Citrus Sinensis ID: 028304

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRSSVGYQPPLPAEQVKPLIEFDYDGEGSPNGPRRGRSGRGRSRGRGILCHYGISCYTCASTHGHDTYKLLFHMHCIGFIFLLYSLHFLRSFA
Secondary Structure (PSIPRED)
cccEEEEEcccccccccccEEEEcccccHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEccccccccccccEEEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccEEEcccccccccEEHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccEEEEccccHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEcccccccccEEEEEEEEEEEEEEcccccccccccccccccHHHcccccccccccccccccccccccccccccccEEEEEccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdryqrvekpkaetpideneiritsQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGlhqntvigstditdtwepleegllplettrHVSMITITLSKkelnrssvgyqpplpaeqvkpliefdydgegspngprrgrsgrgrsrgrgilchygiscytcasthghdtyKLLFHMHCIGFIFLLYSLHFLRSFA
Flexible Loop (DISEMBL)
mdryqrvekpkaetpideneiritsqgrmRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRrivglhqntvigstditdtwepLEEGllplettrhVSMITItlskkelnrssVGYQPPLPAEQVKPLIEFDydgegspngprrgrsgrgrsRGRGILCHYGISCYTCASTHGHDTYKLLFHMHCIGFIFLLYSLHFLRSFA
Low Complexity Region (SEG)
MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWepleegllpleTTRHVSMITITLSKKELNRSSVGYQPPLPAEQVKPLIEFDYDGEgspngprrgrsgrgrsrgrgILCHYGISCYTCASTHGHDTYKLLFHMHCIGFIFLLYSLHFLRSFA
Disordered region (IsUnstruct)
***************************RMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLS***************************************************ILCHYGISCYTCASTHGHDTYKLLFHMHCIGFIFLLYSLHFLR***
Disordered Region (DISOPRED)
**RYQRV************EIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKEL*******************************************************CYTCASTHGHDTYKLLFHMHCIGFIFLLYSLHFLRSFA
Disordered Region (DISEMBL)
*************TPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRSSVGYQPPLPAEQVKPLIEFDYDGEGS*************SRGRGILCHYGISCYTCASTHGHDTYKLLFHMHCIGFIFLLYSLHFLRSFA
Disordered Region (DISPRO)
**RYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRSSVGYQPPLPAEQV***************************RGRGILCHYGISCYTCASTHGHDTYKLLFHMHCIGFIFLLYSLHFLRSFA
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRSSVGYQPPLPAEQVKPLIEFDYDGEGSPNGPRRGRSGRGRSRGRGILCHYGISCYTCASTHGHDTYKLLFHMHCIGFIFLLYSLHFLRSFA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q99JH1	163	Ribonuclease P protein su	yes	no	0.604	0.779	0.338	2e-16
Q8N5L8	163	Ribonuclease P protein su	yes	no	0.576	0.742	0.341	6e-16
Q2KIR4	163	Ribonuclease P protein su	yes	no	0.561	0.723	0.333	3e-14
Q9BUL9	199	Ribonuclease P protein su	no	no	0.519	0.547	0.319	6e-12
Q5PPN2	199	Ribonuclease P protein su	no	no	0.509	0.537	0.307	2e-11
Q91WE3	199	Ribonuclease P protein su	no	no	0.509	0.537	0.307	2e-11
Q9YAX2	102	DNA/RNA-binding protein A	yes	no	0.428	0.882	0.357	0.0004

>sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=2 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 9/136 (6%)

Query: 1   MDRYQRV-------EKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAM 53
           M++Y+R          P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   
Sbjct: 1   MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGS 60

Query: 54  GRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPL--EEGLLPLETTRHVSMITIT 111
           GRA  K V+  E++KRR+ GLHQ T +      D+W P   + GL PL   RHV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query: 112 LSKKELNRSSVGYQPP 127
           LS+  L+ S  GYQPP
Sbjct: 121 LSRDPLDPSECGYQPP 136

May be a component of ribonuclease P or MRP.
Mus musculus (taxid: 10090)

>sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein OS=Homo sapiens GN=RPP25L PE=1 SV=1

 Score = 84.0 bits (206), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 2/123 (1%)

Query: 7   VEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVEL 66
              P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E+
Sbjct: 14  APSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEI 73

Query: 67  IKRRIVGLHQNTVIGSTDITDTWEPL--EEGLLPLETTRHVSMITITLSKKELNRSSVGY 124
           +KRR+ GLHQ T +      D+W P   + GL PL   RHV  + + LS+  L+ +  GY
Sbjct: 74  VKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGY 133

Query: 125 QPP 127
           QPP
Sbjct: 134 QPP 136

May be a component of ribonuclease P or MRP.

Homo sapiens (taxid: 9606)

>sp|Q2KIR4|RP25L_BOVIN Ribonuclease P protein subunit p25-like protein OS=Bos taurus GN=RPP25L PE=2 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 10  PKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKR 69
           P  + P D  E+R+ +  ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KR
Sbjct: 17  PMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query: 70  RIVGLHQNTVIGSTDITDTWEPL--EEGLLPLETTRHVSMITITLSKKELNRSSVGYQPP 127
           R+ GL+Q T +      D+W P   + GL PL    HV  + + LS+  L+ +  GYQPP
Sbjct: 77  RVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVLLSRDPLDPNEYGYQPP 136

May be a component of ribonuclease P or MRP.

Bos taurus (taxid: 9913)

>sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 10/119 (8%)

Query: 21  IRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVI 80
           +R+    ++R+ + +A   + +  +  IVF   GRA  KTVT  E++KRR+ GLHQ T +
Sbjct: 38  MRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  GSTDITDTWEPLEEG----------LLPLETTRHVSMITITLSKKELNRSSVGYQPPLP 129
               + + W+ L  G             L   ++V  + I LSK  L+    GYQPP P
Sbjct: 98  RYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNP 156

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q5PPN2|RPP25_RAT Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 10/117 (8%)

Query: 21  IRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVI 80
           +R+    ++R+ + +A   + +  +  IVF   GRA  KTVT  E++KRR+ GLHQ T +
Sbjct: 38  MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  GSTDITDTWEPL----------EEGLLPLETTRHVSMITITLSKKELNRSSVGYQPP 127
               + + W+ L           +    L   ++V  + I LSK  L+   +GYQPP
Sbjct: 98  RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q91WE3|RPP25_MOUSE Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 10/117 (8%)

Query: 21  IRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVI 80
           +R+    ++R+ + +A   + +  +  IVF   GRA  KTVT  E++KRR+ GLHQ T +
Sbjct: 38  MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  GSTDITDTWEPL----------EEGLLPLETTRHVSMITITLSKKELNRSSVGYQPP 127
               + + W+ L           +    L   ++V  + I LSK  L+   +GYQPP
Sbjct: 98  RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q9YAX2|ALBA2_AERPE DNA/RNA-binding protein Alba 2 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=albA2 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 20  EIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTV 79
           E+RI  +  M +Y+   +T L E+G+N++V KA GR IN+ V  VE++++R     +N  
Sbjct: 8   EVRIGRKPVM-NYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKR---FAKNIE 63

Query: 80  IGSTDITDTWEPLEEGLLPLETTRHVSMITITLSK 114
           I    I D+ E   +       TR VS I I L K
Sbjct: 64  IKDIKI-DSQEIEVQTPEGQTRTRRVSSIEICLEK 97

Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes.

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
359492084	257	PREDICTED: uncharacterized protein LOC10	0.704	0.575	0.918	1e-73
302141727	514	unnamed protein product [Vitis vinifera]	0.704	0.287	0.918	2e-73
358248282	249	uncharacterized protein LOC100818986 [Gl	0.7	0.590	0.904	1e-72
449437182	264	PREDICTED: ribonuclease P protein subuni	0.7	0.556	0.911	2e-72
388502700	250	unknown [Lotus japonicus]	0.7	0.588	0.884	1e-70
84468342	248	hypothetical protein [Trifolium pratense	0.7	0.592	0.863	4e-68
357464475	245	Ribonuclease P protein subunit p25 [Medi	0.7	0.6	0.850	1e-67
356509014	261	PREDICTED: uncharacterized protein LOC10	0.7	0.563	0.857	2e-67
357464479	351	Ribonuclease P protein subunit p25 [Medi	0.657	0.393	0.850	6e-67
168005734	266	predicted protein [Physcomitrella patens	0.7	0.552	0.823	8e-67

>gi|359492084|ref|XP_002284740.2| PREDICTED: uncharacterized protein LOC100254082 [Vitis vinifera] gi|147804669|emb|CAN73522.1| hypothetical protein VITISV_004987 [Vitis vinifera]

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 136/148 (91%), Positives = 142/148 (95%)

Query: 1   MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKT 60
           MDRYQRVEKP+ ETPIDENEIRITSQGRMRSYITYAM+LLQE+GSNEIVFKAMGRAINKT
Sbjct: 1   MDRYQRVEKPREETPIDENEIRITSQGRMRSYITYAMSLLQEKGSNEIVFKAMGRAINKT 60

Query: 61  VTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRS 120
           VTIVELIKRRIVGLHQNT IGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELN S
Sbjct: 61  VTIVELIKRRIVGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNTS 120

Query: 121 SVGYQPPLPAEQVKPLIEFDYDGEGSPN 148
           S+GYQPPLPAEQVK   EFDY+GEGSP+
Sbjct: 121 SIGYQPPLPAEQVKAWTEFDYEGEGSPS 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141727|emb|CBI18930.3| unnamed protein product [Vitis vinifera]

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/148 (91%), Positives = 142/148 (95%)

Query: 1   MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKT 60
           MDRYQRVEKP+ ETPIDENEIRITSQGRMRSYITYAM+LLQE+GSNEIVFKAMGRAINKT
Sbjct: 258 MDRYQRVEKPREETPIDENEIRITSQGRMRSYITYAMSLLQEKGSNEIVFKAMGRAINKT 317

Query: 61  VTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRS 120
           VTIVELIKRRIVGLHQNT IGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELN S
Sbjct: 318 VTIVELIKRRIVGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNTS 377

Query: 121 SVGYQPPLPAEQVKPLIEFDYDGEGSPN 148
           S+GYQPPLPAEQVK   EFDY+GEGSP+
Sbjct: 378 SIGYQPPLPAEQVKAWTEFDYEGEGSPS 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248282|ref|NP_001239854.1| uncharacterized protein LOC100818986 [Glycine max] gi|255639553|gb|ACU20071.1| unknown [Glycine max]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/147 (90%), Positives = 142/147 (96%)

Query: 1   MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKT 60
           MDRYQ+VEKP+AETPIDENEIRITSQGRMR+YITYAM+LLQE+GSNEIVFKAMGRAINKT
Sbjct: 1   MDRYQKVEKPRAETPIDENEIRITSQGRMRNYITYAMSLLQEKGSNEIVFKAMGRAINKT 60

Query: 61  VTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRS 120
           VTIVELIKRRIVGLHQNT IGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKEL+ S
Sbjct: 61  VTIVELIKRRIVGLHQNTAIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 SVGYQPPLPAEQVKPLIEFDYDGEGSP 147
           SVGYQPPLPA+QVK   +FDY+GEGSP
Sbjct: 121 SVGYQPPLPADQVKAATDFDYEGEGSP 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437182|ref|XP_004136371.1| PREDICTED: ribonuclease P protein subunit p25-like protein-like [Cucumis sativus] gi|449511234|ref|XP_004163900.1| PREDICTED: ribonuclease P protein subunit p25-like protein-like [Cucumis sativus]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/147 (91%), Positives = 141/147 (95%)

Query: 1   MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKT 60
           MDRY RVEKP+AETPIDENEIRITSQGRMR+YITYAMTLLQE+GSNEIVFKAMGRAINKT
Sbjct: 1   MDRYHRVEKPRAETPIDENEIRITSQGRMRNYITYAMTLLQEKGSNEIVFKAMGRAINKT 60

Query: 61  VTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRS 120
           VTIVELIKRRIVGLHQNT IGSTDITDTWEPLEEGLLPLETTRHVSMI ITLSKKELN+S
Sbjct: 61  VTIVELIKRRIVGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVSMIVITLSKKELNKS 120

Query: 121 SVGYQPPLPAEQVKPLIEFDYDGEGSP 147
           SVGYQPPLPAE VK  +E+DY+GEGSP
Sbjct: 121 SVGYQPPLPAELVKTFVEYDYEGEGSP 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502700|gb|AFK39416.1| unknown [Lotus japonicus]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/147 (88%), Positives = 139/147 (94%)

Query: 1   MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKT 60
           MDRYQ+VEKP+AET IDENEIRITSQGRMR+YITYAMTLLQE+GSNEIVFKAMGRAINKT
Sbjct: 1   MDRYQKVEKPRAETSIDENEIRITSQGRMRNYITYAMTLLQEKGSNEIVFKAMGRAINKT 60

Query: 61  VTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRS 120
           VTIVELIKRRIVGLHQNT IGSTDITDTWEPLEEGLLPLETTRHVSMITITLSK EL+ +
Sbjct: 61  VTIVELIKRRIVGLHQNTAIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKNELDTA 120

Query: 121 SVGYQPPLPAEQVKPLIEFDYDGEGSP 147
           SVGYQPPLPA+QVK   +FDY+GE SP
Sbjct: 121 SVGYQPPLPADQVKAATDFDYEGESSP 147

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468342|dbj|BAE71254.1| hypothetical protein [Trifolium pratense]

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 127/147 (86%), Positives = 138/147 (93%)

Query: 1   MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKT 60
           MDRYQRVEKPKA+ PI+ENEIRIT+QGRMR+YITYA TL QE+G++EIV KAMGRAINKT
Sbjct: 1   MDRYQRVEKPKADGPINENEIRITTQGRMRNYITYATTLFQEKGTDEIVLKAMGRAINKT 60

Query: 61  VTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRS 120
           VTI ELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKEL+ S
Sbjct: 61  VTITELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 SVGYQPPLPAEQVKPLIEFDYDGEGSP 147
           S GYQPPLPA+QVKPL E++ DGEGSP
Sbjct: 121 STGYQPPLPADQVKPLNEYEEDGEGSP 147

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464475|ref|XP_003602519.1| Ribonuclease P protein subunit p25 [Medicago truncatula] gi|355491567|gb|AES72770.1| Ribonuclease P protein subunit p25 [Medicago truncatula]

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/147 (85%), Positives = 138/147 (93%)

Query: 1   MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKT 60
           MDRYQRVEKPKA++PI+ENEIRIT+QGRMR+YITYA TL QE+G+ EIV KAMGRAINKT
Sbjct: 1   MDRYQRVEKPKADSPINENEIRITTQGRMRNYITYATTLFQEKGTEEIVLKAMGRAINKT 60

Query: 61  VTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRS 120
           VTI ELIKRRIVGLHQNT+IGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKEL+ S
Sbjct: 61  VTITELIKRRIVGLHQNTIIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 SVGYQPPLPAEQVKPLIEFDYDGEGSP 147
           S GYQPPLPA+QVKPL E++ +GEGSP
Sbjct: 121 STGYQPPLPADQVKPLNEYEEEGEGSP 147

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509014|ref|XP_003523247.1| PREDICTED: uncharacterized protein LOC100792158 [Glycine max]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/147 (85%), Positives = 136/147 (92%)

Query: 1   MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKT 60
           MDRYQRVEKPKAE+PI+ENEIR+TSQGR R+YITYA TLLQE+GS+EIV KAMGRAINKT
Sbjct: 1   MDRYQRVEKPKAESPINENEIRVTSQGRTRNYITYATTLLQEKGSSEIVLKAMGRAINKT 60

Query: 61  VTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRS 120
           V I ELIKRRIVGLHQNT IGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKEL+ S
Sbjct: 61  VMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 SVGYQPPLPAEQVKPLIEFDYDGEGSP 147
           S GYQPPLP +QVKPL E+D +GEGSP
Sbjct: 121 STGYQPPLPVDQVKPLNEYDEEGEGSP 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464479|ref|XP_003602521.1| Ribonuclease P protein subunit p25 [Medicago truncatula] gi|355491569|gb|AES72772.1| Ribonuclease P protein subunit p25 [Medicago truncatula]

 Score =  259 bits (661), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 125/147 (85%), Positives = 137/147 (93%)

Query: 1   MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKT 60
           MDRYQRVEKPKA++PI+ENEIRIT+QGRMR+YITYA TL QE+GS+EIV KAMGRAINKT
Sbjct: 107 MDRYQRVEKPKADSPINENEIRITTQGRMRNYITYATTLFQEKGSDEIVVKAMGRAINKT 166

Query: 61  VTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRS 120
           V I ELIKRRIVGLHQNT IGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKEL+ S
Sbjct: 167 VMITELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 226

Query: 121 SVGYQPPLPAEQVKPLIEFDYDGEGSP 147
           S GYQPPLPA+QVKPL E++ +GEGSP
Sbjct: 227 STGYQPPLPADQVKPLNEYEDEGEGSP 253

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168005734|ref|XP_001755565.1| predicted protein [Physcomitrella patens subsp. patens] gi|162693272|gb|EDQ79625.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 121/147 (82%), Positives = 136/147 (92%)

Query: 1   MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKT 60
           MDRYQRVEKP+ E PI ENEIRIT+QG+MR+YITYA TLLQ++GS+EIV KAMGRAINKT
Sbjct: 1   MDRYQRVEKPRPEIPISENEIRITTQGKMRNYITYATTLLQDKGSSEIVLKAMGRAINKT 60

Query: 61  VTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRS 120
           VTI E+IKRRI GLHQNT IGSTDITD WEP+EEGLLPLETTRHVSMITITLS KEL +S
Sbjct: 61  VTIAEIIKRRIAGLHQNTSIGSTDITDLWEPIEEGLLPLETTRHVSMITITLSTKELEKS 120

Query: 121 SVGYQPPLPAEQVKPLIEFDYDGEGSP 147
           S+GYQPPLPA+QVKPL+EFDY+G+GSP
Sbjct: 121 SIGYQPPLPADQVKPLVEFDYEGDGSP 147

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2198551	315	AT1G20220 [Arabidopsis thalian	0.685	0.457	0.743	5.6e-52
TAIR|locus:2204400	350	AT1G76010 [Arabidopsis thalian	0.680	0.408	0.755	9.2e-52
TAIR|locus:2077547	405	AT3G07030 [Arabidopsis thalian	0.642	0.333	0.577	5.7e-36
UNIPROTKB|E1BQE8	164	RPP25 "Uncharacterized protein	0.623	0.798	0.302	3.3e-15
DICTYBASE|DDB_G0281409	369	drpp25 "RNase MRP protein subu	0.661	0.376	0.351	5e-15
RGD|1306576	163	Rpp25l "ribonuclease P/MRP 25	0.604	0.779	0.323	4.9e-14
MGI|MGI:1917211	163	Rpp25l "ribonuclease P/MRP 25	0.604	0.779	0.323	6.2e-14
UNIPROTKB|Q8N5L8	163	RPP25L "Ribonuclease P protein	0.561	0.723	0.316	2.1e-13
UNIPROTKB|F1SEB9	163	RPP25L "Uncharacterized protei	0.561	0.723	0.316	2.1e-13
UNIPROTKB|E2R227	163	LOC486757 "Uncharacterized pro	0.561	0.723	0.316	2.7e-13

TAIR|locus:2198551 AT1G20220 [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 107/144 (74%), Positives = 118/144 (81%)

Query:     1 MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKT 60
             MD+YQRVEKPKA+TPI ENEIRITS GR R+YITYAM LLQE  SNE++FKAMGRAINK+
Sbjct:     1 MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query:    61 VTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTTRHVSMITITLSKKELNRS 120
             VTIVELIKRRI GLHQ T IGSTDITDTW           TTRHVSMITITLSK++LN S
Sbjct:    61 VTIVELIKRRIPGLHQITSIGSTDITDTWEPTEEGLQTIETTRHVSMITITLSKEQLNTS 120

Query:   121 SVGYQPPLPAEQVKPLIEFDYDGE 144
             SVGYQ P+P E VKPL E DY+G+
Sbjct:   121 SVGYQCPIPIEMVKPLAEIDYEGQ 144

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2204400 AT1G76010 [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 108/143 (75%), Positives = 118/143 (82%)

Query:     1 MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKT 60
             MD+YQRV KPKA+TPID NEIRITSQGR R+YITYAMTLLQ++GS E+VFKAMGRAINKT
Sbjct:     1 MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query:    61 VTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTTRHVSMITITLSKKELNRS 120
             VTIVELIKRRI  LHQNT IGSTDITDTW           TTRHVSMITITLSK ELN S
Sbjct:    61 VTIVELIKRRIPDLHQNTSIGSTDITDTWEPTEEGLLPLETTRHVSMITITLSKIELNTS 120

Query:   121 SVGYQPPLPAEQVKPLIEFDYDG 143
             SVGYQ P+P E VKP+ + DY+G
Sbjct:   121 SVGYQCPIPIELVKPMGDIDYEG 143

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2077547 AT3G07030 [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 78/135 (57%), Positives = 97/135 (71%)

Query:     1 MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKT 60
             MDRYQRV KPK E+PI+ENEIRITS+G +R+YI+YA +LLQE+   +IV KAMG+AI+KT
Sbjct:     1 MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query:    61 VTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTTRHVSMITITLSKKELNRS 120
             V I E++K +I GLHQ+  I S  ITD W            TRHVSMI+ITLS  ELN+ 
Sbjct:    61 VAISEILKNKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKD 120

Query:   121 SVGYQPPLPAEQVKP 135
             S GYQ P  ++Q KP
Sbjct:   121 SPGYQAPAQSDQSKP 135

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|E1BQE8 RPP25 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 43/142 (30%), Positives = 77/142 (54%)

Query:     1 MDRYQRVEKPKAETPID-EN------EIRITSQGRMRSYITYAMTLLQERGSNEIVFKAM 53
             M+ +++V   + E+P+   N      E+++    ++R+ +++AM  ++ +GS +IVF   
Sbjct:     1 MENFRKVRTSEEESPLPFPNLPPGVVEMKVKEGSKIRNLMSFAMAQMELKGSRQIVFSGC 60

Query:    54 GRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWXXXX----XXXXXXXTTRHVSMIT 109
             GRA+ KT+T VE++KR++ GLHQ T +    + + W                 ++V  I 
Sbjct:    61 GRAVTKTITCVEIMKRKLGGLHQVTKVRYKTLLEVWENQDPLPGGAAQNLTVHKNVPSIC 120

Query:   110 ITLSKKELNRSSVGYQPPLPAE 131
             I LS+  L+ +  GYQPP P E
Sbjct:   121 ILLSRDPLDPNQTGYQPPEPRE 142

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

DICTYBASE|DDB_G0281409 drpp25 "RNase MRP protein subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 195 (73.7 bits), Expect = 5.0e-15, P = 5.0e-15
 Identities = 51/145 (35%), Positives = 77/145 (53%)

Query:     1 MDRYQRVEKPKAETPIDENEIRITS-QGRMRSYITYAMTLLQERGSNEIVFKAMG-RAIN 58
             MD+Y RV +   +   + NE+RI     ++ S I Y + L   +  + I+ KA+G + I+
Sbjct:     1 MDKYYRVPRTY-DNDTEANEVRIGGVHSQVSSSIEYGLNLFN-KPHDSIIVKAIGSKMIS 58

Query:    59 KTVTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTTRHVSMITITLSKKELN 118
             K +   E+IK R+ GLHQ T IG+T+I   +            ++  + I ITLSK  L+
Sbjct:    59 KAIFTAEIIKLRVPGLHQITEIGTTEIVTQYMPKEEGLDKVEISKKSAFIKITLSKTPLD 118

Query:   119 RSSVGYQPPLPAE--QVKPLIEFDY 141
              ++ GYQPPLP    Q KP    DY
Sbjct:   119 TTNPGYQPPLPESETQKKPTRPRDY 143

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

RGD|1306576 Rpp25l "ribonuclease P/MRP 25 subunit-like" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 44/136 (32%), Positives = 68/136 (50%)

Query:     1 MDRYQR---VEKPKA----ETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAM 53
             M+ Y+R   VE P +    + P D  E+R+    ++R+ +  A+  L+   +  +VF   
Sbjct:     1 MEHYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALARLEGGSTRHVVFSGS 60

Query:    54 GRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITIT 111
             GRA  K V+  E++KRR+ GLHQ T +      D+W            T  RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query:   112 LSKKELNRSSVGYQPP 127
             LS+  L+ S  GYQPP
Sbjct:   121 LSRDPLDPSECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1917211 Rpp25l "ribonuclease P/MRP 25 subunit-like" [Mus musculus (taxid:10090)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 44/136 (32%), Positives = 69/136 (50%)

Query:     1 MDRYQR---VEKPKA----ETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAM 53
             M++Y+R   VE P +    + P D  E+R+    ++R+ +  A+  L+   +  +VF   
Sbjct:     1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGS 60

Query:    54 GRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITIT 111
             GRA  K V+  E++KRR+ GLHQ T +      D+W            T  RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query:   112 LSKKELNRSSVGYQPP 127
             LS+  L+ S  GYQPP
Sbjct:   121 LSRDPLDPSECGYQPP 136

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8N5L8 RPP25L "Ribonuclease P protein subunit p25-like protein" [Homo sapiens (taxid:9606)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/120 (31%), Positives = 60/120 (50%)

Query:    10 PKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKR 69
             P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KR
Sbjct:    17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query:    70 RIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITITLSKKELNRSSVGYQPP 127
             R+ GLHQ T +      D+W            T  RHV  + + LS+  L+ +  GYQPP
Sbjct:    77 RVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SEB9 RPP25L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/120 (31%), Positives = 60/120 (50%)

Query:    10 PKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKR 69
             P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KR
Sbjct:    17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query:    70 RIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITITLSKKELNRSSVGYQPP 127
             R+ GLHQ T +      D+W            T  RHV  + + LS+  L+ +  GYQPP
Sbjct:    77 RVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R227 LOC486757 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 38/120 (31%), Positives = 60/120 (50%)

Query:    10 PKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKR 69
             P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KR
Sbjct:    17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query:    70 RIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITITLSKKELNRSSVGYQPP 127
             R+ GLHQ T +      D+W            T  RHV  + + LS+  L+ +  GYQPP
Sbjct:    77 RVPGLHQLTKLHFLQTEDSWVPISPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
pfam01918	67	pfam01918, Alba, Alba	1e-20
PRK04015	91	PRK04015, PRK04015, DNA/RNA-binding protein albA;	4e-10
COG1581	91	COG1581, Ssh10b, Archaeal DNA-binding protein [Tra	3e-08
pfam12328	108	pfam12328, Rpp20, Rpp20 subunit of nuclear RNase M	2e-05
TIGR00285	87	TIGR00285, TIGR00285, DNA-binding protein Alba	9e-05

>gnl|CDD|216785 pfam01918, Alba, Alba

 Score = 81.1 bits (201), Expect = 1e-20
 Identities = 29/66 (43%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 19 NEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLHQN 77
          N I ++S+  + +Y+  A+ LL+  G++E+V K +GRAI+K V++ E++KRR   GLHQ 
Sbjct: 1  NVIYVSSKSPIMNYVKRALKLLENGGADEVVLKGLGRAISKAVSVAEILKRRFLKGLHQV 60

Query: 78 TVIGST 83
           VI ST
Sbjct: 61 NVITST 66

Alba is a novel chromosomal protein that coats archaeal DNA without compacting it. Length = 67

>gnl|CDD|235199 PRK04015, PRK04015, DNA/RNA-binding protein albA; Provisional

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 12/102 (11%)

Query: 15  PIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGL 74
             +EN + +  +  M +Y+   +T   + G+ E+V KA GRAI+K V + E+++ R +  
Sbjct: 1   MAEENVVLVGKKPVM-NYVLAVLTQFNQ-GAKEVVIKARGRAISKAVDVAEIVRNRFL-- 56

Query: 75  HQNTVIGSTDI-TDTWEPLEEGLLPLETTRHVSMITITLSKK 115
             +  I    I T+     E+G        +VS I I L KK
Sbjct: 57  -PDVEIKEIKIGTEEVTS-EDG-----RESNVSTIEIVLEKK 91

Length = 91

>gnl|CDD|224497 COG1581, Ssh10b, Archaeal DNA-binding protein [Transcription]

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 18  ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQN 77
           EN + +  +  M +Y+   +T   E G++E++ KA GRAI+K V + E+++ R +    +
Sbjct: 4   ENVVLVGKKPVM-NYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVRNRFI---PD 58

Query: 78  TVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKK 115
             I    I       E+G      TR+VS I I L+KK
Sbjct: 59  VQIKDIKIGTEELEGEDG-----RTRNVSTIEIVLAKK 91

Length = 91

>gnl|CDD|221532 pfam12328, Rpp20, Rpp20 subunit of nuclear RNase MRP and P

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 45  SNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITD---TWEPLEEGLLPLET 101
             E+V K MG+AI K +++    +R       +   G+ ++ D     E  ++   P   
Sbjct: 40  LEEVVVKGMGKAIEKALSLALHFQREK-NYKVDVRTGTVEVVDEIVEDEDDDDDEEPETR 98

Query: 102 TRHVSMITI 110
            R VS + +
Sbjct: 99  KRTVSAVEV 107

The nuclear RNase P of Saccharomyces cerevisiae is made up of at least nine protein subunits; Pop1, Pop3, Pop4, Pop5, Pop6, Pop7, Pop8, Rpr2 and Rpp1. Many of these subunits seem to be present also in the RNase MRP, with the exception of Rpr2 (Rpp21) which is unique to RNase P. Human nuclear RNase P and MRP appear to contain at least 10 protein subunits, Rpp14, Rpp20, Rpp21, Rpp25, Rpp29, Rpp30, Rpp38, Rpp40, hPop1 and hPop5, although there is recent evidence that not all of these subunits are shared between P and MRP. Archaeal RNase P has at least four protein subunits homologous to eukaryotic RNase P/MRP proteins. In the yeast RNase P, Pop6 and Pop7 (the Rpp20 homologue) interact with each other and they are both interaction partners of Pop4; in the human MRP Rpp25 and Rpp20 interact with each other and Rpp25 binds to Rpp29 (Pop4). Length = 108

>gnl|CDD|129386 TIGR00285, TIGR00285, DNA-binding protein Alba

 Score = 39.8 bits (93), Expect = 9e-05
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 18  ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQN 77
           EN + I ++  M +Y+   +T L   G++E++ KA GRAI++ V + E+++ R       
Sbjct: 1   ENVVYIGNKPVM-NYVLAVLTQLNS-GADEVIIKARGRAISRAVDVAEIVRNRF------ 52

Query: 78  TVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSK 114
             I    I       EE         +VS I I L+K
Sbjct: 53  --IPDIKIKKIKIGTEEIKSEQGREVNVSTIEIVLAK 87

Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenace of chromatin architecture and thereby in transcription repression. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity [DNA metabolism, Chromosome-associated proteins]. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
KOG2567	179	consensus Uncharacterized conserved protein [Funct	100.0
PRK04015	91	DNA/RNA-binding protein albA; Provisional	99.86
TIGR00285	87	DNA-binding protein Alba. This protein appears so	99.83
COG1581	91	Ssh10b Archaeal DNA-binding protein [Transcription	99.82
PF01918	70	Alba: Alba; InterPro: IPR002775 Members of this fa	99.69
PF12328	144	Rpp20: Rpp20 subunit of nuclear RNase MRP and P; P	99.34
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	91.72
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	91.31
PF04232	86	SpoVS: Stage V sporulation protein S (SpoVS); Inte	80.13

>KOG2567 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.6e-49  Score=326.96  Aligned_cols=144  Identities=45%  Similarity=0.690  Sum_probs=139.8

Q ss_pred             CCCceeccCCCCCCCCCCCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEE
Q 028304            1 MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVI   80 (210)
Q Consensus         1 Md~Y~rV~kp~~~~p~~~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I   80 (210)
                      ||.|++|-||+++.|++.|+|||+.+++++|||.||+.+|++++.+.|||+|||+||+|+|+||||||||++||||+|+|
T Consensus         1 ~~~e~~~~kP~~d~pp~a~emrV~~g~kirN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l   80 (179)
T KOG2567|consen    1 MSVEQPASKPFPDLPPDANEMRVKSGSKIRNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRL   80 (179)
T ss_pred             CccccccCCCcccCCCCcceEEEccCchHHHHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhcee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeccceecccCCCcceeeeeeeEEEEEEecccCCCCCCCcCCCCCcCCCcccccccCCCC
Q 028304           81 GSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRSSVGYQPPLPAEQVKPLIEFDYDGE  144 (210)
Q Consensus        81 ~tv~i~d~~eP~eEGl~~l~~~R~VS~I~ItLSk~~LD~~~~GYQ~Plp~~~v~~~~~~~~~~~  144 (210)
                      .+++++|.|+|.+|||++++++|+||+|+|+||+++||++++|||+|.|....+.+..-+|++.
T Consensus        81 ~~~sv~d~W~p~~eGl~pl~vtRhVp~l~IlLS~deL~~~~~GyQ~P~~~p~p~~~~~~p~~~~  144 (179)
T KOG2567|consen   81 RYTSVEDVWEPTEEGLEPLEVTRHVPMLHILLSLDELDPTSPGYQPPNPQPHPRSQPRHPYSPR  144 (179)
T ss_pred             eeeehhhcccccccCccceEEeeccceEEEEEecccCCCCCCCccCCCCCCCCCCcccCCcccc
Confidence            9999999999999999999999999999999999999999999999999888888777777654

>PRK04015 DNA/RNA-binding protein albA; Provisional

Probab=99.86  E-value=3.3e-21  Score=147.11  Aligned_cols=90  Identities=32%  Similarity=0.471  Sum_probs=73.8

Q ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeeccceecccC
Q 028304           16 IDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEG   95 (210)
Q Consensus        16 ~~~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I~tv~i~d~~eP~eEG   95 (210)
                      ..+|+|+|++++.| |||.+++.+|++ +.++|+|||+|+||+|||+|||+||+|+-..+   ++..+++..+-...++|
T Consensus         2 ~~en~i~Ig~kpvm-nYV~~~~~~l~~-g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v---~v~~I~i~se~i~~~~g   76 (91)
T PRK04015          2 AEENVVLVGKKPVM-NYVLAVLTQFNQ-GAKEVVIKARGRAISKAVDVAEIVRNRFLPDV---EIKEIKIGTEEVTSEDG   76 (91)
T ss_pred             CCCCEEEEcCCcHH-HHHHHHHHHHhC-CCCeEEEEEeccccchhhhHHHHHHHhccCCe---EEEEEEeccEEeecCCC
Confidence            35899999999755 999999999994 89999999999999999999999999984334   44555555443334556


Q ss_pred             CCcceeeeeeeEEEEEEecc
Q 028304           96 LLPLETTRHVSMITITLSKK  115 (210)
Q Consensus        96 l~~l~~~R~VS~I~ItLSk~  115 (210)
                           .+|+||+|+|+|++.
T Consensus        77 -----~~~~VS~IEI~l~k~   91 (91)
T PRK04015         77 -----RESNVSTIEIVLEKK   91 (91)
T ss_pred             -----cEEEEEEEEEEEecC
Confidence                 689999999999874

>TIGR00285 DNA-binding protein Alba

Probab=99.83  E-value=4.4e-20  Score=139.84  Aligned_cols=87  Identities=32%  Similarity=0.471  Sum_probs=76.0

Q ss_pred             CCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeeccceecccCCC
Q 028304           18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLL   97 (210)
Q Consensus        18 ~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I~tv~i~d~~eP~eEGl~   97 (210)
                      +|.|+|++||-| |||.+++.+|++ |.++|+|||+|+||+|||+|||+||+|+...+   ++..+++.++-.+.++|  
T Consensus         1 e~~i~vG~KPvm-nYVlavlt~fn~-g~~eV~iKarG~aIskAVdvaeiik~r~~~~v---~v~~I~i~te~~~~~~G--   73 (87)
T TIGR00285         1 ENVVYIGNKPVM-NYVLAVLTQLNS-GADEVIIKARGRAISRAVDVAEIVRNRFIPDI---KIKKIKIGTEEIKSEQG--   73 (87)
T ss_pred             CCEEEEcCCcHH-HHHHHHHHHHhC-CCCeEEEEEecchhhhHHHHHHHHHHhccCCc---eEEEEEeccEEeecCCC--
Confidence            589999999988 999999999996 89999999999999999999999999984333   66667777666666777  


Q ss_pred             cceeeeeeeEEEEEEec
Q 028304           98 PLETTRHVSMITITLSK  114 (210)
Q Consensus        98 ~l~~~R~VS~I~ItLSk  114 (210)
                         .+|+||+|+|.|.+
T Consensus        74 ---~~~~VStIEI~l~~   87 (87)
T TIGR00285        74 ---REVNVSTIEIVLAK   87 (87)
T ss_pred             ---ceeeEEEEEEEEeC
Confidence               78899999999975

This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.

>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]

Probab=99.82  E-value=1.2e-19  Score=137.27  Aligned_cols=87  Identities=34%  Similarity=0.532  Sum_probs=78.2

Q ss_pred             CCCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhc-CCceeEEEEEEEEeeccceecccC
Q 028304           17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLHQNTVIGSTDITDTWEPLEEG   95 (210)
Q Consensus        17 ~~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi-~GLhQ~t~I~tv~i~d~~eP~eEG   95 (210)
                      ++|.|+|++|+.| |||..++.+|++ |.++|+|||+|+||||||++||+++.|| |++    ++..+++.++-...++|
T Consensus         3 ~envV~vG~KPvm-NYVlAvlt~fn~-g~~eViiKARGraIskAVDvaeivRnrf~p~v----~ik~Iki~se~~~~~~g   76 (91)
T COG1581           3 EENVVLVGKKPVM-NYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVRNRFIPDV----QIKDIKIGTEELEGEDG   76 (91)
T ss_pred             CccEEEEcCcchH-HHHHHHHHHHHc-CCCEEEEEecchhhHhhHhHHHHHHHhcCCCc----eEEEEEecceeeecCCC
Confidence            4699999999988 999999999998 7999999999999999999999999998 665    78888887766666667


Q ss_pred             CCcceeeeeeeEEEEEEec
Q 028304           96 LLPLETTRHVSMITITLSK  114 (210)
Q Consensus        96 l~~l~~~R~VS~I~ItLSk  114 (210)
                           .+++||+|+|.|.+
T Consensus        77 -----r~~~VS~IeI~L~k   90 (91)
T COG1581          77 -----RTRNVSTIEIVLAK   90 (91)
T ss_pred             -----ceeeEEEEEEEEec
Confidence                 68899999999986

>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function

Probab=99.69  E-value=1.8e-16  Score=113.53  Aligned_cols=65  Identities=40%  Similarity=0.653  Sum_probs=58.0

Q ss_pred             CEEEEcCCCchHHHHHHHHHHH---hhCCCCeEEEEEcChhHHHHHHHHHHHHHhcC-CceeEEEEEEE
Q 028304           19 NEIRITSQGRMRSYITYAMTLL---QERGSNEIVFKAMGRAINKTVTIVELIKRRIV-GLHQNTVIGST   83 (210)
Q Consensus        19 NeIrVt~k~~irnYV~~A~~lL---~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~-GLhQ~t~I~tv   83 (210)
                      |+|+|++++++.+||.+|+.+|   ++.+.++|+|+|+|+||+|||+|||+||+++. +|||++.+.+.
T Consensus         1 n~I~V~~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~t   69 (70)
T PF01918_consen    1 NEIYVSSNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITST   69 (70)
T ss_dssp             SEEEE-STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEEE
T ss_pred             CEEEECCCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEecc
Confidence            7999999999999999999999   44479999999999999999999999999994 89999988753

The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....

>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B

Probab=99.34  E-value=6.2e-12  Score=103.17  Aligned_cols=93  Identities=26%  Similarity=0.370  Sum_probs=67.1

Q ss_pred             CCEEEEcCCCchHHHHHHHHHHHhhC-------------------C------------CCeEEEEEcChhHHHHHHHHHH
Q 028304           18 ENEIRITSQGRMRSYITYAMTLLQER-------------------G------------SNEIVFKAMGRAINKTVTIVEL   66 (210)
Q Consensus        18 ~NeIrVt~k~~irnYV~~A~~lL~~~-------------------g------------~~eVvIkA~G~AIsKAV~VAEI   66 (210)
                      ++.|+|++++++-..|.++.++|..-                   +            ..+|+|+|||+||+||++||.-
T Consensus         3 ~~~iyVss~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~~   82 (144)
T PF12328_consen    3 PKVIYVSSKTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLALW   82 (144)
T ss_dssp             TTEEE--SS--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHHH
Confidence            58999999999999999999999521                   1            2799999999999999999999


Q ss_pred             HHHhcCCceeEEEEEEEEeeccceecc------------------cCCCcceeeeeeeEEEEE
Q 028304           67 IKRRIVGLHQNTVIGSTDITDTWEPLE------------------EGLLPLETTRHVSMITIT  111 (210)
Q Consensus        67 LKrRi~GLhQ~t~I~tv~i~d~~eP~e------------------EGl~~l~~~R~VS~I~It  111 (210)
                      +++.- ++--.++++||.+.|++++.+                  ++.++..++|.||+|+|.
T Consensus        83 Fq~~~-~~~V~V~TgTV~vvDdi~~~e~~~~~~~~~~~~~~~~~~~~~~~esR~R~vS~VEv~  144 (144)
T PF12328_consen   83 FQRKK-GYKVEVRTGTVEVVDDIVEDEDEDEDEEESEEREDDDDDEDEEPESRTRWVSMVEVA  144 (144)
T ss_dssp             HHHTT----EEEEEEEEEEEEE-----------------------------EEEEEEEEEEEE
T ss_pred             HhhcC-CeEEEEEeceEEEEEEEeeccccccccccccccccCccccccCccceEEeeEEEEEC
Confidence            98886 677788999999999998653                  456677899999999984

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=91.72  E-value=0.13  Score=48.57  Aligned_cols=16  Identities=44%  Similarity=0.592  Sum_probs=9.8

Q ss_pred             CCCCCCCccccCCcCC
Q 028304          155 SGRGRSRGRGILCHYG  170 (210)
Q Consensus       155 gg~g~~~g~~~~~~~~  170 (210)
                      ||||+|.|+|||+|.+
T Consensus       447 ggrgrgggggrg~y~~  462 (465)
T KOG3973|consen  447 GGRGRGGGGGRGGYRG  462 (465)
T ss_pred             CCCCCCCCCCCcccCC
Confidence            3455556667777654

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=91.31  E-value=0.059  Score=53.17  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHhcCCceeEEEEEEE--Eeeccceecc
Q 028304           59 KTVTIVELIKRRIVGLHQNTVIGST--DITDTWEPLE   93 (210)
Q Consensus        59 KAV~VAEILKrRi~GLhQ~t~I~tv--~i~d~~eP~e   93 (210)
                      .|+.+++=|-.-+.+|+-..-+-..  .|+=.|.+..
T Consensus       429 ~aLkt~~NI~~lik~L~~~pPsf~~~~~itlSWk~~~  465 (556)
T PF05918_consen  429 TALKTTNNILALIKDLFHNPPSFKSTKNITLSWKEAK  465 (556)
T ss_dssp             HHHHHHHHHHHHHCC----------------TTS---
T ss_pred             HHHHHHhhHHHHHHHHhhCCcccccccccceeeeecc
Confidence            4554444444445565544433322  2666787653

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG

Probab=80.13  E-value=24  Score=26.93  Aligned_cols=51  Identities=16%  Similarity=0.359  Sum_probs=34.6

Q ss_pred             CEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcC-hhHHHHHHHHHHHHHhc
Q 028304           19 NEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMG-RAINKTVTIVELIKRRI   71 (210)
Q Consensus        19 NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G-~AIsKAV~VAEILKrRi   71 (210)
                      +.++|+++++....-..-...+.+  ...+.|.|+| .|++.||.-.-|-+.-+
T Consensus         2 e~LKVSs~S~p~~vAgAIa~~lre--~~~v~lqaiGa~AvnqAvKAIAiAR~~l   53 (86)
T PF04232_consen    2 EVLKVSSKSNPNAVAGAIAGVLRE--GGKVELQAIGAGAVNQAVKAIAIARGYL   53 (86)
T ss_dssp             -EEEE-TT--HHHHHHHHHHHHHH--TSEEEEEE-SHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCHHHHHHHHHHHHhc--CCcEEEEEECHHHHHHHHHHHHHHHHhh
Confidence            468999999986666666667776  3599999999 58888887666666554

SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
2h9u_A	102	Crystal Structure Of The Archaea Specific Dna Bindi		7e-06
1h0x_A	100	Structure Of Alba: An Archaeal Chromatin Protein Mo		1e-04
2bky_A	97	Crystal Structure Of The Alba1:alba2 Heterodimer Fr		3e-04
1y9x_A	97	Solution Structure Of Archaeon Dna-Binding Protein		3e-04

>pdb|2H9U|A Chain A, Crystal Structure Of The Archaea Specific Dna Binding Protein Length = 102

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 20  EIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTV 79
           E+RI  +  M +Y+   +T L E+G+N++V KA GR IN+ V  VE++++R     +N  
Sbjct: 8   EVRIGRKPVM-NYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKR---FAKNIE 63
Query: 80  IGSTDITDTWXXXXXXXXXXXTTRHVSMITITLSK 114
           I    I D+             TR VS I I L K
Sbjct: 64  IKDIKI-DSQEIEVQTPEGQTRTRRVSSIEICLEK 97

>pdb|1H0X|A Chain A, Structure Of Alba: An Archaeal Chromatin Protein Modulated By Acetylation Length = 100

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 8  EKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELI 67
          EK  + TP   N + I  +  M +Y+  A+TLL + G +EIV KA GRAI+K V  VE++
Sbjct: 2  EKMSSGTPTPSNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIV 59
Query: 68 KRR 70
          + R
Sbjct: 60 RNR 62

>pdb|2BKY|A Chain A, Crystal Structure Of The Alba1:alba2 Heterodimer From Sulfolobus Solfataricus Length = 97

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 14 TPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
          TP   N + I  +  M +Y+  A+TLL + G +EIV KA GRAI+K V  VE+++ R
Sbjct: 5  TPTPSNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNR 59

>pdb|1Y9X|A Chain A, Solution Structure Of Archaeon Dna-Binding Protein Ssh10b Length = 97

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 14 TPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
          TP   N + I  +  M +Y+  A+TLL + G +EIV KA GRAI+K V  VE+++ R
Sbjct: 5  TPTPSNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNR 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	99.94
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	99.93
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	99.92
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	99.92
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	99.89
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	99.85
1vm0_A	130	Unknown protein; structural genomics, protein stru	99.75
3iab_B	140	Ribonucleases P/MRP protein subunit POP7; RNAse P,	99.67
3iab_A	158	Ribonucleases P/MRP protein subunit POP6; RNAse P,	98.22
1b34_A	119	Protein (small nuclear ribonucleoprotein SM D1); s	92.34

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*

Probab=99.94  E-value=3.1e-26  Score=176.78  Aligned_cols=93  Identities=35%  Similarity=0.543  Sum_probs=85.4

Q ss_pred             CCEEEEcCCCchHHHHHHHH-HHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhc-CCce-eEEEEEEEEeeccceeccc
Q 028304           18 ENEIRITSQGRMRSYITYAM-TLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLH-QNTVIGSTDITDTWEPLEE   94 (210)
Q Consensus        18 ~NeIrVt~k~~irnYV~~A~-~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi-~GLh-Q~t~I~tv~i~d~~eP~eE   94 (210)
                      +|+|+|++++.+ |||.+|+ .+|++ +.++|+|||+|+||+|||+||||||+|+ +||| |.++|++.++.|+|+   +
T Consensus         6 ~n~I~V~~k~~~-nyV~~a~~~ll~~-g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~   80 (102)
T 2h9u_A            6 APEVRIGRKPVM-NYVLAILTTLMEQ-GTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---E   80 (102)
T ss_dssp             CCEEECCSSCHH-HHHHHHHHHHTST-TCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---T
T ss_pred             CCEEEEcCCCHH-HHHHHHHHHHHhC-CCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---C
Confidence            599999999985 9999999 99995 8999999999999999999999999999 8999 999999999998854   5


Q ss_pred             CCCcceeeeeeeEEEEEEecccCC
Q 028304           95 GLLPLETTRHVSMITITLSKKELN  118 (210)
Q Consensus        95 Gl~~l~~~R~VS~I~ItLSk~~LD  118 (210)
                      |+.   ++|+||+|+|+|+++|..
T Consensus        81 g~~---~~r~vS~IeI~Lsk~~~~  101 (102)
T 2h9u_A           81 GQT---RTRRVSSIEICLEKAGES  101 (102)
T ss_dssp             SCE---EEEEEEEEEEEEEECSSC
T ss_pred             Ccc---ceeEeeeEEEEEEccCCC
Confidence            643   799999999999998753

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*

Probab=99.93  E-value=3.6e-25  Score=166.92  Aligned_cols=86  Identities=31%  Similarity=0.588  Sum_probs=78.7

Q ss_pred             CCCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhc-CCce-eEEEEEEEEeeccceeccc
Q 028304           17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLH-QNTVIGSTDITDTWEPLEE   94 (210)
Q Consensus        17 ~~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi-~GLh-Q~t~I~tv~i~d~~eP~eE   94 (210)
                      ++|+|+|++++ +.+||.+|+.+|++ |.++|+|||+|+||+|||+||||||+|+ +||| |.++|+|.++.|     +|
T Consensus         2 ~~n~I~V~~k~-v~~yV~~~~~~l~~-g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e~   74 (89)
T 1nfj_A            2 AEHVVYVGNKP-VMNYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----EQ   74 (89)
T ss_dssp             -CEEEECCSSC-HHHHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----BT
T ss_pred             CCCEEEEcCCC-HHHHHHHHHHHHhC-CCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----CC
Confidence            57999999999 66999999999995 8999999999999999999999999999 9999 999999888765     45


Q ss_pred             CCCcceeeeeeeEEEEEEec
Q 028304           95 GLLPLETTRHVSMITITLSK  114 (210)
Q Consensus        95 Gl~~l~~~R~VS~I~ItLSk  114 (210)
                      |     .+|+||+|+|+|++
T Consensus        75 g-----~~r~vs~IeI~L~k   89 (89)
T 1nfj_A           75 G-----RRSNVSTIEIVLAK   89 (89)
T ss_dssp             T-----BCCEEEEEEEEEEC
T ss_pred             C-----cEEEeeEEEEEEEC
Confidence            6     78999999999985

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A

Probab=99.92  E-value=8.9e-25  Score=167.23  Aligned_cols=89  Identities=37%  Similarity=0.595  Sum_probs=79.6

Q ss_pred             CCCCCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcC-C-c-eeEEEEEEEEeecccee
Q 028304           15 PIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIV-G-L-HQNTVIGSTDITDTWEP   91 (210)
Q Consensus        15 p~~~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~-G-L-hQ~t~I~tv~i~d~~eP   91 (210)
                      +.++|+|+|++++ +.+||.+|+.+|++ |.++|+|||+|+||+|||+||||||+|+. + | ||.++|++.++.|    
T Consensus         6 ~~~~n~I~V~~k~-v~~YV~~a~~ll~~-g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~----   79 (97)
T 2bky_A            6 PTPSNVVLIGKKP-VMNYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTS----   79 (97)
T ss_dssp             ---CCEEECCSSC-HHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEE----
T ss_pred             CCCCCEEEEcCcC-HHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEec----
Confidence            5578999999999 78999999999995 89999999999999999999999999994 4 8 8999999999876    


Q ss_pred             cccCCCcceeeeeeeEEEEEEecc
Q 028304           92 LEEGLLPLETTRHVSMITITLSKK  115 (210)
Q Consensus        92 ~eEGl~~l~~~R~VS~I~ItLSk~  115 (210)
                       +||     .+|+||+|+|+|+++
T Consensus        80 -e~G-----~~r~vS~IeI~L~k~   97 (97)
T 2bky_A           80 -QDG-----RQSRVSTIEIAIRKK   97 (97)
T ss_dssp             -TTS-----CEEEEEEEEEEEEEC
T ss_pred             -CCC-----cEEEeeEEEEEEEcC
Confidence             456     789999999999974

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1

Probab=99.92  E-value=1e-24  Score=163.89  Aligned_cols=84  Identities=31%  Similarity=0.562  Sum_probs=73.5

Q ss_pred             CCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhc-CCce-eEEEEEEEEeeccceecccC
Q 028304           18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLH-QNTVIGSTDITDTWEPLEEG   95 (210)
Q Consensus        18 ~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi-~GLh-Q~t~I~tv~i~d~~eP~eEG   95 (210)
                      +|+|+|+++ ++.+||.+|+.+|++ + ++|+|||+|+||+|||+|||+||+|+ +||| |.++|+|.++.|     +||
T Consensus         2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~-----e~g   73 (87)
T 1nh9_A            2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKN-----PDG   73 (87)
T ss_dssp             CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------
T ss_pred             CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEc-----CCC
Confidence            699999999 788999999999997 7 99999999999999999999999999 8899 999999998876     355


Q ss_pred             CCcceeeeeeeEEEEEEec
Q 028304           96 LLPLETTRHVSMITITLSK  114 (210)
Q Consensus        96 l~~l~~~R~VS~I~ItLSk  114 (210)
                           .+|+||+|+|+|++
T Consensus        74 -----~~r~vS~IeI~L~k   87 (87)
T 1nh9_A           74 -----REVNVSTIEIVLAK   87 (87)
T ss_dssp             ------CCCEEEEEEEEEC
T ss_pred             -----cEEEeeEEEEEEEC
Confidence                 78999999999985

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.89  E-value=5.3e-23  Score=155.93  Aligned_cols=89  Identities=31%  Similarity=0.481  Sum_probs=80.0

Q ss_pred             CCCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeeccceecccCC
Q 028304           17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGL   96 (210)
Q Consensus        17 ~~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I~tv~i~d~~eP~eEGl   96 (210)
                      ++|.|+|++|+-+ +||.+++.+|++ |.++|+|||+|+||+|||++||+||+|+.+   .++++++++.++|.+.++| 
T Consensus         3 ~~~vv~vg~Kpv~-~YV~~~i~~~n~-g~~eV~ikA~G~aIskAVdvaei~k~R~~~---~v~v~~I~I~se~~~~e~G-   76 (91)
T 3toe_A            3 EENVVYIGNKPVM-NYVLAVVTQMNG-GTSEVILKARGIAISRAVDVAEIVRNRFIP---DIQIENIDICTEEIIGNEG-   76 (91)
T ss_dssp             --CCEECCSSCHH-HHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTCT---TCEEEEEEEEEEEEECTTS-
T ss_pred             ccCEEEECCCcHH-HHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHHHhccC---CcEEEEEEeeeEEeecCCC-
Confidence            4799999999955 999999999995 899999999999999999999999999842   3599999999999999999 


Q ss_pred             CcceeeeeeeEEEEEEecc
Q 028304           97 LPLETTRHVSMITITLSKK  115 (210)
Q Consensus        97 ~~l~~~R~VS~I~ItLSk~  115 (210)
                          .+|+||+|+|+|+++
T Consensus        77 ----~~r~VS~IeI~L~k~   91 (91)
T 3toe_A           77 ----TATNVSAIEIQLRKD   91 (91)
T ss_dssp             ----SEEEEEEEEEEEEC-
T ss_pred             ----ceeEeeEEEEEEECC
Confidence                799999999999974

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A

Probab=99.85  E-value=4.5e-21  Score=144.74  Aligned_cols=84  Identities=19%  Similarity=0.293  Sum_probs=70.0

Q ss_pred             CCCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeeccceecccCC
Q 028304           17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGL   96 (210)
Q Consensus        17 ~~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I~tv~i~d~~eP~eEGl   96 (210)
                      ++|.|+|+++ ++.|||.+|+.+|++ +.++|+|||+|+||+|||+|||+||+|+.+.+|..+   +++..+     +  
T Consensus         5 ~~~iv~vg~k-pv~nYV~~~~~~ln~-g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~---i~i~se-----~--   72 (89)
T 2bky_X            5 LNEIVVRKTK-NVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVN---VQTGSE-----V--   72 (89)
T ss_dssp             CEEEECCTTS-CHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEE---EEEEEE-----E--
T ss_pred             CCCEEEECCC-CHHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEE---EEeccc-----c--
Confidence            4678888887 577999999999995 899999999999999999999999999987765544   334322     1  


Q ss_pred             CcceeeeeeeEEEEEEecc
Q 028304           97 LPLETTRHVSMITITLSKK  115 (210)
Q Consensus        97 ~~l~~~R~VS~I~ItLSk~  115 (210)
                         ..+|+||+|+|+|++.
T Consensus        73 ---~~~r~VS~IeI~L~k~   88 (89)
T 2bky_X           73 ---RDRRRISYILLRLKRV   88 (89)
T ss_dssp             ---ETTEEEEEEEEEEEEC
T ss_pred             ---CcceEeeeEEEEEEec
Confidence               3689999999999974

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A

Probab=99.75  E-value=5.2e-18  Score=135.83  Aligned_cols=91  Identities=25%  Similarity=0.380  Sum_probs=70.8

Q ss_pred             CCCCCEEEEcC-CCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeeccceecc
Q 028304           15 PIDENEIRITS-QGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLE   93 (210)
Q Consensus        15 p~~~NeIrVt~-k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I~tv~i~d~~eP~e   93 (210)
                      ..++|+|+|+. +.++.+||.+|+.+|+  ++++|+|+|+|+||++||+||||||+|+-..++.+.+++.++.++     
T Consensus        17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~-----   89 (130)
T 1vm0_A           17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD-----   89 (130)
T ss_dssp             --CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC-------
T ss_pred             CCCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccC-----
Confidence            34689999996 3556699999999998  689999999999999999999999999655556666677776543     


Q ss_pred             cCCCcceeeeeeeEEEEEEeccc
Q 028304           94 EGLLPLETTRHVSMITITLSKKE  116 (210)
Q Consensus        94 EGl~~l~~~R~VS~I~ItLSk~~  116 (210)
                      ++    .++.++|.|+|+|.+.+
T Consensus        90 ~~----~r~v~~skIEI~L~k~~  108 (130)
T 1vm0_A           90 AR----GRPVQKAKIEITLVKSE  108 (130)
T ss_dssp             --------CEEEEEEEEEEEECT
T ss_pred             CC----CcccccceEEEEEEecC
Confidence            11    14566799999999864

>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=99.67  E-value=7.8e-16  Score=124.46  Aligned_cols=108  Identities=17%  Similarity=0.178  Sum_probs=86.6

Q ss_pred             eeccCCCCCCCCC----CCEEEEcCCCchHHHHHHHHHHHhh---CCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeE
Q 028304            5 QRVEKPKAETPID----ENEIRITSQGRMRSYITYAMTLLQE---RGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQN   77 (210)
Q Consensus         5 ~rV~kp~~~~p~~----~NeIrVt~k~~irnYV~~A~~lL~~---~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~   77 (210)
                      +.+.++-+..|..    +|+|+|++++.+...+..|.+||++   .+.++|+|+|||+||+||+++|..++++. ++.-.
T Consensus        13 k~irk~P~~k~~s~~~~~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V~   91 (140)
T 3iab_B           13 KRVTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKIE   91 (140)
T ss_dssp             -CCEECCCCCCCCHHHHTTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCEE
T ss_pred             CccCCCCCCcCccccccCceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEEE
Confidence            4454443344433    7999999999999999999999985   26899999999999999999999999974 68888


Q ss_pred             EEEEEEEeeccceecccC------------CCcceeeeeeeEEEEEEe
Q 028304           78 TVIGSTDITDTWEPLEEG------------LLPLETTRHVSMITITLS  113 (210)
Q Consensus        78 t~I~tv~i~d~~eP~eEG------------l~~l~~~R~VS~I~ItLS  113 (210)
                      +.++||.+.|+++|.++.            .+...++|+||+|||.+.
T Consensus        92 V~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy  139 (140)
T 3iab_B           92 VYTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELRIY  139 (140)
T ss_dssp             EEEEEEEEEEECC--------------------CEEEEEEEEEEEEEE
T ss_pred             EEeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEEEe
Confidence            999999999999997654            567889999999999986

>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=98.22  E-value=1.9e-05  Score=64.74  Aligned_cols=91  Identities=19%  Similarity=0.208  Sum_probs=70.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhh-----CCCCeEEEEEcChhHHHHHHHHHHHHHhc----CCceeEEEEEEEEeeccce
Q 028304           20 EIRITSQGRMRSYITYAMTLLQE-----RGSNEIVFKAMGRAINKTVTIVELIKRRI----VGLHQNTVIGSTDITDTWE   90 (210)
Q Consensus        20 eIrVt~k~~irnYV~~A~~lL~~-----~g~~eVvIkA~G~AIsKAV~VAEILKrRi----~GLhQ~t~I~tv~i~d~~e   90 (210)
                      .+.|+++..|+..|+.-.++|+.     ...+.|.|.|.|..|.|++++.||+|.++    ++|||++++.+.....   
T Consensus        46 ~~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~---  122 (158)
T 3iab_A           46 YHGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKR---  122 (158)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC----
T ss_pred             EEEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCC---
Confidence            34499999999999999998851     25689999999999999999999999987    3599999999886542   


Q ss_pred             ecccCCCc-ceeeeeeeEEEEEEeccc
Q 028304           91 PLEEGLLP-LETTRHVSMITITLSKKE  116 (210)
Q Consensus        91 P~eEGl~~-l~~~R~VS~I~ItLSk~~  116 (210)
                         +|-++ ++++-+||-+-+.+++++
T Consensus       123 ---~grNELle~r~~vPILi~~i~~~~  146 (158)
T 3iab_A          123 ---EGRNELQEERLKVPILVTMVSDSE  146 (158)
T ss_dssp             ---------CCCCEEEEEEEEEEESSS
T ss_pred             ---ccccHHHHhhcCCCEEEEEEeccc
Confidence               23223 456778888888888764

>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A

Probab=92.34  E-value=0.025  Score=43.80  Aligned_cols=8  Identities=13%  Similarity=0.372  Sum_probs=3.4

Q ss_pred             eeeeEEEE
Q 028304          103 RHVSMITI  110 (210)
Q Consensus       103 R~VS~I~I  110 (210)
                      +++..+.|
T Consensus        53 ~~lg~v~I   60 (119)
T 1b34_A           53 VQLETLSI   60 (119)
T ss_dssp             EEEEEEEE
T ss_pred             eEcceEEE
Confidence            44444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d2bkya1	89	d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archae	2e-31
d1nfja_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon A	4e-30
d1nh9a_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon M	2e-27
d2bkyx1	86	d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archae	1e-23
d1vm0a_	99	d.68.6.2 (A:) Hypothetical protein At2g34160 {Thal	1e-23

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]} Length = 89

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

 Score =  108 bits (271), Expect = 2e-31
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 19  NEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNT 78
           N + I  +  M +Y+  A+TLL + G +EIV KA GRAI+K V  VE+++ R   L    
Sbjct: 2   NVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF--LPDKI 57

Query: 79  VIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKK 115
            I    +       ++G         VS I I + KK
Sbjct: 58  EIKEIRVGSQVVTSQDG-----RQSRVSTIEIAIRKK 89

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  104 bits (261), Expect = 4e-30
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 18  ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQN 77
           E+ + + ++  M +Y+   +T L E G++E+V KA GRAI++ V + E+++ R       
Sbjct: 1   EHVVYVGNKPVM-NYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNR---FMPG 55

Query: 78  TVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSK 114
             +    I       E+G        +VS I I L+K
Sbjct: 56  VKVKEIKIDTEELESEQG-----RRSNVSTIEIVLAK 87

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 97.9 bits (244), Expect = 2e-27
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 18  ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQN 77
           +N + I  +  M +Y+   +T L     +E++ KA G+AINK V + E+I+ R     ++
Sbjct: 2   DNVVLIGKKPVM-NYVVAVLTQLTSN--DEVIIKARGKAINKAVDVAEMIRNR---FIKD 55

Query: 78  TVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSK 114
             I   +I        +G        +VS I I L+K
Sbjct: 56  IKIKKIEIGTDKVKNPDG-----REVNVSTIEIVLAK 87

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]} Length = 86

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

 Score = 87.9 bits (218), Expect = 1e-23
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 14/98 (14%)

Query: 18  ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQN 77
            NEI +     +  ++   + L  + G +E++ K  GR I+K V +   +K R+    Q 
Sbjct: 2   LNEIVVRKTKNVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQ- 59

Query: 78  TVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKK 115
             + +          E         R +S I + L + 
Sbjct: 60  --LVNVQTGS-----EVR-----DRRRISYILLRLKRV 85

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 88.4 bits (219), Expect = 1e-23
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 12/100 (12%)

Query: 18  ENEIRITSQGR-MRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQ 76
           +N I++++  + +  Y+  A   +Q+   N++   A+G AI   VT+ E++K     + +
Sbjct: 2   KNRIQVSNTKKPLFFYVNLAKRYMQQ--YNDVELSALGMAIATVVTVTEILKNNGFAVEK 59

Query: 77  NTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKE 116
             +    DI D                  + I ITL K E
Sbjct: 60  KIMTSIVDIKDDAR---------GRPVQKAKIEITLVKSE 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d2bkya1	89	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.93
d1nfja_	87	DNA-binding protein AlbA {Archaeon Archaeoglobus f	99.92
d1nh9a_	87	DNA-binding protein AlbA {Archaeon Methanococcus j	99.9
d2bkyx1	86	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.86
d1vm0a_	99	Hypothetical protein At2g34160 {Thale cress (Arabi	99.77

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

Probab=99.93  E-value=2.1e-26  Score=172.14  Aligned_cols=89  Identities=36%  Similarity=0.517  Sum_probs=84.7

Q ss_pred             CCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeeccceecccCCC
Q 028304           18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLL   97 (210)
Q Consensus        18 ~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I~tv~i~d~~eP~eEGl~   97 (210)
                      .|.|+|++++.| |||.+|+.+|++ |.++|+|||+|+||+|||+|||++|+|+  |||.++|+++++.++|+|.+||  
T Consensus         1 ~n~I~IG~Kp~m-nYV~a~~~~l~~-g~~~V~iKArG~aIskAVdVaEiik~R~--l~~~~~i~~i~I~se~~~~~~G--   74 (89)
T d2bkya1           1 SNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF--LPDKIEIKEIRVGSQVVTSQDG--   74 (89)
T ss_dssp             CCEEECCSSCHH-HHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHT--STTTEEEEEEEEEEEEEEETTS--
T ss_pred             CCEEEECCCcHH-HHHHHHHHHHhC-CCCeEEEEEehhhhHHHHHHHHHHHHhc--ccCceEEEEEEeccEEeecCCC--
Confidence            489999999977 999999999986 8999999999999999999999999997  8999999999999999999999  


Q ss_pred             cceeeeeeeEEEEEEecc
Q 028304           98 PLETTRHVSMITITLSKK  115 (210)
Q Consensus        98 ~l~~~R~VS~I~ItLSk~  115 (210)
                         .+|+||+|+|+|+++
T Consensus        75 ---~~r~VS~IeI~L~kk   89 (89)
T d2bkya1          75 ---RQSRVSTIEIAIRKK   89 (89)
T ss_dssp             ---CEEEEEEEEEEEEEC
T ss_pred             ---cEEEEEEEEEEEEcC
Confidence               789999999999984

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=2.2e-25  Score=165.93  Aligned_cols=87  Identities=31%  Similarity=0.495  Sum_probs=81.9

Q ss_pred             CCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeeccceecccCCC
Q 028304           18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLL   97 (210)
Q Consensus        18 ~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I~tv~i~d~~eP~eEGl~   97 (210)
                      +|+|+|++++.| +||.+|+.+|++ |.++|+|||+|+||+|||+|||+||+|+   ||.++|+++++.++|+|.+||  
T Consensus         1 en~I~Ig~Kp~~-~YV~~~~~~l~~-g~~eV~ikArG~aIs~AVdVaEi~k~r~---~~~~~i~~i~i~se~~~~e~g--   73 (87)
T d1nfja_           1 EHVVYVGNKPVM-NYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNRF---MPGVKVKEIKIDTEELESEQG--   73 (87)
T ss_dssp             CEEEECCSSCHH-HHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHHHHT---CTTCEEEEEEEEEEECCCBTT--
T ss_pred             CCEEEEcCCcHH-HHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHHHhc---cCCcEEEEEEEccEEEecCCC--
Confidence            699999999876 999999999986 8999999999999999999999999995   777899999999999999999  


Q ss_pred             cceeeeeeeEEEEEEec
Q 028304           98 PLETTRHVSMITITLSK  114 (210)
Q Consensus        98 ~l~~~R~VS~I~ItLSk  114 (210)
                         .+|+||+|+|+|+|
T Consensus        74 ---~~r~VS~IeI~L~K   87 (87)
T d1nfja_          74 ---RRSNVSTIEIVLAK   87 (87)
T ss_dssp             ---BCCEEEEEEEEEEC
T ss_pred             ---ceeEEEEEEEEEeC
Confidence               67999999999986

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.90  E-value=4.7e-24  Score=158.76  Aligned_cols=86  Identities=31%  Similarity=0.453  Sum_probs=72.6

Q ss_pred             CCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeeccceecccCCC
Q 028304           18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLL   97 (210)
Q Consensus        18 ~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I~tv~i~d~~eP~eEGl~   97 (210)
                      +|+|+|++||.| +||.+|+.+|++ + ++|+|||+|+||+|||+|||++|+|+.+.+   ++.++++.++|.|.+||  
T Consensus         2 en~I~Ig~KP~m-~YV~~~~~~~~~-~-~eV~lKArG~aIsrAVdVaEiik~R~~~~~---~i~~i~i~se~~~~~~g--   73 (87)
T d1nh9a_           2 DNVVLIGKKPVM-NYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDI---KIKKIEIGTDKVKNPDG--   73 (87)
T ss_dssp             CSEEEECSSCHH-HHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTC---EEEEEEEEEEC--------
T ss_pred             CCEEEEcCCCHH-HHHHHHHHHhcc-C-CeEEEEEcchhhhHHHHHHHHHHHhccCCe---EEEEEEecceEEecCCC--
Confidence            699999999977 999999999998 4 899999999999999999999999986554   67778899999999999  


Q ss_pred             cceeeeeeeEEEEEEec
Q 028304           98 PLETTRHVSMITITLSK  114 (210)
Q Consensus        98 ~l~~~R~VS~I~ItLSk  114 (210)
                         .+|+||+|+|+|+|
T Consensus        74 ---~~r~VS~IeI~L~k   87 (87)
T d1nh9a_          74 ---REVNVSTIEIVLAK   87 (87)
T ss_dssp             ----CCCEEEEEEEEEC
T ss_pred             ---ceeEEEEEEEEEeC
Confidence               68999999999986

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

Probab=99.86  E-value=1.2e-21  Score=145.18  Aligned_cols=84  Identities=23%  Similarity=0.338  Sum_probs=73.6

Q ss_pred             CCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeeccceecccCCC
Q 028304           18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLL   97 (210)
Q Consensus        18 ~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I~tv~i~d~~eP~eEGl~   97 (210)
                      .|+|+++.+.++.|||.+|+.+|++ |.++|+|||+|+||+|||++||++|+|+++.||+++|+   +.++     +|  
T Consensus         2 ~nei~~~~~kp~~nYV~a~i~~f~~-g~~eV~iKArG~aIskAVdVaEiir~R~~~~v~i~~I~---i~sE-----~~--   70 (86)
T d2bkyx1           2 LNEIVVRKTKNVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQ---TGSE-----VR--   70 (86)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEE---EEEE-----EE--
T ss_pred             CceEEEEcCCchHHHHHHHHHHHHC-CCCEEEEEEechhhHHHHHHHHHHHHhccCCeEEEEEE---eccc-----cC--
Confidence            5999999999999999999999987 89999999999999999999999999998887666555   4433     23  


Q ss_pred             cceeeeeeeEEEEEEecc
Q 028304           98 PLETTRHVSMITITLSKK  115 (210)
Q Consensus        98 ~l~~~R~VS~I~ItLSk~  115 (210)
                         ..|+||+|+|+|.+.
T Consensus        71 ---~~r~VS~IeI~l~k~   85 (86)
T d2bkyx1          71 ---DRRRISYILLRLKRV   85 (86)
T ss_dssp             ---TTEEEEEEEEEEEEC
T ss_pred             ---CceEEEEEEEEEEec
Confidence               579999999999874

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.77  E-value=9.8e-19  Score=132.49  Aligned_cols=91  Identities=26%  Similarity=0.429  Sum_probs=76.3

Q ss_pred             CCCEEEEcC-CCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeeccceecccC
Q 028304           17 DENEIRITS-QGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEG   95 (210)
Q Consensus        17 ~~NeIrVt~-k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I~tv~i~d~~eP~eEG   95 (210)
                      .+|+|+|+. +.++.+||.+|+.+|++  .++|+|+|+|+||++||+|||+||+|..+.++.++|++.++.++.    +|
T Consensus         1 k~n~i~vs~~KkP~~~YV~~a~~~l~~--~~eV~l~a~G~AI~~aV~vaeil~~r~~~~i~~I~t~s~~~~~~~----~g   74 (99)
T d1vm0a_           1 KKNRIQVSNTKKPLFFYVNLAKRYMQQ--YNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDA----RG   74 (99)
T ss_dssp             CTTEEECCCTTSCHHHHHHHHHHHHHH--HSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC---------
T ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhcc--CCeEEEEecHHHHHHHHHHHHHHHhcCceEEEEEEeeeEEeecCC----CC
Confidence            379999998 55578999999999997  389999999999999999999999998888999999988886542    23


Q ss_pred             CCcceeeeeeeEEEEEEeccc-CC
Q 028304           96 LLPLETTRHVSMITITLSKKE-LN  118 (210)
Q Consensus        96 l~~l~~~R~VS~I~ItLSk~~-LD  118 (210)
                           .+++||.|+|.|.+.| +|
T Consensus        75 -----r~~~vs~IEI~L~K~~~F~   93 (99)
T d1vm0a_          75 -----RPVQKAKIEITLVKSEKFD   93 (99)
T ss_dssp             ------CEEEEEEEEEEEECTTHH
T ss_pred             -----cccccceEEEEEeeCccHH
Confidence                 6899999999999974 44