ....+.+||++|++.+...+..+++.+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~--~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEI--KNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEE--TTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEee--eeeeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999994   3455667777543  22333  456789999999999999999999999999999


Q ss_pred             EECCChhh----------HHHHHHHHHHHH-hhcCCCCeEEEEEecCCCCCC----------------CCCCHHHHHHHH
Q 028303           86 YDITRRET----------FNHLSSWLEDAR-QHANPNMSIMLVGNKCDLAHR----------------RAVSKEEGEQFA  138 (210)
Q Consensus        86 ~d~~~~~s----------~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~----------------~~~~~~~~~~~~  138 (210)
                      +|.++..+          +.....++..+. .....+.|+++++||.|+.++                .....+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            99987533          333334444432 233368999999999997321                112334444433


Q ss_pred             HH-----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303          139 KE-----------NGLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (210)
Q Consensus       139 ~~-----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~  171 (210)
                      ..           ..+.++++||+++.+|.++|+.+.+.+++..
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            32           1245678999999999999999988877654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=8.5e-23  Score=144.34  Aligned_cols=149  Identities=22%  Similarity=0.188  Sum_probs=101.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEecCCcch--------h-hhhhHHhh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------F-RSITRSYY   76 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~-~~~~~~~~   76 (210)
                      +||+++|.+|+|||||+|+|++...... ..+..+.......+...+  ..+.+|||||...        . .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6899999999999999999998764332 222222233333344554  4577999999321        1 11233346


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (210)
Q Consensus        77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  156 (210)
                      ..+|++++|+|++++........+. .+     ...++++++||.|+.+..  ..++..... ..+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~-~~-----~~~~~i~~~~k~d~~~~~--~~~~~~~~~-~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILE-RI-----KNKRYLVVINKVDVVEKI--NEEEIKNKL-GTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHH-HH-----TTSSEEEEEEECSSCCCC--CHHHHHHHH-TCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhh-hc-----ccccceeeeeeccccchh--hhHHHHHHh-CCCCcEEEEECCCCCCH
Confidence            7899999999999876644433222 11     256899999999997633  334433322 24578999999999999


Q ss_pred             HHHHHHHHHH
Q 028303          157 EEAFIKTAAK  166 (210)
Q Consensus       157 ~~~~~~l~~~  166 (210)
                      +++++.|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988663

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.2e-21  Score=141.73  Aligned_cols=160  Identities=22%  Similarity=0.119  Sum_probs=106.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcch------------hhh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES------------FRS   70 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------~~~   70 (210)
                      ...+||+|+|++|+|||||+|+|++..... ...+..+.......+.+++.  .+.++|+||...            ...
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhH
Confidence            346999999999999999999999876432 11222233333333455553  467889998532            223


Q ss_pred             hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-----CCeE
Q 028303           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-----GLLF  145 (210)
Q Consensus        71 ~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~  145 (210)
                      .....++.+|++++|+|+..+.... ...+...+...   +.|+|+|+||+|+.........+..+.+.+.     ..++
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~~---~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMERR---GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  159 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHT---TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhcCCEEEEeecccccchhh-HHHHHHHHHHc---CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeE
Confidence            4555678899999999998754322 22333333332   6899999999998665554555554444432     3579


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHH
Q 028303          146 LEASARTAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       146 ~~~sa~~~~~i~~~~~~l~~~~~~  169 (210)
                      +++||++|.|++++++.|.+.+.+
T Consensus       160 ~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         160 IFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999776544

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=1.6e-22  Score=150.93  Aligned_cols=162  Identities=21%  Similarity=0.193  Sum_probs=105.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEE----------------ECCEEEEEEEEecCCcchhhhh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT----------------IDGRPIKLQIWDTAGQESFRSI   71 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~D~~G~~~~~~~   71 (210)
                      .|+|+|++++|||||+++|++...........+.........                +......+.++||||++.|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            399999999999999999987532221111111111111111                1233446889999999999888


Q ss_pred             hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCH--------------------
Q 028303           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--------------------  131 (210)
Q Consensus        72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--------------------  131 (210)
                      ....+..+|++|+|+|+.++...... ..+..+...   ++|+|+++||+|+........                    
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~---~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQTQ-EALNILRMY---RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHHT---TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccceEEEEEecccCcccchh-HHHHHhhcC---CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            88888999999999999886443332 333333332   789999999999864322110                    


Q ss_pred             HHHHH----HHHH--------------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303          132 EEGEQ----FAKE--------------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       132 ~~~~~----~~~~--------------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~  173 (210)
                      ....+    +...              ..++++++||++|.|++++++.|.....+.+.+
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~  222 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE  222 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            00000    1110              014689999999999999999988877665554

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=5.5e-22  Score=143.18  Aligned_cols=150  Identities=19%  Similarity=0.177  Sum_probs=95.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc---------------hhhhhh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE---------------SFRSIT   72 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------------~~~~~~   72 (210)
                      .|+++|++|+|||||+|+|++........+..+.+  ...+...+    +.+|||||..               .+....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--cccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            68999999999999999999877644333322222  22233333    4689999942               111123


Q ss_pred             HHhhccccEEEEEEECCChhhHHHHH----------HHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028303           73 RSYYRGAAGALLVYDITRRETFNHLS----------SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG  142 (210)
Q Consensus        73 ~~~~~~~d~~i~V~d~~~~~s~~~~~----------~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  142 (210)
                      ...++.+|++++|+|+..........          .++..+..   .+.|+++|+||+|+.+...   .....+.....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQ---EVINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHH---HHHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHH---HHHHHHHHHhc
Confidence            34567899999999997653322211          12222222   3789999999999754322   11112222222


Q ss_pred             -------CeEEEEecCCCCCHHHHHHHHHHHHHH
Q 028303          143 -------LLFLEASARTAQNVEEAFIKTAAKILQ  169 (210)
Q Consensus       143 -------~~~~~~sa~~~~~i~~~~~~l~~~~~~  169 (210)
                             ..++++||++|.|++++++.|.+.+.+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                   238899999999999999999877654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.85  E-value=1.2e-20  Score=137.52  Aligned_cols=163  Identities=15%  Similarity=0.153  Sum_probs=108.6

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-----CCceeEEEEEEEE-------------------ECCEEEEEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-----LTIGVEFGARMVT-------------------IDGRPIKLQ   58 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----~~~~~~~~~~~~~-------------------~~~~~~~~~   58 (210)
                      .++.++|+++|+.++|||||+++|++........     .+....+......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            4678999999999999999999998743222111     1111111111111                   112245689


Q ss_pred             EEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHHHH
Q 028303           59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQ  136 (210)
Q Consensus        59 i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~  136 (210)
                      ++||||++.|.......+..+|++++|+|+.++.........+..+....  ..++++++||+|+.+....  ......+
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHH
Confidence            99999999999999998999999999999998643333444444444442  2357888999998653211  1222333


Q ss_pred             HHHHc---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          137 FAKEN---GLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       137 ~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      +....   .++++++||++|+|++++++.|.+.+
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            33332   36799999999999999888877643

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=7.4e-20  Score=134.45  Aligned_cols=117  Identities=19%  Similarity=0.280  Sum_probs=86.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh-hhhHHhhccccEEEEEE
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVY   86 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~V~   86 (210)
                      +|+++|++|+|||||+++|++..+.... ++.+.+.....+ .+...+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6899999999999999999998876543 444544443322 24446689999999998775 56788889999999999


Q ss_pred             ECCChhhH-HHHHHHHHHH-Hhh--cCCCCeEEEEEecCCCCCC
Q 028303           87 DITRRETF-NHLSSWLEDA-RQH--ANPNMSIMLVGNKCDLAHR  126 (210)
Q Consensus        87 d~~~~~s~-~~~~~~~~~~-~~~--~~~~~p~ivv~nK~D~~~~  126 (210)
                      |+++..+. .....++..+ ...  ...++|++|++||+|++..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            99987653 4444444333 222  2356899999999999753

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=3.5e-21  Score=143.13  Aligned_cols=162  Identities=16%  Similarity=0.184  Sum_probs=115.0

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (210)
                      |+..+||+++|+.|||||||+++|....+    .+|.|...  ..+.+++  +.+.+||++|++.+...|..++..++++
T Consensus         3 ~k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~i   74 (221)
T d1azta2           3 YRATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAI   74 (221)
T ss_dssp             HHHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEE
T ss_pred             chhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE--EEEEECc--EEEEEEecCccceeccchhhhcccccce
Confidence            56789999999999999999999976643    35556433  3344554  6789999999999999999999999999


Q ss_pred             EEEEECCChh----------hHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCCC----C------------------
Q 028303           83 LLVYDITRRE----------TFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRA----V------------------  129 (210)
Q Consensus        83 i~V~d~~~~~----------s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~------------------  129 (210)
                      ++|+|.++..          ...+.. .|...+....-.++|+++++||+|+.+++.    .                  
T Consensus        75 i~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~  154 (221)
T d1azta2          75 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDA  154 (221)
T ss_dssp             EEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTC
T ss_pred             EEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccc
Confidence            9999998642          222222 333333333336799999999999842110    0                  


Q ss_pred             --------CHHHHHHHHHH-------------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028303          130 --------SKEEGEQFAKE-------------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  172 (210)
Q Consensus       130 --------~~~~~~~~~~~-------------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~  172 (210)
                              ...++..+...             ..+..+++||.+..+++.+|..+.+.+++...
T Consensus       155 ~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~l  218 (221)
T d1azta2         155 TPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL  218 (221)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             cccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHHh
Confidence                    12233332221             12335689999999999999998888776654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=5.3e-21  Score=138.21  Aligned_cols=156  Identities=17%  Similarity=0.119  Sum_probs=98.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh----h---hhHHhhccc
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR----S---ITRSYYRGA   79 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~---~~~~~~~~~   79 (210)
                      ..|+|+|++|+|||||+|+|++........+..+.+.......+.+. ..+.+|||||.....    .   .....+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            36899999999999999999987654443333333333333334332 257799999953211    1   122334568


Q ss_pred             cEEEEEEECCChhhHHHH--HHHHH---HHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH--cCCeEEEEecCC
Q 028303           80 AGALLVYDITRRETFNHL--SSWLE---DARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE--NGLLFLEASART  152 (210)
Q Consensus        80 d~~i~V~d~~~~~s~~~~--~~~~~---~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~  152 (210)
                      +.++++++..........  ..+..   ........++|+++|+||+|+.+..    +....+...  .+.+++.+||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCC
Confidence            888888877654322111  11111   1111222468999999999986522    223333333  367899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028303          153 AQNVEEAFIKTAAKI  167 (210)
Q Consensus       153 ~~~i~~~~~~l~~~~  167 (210)
                      |.|++++++.|.+.+
T Consensus       157 g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         157 REGLRELLFEVANQL  171 (185)
T ss_dssp             SSTTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999887765

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=1.5e-19  Score=132.61  Aligned_cols=161  Identities=16%  Similarity=0.147  Sum_probs=103.1

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-----CCCceeEEEEEEEEE------------------------CCEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----DLTIGVEFGARMVTI------------------------DGRP   54 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~------------------------~~~~   54 (210)
                      .+.++|+++|+.++|||||+++|++.......     ..+.........+..                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            45689999999999999999999864221110     000000000111111                        1123


Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC--HH
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KE  132 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~  132 (210)
                      ..+.++|+||+..|.......+..+|++|+|+|+.++......+..+..+....  ..|+||++||+|+.+.....  ..
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~~  163 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYR  163 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHHH
Confidence            468899999999999988888999999999999988632223333334333331  24888999999996532211  11


Q ss_pred             HHHHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHH
Q 028303          133 EGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       133 ~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~  166 (210)
                      +...+....   .++++++||++|.|++++++.|...
T Consensus       164 ~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         164 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            222222222   4679999999999999998887654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=2.5e-19  Score=130.36  Aligned_cols=154  Identities=13%  Similarity=0.147  Sum_probs=91.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc----------hhh---hhh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----------SFR---SIT   72 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~---~~~   72 (210)
                      ..+|+|+|++|+|||||+|+|++...........+.+..........   .+.+.|++|..          ...   ...
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhh
Confidence            35899999999999999999998654333232223333333233332   23355665521          111   122


Q ss_pred             HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH----cCCeEEEE
Q 028303           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----NGLLFLEA  148 (210)
Q Consensus        73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~  148 (210)
                      ......+|++++|+|+.++... ....+++.+...   ++|+++|+||+|+....... +....+...    ...+++++
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~---~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  174 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY---GIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT---TCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEEEEC
T ss_pred             hccccchhhhhhhhhccccccc-cccccccccccc---cCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCEEEE
Confidence            2344567999999999876432 223444444443   68999999999985433221 112222222    34679999


Q ss_pred             ecCCCCCHHHHHHHHHHHH
Q 028303          149 SARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       149 sa~~~~~i~~~~~~l~~~~  167 (210)
                      ||+++.|++++++.|.+.+
T Consensus       175 SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         175 SSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998775

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.82  E-value=2e-20  Score=136.06  Aligned_cols=156  Identities=18%  Similarity=0.112  Sum_probs=105.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC----------------CCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK----------------RFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF   68 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   68 (210)
                      +.++|+++|+.++|||||+++|+..                ....+  ...+.+.......+......+.++||||+..|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~E--r~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEE--RARGITINAAHVEYSTAARHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEE--EETTEEEECEEEEEECSSCEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhh--cCCCccCCcceEEEEeceeeEEeecCcchHHH
Confidence            4689999999999999999999742                11111  12234444444445555567889999999999


Q ss_pred             hhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC---CHHHHHHHHHHcC---
Q 028303           69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV---SKEEGEQFAKENG---  142 (210)
Q Consensus        69 ~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~---  142 (210)
                      .......+..+|++++|+|+.++..-+ ....+..+....  ..|+|+++||+|+..+...   -..+++.++...+   
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~Q-T~~~~~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  156 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQIG--VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchh-HHHHHHHHHHhc--CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence            998989999999999999999865432 233344443332  3578999999998643221   1123444444433   


Q ss_pred             --CeEEEEecCCC----------CCHHHHHHHHHH
Q 028303          143 --LLFLEASARTA----------QNVEEAFIKTAA  165 (210)
Q Consensus       143 --~~~~~~sa~~~----------~~i~~~~~~l~~  165 (210)
                        ++++++|+++|          .++.++++.|.+
T Consensus       157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             ccCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence              67999999987          466766665544

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=7.6e-19  Score=128.58  Aligned_cols=143  Identities=17%  Similarity=0.136  Sum_probs=92.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC------CCCCC------CCC---CceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK------RFQPV------HDL---TIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~------~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      +.++|+++|++++|||||+++|+..      .....      ..+   ..+.+.......+.....++.|+||||+..|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            5689999999999999999999632      00000      000   00222222223333344567899999999999


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCC---CHHHHHHHHHHcC---
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV---SKEEGEQFAKENG---  142 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~---  142 (210)
                      ......+..+|++|+|+|+.++...+..+. +..+...   ++| +|+++||+|+.+....   -.++++.++...+   
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~~-~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  157 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTREH-ILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  157 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHHHH-HHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHHHH-HHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999998765544333 3333333   565 6778999998653211   1123444444432   


Q ss_pred             --CeEEEEecC
Q 028303          143 --LLFLEASAR  151 (210)
Q Consensus       143 --~~~~~~sa~  151 (210)
                        +++++.|+.
T Consensus       158 ~~i~~i~~sa~  168 (204)
T d2c78a3         158 DEVPVIRGSAL  168 (204)
T ss_dssp             TTSCEEECCHH
T ss_pred             ccceeeeeech
Confidence              457888875

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.76  E-value=4.8e-18  Score=125.60  Aligned_cols=148  Identities=20%  Similarity=0.179  Sum_probs=97.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCC--C-------------------------------CCCCCceeEEEEEEEEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--P-------------------------------VHDLTIGVEFGARMVTI   50 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~   50 (210)
                      +..++|+++|+.++|||||+.+|+...-.  .                               +.....+.+.....  +
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~--~   84 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY--F   84 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE--E
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE--E
Confidence            46799999999999999999999632100  0                               00011122222222  2


Q ss_pred             CCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-eEEEEEecCCCCCCCCC
Q 028303           51 DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-SIMLVGNKCDLAHRRAV  129 (210)
Q Consensus        51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~~  129 (210)
                      ......+.++|+||++.|.......+..+|++++|+|+.++..-+.. ..+..+...   ++ .+|+++||+|+.+..+.
T Consensus        85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~-e~~~~~~~~---gv~~iiv~vNK~D~~~~~~~  160 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHSYIASLL---GIKHIVVAINKMDLNGFDER  160 (222)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCEEEEEEECTTTTTSCHH
T ss_pred             eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH-HHHHHHHHc---CCCEEEEEEEccccccccce
Confidence            22345688999999999999999999999999999999986443332 223333332   54 47888999999764432


Q ss_pred             CHH----HHHHHHHHcC-----CeEEEEecCCCCCHH
Q 028303          130 SKE----EGEQFAKENG-----LLFLEASARTAQNVE  157 (210)
Q Consensus       130 ~~~----~~~~~~~~~~-----~~~~~~sa~~~~~i~  157 (210)
                      ..+    ++..++...+     ++++++||.+|+|+.
T Consensus       161 ~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         161 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            222    2334444443     357899999999884

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.8e-18  Score=123.82  Aligned_cols=157  Identities=20%  Similarity=0.124  Sum_probs=97.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEE-EEEEEEECCEEEEEEEEecCCcchhhh---------hhH
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF-GARMVTIDGRPIKLQIWDTAGQESFRS---------ITR   73 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~   73 (210)
                      .+--.|+|+|.+|+|||||+|+|++...........+... .......+..  .+..||++|......         ...
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAAS   80 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCc--eeEeecCCCceecchhhhhhhhhhccc
Confidence            3456799999999999999999998765433322222222 2222333433  355688887432221         122


Q ss_pred             HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CeEEEEecCC
Q 028303           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASART  152 (210)
Q Consensus        74 ~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~  152 (210)
                      .....+++++++.|..+....  ...+...+.   ....|.++++||.|..............+....+ .+++++||++
T Consensus        81 ~~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  155 (179)
T d1egaa1          81 SSIGDVELVIFVVEGTRWTPD--DEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  155 (179)
T ss_dssp             SCCCCEEEEEEEEETTCCCHH--HHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             cchhhcceeEEEEecCccchh--HHHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcC
Confidence            233457788888898764322  222222222   2367899999999986543322333344444444 5799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028303          153 AQNVEEAFIKTAAKI  167 (210)
Q Consensus       153 ~~~i~~~~~~l~~~~  167 (210)
                      |.|++++++.|.+++
T Consensus       156 g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         156 GLNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTTHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999998887654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=4.3e-17  Score=119.34  Aligned_cols=117  Identities=21%  Similarity=0.279  Sum_probs=80.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHh----hcccc
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSY----YRGAA   80 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~d   80 (210)
                      +..+|+|+|++|||||||+|+|++..+.+.    .+.....  ..+......+.+||+||++.+...+..+    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~~~~--~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQEPL--SAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCSSCE--EETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEecceE--EEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            356899999999999999999999876432    2222222  2234444567899999998766654444    44568


Q ss_pred             EEEEEEECCC-hhhHHHHHHHH----HHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303           81 GALLVYDITR-RETFNHLSSWL----EDARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        81 ~~i~V~d~~~-~~s~~~~~~~~----~~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                      .+++++|+.+ ..++.....|+    ..+......+.|+++|+||+|+.+..
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            8999999775 44444544443    33344455789999999999986543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.69  E-value=3.6e-16  Score=118.10  Aligned_cols=111  Identities=20%  Similarity=0.227  Sum_probs=80.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCC------------------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH------------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      +|+++|+.++|||||+.+|+...-....                  ....+.......+.+++  .+++++||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            6999999999999999999632111100                  01113333334455555  468899999999999


Q ss_pred             hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      ......++.+|++++|+|+.++........| ..+...   ++|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhhc---cccccccccccccc
Confidence            9999999999999999999987665554444 333333   78999999999964

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=1.9e-16  Score=119.96  Aligned_cols=114  Identities=17%  Similarity=0.178  Sum_probs=81.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCC------------------CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ------------------PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (210)
                      +.-+|+++|+.++|||||+.+++.....                  .+.....++......+.+++  .+++|+||||+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~   82 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHV   82 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchh
Confidence            3347999999999999999999632110                  01111222333333344554  568899999999


Q ss_pred             hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (210)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  124 (210)
                      .|.......++.+|+.|+|+|+.++......+-| .....   .++|.++++||+|..
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~---~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK---YKVPRIAFANKMDKT  136 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT---TTCCEEEEEECTTST
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH---cCCCEEEEEeccccc
Confidence            9999999999999999999999987654444444 33333   379999999999974

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=4.1e-17  Score=121.82  Aligned_cols=149  Identities=17%  Similarity=0.154  Sum_probs=98.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCC--CC-----------------------------CCCCCCceeEEEEEEEEECCE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKR--FQ-----------------------------PVHDLTIGVEFGARMVTIDGR   53 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   53 (210)
                      ..++|+++|+.++|||||+.+|+...  ..                             .+.....+.+.....+..+  
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--   82 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP--   82 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS--
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC--
Confidence            45899999999999999999986310  00                             0011122233333333344  


Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhH------HHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCC
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF------NHLSSWLEDARQHANPNMS-IMLVGNKCDLAHR  126 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~  126 (210)
                      ..+++|+||||+..|.......+..+|++|+|+|+.++...      ......+..+...   ++| +|+++||+|+.+.
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTT
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCCC
Confidence            46789999999999999999999999999999999875321      1233333333333   555 7889999998654


Q ss_pred             CCCCH----HHHHHHHHHcC-----CeEEEEecCCCCCHHH
Q 028303          127 RAVSK----EEGEQFAKENG-----LLFLEASARTAQNVEE  158 (210)
Q Consensus       127 ~~~~~----~~~~~~~~~~~-----~~~~~~sa~~~~~i~~  158 (210)
                      .....    ++...++...+     ++++++|+..+.|+.+
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            33222    23344444433     5689999999988644

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.67  E-value=8e-17  Score=120.79  Aligned_cols=155  Identities=18%  Similarity=0.141  Sum_probs=84.3

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCCceeEEEEEEEEECCEE
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMVTIDGRP   54 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   54 (210)
                      ...++|+++|+.++|||||+.+|+...-..                             ......+.+.......+....
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            356899999999999999999994311000                             000001111111111222233


Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHH------HHHHHHHHHHhhcCCCC-eEEEEEecCCCCCCC
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN------HLSSWLEDARQHANPNM-SIMLVGNKCDLAHRR  127 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~------~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~  127 (210)
                      ..+.+.|+||+..|..........+|++++|+|+.++..-.      .....+..+...   ++ ++++++||+|+....
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~~~  178 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPSVQ  178 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTTCS
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCccc
Confidence            56889999999999999999999999999999998853211      223333333332   44 478999999986422


Q ss_pred             --CCCHHHH----HHHHHHc-------CCeEEEEecCCCCCHHHHHH
Q 028303          128 --AVSKEEG----EQFAKEN-------GLLFLEASARTAQNVEEAFI  161 (210)
Q Consensus       128 --~~~~~~~----~~~~~~~-------~~~~~~~sa~~~~~i~~~~~  161 (210)
                        +...+++    ..+..+.       .++++++||++|+|+.++++
T Consensus       179 ~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         179 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence              1112222    2222222       25799999999999977543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=4.3e-16  Score=111.74  Aligned_cols=160  Identities=14%  Similarity=0.062  Sum_probs=83.3

Q ss_pred             CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc-------hhhhhhHH-
Q 028303            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-------SFRSITRS-   74 (210)
Q Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~~~-   74 (210)
                      .+..++|+++|.+|+|||||+|+|++.+.........+................+..++.++..       ........ 
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY   92 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhh
Confidence            4567999999999999999999999876654433332222222222222222222222222211       11111111 


Q ss_pred             --hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHHHc--CCeEEEE
Q 028303           75 --YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKEN--GLLFLEA  148 (210)
Q Consensus        75 --~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~--~~~~~~~  148 (210)
                        .....+.++++.+......... ..++..+..   ...++++++||.|+.+.....  .++..+.....  ..+++++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v  168 (188)
T d1puia_          93 LEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF  168 (188)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred             hhhhhheeEEEEeecccccchhHH-HHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence              2233446666666665433222 233333333   267899999999986532211  12222222222  3568999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 028303          149 SARTAQNVEEAFIKTAAK  166 (210)
Q Consensus       149 sa~~~~~i~~~~~~l~~~  166 (210)
                      ||++|.|++++++.|.+.
T Consensus       169 SA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         169 SSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             BTTTTBSHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHH
Confidence            999999999999987654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.65  E-value=2.2e-16  Score=117.05  Aligned_cols=150  Identities=19%  Similarity=0.222  Sum_probs=93.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCCceeEEEEEEEEECCE
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-------------------------------QPVHDLTIGVEFGARMVTIDGR   53 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   53 (210)
                      +.++|+++|+.++|||||+.+|+...-                               ..+...  +.+.......++..
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~r--g~ti~~~~~~~~~~   79 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER--GVTINLTFMRFETK   79 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECS
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcC--CccccceEEEEecC
Confidence            468999999999999999999853100                               001111  22222222333344


Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHH------HHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN------HLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                      ...+.++||||+..|.......+..+|++++|+|+.++....      .....+..+....  ..++|+++||+|+....
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~--~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG--LDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT--CTTCEEEEECGGGSSST
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhC--CCceEEEEEcccCCCcc
Confidence            567899999999999999999999999999999999864221      1222222222221  34688899999986422


Q ss_pred             --CCCHH----HHHHHHHHc-----CCeEEEEecCCCCCHHH
Q 028303          128 --AVSKE----EGEQFAKEN-----GLLFLEASARTAQNVEE  158 (210)
Q Consensus       128 --~~~~~----~~~~~~~~~-----~~~~~~~sa~~~~~i~~  158 (210)
                        ....+    ++..+....     .++++++||..|.|+.+
T Consensus       158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence              11112    233333333     35689999999998753

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=4.1e-15  Score=115.83  Aligned_cols=128  Identities=23%  Similarity=0.223  Sum_probs=85.9

Q ss_pred             ceE-EEEEEcCCCCCHHHHHHHHHhCC--C--------------CCCCCCCceeEEEEEEEEE--------------CCE
Q 028303            5 YLF-KYIIIGDTGVGKSCLLLQFTDKR--F--------------QPVHDLTIGVEFGARMVTI--------------DGR   53 (210)
Q Consensus         5 ~~~-~i~v~G~~~~GKSsli~~l~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------------~~~   53 (210)
                      ..+ +|+|+|+.++|||||+.+|+...  .              ..+.....+.......+.+              +++
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            445 59999999999999999996210  0              0011111122222222222              345


Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC-CCCCCHH
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-RRAVSKE  132 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~  132 (210)
                      .+.++++||||+..|.......++.+|++++|+|+.++.......-|.... ..   ++|+++++||+|... +.....+
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~-~~---~~p~i~viNKiDr~~~el~~~~~  170 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-GE---RIKPVVVINKVDRALLELQVSKE  170 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-HT---TCEEEEEEECHHHHHHTSCCCHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH-Hc---CCCeEEEEECcccccccHHhhHH
Confidence            678999999999999999999999999999999999986655555544433 22   789999999999742 2233444


Q ss_pred             HHHH
Q 028303          133 EGEQ  136 (210)
Q Consensus       133 ~~~~  136 (210)
                      ++.+
T Consensus       171 ~~~~  174 (341)
T d1n0ua2         171 DLYQ  174 (341)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.9e-14  Score=115.08  Aligned_cols=157  Identities=13%  Similarity=0.138  Sum_probs=89.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC---CceeEEEEEEEEECCEEEEEEEEecCCcchhhh-----hhHHhh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL---TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----ITRSYY   76 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~   76 (210)
                      ..++|+|+|.+|+|||||+|+|.+.........   ..+++.....+...+ ...+.+|||||-.....     +....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            358999999999999999999998654332221   111222222233322 22467999999543322     223345


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC-------CCCCCCHH----HHHH----HHHHc
Q 028303           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA-------HRRAVSKE----EGEQ----FAKEN  141 (210)
Q Consensus        77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~----~~~~----~~~~~  141 (210)
                      ..+|++|++.|..-...  + ......+...   +.|+++|.||+|..       .......+    ++++    .....
T Consensus       134 ~~~d~~l~~~~~~~~~~--d-~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKN--D-IDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCHH--H-HHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCHH--H-HHHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            67888888877543222  2 2233334333   78999999999962       11112222    2221    22222


Q ss_pred             C---CeEEEEecCC--CCCHHHHHHHHHHHHH
Q 028303          142 G---LLFLEASART--AQNVEEAFIKTAAKIL  168 (210)
Q Consensus       142 ~---~~~~~~sa~~--~~~i~~~~~~l~~~~~  168 (210)
                      +   -++|.+|..+  ..++.++.+.+.+.+.
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence            3   3478888765  3477777777665543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.51  E-value=6.6e-14  Score=105.51  Aligned_cols=125  Identities=15%  Similarity=0.097  Sum_probs=76.2

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEecCCcchhhh-------hhHH--
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-------ITRS--   74 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~--   74 (210)
                      ..++|+|+|.+|+|||||+|.|++......... ..+..........++  ..+.++||||......       ....  
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            468999999999999999999999876554332 223333334445565  4578999999532211       1111  


Q ss_pred             hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCH
Q 028303           75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSK  131 (210)
Q Consensus        75 ~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~  131 (210)
                      .....|+++||++++...-.......+..+....+  .-.++++|+||.|.........
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~  167 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  167 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcH
Confidence            22456899999988753211111222233332222  1257899999999876544444

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.37  E-value=1.5e-13  Score=102.30  Aligned_cols=110  Identities=14%  Similarity=0.027  Sum_probs=65.7

Q ss_pred             EEEEEecCCcchhhhhhHHh-----hccccEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303           56 KLQIWDTAGQESFRSITRSY-----YRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~~~-----~~~~d~~i~V~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                      .+.+.|+||+..+.......     ....+.+++++|+..   +...............  ....|.++++||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~--~~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH--HhCCCceeeeeccccccHH
Confidence            47889999988665533322     124568999999864   3322222111111111  1268999999999986422


Q ss_pred             CCCH--------HH---------------HHH---HHHH--cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303          128 AVSK--------EE---------------GEQ---FAKE--NGLLFLEASARTAQNVEEAFIKTAAKI  167 (210)
Q Consensus       128 ~~~~--------~~---------------~~~---~~~~--~~~~~~~~sa~~~~~i~~~~~~l~~~~  167 (210)
                      ....        ..               ...   ....  ..++++++||++|+|+++++..|.++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            1100        00               000   0111  247899999999999999999987763

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.26  E-value=1.8e-11  Score=93.06  Aligned_cols=83  Identities=22%  Similarity=0.181  Sum_probs=55.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEecCCcc----h
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQE----S   67 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~----~   67 (210)
                      +||+++|.|++|||||++++++........++.+.+.....+.++..               ...+.++|.||.-    .
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~   82 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCccc
Confidence            69999999999999999999988765444444454444444444322               1258899999942    1


Q ss_pred             hhh---hhHHhhccccEEEEEEECC
Q 028303           68 FRS---ITRSYYRGAAGALLVYDIT   89 (210)
Q Consensus        68 ~~~---~~~~~~~~~d~~i~V~d~~   89 (210)
                      -..   .....++++|+++.|+|+.
T Consensus        83 g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          83 GEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             CCCccHHHHHHHHhccceEEEeecc
Confidence            111   3445678999999999863

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=1.1e-11  Score=95.98  Aligned_cols=106  Identities=14%  Similarity=0.031  Sum_probs=60.4

Q ss_pred             EEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHH
Q 028303           57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEG  134 (210)
Q Consensus        57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~  134 (210)
                      +.+++|.|.....   ......+|.+++|.++..++..+.+..   .+...     +-++|+||+|.......  ...+.
T Consensus       149 ~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~---gi~e~-----aDi~VvNKaD~~~~~~~~~~~~~~  217 (327)
T d2p67a1         149 VVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GLMEV-----ADLIVINKDDGDNHTNVAIARHMY  217 (327)
T ss_dssp             EEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HHHHH-----CSEEEECCCCTTCHHHHHHHHHHH
T ss_pred             eEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhch---hhhcc-----ccEEEEEeecccchHHHHHHHHHH
Confidence            4566666532211   134567899999998766654433333   23322     33789999998642211  11122


Q ss_pred             HHHHH-------HcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303          135 EQFAK-------ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  173 (210)
Q Consensus       135 ~~~~~-------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~  173 (210)
                      +....       .+..+++.+||.+|+|++++.+.|.+.......+
T Consensus       218 ~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~~s  263 (327)
T d2p67a1         218 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTAS  263 (327)
T ss_dssp             HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHHHhC
Confidence            22221       1245799999999999999999987766544443

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.22  E-value=2.4e-11  Score=93.91  Aligned_cols=109  Identities=8%  Similarity=0.062  Sum_probs=65.1

Q ss_pred             EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028303           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG  134 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  134 (210)
                      +.+.|+.|.|...-..   ....-+|..++|.....++..+.+.   ..+..     .+-++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k---~gilE-----~aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIK---KGIFE-----LADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CC---TTHHH-----HCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhh---hhHhh-----hhheeeEeccccccchHHHHHHH
Confidence            4567788877533222   2345599999999998876543332   22222     23489999999865332221111


Q ss_pred             HHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhc
Q 028303          135 EQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  174 (210)
Q Consensus       135 ~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~  174 (210)
                      ..+...          +..+++.+|+.++.|++++.+.|.+........+
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~G  262 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATG  262 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHCC
Confidence            111111          3467999999999999999999987765544443

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=6.9e-10  Score=84.82  Aligned_cols=119  Identities=18%  Similarity=0.221  Sum_probs=71.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCceeEEEEEEEE-------E---CC----------------------
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVT-------I---DG----------------------   52 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~-------~---~~----------------------   52 (210)
                      ..+|+|+|..++|||||+|+|++.++.+... +++..........       +   .+                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            4689999999999999999999988644333 2221111111000       0   00                      


Q ss_pred             ---------E--------EEEEEEEecCCcc-------------hhhhhhHHhhcccc-EEEEEEECCChhhHHHHHHHH
Q 028303           53 ---------R--------PIKLQIWDTAGQE-------------SFRSITRSYYRGAA-GALLVYDITRRETFNHLSSWL  101 (210)
Q Consensus        53 ---------~--------~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~~i~V~d~~~~~s~~~~~~~~  101 (210)
                               .        ...+.++|+||..             ....+...|+...+ ++++|.++...........+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                     0        0136899999942             12234556666666 566677776655444444444


Q ss_pred             HHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303          102 EDARQHANPNMSIMLVGNKCDLAHRR  127 (210)
Q Consensus       102 ~~~~~~~~~~~p~ivv~nK~D~~~~~  127 (210)
                      ..+   .....++++|+||+|..++.
T Consensus       186 ~~~---~~~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         186 KEV---DPQGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHH---CTTCSSEEEEEECGGGSCTT
T ss_pred             HHh---CcCCCceeeEEeccccccch
Confidence            433   23356899999999986543

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=1.4e-10  Score=89.70  Aligned_cols=83  Identities=20%  Similarity=0.139  Sum_probs=45.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEE----------------------ECCEEEEEEEEecCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT----------------------IDGRPIKLQIWDTAG   64 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~i~D~~G   64 (210)
                      ++|+++|.|+||||||+|+|++........|+++.+.......                      .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999998865444444334332222110                      012335789999999


Q ss_pred             cchh----hhh---hHHhhccccEEEEEEECC
Q 028303           65 QESF----RSI---TRSYYRGAAGALLVYDIT   89 (210)
Q Consensus        65 ~~~~----~~~---~~~~~~~~d~~i~V~d~~   89 (210)
                      --..    ..+   ....++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            4221    112   223457899999999986

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.00  E-value=1.4e-09  Score=83.48  Aligned_cols=116  Identities=15%  Similarity=0.173  Sum_probs=67.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEE-------------------------------------
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT-------------------------------------   49 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------   49 (210)
                      .+|+|+|..++|||||+|.|++..+.+....+.+.......+.                                     
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  104 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR  104 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHHH
Confidence            5899999999999999999999887543332211111111000                                     


Q ss_pred             ----------------------ECCEEEEEEEEecCCcch-------------hhhhhHHhhccccEEEEEE-ECCChhh
Q 028303           50 ----------------------IDGRPIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVY-DITRRET   93 (210)
Q Consensus        50 ----------------------~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~V~-d~~~~~s   93 (210)
                                            .+. ...+.++|+||...             ...+...|+..++.+++++ +......
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~  183 (306)
T d1jwyb_         105 DTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (306)
T ss_dssp             HCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHhcCCCCcccccceEEEecCCC-CCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence                                  000 11467999999432             2246667888898765554 5443332


Q ss_pred             HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303           94 FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (210)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  126 (210)
                      ......+...+   .....++++|+||+|...+
T Consensus       184 ~~~~~~~~~~~---~~~~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         184 NSDALQLAKEV---DPEGKRTIGVITKLDLMDK  213 (306)
T ss_dssp             TCSHHHHHHHH---CSSCSSEEEEEECTTSSCS
T ss_pred             ccHHHHHHHHh---CcCCCeEEEEEeccccccc
Confidence            22233333333   2335689999999998643

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.00  E-value=9.8e-10  Score=83.94  Aligned_cols=85  Identities=20%  Similarity=0.203  Sum_probs=59.3

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCC--CCCCCCCceeEEEEEEEEECCE---------------EEEEEEEecCCcc-
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQE-   66 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~-   66 (210)
                      ..++|+++|.|+||||||++++++...  ...|+.| +.+.....+.++..               ...+.+.|.||.. 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypft-Ti~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYA-TIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSC-CCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCcc-CccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            458999999999999999999998754  2334333 55444444555431               2367899999832 


Q ss_pred             ---h---hhhhhHHhhccccEEEEEEECCC
Q 028303           67 ---S---FRSITRSYYRGAAGALLVYDITR   90 (210)
Q Consensus        67 ---~---~~~~~~~~~~~~d~~i~V~d~~~   90 (210)
                         .   ........++.+|++++|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence               1   12235556789999999999865

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.57  E-value=3.4e-08  Score=74.34  Aligned_cols=58  Identities=28%  Similarity=0.432  Sum_probs=36.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (210)
                      ...++|+|+|.|++|||||+|+|.+.........+ +.+.....+..+.   .+.++||||-
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~p-G~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRP-GITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcc-cccccceEEECCC---CeEEecCCCc
Confidence            35689999999999999999999998765443332 4444433343332   3679999994

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.53  E-value=7.7e-08  Score=72.33  Aligned_cols=116  Identities=11%  Similarity=0.080  Sum_probs=78.7

Q ss_pred             hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEec
Q 028303           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA  150 (210)
Q Consensus        71 ~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  150 (210)
                      .....++.+|++++|+|+.+|.+..+-  ++..+.    .+.|.|+|+||+|+.+...  .++..+.+...+...+.+|+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~~----~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~isa   79 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL----KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINS   79 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC----SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCT
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCCH--HHHHHH----cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceeec
Confidence            345678999999999999988664331  122221    2579999999999865321  23334445556678999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcccccccc---CCcccccCCCCCC
Q 028303          151 RTAQNVEEAFIKTAAKILQNIQEGALDAVND---SGIKVGYGRGQGP  194 (210)
Q Consensus       151 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  194 (210)
                      .++.+..++...+.+.+.+..+.........   ....+|-++.|+|
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKS  126 (273)
T d1puja_          80 VNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKS  126 (273)
T ss_dssp             TTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHH
T ss_pred             ccCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchh
Confidence            9999999888887776666555433222222   2678888887776

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.39  E-value=1.3e-06  Score=60.74  Aligned_cols=23  Identities=39%  Similarity=0.772  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +||+++|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999864

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.36  E-value=1.8e-07  Score=67.73  Aligned_cols=59  Identities=24%  Similarity=0.238  Sum_probs=35.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC------ceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT------IGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      ..+++|++|+|||||+|+|.+..........      .-++.....+.++++.   .++||||...+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            4689999999999999999876433221111      0112222234454333   389999975443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.27  E-value=1.1e-06  Score=63.47  Aligned_cols=84  Identities=18%  Similarity=0.164  Sum_probs=59.0

Q ss_pred             hhccccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH--cCCeEEEEecC
Q 028303           75 YYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE--NGLLFLEASAR  151 (210)
Q Consensus        75 ~~~~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~  151 (210)
                      ...+.|.+++|+++.+|+ +...+..++......   ++|.++|+||+|+.+...  .+....+...  ...+++.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEeccc
Confidence            346889999999998864 345555555555444   799999999999965321  2223333332  34688999999


Q ss_pred             CCCCHHHHHHHH
Q 028303          152 TAQNVEEAFIKT  163 (210)
Q Consensus       152 ~~~~i~~~~~~l  163 (210)
                      ++.+++++.+.|
T Consensus        82 ~~~g~~~L~~~l   93 (225)
T d1u0la2          82 TGMGIEELKEYL   93 (225)
T ss_dssp             TCTTHHHHHHHH
T ss_pred             cchhHhhHHHHh
Confidence            999999887765

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=1.3e-05  Score=57.91  Aligned_cols=145  Identities=12%  Similarity=0.088  Sum_probs=74.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC------CCCCceeEEEEE------EEEECC--------------------
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV------HDLTIGVEFGAR------MVTIDG--------------------   52 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~------~~~~~~--------------------   52 (210)
                      +..-++|.|..|||||||+++++.......      .......+-...      ...+.+                    
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~~~l~~~~~   81 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD   81 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEEecccchhhhhhhhcccccceEEecCCcceeccchhHHHHHHHHHH
Confidence            345578999999999999999987532110      000111111000      011111                    


Q ss_pred             ------EEEEEEEEecCCcchhhhhhHHh--------hccccEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCeEEEE
Q 028303           53 ------RPIKLQIWDTAGQESFRSITRSY--------YRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLV  117 (210)
Q Consensus        53 ------~~~~~~i~D~~G~~~~~~~~~~~--------~~~~d~~i~V~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv  117 (210)
                            ......++.+.|-.....+....        .-..+.+|.|+|+........ ...+..++...   +   +++
T Consensus        82 ~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~A---D---~iv  155 (222)
T d1nija1          82 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---D---RIL  155 (222)
T ss_dssp             HHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTC---S---EEE
T ss_pred             HHhhccCCcceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhC---C---ccc
Confidence                  01233566776654333332221        123578999999987643222 12223333221   2   788


Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHc--CCeEEEEecCCCCCHHHHH
Q 028303          118 GNKCDLAHRRAVSKEEGEQFAKEN--GLLFLEASARTAQNVEEAF  160 (210)
Q Consensus       118 ~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~  160 (210)
                      +||+|+..+    .+..++..+..  .+++++++ .....+..+|
T Consensus       156 lNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~-~g~v~~~~ll  195 (222)
T d1nija1         156 LTKTDVAGE----AEKLHERLARINARAPVYTVT-HGDIDLGLLF  195 (222)
T ss_dssp             EECTTTCSC----THHHHHHHHHHCSSSCEEECC-SSCCCGGGGS
T ss_pred             ccccccccH----HHHHHHHHHHHhCCCeEEEee-CCccCHHHhh
Confidence            999998653    23444544443  46677554 3334555443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.17  E-value=1.8e-07  Score=67.98  Aligned_cols=57  Identities=23%  Similarity=0.287  Sum_probs=32.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCC-------CCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHD-------LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (210)
                      ..+++|++|+|||||+|+|.+........       ..++++.. ..+..++..    ++||||...+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~-~l~~~~gg~----iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGL----VADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEE----EESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeE-EEEecCCCE----EEECCcccccc
Confidence            45799999999999999999764322111       11112111 123355532    78999986554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.15  E-value=3.1e-06  Score=60.74  Aligned_cols=91  Identities=21%  Similarity=0.195  Sum_probs=52.7

Q ss_pred             EEEEEEecCCcchhhhhh----HHh---hc-----cccEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEecC
Q 028303           55 IKLQIWDTAGQESFRSIT----RSY---YR-----GAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKC  121 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~----~~~---~~-----~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~  121 (210)
                      +.+.|+||+|...++...    ..+   ..     ..+-.++|+|++.... ...+...+..+      + +--+++||.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV------N-VTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS------C-CCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc------C-CceEEEecc
Confidence            357899999954433311    111   11     2467899999976432 23332322222      1 335889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303          122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (210)
Q Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  158 (210)
                      |....    .=.+...+...+.|+..++  +|+++++
T Consensus       167 De~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         167 DGTAK----GGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GGCSC----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cCCCc----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            96432    2345666777889987776  4666644

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.12  E-value=1.8e-06  Score=61.71  Aligned_cols=91  Identities=12%  Similarity=0.081  Sum_probs=52.9

Q ss_pred             EEEEEEecCCcchhhhh----hHHh---h-----ccccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecC
Q 028303           55 IKLQIWDTAGQESFRSI----TRSY---Y-----RGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKC  121 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~----~~~~---~-----~~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  121 (210)
                      ..+.|+||+|...+...    +..+   .     ...+-+++|+|++... ....+..++..+      + +--+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------G-LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------C-CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------C-CceEEEecc
Confidence            35789999996443331    1111   1     2457899999998654 333444444333      1 224789999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303          122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (210)
Q Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  158 (210)
                      |....--    .+...+...+.|+..++.  |+++++
T Consensus       162 Det~~~G----~~l~~~~~~~~Pi~~i~~--Gq~p~D  192 (207)
T d1okkd2         162 DGTAKGG----VLIPIVRTLKVPIKFVGV--GEGPDD  192 (207)
T ss_dssp             TSSCCCT----THHHHHHHHCCCEEEEEC--SSSTTC
T ss_pred             CCCCCcc----HHHHHHHHHCCCEEEEeC--CCChHh
Confidence            9643322    244566777888776663  444443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.12  E-value=2.7e-05  Score=55.61  Aligned_cols=91  Identities=16%  Similarity=0.175  Sum_probs=53.3

Q ss_pred             EEEEEEecCCcchhhh------hhHHh--hccccEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303           55 IKLQIWDTAGQESFRS------ITRSY--YRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~------~~~~~--~~~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  125 (210)
                      ..+.++||+|...+..      .....  .-..+-+++|+|+..... ...+...+    ...  + +--+++||.|.. 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~----~~~--~-~~~lI~TKlDet-  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFN----QAS--K-IGTIIITKMDGT-  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH----HHC--T-TEEEEEECTTSC-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhh----ccc--C-cceEEEecccCC-
Confidence            3578999999643321      11111  224578899999886543 22222222    111  2 224679999963 


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303          126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (210)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  158 (210)
                         ...=.+...+...++|+..++  +|+++++
T Consensus       167 ---~~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         167 ---AKGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ---SCHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ---CcccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence               334556677788899987776  4655544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.05  E-value=8.9e-07  Score=64.26  Aligned_cols=85  Identities=12%  Similarity=0.138  Sum_probs=60.4

Q ss_pred             hccccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHHcCCeEEEEecCC
Q 028303           76 YRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKENGLLFLEASART  152 (210)
Q Consensus        76 ~~~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~sa~~  152 (210)
                      ..+.|.+++|+++.+|+ +...+..++......   +++.++|+||+|+.+....  ..+...+.+...+++++.+|+++
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~   84 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD   84 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCC
Confidence            46889999999998764 455566655554443   7899999999999653221  11223344556789999999999


Q ss_pred             CCCHHHHHHHH
Q 028303          153 AQNVEEAFIKT  163 (210)
Q Consensus       153 ~~~i~~~~~~l  163 (210)
                      +.|++++...|
T Consensus        85 ~~gl~~L~~~l   95 (231)
T d1t9ha2          85 QDSLADIIPHF   95 (231)
T ss_dssp             HTTCTTTGGGG
T ss_pred             hhHHHHHHHhh
Confidence            99988876654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=4.6e-06  Score=59.70  Aligned_cols=91  Identities=16%  Similarity=0.132  Sum_probs=53.1

Q ss_pred             EEEEEEecCCcchhhhh----h---HHhhc-----cccEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEecC
Q 028303           55 IKLQIWDTAGQESFRSI----T---RSYYR-----GAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKC  121 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~----~---~~~~~-----~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~  121 (210)
                      +.+.|+||+|....+..    .   ....+     ..+-.++|+|+..... ...+..++..+      + +--+++||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV------G-LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS------C-CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc------C-CceEEEeec
Confidence            35789999995433321    1   11122     2468999999876532 33333333222      1 335789999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303          122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (210)
Q Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  158 (210)
                      |....    .=.+...+...++|+..++  +|+++++
T Consensus       165 De~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTAK----GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            96432    2335566777889987776  5666644

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.01  E-value=2.8e-06  Score=60.78  Aligned_cols=85  Identities=19%  Similarity=0.074  Sum_probs=49.7

Q ss_pred             EEEEEEecCCcchhhhh----hHH--hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303           55 IKLQIWDTAGQESFRSI----TRS--YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  128 (210)
                      ..+.++||+|....+..    +..  .....+-+++|.|+..+..-......+   ....  + +-=+++||.|...   
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f---~~~~--~-~~~~I~TKlDe~~---  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF---DEKV--G-VTGLVLTKLDGDA---  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHH---HHHT--C-CCEEEEECGGGCS---
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHH---HhhC--C-CCeeEEeecCccc---
Confidence            35789999995543331    111  123568899999998764322222211   1211  1 2247899999533   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEe
Q 028303          129 VSKEEGEQFAKENGLLFLEAS  149 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s  149 (210)
                       ..=.+..++...+.|+..++
T Consensus       164 -~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 -RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             -SCHHHHHHHHHHCCCEEEEC
T ss_pred             -cchHHHHHHHHHCCCEEEEe
Confidence             23446667777888876664

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.67  E-value=1.6e-05  Score=55.92  Aligned_cols=29  Identities=17%  Similarity=0.223  Sum_probs=25.1

Q ss_pred             CCCCceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |.......|+|+|+|||||||+.++|...
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            66777788999999999999999999753

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.62  E-value=1.2e-05  Score=55.62  Aligned_cols=40  Identities=10%  Similarity=0.189  Sum_probs=27.5

Q ss_pred             HHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhccc
Q 028303          134 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL  176 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~  176 (210)
                      ..+.+.+++.+++.+.   +.++.+.+..+.+.+.+.+.+...
T Consensus       148 ~~~~l~~~~~~~i~i~---~~~~~e~~~~i~~~I~~ll~~~~~  187 (192)
T d1lw7a2         148 LKKLLDKYKVPYIEIE---SPSYLDRYNQVKAVIEKVLNEEEI  187 (192)
T ss_dssp             HHHHHHGGGCCCEEEE---CSSHHHHHHHHHHHHHHHTSCCCC
T ss_pred             HHHHHHHCCCCEEEeC---CCCHHHHHHHHHHHHHHHHCcCcH
Confidence            4455666778877775   357888888888887766655543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.60  E-value=1.4e-05  Score=54.76  Aligned_cols=24  Identities=33%  Similarity=0.533  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|+|++||||||+.++|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999643

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.53  E-value=2.7e-05  Score=53.37  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=22.8

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...++|+|+|++||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            35689999999999999999999754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.7e-05  Score=53.19  Aligned_cols=21  Identities=24%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      -|+|+|++|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999985

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.47  E-value=3.1e-05  Score=53.65  Aligned_cols=23  Identities=17%  Similarity=0.380  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988643

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.41  E-value=3.2e-05  Score=54.17  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +++|+|+|++||||||+.+.|...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999998644

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.41  E-value=4.2e-05  Score=53.19  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999854

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.40  E-value=4.5e-05  Score=52.92  Aligned_cols=23  Identities=22%  Similarity=0.624  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.39  E-value=4.6e-05  Score=51.11  Aligned_cols=21  Identities=38%  Similarity=0.525  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |++.|++|||||||+++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998743

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.34  E-value=6e-05  Score=52.70  Aligned_cols=24  Identities=17%  Similarity=0.344  Sum_probs=21.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      +.++|+++|+|||||||+.+.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999999974

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=5.5e-05  Score=52.39  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ++|+|+|+|||||||..++|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.33  E-value=6e-05  Score=52.87  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=22.4

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..++|+|+|+|||||||+...|...
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            4589999999999999999999854

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=6.1e-05  Score=52.28  Aligned_cols=24  Identities=21%  Similarity=0.511  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|+|+|||||||+.+.|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.28  E-value=6.9e-05  Score=51.04  Aligned_cols=22  Identities=41%  Similarity=0.629  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -|+|.|++||||||+.++|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999999854

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.20  E-value=9.8e-05  Score=50.40  Aligned_cols=20  Identities=20%  Similarity=0.493  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028303            9 YIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~   28 (210)
                      |.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=8.7e-05  Score=49.98  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .|+|+|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00013  Score=50.94  Aligned_cols=23  Identities=17%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ++.|+|+|+|||||||...+|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999875

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00011  Score=50.47  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .|++.|++|+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999998743

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.14  E-value=0.00011  Score=51.93  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            36899999999999999998753

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.14  E-value=0.00037  Score=47.07  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -.-|++-|+-|||||||++.+...-
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc
Confidence            3458899999999999999998653

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00036  Score=51.77  Aligned_cols=62  Identities=21%  Similarity=0.112  Sum_probs=40.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-----CCCceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (210)
                      ++..-|.|+|+.++|||+|+|.|.+....-..     ..|.|+......+ ..+....+.++||.|..
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEeccccc
Confidence            35667899999999999999999987642211     1233433322211 13345568899999953

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00013  Score=53.04  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      +|+|+|++|||||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999999753

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00017  Score=49.76  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=20.6

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ...-|+++|.+||||||+++++..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999964

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.00011  Score=50.06  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .+|+++|++||||||+.+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999888644

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00021  Score=50.01  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=22.0

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...--|+|+|+|||||||+...|...
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            44566899999999999999999753

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00015  Score=52.31  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -++++|++|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999999865

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.04  E-value=0.00017  Score=52.52  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            68999999999999999998653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.03  E-value=0.00017  Score=50.83  Aligned_cols=22  Identities=18%  Similarity=0.304  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .-|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999974

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00018  Score=50.13  Aligned_cols=21  Identities=38%  Similarity=0.607  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+|+||+||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=6.9e-05  Score=52.06  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+|+||+|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999853

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.02  E-value=0.00019  Score=52.07  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      ++++|++|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5789999999999999999764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.01  E-value=0.00018  Score=52.77  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++|+|++|||||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999999865

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00019  Score=48.87  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      --++|+|++||||||+.+.|...
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34677999999999999999754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.00  E-value=0.00019  Score=48.83  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +|+++|++||||||+.+.|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988644

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.00  E-value=0.00022  Score=48.68  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +.|.++|.+||||||+.+.|...
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            67899999999999999888643

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.99  E-value=0.00018  Score=51.87  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            47899999999999999888653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0002  Score=52.44  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            68999999999999999998653

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.98  E-value=0.00021  Score=51.78  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999998764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.98  E-value=0.00021  Score=49.52  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+|+||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999999754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.98  E-value=0.00021  Score=49.13  Aligned_cols=20  Identities=25%  Similarity=0.341  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028303            9 YIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~   28 (210)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999998864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.97  E-value=0.00023  Score=48.58  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+|.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00022  Score=53.09  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++|+|++|||||||++.+.+..
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999998753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.91  E-value=0.00028  Score=51.72  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .--|+|.|+||+|||||++.+.+..
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3458999999999999999997653

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.90  E-value=0.00023  Score=51.69  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999999764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.90  E-value=0.00026  Score=51.32  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999998764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00019  Score=51.87  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ++++|++|||||||++.+.+.
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            689999999999999999974

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.87  E-value=0.0003  Score=47.86  Aligned_cols=21  Identities=24%  Similarity=0.363  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            667799999999999999864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.0003  Score=49.17  Aligned_cols=20  Identities=35%  Similarity=0.612  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028303            9 YIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~   28 (210)
                      |+|+||+|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.86  E-value=0.00029  Score=49.25  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -|+|+|+|||||||+..+|...
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999753

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.86  E-value=0.00018  Score=51.80  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=20.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      ++++|++|||||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            7899999999999999999764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.85  E-value=0.00036  Score=50.58  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++++|++|||||||++.+.+..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999999774

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00027  Score=51.22  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            36899999999999999998764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.84  E-value=0.00045  Score=47.92  Aligned_cols=24  Identities=25%  Similarity=0.135  Sum_probs=21.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ..+-|+|.|++|||||||.++|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999874

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.77  E-value=0.00037  Score=47.61  Aligned_cols=20  Identities=15%  Similarity=0.401  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028303            9 YIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~   28 (210)
                      |+++|++||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00038  Score=49.29  Aligned_cols=21  Identities=33%  Similarity=0.627  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+|+||+|||||||+++|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999999864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.76  E-value=0.00036  Score=51.16  Aligned_cols=22  Identities=41%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      ++++|++|||||||++.+.+..
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999999774

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00021  Score=49.64  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ..|.++|++||||||+.+.|..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.71  E-value=0.00023  Score=52.14  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +++|+|++|||||||++.+.+-
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHhc
Confidence            6899999999999999988764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.67  E-value=0.00046  Score=50.64  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999998753

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=0.00046  Score=49.71  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..+++.||||+|||++++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            46899999999999999998754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.65  E-value=0.00048  Score=49.66  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...+++.||||+||||+++.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999854

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.60  E-value=0.00026  Score=51.36  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999999764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.59  E-value=0.0006  Score=46.93  Aligned_cols=21  Identities=43%  Similarity=0.673  Sum_probs=17.6

Q ss_pred             EE-EEEcCCCCCHHHHHHHHHh
Q 028303            8 KY-IIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i-~v~G~~~~GKSsli~~l~~   28 (210)
                      || +|.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            55 4679999999999999864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00076  Score=47.70  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ++-|+|.|++|||||||.+.|...
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999988643

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.55  E-value=0.00069  Score=48.11  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .+.|++-||+||||||....|...
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            378899999999999999999743

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.55  E-value=0.00088  Score=50.75  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -+|+|.|++|||||||++.|....
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            468999999999999999999653

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.00082  Score=46.99  Aligned_cols=25  Identities=24%  Similarity=0.517  Sum_probs=21.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..-+++++|++|+|||+++..|...
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHH
Confidence            3457899999999999999888754

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.49  E-value=0.0011  Score=48.14  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +.-.|++.||+|+|||++++.+...
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            3456999999999999999999753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.45  E-value=0.0013  Score=45.50  Aligned_cols=25  Identities=24%  Similarity=0.195  Sum_probs=21.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +++-|+|.|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4678999999999999999988754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.44  E-value=0.00082  Score=50.62  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.|+++||||+|||.|.+.+...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            45899999999999999999854

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0011  Score=48.89  Aligned_cols=25  Identities=20%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..-+++++|++|+|||++++.|...
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHH
Confidence            3457899999999999999888754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.0011  Score=48.06  Aligned_cols=23  Identities=17%  Similarity=0.323  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.+++.||+|+||||+++.+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999865

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.36  E-value=0.0011  Score=47.35  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..+++.||+|+|||++++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999998754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.27  E-value=0.0012  Score=45.92  Aligned_cols=26  Identities=31%  Similarity=0.491  Sum_probs=22.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ...+-|+|-|..||||||+++.|...
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            45578999999999999999998754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.25  E-value=0.001  Score=47.05  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=21.6

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      +..+-|.+.|.+|||||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557799999999999999999874

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.24  E-value=0.0014  Score=47.61  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.++|.|++|+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0015  Score=46.07  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -|++.|||||||+|+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4678899999999999998743

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.15  E-value=0.0015  Score=47.47  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.|++.||+|+|||+|++.+...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35999999999999999999964

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.12  E-value=0.0015  Score=47.56  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            477899999999999999874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.002  Score=47.02  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.+++.||||+|||++++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            35899999999999999999854

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.00  E-value=0.0017  Score=51.30  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      -+|+++||+|||||-|+++|..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999964

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.98  E-value=0.002  Score=46.01  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..+++.||+|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            35899999999999999998754

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.98  E-value=0.002  Score=45.78  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..+++.||+|+||||+++.+...
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            45899999999999999988643

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.96  E-value=0.0012  Score=48.27  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +++.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999998754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0018  Score=46.65  Aligned_cols=23  Identities=17%  Similarity=0.385  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..+++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.86  E-value=0.003  Score=46.07  Aligned_cols=24  Identities=17%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .-.|++.||||+|||++++.+...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            346999999999999999999864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.83  E-value=0.0027  Score=44.37  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.0026  Score=45.23  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..+++.|++|+||||+++.+...
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            35899999999999999999864

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.61  E-value=0.003  Score=46.27  Aligned_cols=25  Identities=20%  Similarity=0.284  Sum_probs=21.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .-.|++.|++|+|||+|++.+...-
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3469999999999999999998653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.0046  Score=46.30  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=21.5

Q ss_pred             CceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            4 DYLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ..++-|+|.|++|||||||.+.|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            3468899999999999999888764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0057  Score=42.96  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      +-|+|.|..||||||+.+.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            458899999999999999887553

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.51  E-value=0.0072  Score=42.27  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +-|+|.|..||||||+.+.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            56899999999999999988643

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0046  Score=43.37  Aligned_cols=20  Identities=25%  Similarity=0.312  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028303            9 YIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~   28 (210)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998874

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.30  E-value=0.0068  Score=41.46  Aligned_cols=25  Identities=36%  Similarity=0.607  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      .-|++.|++|+||||+...|....+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999987643

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0061  Score=42.34  Aligned_cols=23  Identities=13%  Similarity=0.130  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -+.|.|++|+|||+|...|...-
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            36899999999999999887543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.16  E-value=0.0038  Score=48.32  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=18.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHH
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~   27 (210)
                      .-+++++|++|+|||+++..|.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHH
Confidence            3467999999999999986554

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.15  E-value=0.0087  Score=44.22  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=19.7

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHH
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~   27 (210)
                      ..+-|+|-|.+|||||||...|.
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHH
Confidence            45789999999999999987663

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.001  Score=46.01  Aligned_cols=18  Identities=33%  Similarity=0.610  Sum_probs=16.2

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q 028303           10 IIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus        10 ~v~G~~~~GKSsli~~l~   27 (210)
                      +|+|+.||||||++.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999985

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.14  E-value=0.0077  Score=41.20  Aligned_cols=24  Identities=29%  Similarity=0.538  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      .-|++.|++|+||||+...|....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999998654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.0074  Score=42.44  Aligned_cols=30  Identities=10%  Similarity=0.045  Sum_probs=22.0

Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHHHHhhcc
Q 028303          144 LFLEASARTAQNVEEAFIKTAAKILQNIQEGA  175 (210)
Q Consensus       144 ~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~  175 (210)
                      .++.+.+.  ..++++.+.|...+.+.+.+..
T Consensus       171 ~~~~IDa~--~~~e~V~~~I~~~v~~~l~~~~  200 (209)
T d1nn5a_         171 NWKMVDAS--KSIEAVHEDIRVLSEDAIATAT  200 (209)
T ss_dssp             CEEEEETT--SCHHHHHHHHHHHHHHHHHHGG
T ss_pred             CEEEEECC--CCHHHHHHHHHHHHHHHHHhcc
Confidence            46677654  4889998888888877777554

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.93  E-value=0.0073  Score=46.27  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.+++.||||+|||+|...+.+.
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998753

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.88  E-value=0.0067  Score=46.51  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .-+++++||+|||||-|.++|...
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHhh
Confidence            456999999999999999998743

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.86  E-value=0.0031  Score=47.66  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      +|+++|++|+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.84  E-value=0.0043  Score=46.05  Aligned_cols=18  Identities=33%  Similarity=0.575  Sum_probs=16.4

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q 028303           10 IIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus        10 ~v~G~~~~GKSsli~~l~   27 (210)
                      +++|+.|||||++++++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            789999999999999873

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.75  E-value=0.0079  Score=42.69  Aligned_cols=23  Identities=22%  Similarity=0.161  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -+.|.|++|+|||+|...+...-
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            36899999999999999987543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.73  E-value=0.012  Score=39.96  Aligned_cols=25  Identities=32%  Similarity=0.565  Sum_probs=21.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhCCC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDKRF   31 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~   31 (210)
                      .-|++.|++|+||||+...|....+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999999887643

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.67  E-value=0.01  Score=43.57  Aligned_cols=24  Identities=33%  Similarity=0.418  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..-|+|.|++|.|||||+..+...
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            346789999999999999998754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0052  Score=43.78  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.64  E-value=0.0095  Score=42.58  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      -++|.|+||+|||+|...+...-
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46899999999999998887543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.54  E-value=0.011  Score=44.43  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -.++++||+|+|||.|++.|...
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHhh
Confidence            36899999999999999998753

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.43  E-value=0.012  Score=44.07  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +++.|+||+|||.|++.|...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            345799999999999999754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.012  Score=41.93  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -|+|=|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999854

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.38  E-value=0.012  Score=41.84  Aligned_cols=22  Identities=32%  Similarity=0.599  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -++|.|+||+|||+|+..+...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999988755

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.35  E-value=0.0048  Score=45.64  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=16.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .-|+|.|.+||||||+.++|..
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHH
Confidence            3599999999999999998753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.21  E-value=0.013  Score=45.44  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+|.|++||||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999999865

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.14  E-value=0.012  Score=45.25  Aligned_cols=18  Identities=39%  Similarity=0.599  Sum_probs=16.4

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q 028303           10 IIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus        10 ~v~G~~~~GKSsli~~l~   27 (210)
                      +++|+.|+|||+++.++.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            688999999999999974

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.93  E-value=0.017  Score=40.93  Aligned_cols=22  Identities=23%  Similarity=0.167  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -++|.|++|+|||+|...+...
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999998754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.018  Score=40.99  Aligned_cols=22  Identities=18%  Similarity=0.111  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -++|.|++|+|||+|...+...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.80  E-value=0.023  Score=42.80  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=22.5

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4689999999999999999999854

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.78  E-value=0.019  Score=40.36  Aligned_cols=21  Identities=24%  Similarity=0.186  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |++-|..||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999988754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.02  Score=40.86  Aligned_cols=20  Identities=30%  Similarity=0.642  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028303            9 YIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~   28 (210)
                      +++.|++|+|||++++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78899999999999988754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.022  Score=39.83  Aligned_cols=22  Identities=18%  Similarity=0.381  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -+++.|++|+||||+++.+...
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHh
Confidence            3899999999999999987653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.65  E-value=0.015  Score=40.41  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      =.+++.||+++|||.|+..|..-
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            46899999999999999988744

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.62  E-value=0.022  Score=40.10  Aligned_cols=21  Identities=33%  Similarity=0.532  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +.+.|++|+|||-|++.+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.61  E-value=0.017  Score=43.49  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=22.8

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhCC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      ..++|.|=|.-|+||||+++.|...-
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHH
Confidence            35889999999999999999998653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.43  E-value=0.025  Score=40.24  Aligned_cols=21  Identities=14%  Similarity=0.044  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 028303            8 KYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (210)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999964

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.14  E-value=0.027  Score=42.36  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .++|.|=|+-|+||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            57899999999999999999974

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.12  E-value=0.028  Score=39.44  Aligned_cols=20  Identities=30%  Similarity=0.632  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q 028303            8 KYIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~   27 (210)
                      -+.|.|++|+|||+|...+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46889999999999987765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.94  E-value=0.031  Score=40.60  Aligned_cols=20  Identities=25%  Similarity=0.406  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028303            9 YIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~   28 (210)
                      ++|.|++|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999888763

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.029  Score=43.45  Aligned_cols=23  Identities=35%  Similarity=0.512  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHhC
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -+++|+|.+|+|||+++..++..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            35899999999999998777543

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.41  E-value=0.026  Score=41.43  Aligned_cols=17  Identities=18%  Similarity=0.454  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCHHHH-HHH
Q 028303            9 YIIIGDTGVGKSCL-LLQ   25 (210)
Q Consensus         9 i~v~G~~~~GKSsl-i~~   25 (210)
                      ++|+|.+|+||||. +++
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            68899999999975 444

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.09  E-value=0.034  Score=41.14  Aligned_cols=15  Identities=33%  Similarity=0.689  Sum_probs=13.0

Q ss_pred             EEEEcCCCCCHHHHH
Q 028303            9 YIIIGDTGVGKSCLL   23 (210)
Q Consensus         9 i~v~G~~~~GKSsli   23 (210)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.04  E-value=0.045  Score=39.50  Aligned_cols=19  Identities=37%  Similarity=0.520  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028303            9 YIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~   27 (210)
                      .+|.|++|+|||+|+..+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999987765

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.81  E-value=0.053  Score=39.43  Aligned_cols=25  Identities=12%  Similarity=0.130  Sum_probs=20.9

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      ..--+.+.|++++|||+|++.+...
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3456789999999999999998753

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.80  E-value=0.045  Score=40.83  Aligned_cols=22  Identities=32%  Similarity=0.631  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      .++++||+|+|||.+.+.|...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            5788899999999999988643

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.35  E-value=1.3  Score=30.30  Aligned_cols=77  Identities=16%  Similarity=0.120  Sum_probs=49.1

Q ss_pred             EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEecCCCCCCCCCCHH
Q 028303           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVSKE  132 (210)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~  132 (210)
                      .+.+.++|+++...  ......+..+|.+++|...+ ..+...+......+..   .+.|++ +|+|+.+..+. .....
T Consensus       111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~~-~~~~~  183 (237)
T d1g3qa_         111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSDR-DIPPE  183 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCTT-CCCHH
T ss_pred             cCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhcccccccc-hhhhH
Confidence            35678999987643  33444566799999999875 4455555555555543   367776 88999986543 33434


Q ss_pred             HHHHH
Q 028303          133 EGEQF  137 (210)
Q Consensus       133 ~~~~~  137 (210)
                      ..+++
T Consensus       184 ~~~~~  188 (237)
T d1g3qa_         184 AAEDV  188 (237)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            44333

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.00  E-value=0.077  Score=38.96  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |++++|++|+|||+|+..+...
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            6899999999999999888754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.64  E-value=0.078  Score=40.27  Aligned_cols=19  Identities=26%  Similarity=0.497  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 028303            8 KYIIIGDTGVGKSCLLLQF   26 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l   26 (210)
                      -.+|.|++|+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            3688999999999987553

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.89  E-value=0.13  Score=32.44  Aligned_cols=24  Identities=13%  Similarity=0.169  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      -+.|.+.|..|+|||++.+.|...
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHH
Confidence            478999999999999999998643

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.05  E-value=0.13  Score=36.55  Aligned_cols=19  Identities=37%  Similarity=0.356  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028303            9 YIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~   27 (210)
                      ++|.|++.+|||++++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5899999999999999864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=89.00  E-value=0.13  Score=37.18  Aligned_cols=21  Identities=33%  Similarity=0.377  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +.|.|++++|||+|...+...
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            578999999999998887644

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.63  E-value=0.14  Score=36.08  Aligned_cols=19  Identities=37%  Similarity=0.431  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028303            9 YIIIGDTGVGKSCLLLQFT   27 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~   27 (210)
                      ++|.|++.+|||++++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999999864

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.32  E-value=0.15  Score=36.48  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=18.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHHh
Q 028303            7 FKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         7 ~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      .-|+|.|++|+||+.+.+.+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3579999999999999888854

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=87.29  E-value=0.19  Score=35.94  Aligned_cols=89  Identities=15%  Similarity=0.110  Sum_probs=53.0

Q ss_pred             EEEEEEecCCcchhhh-hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeE-EEEEecCCCCCCCCCCH
Q 028303           55 IKLQIWDTAGQESFRS-ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSI-MLVGNKCDLAHRRAVSK  131 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~-ivv~nK~D~~~~~~~~~  131 (210)
                      +.+.++|+|+.-.... ........+|.++++.+. +..++..+......+..... .+.++ -++.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            4678999987543322 233344568888887776 45566665555555544432 23343 37789987643    23


Q ss_pred             HHHHHHHHHcCCeEEEE
Q 028303          132 EEGEQFAKENGLLFLEA  148 (210)
Q Consensus       132 ~~~~~~~~~~~~~~~~~  148 (210)
                      +..+++.+..+.+++-+
T Consensus       191 ~~~~~~~~~~~~~~~~~  207 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIHF  207 (269)
T ss_dssp             HHHHHHHHHHTCCEEEE
T ss_pred             chhhhhHhhcCCeEEEE
Confidence            45666777777765543

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.10  E-value=1.3  Score=28.46  Aligned_cols=27  Identities=11%  Similarity=0.034  Sum_probs=17.8

Q ss_pred             CCeEEEEEecCCCCCCCCCCHHHHHHH
Q 028303          111 NMSIMLVGNKCDLAHRRAVSKEEGEQF  137 (210)
Q Consensus       111 ~~p~ivv~nK~D~~~~~~~~~~~~~~~  137 (210)
                      ++++++.+-..|-..+..-.......+
T Consensus       107 g~~Viv~GLd~Df~~~~F~~~~~Ll~~  133 (141)
T d1xx6a1         107 GRRVICAGLDMDFRGKPFGPIPELMAI  133 (141)
T ss_dssp             TCEEEEEECSBCTTSCBCTTHHHHHHH
T ss_pred             CcEEEEEEeccccccCccchHHHHHhh
Confidence            789999998888765554444443333

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.04  E-value=0.22  Score=36.14  Aligned_cols=22  Identities=32%  Similarity=0.699  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |++++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            6899999999999998888654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=86.11  E-value=0.23  Score=32.06  Aligned_cols=17  Identities=29%  Similarity=0.481  Sum_probs=13.8

Q ss_pred             EEEcCCCCCHHH-HHHHH
Q 028303           10 IIIGDTGVGKSC-LLLQF   26 (210)
Q Consensus        10 ~v~G~~~~GKSs-li~~l   26 (210)
                      +++||-.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            578999999999 55554

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.04  E-value=0.17  Score=34.28  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |+|+|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998744

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=83.35  E-value=0.24  Score=31.38  Aligned_cols=20  Identities=25%  Similarity=0.140  Sum_probs=16.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028303            9 YIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~   28 (210)
                      .+|.+++|+|||.++-.+..
T Consensus        11 ~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          11 AHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            47799999999998765543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.70  E-value=0.44  Score=32.59  Aligned_cols=24  Identities=13%  Similarity=0.052  Sum_probs=21.1

Q ss_pred             ceEEEEEEcCCCCCHHHHHHHHHh
Q 028303            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~   28 (210)
                      ....+++.|++|+|||++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988775

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.51  E-value=0.4  Score=34.49  Aligned_cols=19  Identities=26%  Similarity=0.413  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 028303            8 KYIIIGDTGVGKSCLLLQF   26 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l   26 (210)
                      -|++.|..|+||||+.-.|
T Consensus        10 ~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHH
Confidence            3568999999999975444

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.39  E-value=2.6  Score=27.18  Aligned_cols=25  Identities=20%  Similarity=0.335  Sum_probs=17.4

Q ss_pred             ceEEEEEEcC-CCCCHHHHHHHHHhCC
Q 028303            5 YLFKYIIIGD-TGVGKSCLLLQFTDKR   30 (210)
Q Consensus         5 ~~~~i~v~G~-~~~GKSsli~~l~~~~   30 (210)
                      ..+||.|+|. .++|-+ +...|....
T Consensus         3 ~p~KV~IiGA~G~VG~~-~a~~l~~~~   28 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYS-LLFRIAAGE   28 (154)
T ss_dssp             CCEEEEESSTTSHHHHH-HHHHHHTTT
T ss_pred             CCCEEEEECCCCHHHHH-HHHHHHhcc
Confidence            3689999996 788855 455555443

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=82.24  E-value=0.44  Score=34.38  Aligned_cols=21  Identities=29%  Similarity=0.338  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028303            9 YIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (210)
                      +.+.|++++|||+|...+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            578999999999999887754

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.22  E-value=0.45  Score=34.35  Aligned_cols=20  Identities=25%  Similarity=0.320  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028303            9 YIIIGDTGVGKSCLLLQFTD   28 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l~~   28 (210)
                      +.+.|++++|||+|...+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999877764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.09  E-value=0.43  Score=34.13  Aligned_cols=18  Identities=28%  Similarity=0.650  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 028303            9 YIIIGDTGVGKSCLLLQF   26 (210)
Q Consensus         9 i~v~G~~~~GKSsli~~l   26 (210)
                      |++.|..|+||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            466699999999974443

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=81.26  E-value=0.51  Score=32.09  Aligned_cols=19  Identities=26%  Similarity=0.553  Sum_probs=15.9

Q ss_pred             EEEEEcCC-CCCHHHHHHHH
Q 028303            8 KYIIIGDT-GVGKSCLLLQF   26 (210)
Q Consensus         8 ~i~v~G~~-~~GKSsli~~l   26 (210)
                      |+.|.|-. |+||||+.--|
T Consensus         3 ~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHH
Confidence            68899996 99999986555

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.11  E-value=0.38  Score=35.04  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDK   29 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (210)
                      |++++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            6799999999999998776543

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=80.94  E-value=4.9  Score=26.52  Aligned_cols=100  Identities=16%  Similarity=0.212  Sum_probs=52.7

Q ss_pred             ceEEEEEEcC-CCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-h-------------
Q 028303            5 YLFKYIIIGD-TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-R-------------   69 (210)
Q Consensus         5 ~~~~i~v~G~-~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~-------------   69 (210)
                      ..+||+|+|. .+.|-+. +..|..+.....                 ...+.++++|.+..... .             
T Consensus        23 ~~~kV~I~GA~G~Ig~~l-~~~La~g~v~g~-----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~   84 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHL-LFKLASGEVFGQ-----------------DQPIALKLLGSERSFQALEGVAMELEDSLYPL   84 (175)
T ss_dssp             CCEEEEEETTTSHHHHHH-HHHHHHTTTTCT-----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT
T ss_pred             CCcEEEEECCCcHHHHHH-HHHHHcCcccCC-----------------CceEEEEEecCccccchhcchhhhhccccccc
Confidence            5689999996 6677554 445554432111                 11234556666552111 0             


Q ss_pred             -------hhhHHhhccccEEEEEEECCChh--hHHH--------HHHHHHHHHhhcCCCCeEEEEEecCC
Q 028303           70 -------SITRSYYRGAAGALLVYDITRRE--TFNH--------LSSWLEDARQHANPNMSIMLVGNKCD  122 (210)
Q Consensus        70 -------~~~~~~~~~~d~~i~V~d~~~~~--s~~~--------~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (210)
                             ......+.++|++|++-.....+  +..+        ++.+...+..+..++.-++++.|=+|
T Consensus        85 ~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          85 LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                   01234567889888887665321  2211        12233444454444566667777666

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=80.67  E-value=0.55  Score=33.84  Aligned_cols=89  Identities=11%  Similarity=0.064  Sum_probs=47.6

Q ss_pred             EEEEEEecCCcchhhhhhH-HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEE-EEEecCCCCCCCCCCH
Q 028303           55 IKLQIWDTAGQESFRSITR-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIM-LVGNKCDLAHRRAVSK  131 (210)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~-~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i-vv~nK~D~~~~~~~~~  131 (210)
                      +.+.++|+|+.-....... .....+|.++++.... ..+...+......+.... ..+.++. +|.|+.+...    ..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~----~~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----ED  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh----hH
Confidence            5677899987543322222 2234567666665543 445555555554443332 2345543 7789876422    22


Q ss_pred             HHHHHHHHHcCCeEEEE
Q 028303          132 EEGEQFAKENGLLFLEA  148 (210)
Q Consensus       132 ~~~~~~~~~~~~~~~~~  148 (210)
                      +....+....+.+++..
T Consensus       194 ~~~~~~~~~~g~~vl~~  210 (289)
T d2afhe1         194 ELIIALANKLGTQMIHF  210 (289)
T ss_dssp             HHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHHHcCCeEEEE
Confidence            34556666667766543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=80.32  E-value=0.47  Score=34.35  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 028303            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (210)
Q Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (210)
                      |++++|++|+|||+|+..+....
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eEeeccCCCCChHHHHHHHHhhh
Confidence            57899999999999988765443