Citrus Sinensis ID: 028355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MAIADWHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPSPVSSN
Secondary Structure (PSIPRED)
cccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEccccccEEEEEEEEEccccccEEEEEEEcccccEEEcccccEEccccEEEEEEEEEEcccccccccccccccccEEEEEEEEEccccccccHHHHHcccccEEEEEEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccEEEEcccHHcccccccccEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEccccEEEEEEEEEEEccHHccccccccccccEEEEEEEEEcccccccHHHHccccccEEEEEEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
maiadwhsrsnsdkklfgfcpfwqtsttatpsssasstqnlttsssnphvgvpnssrpatkTVSYVARsllpprrrlrldpsnnlyfpyepgkqtrsavrlkntskshvafkfqttapkscymrppggvlapgdsIIATVFKFveapennerqpldqkskdKFKIMSLKvkggidyvpelfdeqkdqVTVERILRVVFLnaerpspvssn
Flexible Loop (DISEMBL)
maiadwhsrsnsdkkLFGFCPFWQTSTTATPSSSASSTQNlttsssnphvgvpnssrpatktvsyvarsllpprrrlrldpsnnlyfpyepgkqtrsavrlkNTSKSHVafkfqttapkscymrPPGGVLAPGDSIIATVFKFVEapennerqpldqkskdkfkIMSLKVKGGIDYVPelfdeqkdqvtvERILRVvflnaerpspvssn
Low Complexity Region (SEG)
MAIADWHSRSNSDKKLFGFCPFWqtsttatpsssasstqnlttsssnpHVGVPNSSRPATKTVSYVArsllpprrrlrldpsnnlYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPSPVSSN
Disordered region (IsUnstruct)
**************KLFGFCPFWQT***********************************************************LYF*********************VAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVE*****************FKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLN**********
Disordered Region (DISOPRED)
***************LFGF**********************************************************RLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAP**********KSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVF************
Disordered Region (DISEMBL)
**********NSDKKLFGFCPFWQTS*********************************TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE********
Disordered Region (DISPRO)
*************KKLFGFCPFWQ****************************************YVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIADWHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPSPVSSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q1ECE0	266	Vesicle-associated protei	yes	no	0.971	0.766	0.674	5e-65
Q8VYN2	295	Vesicle-associated protei	no	no	0.690	0.491	0.746	1e-60
Q8LPQ7	287	Vesicle-associated protei	no	no	0.680	0.498	0.708	1e-55
Q84WW5	239	Vesicle-associated protei	no	no	0.561	0.493	0.370	2e-13
Q9SHC8	239	Vesicle-associated protei	no	no	0.585	0.514	0.350	3e-09
Q8VZ95	256	Vesicle-associated protei	no	no	0.557	0.457	0.330	9e-09
Q9LVU1	220	Vesicle-associated protei	no	no	0.533	0.509	0.308	5e-07
B9DHD7	386	Vesicle-associated protei	no	no	0.504	0.274	0.336	3e-06
Q9SYC9	571	Vesicle-associated protei	no	no	0.757	0.278	0.267	4e-06
O82213	149	Vesicle-associated protei	no	no	0.557	0.785	0.285	7e-06

>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1

 Score =  247 bits (630), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 164/206 (79%), Gaps = 2/206 (0%)

Query: 1   MAIADWHSRSNSDKK-LFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPA 59
           M I D  + S   KK LF  CPFWQ  +T + SS+ +  QN  +   N +  +   S+P 
Sbjct: 1   MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
             T+S VARSLLP RRRLRLDPS+ LYFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct: 61  L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119

Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
           SCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+QPL+QKSK KFKIMSLKVK G++YVPE
Sbjct: 120 SCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPE 179

Query: 180 LFDEQKDQVTVERILRVVFLNAERPS 205
           LFDEQKDQV VE++LRV+F++A+RPS
Sbjct: 180 LFDEQKDQVAVEQVLRVIFIDADRPS 205

May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1

 Score =  232 bits (592), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 130/146 (89%), Gaps = 1/146 (0%)

Query: 62  TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
           +VS VA+S LP +RRL+LDPS  LYFPYEPGKQ RSA+++KNTSKSHVAFKFQTTAPKSC
Sbjct: 93  SVSSVAKSFLPTKRRLKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSC 152

Query: 122 YMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELF 181
           +MRPPG +LAPG++IIATVFKFVE PENNE+ P+DQ+S+ KFKIMSLKVKG +DYVPELF
Sbjct: 153 FMRPPGAILAPGETIIATVFKFVEPPENNEK-PMDQRSRVKFKIMSLKVKGPMDYVPELF 211

Query: 182 DEQKDQVTVERILRVVFLNAERPSPV 207
           DEQKD V+ E+ILRV+FL+ ER +P 
Sbjct: 212 DEQKDDVSKEQILRVIFLDPERSNPA 237

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43 PE=2 SV=1

 Score =  216 bits (549), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/144 (70%), Positives = 124/144 (86%), Gaps = 1/144 (0%)

Query: 62  TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
           ++S VARSLLP +RRL+LDPS  LYFPYEPGKQ RSA+++KNTSKSHVAFKFQTT PKSC
Sbjct: 85  SMSSVARSLLPTKRRLKLDPSAKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSC 144

Query: 122 YMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELF 181
           +MRP G +LAPG+ IIATVFKFVE PENNE+ P++QKS  KFKIMSLK+K   DY+PELF
Sbjct: 145 FMRPAGAILAPGEEIIATVFKFVEPPENNEK-PMEQKSGVKFKIMSLKMKVPTDYMPELF 203

Query: 182 DEQKDQVTVERILRVVFLNAERPS 205
           +EQKD V+ E+++RVVFL+ E P+
Sbjct: 204 EEQKDHVSEEQVMRVVFLDPENPN 227

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 9/127 (7%)

Query: 85  LYFPYEPGKQTRSAVRLKN-TSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143
           L FP+E  KQ+  +++L N T+   VAFK +TT P+   +RP  GV+ PGDS   TV   
Sbjct: 14  LKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTV--- 70

Query: 144 VEAPENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVVFLN 200
               +  +  PLD + KDKF + ++ V  G    + + E+F+++  +V  +  LRVV++ 
Sbjct: 71  --TMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIP 128

Query: 201 AERPSPV 207
           A  PSPV
Sbjct: 129 ANPPSPV 135

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 14/137 (10%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS- 135
           L +DP + L FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P  S 
Sbjct: 6   LTIDPVD-LQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSS 64

Query: 136 -IIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVE 191
            ++ T+    EA       P D + KDKF +  +    G    D   E+F ++      E
Sbjct: 65  EVLVTMQAQKEA-------PADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEE 117

Query: 192 RILRVVFLNAER-PSPV 207
             LRVV++   R PSPV
Sbjct: 118 TKLRVVYVAPPRPPSPV 134

Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 13/130 (10%)

Query: 84  NLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS--IIATVF 141
           +L FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P  +  ++ T+ 
Sbjct: 29  DLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPRSTCEVLVTMQ 88

Query: 142 KFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVVF 198
              EAP        D + KDKF +  +    G+   +  PE+F ++      E  LRV +
Sbjct: 89  AQKEAPS-------DMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTY 141

Query: 199 LNAER-PSPV 207
           +   R PSPV
Sbjct: 142 VAPPRPPSPV 151

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 8/120 (6%)

Query: 83  NNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFK 142
           + L F +E  KQ+   +++ N ++++VAFK +TT+PK  ++RP  GV+ P DS I  V  
Sbjct: 15  DELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRV-- 72

Query: 143 FVEAPENNERQPLDQKSKDKFKIMSLKV--KGGIDYVPE-LFDEQKDQVTVERILRVVFL 199
                +     P D + KDKF + S  V     +D +P+  F +   +   E  L+V ++
Sbjct: 73  ---TLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYI 129

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 16/122 (13%)

Query: 85  LYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGD----SIIATV 140
           L F  +  KQT   V+L NT+  +VAFK +TT+PK   +RP  GV+AP      ++I   
Sbjct: 13  LQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVIMQA 72

Query: 141 FKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVV 197
           FK           P D   KDKF I S  V       D    +F + + +   E  LRV 
Sbjct: 73  FK---------EPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVT 123

Query: 198 FL 199
            +
Sbjct: 124 LV 125

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 24/183 (13%)

Query: 29  ATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFP 88
           ++PS+S S   N +     P VG+ +  R + +               L +DP + + FP
Sbjct: 143 SSPSASVSDKGNASEVFVGPSVGIVDLIRMSDEL--------------LIIDPVD-VQFP 187

Query: 89  YEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPE 148
            E  K+   ++ L N ++++VAFK +TT  K  Y+RP  GV+ P  S    V   ++A  
Sbjct: 188 IELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSS--CEVLVIMQAL- 244

Query: 149 NNERQPLDQKSKDKFKIMSLKVK---GGIDYVPELFDEQKDQVTVERILRVVFLNAER-P 204
             +  P D + +DK       V+      D   E+F ++      E  L+V+++   + P
Sbjct: 245 --KEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLKVMYVTPPQPP 302

Query: 205 SPV 207
           SPV
Sbjct: 303 SPV 305

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L ++P   L FP+E  KQ   ++ L N + ++VAFK +TT   +  +RP  G++ P  + 
Sbjct: 7   LEIEPMY-LQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPKSTC 65

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERI 193
                K +   +  +  P D +S +KF I S+    G+   +   E+F ++   V  E  
Sbjct: 66  -----KVLVTMQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETK 120

Query: 194 LRVVFL 199
           LRV ++
Sbjct: 121 LRVTYV 126

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
224117290	264	predicted protein [Populus trichocarpa]	0.938	0.746	0.724	3e-72
225461302	264	PREDICTED: vesicle-associated protein 4-	0.961	0.765	0.665	5e-69
356543790	263	PREDICTED: vesicle-associated protein 4-	0.938	0.749	0.691	4e-68
312282877	271	unnamed protein product [Thellungiella h	0.966	0.749	0.693	2e-65
225447643	259	PREDICTED: vesicle-associated protein 4-	0.919	0.745	0.641	8e-64
388521835	270	unknown [Lotus japonicus]	0.933	0.725	0.64	8e-64
224116236	235	predicted protein [Populus trichocarpa]	0.695	0.621	0.795	1e-63
18423592	266	membrane-associated mannitol-induced pro	0.971	0.766	0.674	3e-63
8809582	295	membrane associated protein [Arabidopsis	0.971	0.691	0.674	4e-63
363807736	265	uncharacterized protein LOC100794120 [Gl	0.947	0.750	0.650	7e-63

>gi|224117290|ref|XP_002317531.1| predicted protein [Populus trichocarpa] gi|222860596|gb|EEE98143.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 147/203 (72%), Positives = 166/203 (81%), Gaps = 6/203 (2%)

Query: 8   SRSNSDK--KLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNP--HVGVPNSSRPATKTV 63
           +++N D   KLF  CPFWQT+T ++ SSS  +  +    S N   HV V NSS   + TV
Sbjct: 7   NKTNGDHNMKLFRLCPFWQTATNSSTSSSTQNLNHSHKGSGNSVRHVAV-NSSGLKSTTV 65

Query: 64  SYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM 123
           S VARSLLP  RRLRLDP+NNLYFPYEPGKQ RSA+RLKN SKSHVAFKFQTTAPKSCYM
Sbjct: 66  SSVARSLLPAPRRLRLDPANNLYFPYEPGKQVRSAIRLKNRSKSHVAFKFQTTAPKSCYM 125

Query: 124 RPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDE 183
           RPPGG+LAPG+S+IATVFKFVE PENN +Q +DQKS  KFKI+SLKVKGGI+YVPELFDE
Sbjct: 126 RPPGGILAPGESLIATVFKFVEQPENNAKQ-MDQKSNVKFKIVSLKVKGGIEYVPELFDE 184

Query: 184 QKDQVTVERILRVVFLNAERPSP 206
           QKDQVTVERILRVVFL+AE PSP
Sbjct: 185 QKDQVTVERILRVVFLDAEHPSP 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461302|ref|XP_002284424.1| PREDICTED: vesicle-associated protein 4-1 [Vitis vinifera] gi|147780490|emb|CAN60507.1| hypothetical protein VITISV_002788 [Vitis vinifera] gi|302143088|emb|CBI20383.3| unnamed protein product [Vitis vinifera]

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 164/209 (78%), Gaps = 7/209 (3%)

Query: 1   MAIADWHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNS-SRPA 59
           M IAD   + +S+ KL+  CPFWQ+   +    S+SSTQN           V ++ +R +
Sbjct: 1   MGIAD-RRKPSSEGKLWRLCPFWQSGNGSP---SSSSTQNFQQHKIRGRRHVDDTDTRSS 56

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
              VS VARS LP RRRLRLDP+NNLYFPYEPGKQ +SAVR+KNTS+SHVAFKFQTTAPK
Sbjct: 57  PSKVSSVARSFLPTRRRLRLDPANNLYFPYEPGKQVKSAVRMKNTSRSHVAFKFQTTAPK 116

Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNER--QPLDQKSKDKFKIMSLKVKGGIDYV 177
           SCYMRPPGG+LAPG+SIIATVFKF+E PENNE+  + LDQKS  KFKIMSLKVK G+DYV
Sbjct: 117 SCYMRPPGGILAPGESIIATVFKFMEHPENNEKNEKQLDQKSNVKFKIMSLKVKAGMDYV 176

Query: 178 PELFDEQKDQVTVERILRVVFLNAERPSP 206
           PELFDEQK++V+VERIL VVFL+ ERPSP
Sbjct: 177 PELFDEQKEKVSVERILHVVFLDVERPSP 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543790|ref|XP_003540343.1| PREDICTED: vesicle-associated protein 4-2-like [Glycine max]

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 139/201 (69%), Positives = 162/201 (80%), Gaps = 4/201 (1%)

Query: 9   RSNSDKKLFGFC--PFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYV 66
           +S SD K + FC  PFWQT+ T + SSS S   N+   S N    V  SS  ++ TVS V
Sbjct: 7   KSGSDGKGWSFCRMPFWQTTHTPS-SSSMSYMHNVHQQSQNNAQSVDRSSHHSSTTVSSV 65

Query: 67  ARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPP 126
           A+SLLP +RRLRLDPSN LYFPYEPGKQ RSA+ +KNT KSHVAFKFQTTAPKSCYMRPP
Sbjct: 66  AKSLLPTKRRLRLDPSNKLYFPYEPGKQVRSAIAIKNTCKSHVAFKFQTTAPKSCYMRPP 125

Query: 127 GGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKD 186
           GG+LAPG+SIIATVFKFVE PENNE+  +D+KSK KFKIMSLKV+G +DYVPELFDEQ+D
Sbjct: 126 GGILAPGESIIATVFKFVEPPENNEKS-IDKKSKVKFKIMSLKVQGEMDYVPELFDEQRD 184

Query: 187 QVTVERILRVVFLNAERPSPV 207
           QV +E+ILRV+FL+ ERPSPV
Sbjct: 185 QVAIEQILRVMFLDPERPSPV 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282877|dbj|BAJ34304.1| unnamed protein product [Thellungiella halophila]

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 147/212 (69%), Positives = 173/212 (81%), Gaps = 9/212 (4%)

Query: 1   MAIADWHSRSNSDKKLFGFCPFWQ--TSTTATPSSSASSTQNLTTSS----SNPHV-GVP 53
           MAI+D  +RS   +KLF  CPFWQ   +T+++PSS+ + +QN  +S     +N  V GVP
Sbjct: 1   MAISDRQNRSADRQKLFRLCPFWQRRNTTSSSPSSTQNPSQNYRSSRRGHRNNTDVSGVP 60

Query: 54  NSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKF 113
             S  +  TVS VA+SLLP RRRLRLDPS+ LYFPYEPGKQ RSA +LKNTSKSH AFKF
Sbjct: 61  KPS--SALTVSSVAKSLLPARRRLRLDPSSYLYFPYEPGKQVRSATKLKNTSKSHTAFKF 118

Query: 114 QTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGG 173
           QTTAPKSCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+Q L+QKSK KFKIMSLKVK G
Sbjct: 119 QTTAPKSCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQKLNQKSKVKFKIMSLKVKPG 178

Query: 174 IDYVPELFDEQKDQVTVERILRVVFLNAERPS 205
           ++YVPELFDEQKDQVTVER+LRV+FL+A+RPS
Sbjct: 179 VEYVPELFDEQKDQVTVERVLRVIFLDADRPS 210

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447643|ref|XP_002274772.1| PREDICTED: vesicle-associated protein 4-2-like [Vitis vinifera]

 Score =  248 bits (634), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 129/201 (64%), Positives = 159/201 (79%), Gaps = 8/201 (3%)

Query: 8   SRSNSDKKLFGFC--PFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSY 65
            +S S++K++  C  PFWQ++  ++ SS++SS Q++   S +  V        ++  VS+
Sbjct: 6   EKSFSEEKVWSLCKMPFWQSNNASSSSSTSSSLQSVHQQSQSHQV------LQSSNAVSF 59

Query: 66  VARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRP 125
           V +SLLP RRRL LDP N LYFPYEPGKQ RSA+ +KN S+SH+AFKFQTTAPKSCYMRP
Sbjct: 60  VTKSLLPTRRRLHLDPPNKLYFPYEPGKQVRSAISIKNISRSHLAFKFQTTAPKSCYMRP 119

Query: 126 PGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQK 185
           PGG+LAPG+S+IATVFKFVE PENNE+  +DQKSK KFKIMSLKVKG +DYVPELFDEQK
Sbjct: 120 PGGILAPGESLIATVFKFVEHPENNEKPAVDQKSKVKFKIMSLKVKGEMDYVPELFDEQK 179

Query: 186 DQVTVERILRVVFLNAERPSP 206
           DQV  E+ILRVVFL+ ERPSP
Sbjct: 180 DQVAEEQILRVVFLDTERPSP 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521835|gb|AFK48979.1| unknown [Lotus japonicus]

 Score =  248 bits (634), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 128/200 (64%), Positives = 158/200 (79%), Gaps = 4/200 (2%)

Query: 9   RSNSDKKLFGFC--PFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYV 66
           ++ SD K+   C  PFWQT+  ++ S++ SS  ++   +      +  S+   + TVS +
Sbjct: 7   KTGSDVKVRSLCSMPFWQTTRASSSSATGSSMHSVHQQNQVVQ-SLDRSNHQPSSTVSSL 65

Query: 67  ARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPP 126
           A+SLLP  +RLRLDP N LYFPYEPGKQ RSAV +KNT KSHVAFKFQTTAPKSC+MRPP
Sbjct: 66  AKSLLPIWKRLRLDPPNKLYFPYEPGKQVRSAVAIKNTCKSHVAFKFQTTAPKSCFMRPP 125

Query: 127 GGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKD 186
           GG+LAPG+SIIATVFKFVE P+NNE+ P+D+KS+ KFKIMSLKVKG +DYVPELFDEQ+D
Sbjct: 126 GGILAPGESIIATVFKFVEPPDNNEK-PVDKKSRVKFKIMSLKVKGEMDYVPELFDEQRD 184

Query: 187 QVTVERILRVVFLNAERPSP 206
           QV VE+ILRVVFL+ ERPSP
Sbjct: 185 QVAVEQILRVVFLDPERPSP 204

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116236|ref|XP_002317246.1| predicted protein [Populus trichocarpa] gi|222860311|gb|EEE97858.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 117/147 (79%), Positives = 135/147 (91%), Gaps = 1/147 (0%)

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
           + +VS VARSLLP RRRL+LDP++ LYFPYEPGKQ RSA+R+KNTSKSHVAFKFQTTAPK
Sbjct: 31  SNSVSSVARSLLPTRRRLKLDPASKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPK 90

Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
           SC+MRPPG +LAPG+SIIATVFKFVE PENNE+ P++QKSK KFKIMSLKVKG +DYVPE
Sbjct: 91  SCFMRPPGAILAPGESIIATVFKFVELPENNEK-PMEQKSKVKFKIMSLKVKGVMDYVPE 149

Query: 180 LFDEQKDQVTVERILRVVFLNAERPSP 206
           LFDEQKDQV +E+ILRV+FL+ ERPSP
Sbjct: 150 LFDEQKDQVAIEQILRVIFLDPERPSP 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423592|ref|NP_568804.1| membrane-associated mannitol-induced protein [Arabidopsis thaliana] gi|122237442|sp|Q1ECE0.1|VAP41_ARATH RecName: Full=Vesicle-associated protein 4-1; AltName: Full=Plant VAP homolog 4-1; Short=AtPVA41; AltName: Full=Protein MEMBRANE-ASSOCIATED MANNITOL-INDUCED; Short=AtMAMI; AltName: Full=VAMP-associated protein 4-1 gi|107738368|gb|ABF83684.1| At5g54110 [Arabidopsis thaliana] gi|332009069|gb|AED96452.1| membrane-associated mannitol-induced protein [Arabidopsis thaliana]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 164/206 (79%), Gaps = 2/206 (0%)

Query: 1   MAIADWHSRSNSDKK-LFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPA 59
           M I D  + S   KK LF  CPFWQ  +T + SS+ +  QN  +   N +  +   S+P 
Sbjct: 1   MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
             T+S VARSLLP RRRLRLDPS+ LYFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct: 61  L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119

Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
           SCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+QPL+QKSK KFKIMSLKVK G++YVPE
Sbjct: 120 SCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPE 179

Query: 180 LFDEQKDQVTVERILRVVFLNAERPS 205
           LFDEQKDQV VE++LRV+F++A+RPS
Sbjct: 180 LFDEQKDQVAVEQVLRVIFIDADRPS 205

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8809582|dbj|BAA97133.1| membrane associated protein [Arabidopsis thaliana]

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 164/206 (79%), Gaps = 2/206 (0%)

Query: 1   MAIADWHSRSNSDKK-LFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPA 59
           M I D  + S   KK LF  CPFWQ  +T + SS+ +  QN  +   N +  +   S+P 
Sbjct: 1   MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
             T+S VARSLLP RRRLRLDPS+ LYFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct: 61  L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119

Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
           SCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+QPL+QKSK KFKIMSLKVK G++YVPE
Sbjct: 120 SCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPE 179

Query: 180 LFDEQKDQVTVERILRVVFLNAERPS 205
           LFDEQKDQV VE++LRV+F++A+RPS
Sbjct: 180 LFDEQKDQVAVEQVLRVIFIDADRPS 205

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807736|ref|NP_001241916.1| uncharacterized protein LOC100794120 [Glycine max] gi|255637375|gb|ACU19016.1| unknown [Glycine max]

 Score =  245 bits (626), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 132/203 (65%), Positives = 160/203 (78%), Gaps = 4/203 (1%)

Query: 8   SRSNSDKKLFGFC--PFWQTSTTATPSSSASS-TQNLTTSSSNPHVGVPNSSRPATKTVS 64
            +S SD K + FC  PFWQT+ T + S+++ S   N+   + N    V  SS  ++ TVS
Sbjct: 6   EKSGSDGKGWSFCRMPFWQTTHTPSSSTTSMSYMHNVHPQNQNNFQSVDRSSHHSSTTVS 65

Query: 65  YVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMR 124
            +A+SLLP +RRL LDPSN LYFPYEPGKQ RSA+ +KNT KSHVAFKFQTTAPKSCYMR
Sbjct: 66  SMAKSLLPTKRRLHLDPSNKLYFPYEPGKQVRSAIAIKNTCKSHVAFKFQTTAPKSCYMR 125

Query: 125 PPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQ 184
           PP G+LAPG+SIIATVFKFVE PENNE+ P+DQKSK KF IMSLKV+  +DYVPELFDEQ
Sbjct: 126 PPAGILAPGESIIATVFKFVEPPENNEK-PIDQKSKVKFNIMSLKVQSEMDYVPELFDEQ 184

Query: 185 KDQVTVERILRVVFLNAERPSPV 207
           +DQV +E+ILRV+FL+ E+PSPV
Sbjct: 185 RDQVAIEQILRVIFLDPEKPSPV 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2166582	266	MAMI "membrane-associated mann	0.971	0.766	0.567	5.3e-56
UNIPROTKB|Q6YZ10	233	P0473D02.15 "cDNA clone:001-01	0.571	0.515	0.809	3.2e-49
TAIR|locus:2138401	287	AT4G05060 [Arabidopsis thalian	0.566	0.414	0.716	6.4e-44
TAIR|locus:2126921	239	AT4G00170 [Arabidopsis thalian	0.552	0.485	0.376	3e-14
TAIR|locus:2101766	256	VAP27-1 "VAMP/SYNAPTOBREVIN-AS	0.552	0.453	0.328	1.9e-10
TAIR|locus:2055557	239	PVA12 "plant VAP homolog 12" [	0.552	0.485	0.344	3.1e-10
UNIPROTKB|G4N022	285	MGG_06183 "Uncharacterized pro	0.471	0.347	0.304	6.7e-09
TAIR|locus:2171594	220	AT5G47180 [Arabidopsis thalian	0.514	0.490	0.318	7e-09
TAIR|locus:2025585	386	VAP27-2 "vamp/synaptobrevin-as	0.561	0.305	0.333	6e-08
UNIPROTKB|Q5F419	151	VAPA "Uncharacterized protein"	0.447	0.622	0.31	6.8e-08

TAIR|locus:2166582 MAMI "membrane-associated mannitol-induced" [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 117/206 (56%), Positives = 136/206 (66%)

Query:     1 MAIADWHSRSNSDKK-LFGFCPFWXXXXXXXXXXXXXXXXXXXXXXXXXHVGVPNSSRPA 59
             M I D  + S   KK LF  CPFW                         +  +   S+P 
Sbjct:     1 MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60

Query:    60 TKTVSYVAXXXXXXXXXXXXXXXXXXYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
               T+S VA                  YFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct:    61 L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119

Query:   120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
             SCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+QPL+QKSK KFKIMSLKVK G++YVPE
Sbjct:   120 SCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPE 179

Query:   180 LFDEQKDQVTVERILRVVFLNAERPS 205
             LFDEQKDQV VE++LRV+F++A+RPS
Sbjct:   180 LFDEQKDQVAVEQVLRVIFIDADRPS 205

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006970 "response to osmotic stress" evidence=IEP

UNIPROTKB|Q6YZ10 P0473D02.15 "cDNA clone:001-014-D04, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 98/121 (80%), Positives = 112/121 (92%)

Query:    86 YFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVE 145
             +FPYEPGKQ RSAV++KN SKSHVAFKFQTTAPKSC+MRPPGG+LAPG+SIIATVFKFVE
Sbjct:    55 FFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFKFVE 114

Query:   146 APENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPS 205
              PENNE+ PLDQK K KFKI+SLKVKG ++YVPELFDEQK+QV VE+ILRVVFL+AER +
Sbjct:   115 HPENNEK-PLDQKCKVKFKIVSLKVKGPMEYVPELFDEQKNQVAVEQILRVVFLDAERQT 173

Query:   206 P 206
             P
Sbjct:   174 P 174

GO:0009739 "response to gibberellin stimulus" evidence=IMP

TAIR|locus:2138401 AT4G05060 [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 86/120 (71%), Positives = 104/120 (86%)

Query:    86 YFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVE 145
             YFPYEPGKQ RSA+++KNTSKSHVAFKFQTT PKSC+MRP G +LAPG+ IIATVFKFVE
Sbjct:   109 YFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFVE 168

Query:   146 APENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPS 205
              PENNE+ P++QKS  KFKIMSLK+K   DY+PELF+EQKD V+ E+++RVVFL+ E P+
Sbjct:   169 PPENNEK-PMEQKSGVKFKIMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLDPENPN 227

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 47/125 (37%), Positives = 74/125 (59%)

Query:    87 FPYEPGKQTRSAVRLKN-TSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVE 145
             FP+E  KQ+  +++L N T+   VAFK +TT P+   +RP  GV+ PGDS   TV   ++
Sbjct:    16 FPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTVT--MQ 73

Query:   146 APENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVVFLNAE 202
             A    +  PLD + KDKF + ++ V  G    + + E+F+++  +V  +  LRVV++ A 
Sbjct:    74 A---QKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIPAN 130

Query:   203 RPSPV 207
              PSPV
Sbjct:   131 PPSPV 135

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 41/125 (32%), Positives = 64/125 (51%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
             FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P  +    V   ++A
Sbjct:    32 FPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPRST--CEVLVTMQA 89

Query:   147 PENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVVFLNAER 203
                 +  P D + KDKF +  +    G+   +  PE+F ++      E  LRV ++   R
Sbjct:    90 ---QKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPR 146

Query:   204 P-SPV 207
             P SPV
Sbjct:   147 PPSPV 151

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006886 "intracellular protein transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 43/125 (34%), Positives = 64/125 (51%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
             FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P  S  + V   ++A
Sbjct:    15 FPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSS--SEVLVTMQA 72

Query:   147 PENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVVFLNAER 203
                 +  P D + KDKF +  +    G    D   E+F ++      E  LRVV++   R
Sbjct:    73 ---QKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVYVAPPR 129

Query:   204 P-SPV 207
             P SPV
Sbjct:   130 PPSPV 134

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006605 "protein targeting" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

UNIPROTKB|G4N022 MGG_06183 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 137 (53.3 bits), Expect = 6.7e-09, P = 6.7e-09
 Identities = 32/105 (30%), Positives = 58/105 (55%)

Query:    99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQK 158
             ++++N +   +AFK +TTAPK   +RP  G + P   +   V   ++A + +   P D K
Sbjct:    24 LKIRNPNNHPIAFKVKTTAPKQYCVRPNSGRIEPDHEVEVQVL--LQAMKQDP--PADAK 79

Query:   159 SKDKFKIMSLKVKGGIDY--VPELFDEQKDQVTVERILRVVFLNA 201
              +DKF + ++ + G  ++  V +++D  +    VER +RV FL A
Sbjct:    80 CRDKFLVQAVPISGDKEFATVADIWDSVEKSAIVERKIRVTFLPA 124

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 7.0e-09, P = 7.0e-09
 Identities = 37/116 (31%), Positives = 63/116 (54%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
             F +E  KQ+   +++ N ++++VAFK +TT+PK  ++RP  GV+ P DS I  V   ++A
Sbjct:    19 FLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRVT--LQA 76

Query:   147 PENNERQPLDQKSKDKFKIMSLKVKG--GIDYVPE-LFDEQKDQVTVERILRVVFL 199
                    P D + KDKF + S  V     +D +P+  F +   +   E  L+V ++
Sbjct:    77 ---QREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYI 129

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 43/129 (33%), Positives = 65/129 (50%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
             F  +  KQT   V+L NT+  +VAFK +TT+PK   +RP  GV+AP  +   TV   ++A
Sbjct:    15 FAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVI--MQA 72

Query:   147 PENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELFDEQKDQVTVERILRVVFLN-AE 202
                 +  P D   KDKF I S  V       D    +F + + +   E  LRV  +  ++
Sbjct:    73 ---FKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPSD 129

Query:   203 RP--SPVSS 209
              P  SP+++
Sbjct:   130 SPELSPINT 138

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q5F419 VAPA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 31/100 (31%), Positives = 53/100 (53%)

Query:    99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQK 158
             ++L+N S   V FK +TTAP+   +RP  G++ PG S+I +V       +  +  P ++K
Sbjct:    36 LKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSSVIVSVML-----QPFDYDP-NEK 89

Query:   159 SKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVF 198
             SK KF + ++     I  +  ++ E K    ++  LR VF
Sbjct:    90 SKHKFMVQTIYAPPNISDMEAVWKEAKPDELMDSKLRCVF 129

GO:0005198 "structural molecule activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1ECE0	VAP41_ARATH	No assigned EC number	0.6747	0.9714	0.7669	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00110991 hypothetical protein (265 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
pfam00635	109	pfam00635, Motile_Sperm, MSP (Major sperm protein)	2e-26
COG5066	242	COG5066, SCS2, VAMP-associated protein involved in	4e-04

>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain

 Score = 97.4 bits (243), Expect = 2e-26
 Identities = 38/116 (32%), Positives = 50/116 (43%), Gaps = 14/116 (12%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L +DP + L+F     KQ  S + L N S   VAFK +TT PK   +RP  G+L PG+S+
Sbjct: 2   LTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGESV 61

Query: 137 IATVFKFVEAPENNERQPLDQ----KSKDKFKIMSLKVKGGIDYVPELFDEQKDQV 188
             T+           RQP D+      KDKF I   +         E F       
Sbjct: 62  TITIT----------RQPFDKEPGDPKKDKFVIQYTEAPDDAKDAKEAFKRAWKNG 107

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109

>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 82  SNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVF 141
           S    F      +++    ++N S   V FK +TTAPK   +RP  G++ P  ++   V 
Sbjct: 6   SPQTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEV- 64

Query: 142 KFVEAPENNERQPLDQKSKDKFKIMSLKVK 171
             +      E  P D K +DKF I S +  
Sbjct: 65  --ILQGLTEEPAP-DFKCRDKFLIQSYRFD 91

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
COG5066	242	SCS2 VAMP-associated protein involved in inositol	99.94
KOG0439	218	consensus VAMP-associated protein involved in inos	99.93
PF00635	109	Motile_Sperm: MSP (Major sperm protein) domain; In	99.9
PF14874	102	PapD-like: Flagellar-associated PapD-like	98.48
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	96.61
PRK09918	230	putative fimbrial chaperone protein; Provisional	94.65
PF14646	426	MYCBPAP: MYCBP-associated protein family	92.61
PRK15249	253	fimbrial chaperone protein StbB; Provisional	91.06
PRK09926	246	putative chaperone protein EcpD; Provisional	90.89
PF07610	45	DUF1573: Protein of unknown function (DUF1573); In	90.75
PRK15299	227	fimbrial chaperone protein StiB; Provisional	90.28
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	90.23
PRK11385	236	putativi pili assembly chaperone; Provisional	89.41
PRK15295	226	fimbrial assembly chaperone SthB; Provisional	88.74
PRK15246	233	fimbrial assembly chaperone StbE; Provisional	85.99
COG3121	235	FimC P pilus assembly protein, chaperone PapD [Cel	85.85
PRK15208	228	long polar fimbrial chaperone LpfB; Provisional	84.53
PRK15192	234	fimbrial chaperone BcfG; Provisional	84.38
PRK15211	229	fimbrial chaperone protein PefD; Provisional	83.01
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	81.79

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

Probab=99.94  E-value=3.2e-26  Score=194.71  Aligned_cols=117  Identities=24%  Similarity=0.358  Sum_probs=106.2

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEeeecCCCCcCCCCCC
Q 028355           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD  156 (210)
Q Consensus        77 L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~~~~p~~~e~~p~~  156 (210)
                      |.++|  .+.|..++....++.+-|.|++..+|+||||||+|+.||||||.|+|+|++++.|.|+|+   ++..|. .++
T Consensus         3 veisp--~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq---~l~eEp-apd   76 (242)
T COG5066           3 VEISP--QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQ---GLTEEP-APD   76 (242)
T ss_pred             eEecC--ceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEee---ccccCC-CCC
Confidence            67888  588888888899999999999999999999999999999999999999999999999997   555555 678


Q ss_pred             CCCCCeEEEEEEEeCCCC--CChhhhhhccCCCceEEEEEEEEEe
Q 028355          157 QKSKDKFKIMSLKVKGGI--DYVPELFDEQKDQVTVERILRVVFL  199 (210)
Q Consensus       157 ~~~kDKFlVqs~~v~~~~--d~~~~iwk~~~k~~i~e~kLrV~f~  199 (210)
                      .+|+||||||++..+.+.  .++.++|++..+.-|+++||||+|.
T Consensus        77 fKCrdKFLiqs~~~~~~l~g~d~ad~wt~~sk~~i~~rkIrcvys  121 (242)
T COG5066          77 FKCRDKFLIQSYRFDWRLSGSDFADHWTSSSKKPIWTRKIRCVYS  121 (242)
T ss_pred             ccccceeEEEEeccChhhccchHHHHHHhhccccchhhheeEEee
Confidence            999999999999998754  4679999999888899999999998

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.4e-25  Score=190.39  Aligned_cols=132  Identities=39%  Similarity=0.563  Sum_probs=117.0

Q ss_pred             CCCCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEeeecCCCCc
Q 028355           71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENN  150 (210)
Q Consensus        71 ~p~~~~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~~~~p~~~  150 (210)
                      +..+.+|.++|.++|+|..+..+++.+.|+|+|+++.+||||||||+|++|+|||+.|+|.||+++.|.|.++   |. .
T Consensus         3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q---~~-~   78 (218)
T KOG0439|consen    3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQ---PF-E   78 (218)
T ss_pred             ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEec---cC-c
Confidence            3456789999988999999999999999999999999999999999999999999999999999999999886   32 2


Q ss_pred             CCCCCCCCCCCeEEEEEEEeCCC-CCChhhhhhccC--CCceEEEEEEEEEecCCCCCCC
Q 028355          151 ERQPLDQKSKDKFKIMSLKVKGG-IDYVPELFDEQK--DQVTVERILRVVFLNAERPSPV  207 (210)
Q Consensus       151 e~~p~~~~~kDKFlVqs~~v~~~-~d~~~~iwk~~~--k~~i~e~kLrV~f~~p~~~s~~  207 (210)
                      .. |.+.+++|||+||++.++.+ ...+.++|+..+  +..+.+.+|+|.|+.|..+..+
T Consensus        79 ~~-P~d~~~r~kF~v~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~  137 (218)
T KOG0439|consen   79 KS-PPDFKSRHKFLIQSLKAPPPTTRDVVDLWKFQKETPKESFETKLRVVFVAPTETDSV  137 (218)
T ss_pred             cC-chhhcccceEEEEEEecCCccccchhhhccccccccccccceeeEEEeeCCCCCccc
Confidence            23 67788999999999999986 577899999987  7888999999999988655443

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm

Probab=99.90  E-value=2.6e-23  Score=157.42  Aligned_cols=103  Identities=31%  Similarity=0.486  Sum_probs=82.1

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEeeecCCCCcCCCCCC
Q 028355           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD  156 (210)
Q Consensus        77 L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~~~~p~~~e~~p~~  156 (210)
                      |.|+|.+.|.|+++.++...+.|+|+|.++.+||||||||++.+|+|+|+.|+|+||+++.|.|+++   |.....   .
T Consensus         2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~---~~~~~~---~   75 (109)
T PF00635_consen    2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQ---PFDFEP---S   75 (109)
T ss_dssp             CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE----SSSTTT---T
T ss_pred             eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEE---ecccCC---C
Confidence            7899999999999999999999999999999999999999999999999999999999999999996   332221   1


Q ss_pred             CCCCCeEEEEEEEeCCCCC----ChhhhhhccC
Q 028355          157 QKSKDKFKIMSLKVKGGID----YVPELFDEQK  185 (210)
Q Consensus       157 ~~~kDKFlVqs~~v~~~~d----~~~~iwk~~~  185 (210)
                      ...+|||+|+++.++++..    ....+|++.+
T Consensus        76 ~~~~dkf~I~~~~~~~~~~~~~~~~~~~~~~~~  108 (109)
T PF00635_consen   76 NKKKDKFLIQSIVVPDNATDPKKDFKQIWKNGK  108 (109)
T ss_dssp             STSSEEEEEEEEEE-TT-SSSHHHHHCCHHHSS
T ss_pred             CCCCCEEEEEEEEcCCCccchhhhHHHHHhccC
Confidence            2239999999999987653    3566777653

These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=98.48  E-value=2.2e-06  Score=64.15  Aligned_cols=68  Identities=29%  Similarity=0.418  Sum_probs=59.3

Q ss_pred             CcEEecCCCceEeeCC-CCCeeEEEEEEECCCCCcEEEEEccCC--CcceeecCCeeeeCCCCeEEEEEEee
Q 028355           75 RRLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTA--PKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        75 ~~L~i~P~~eL~F~~~-~~k~v~~~LtL~N~S~~~VAFKVKTTa--P~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      ..|.++|. +|.|-.- .|......|+|+|.+..+..|+|+.-.  ...|.|.|..|+|+||++..+.|.+.
T Consensus         2 P~l~v~P~-~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~   72 (102)
T PF14874_consen    2 PTLEVSPK-ELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFS   72 (102)
T ss_pred             CEEEEeCC-EEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEE
Confidence            35899995 9999763 577888999999999999999997533  56899999999999999999999996

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=96.61  E-value=0.041  Score=42.41  Aligned_cols=62  Identities=19%  Similarity=0.367  Sum_probs=50.8

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCC---C------cceeecCCeeeeCCCCeEEEEEEe
Q 028355           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA---P------KSCYMRPPGGVLAPGDSIIATVFK  142 (210)
Q Consensus        77 L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTa---P------~~Y~VRP~~GiL~Pges~~I~Vtl  142 (210)
                      |.|+|. .+.|..   .+....++|+|.++.++.+.+....   .      ..|.|-|+.-.|+||++..|.|..
T Consensus         2 i~i~~t-rii~~~---~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~   72 (122)
T PF00345_consen    2 IQISPT-RIIFNE---SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR   72 (122)
T ss_dssp             EEESSS-EEEEET---TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE
T ss_pred             EEEccE-EEEEeC---CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe
Confidence            678895 888874   2235899999999999999987553   1      268999999999999999999954

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

>PRK09918 putative fimbrial chaperone protein; Provisional

Probab=94.65  E-value=1.4  Score=38.20  Aligned_cols=64  Identities=16%  Similarity=0.175  Sum_probs=49.6

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCC-----cceeecCCeeeeCCCCeEEEEEEee
Q 028355           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAP-----KSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        76 ~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP-----~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      -|.+++. .+.|...   +-...|+|+|.++.++.........     .-|.|-|+.-.|+||+...|.|.+.
T Consensus        25 ~v~l~~t-Rvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~   93 (230)
T PRK09918         25 GMVPETS-VVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILK   93 (230)
T ss_pred             eEEEccE-EEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEEC
Confidence            4788885 7888643   3347999999999877666543221     3599999999999999999999874

>PF14646 MYCBPAP: MYCBP-associated protein family

Probab=92.61  E-value=0.64  Score=43.74  Aligned_cols=67  Identities=19%  Similarity=0.368  Sum_probs=55.3

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEE-EECCCCCcEEEEEccCC------------CcceeecCCeeeeCCCCeEEEEEEee
Q 028355           77 LRLDPSNNLYFPYEPGKQTRSAVR-LKNTSKSHVAFKFQTTA------------PKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        77 L~i~P~~eL~F~~~~~k~v~~~Lt-L~N~S~~~VAFKVKTTa------------P~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      ..+.+.-.|.|...++..+...|. |.|.+..-|-|..+--.            ...|+.....|+|.||++..+.|+.+
T Consensus       231 ~~~~~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~  310 (426)
T PF14646_consen  231 PEVSISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFK  310 (426)
T ss_pred             CccCcceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEe
Confidence            345555689999999987777777 99999999999865322            45688999999999999999999986

>PRK15249 fimbrial chaperone protein StbB; Provisional

Probab=91.06  E-value=6.4  Score=34.75  Aligned_cols=64  Identities=17%  Similarity=0.200  Sum_probs=48.7

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCC------C-----cceeecCCeeeeCCCCeEEEEEEee
Q 028355           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P-----KSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        76 ~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTa------P-----~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      -|.|+|. .+.|+..   .....|+|.|.++.++.-...+..      |     .-|.|-|+.--|+||+...|.|...
T Consensus        29 ~l~l~~T-Rviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~  103 (253)
T PRK15249         29 SVTILGS-RIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN  103 (253)
T ss_pred             EEEeCce-EEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence            4889995 8888632   234799999999887666554321      1     1399999999999999999999974

>PRK09926 putative chaperone protein EcpD; Provisional

Probab=90.89  E-value=1.8  Score=37.99  Aligned_cols=65  Identities=12%  Similarity=0.181  Sum_probs=50.7

Q ss_pred             CcEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCCc----------ceeecCCeeeeCCCCeEEEEEEee
Q 028355           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK----------SCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        75 ~~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP~----------~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      --|.++|. .+.|+.   ++-...|+|.|.++.++.-.......+          -|.|-|+.-.|+||+...|.|...
T Consensus        25 A~i~l~~T-RvI~~~---~~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~   99 (246)
T PRK09926         25 ADIVISGT-RIIYKS---DQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYT   99 (246)
T ss_pred             eeEEeCce-EEEEeC---CCceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeC
Confidence            35889995 888874   233479999999998877666543211          399999999999999999999975

>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini

Probab=90.75  E-value=1  Score=29.33  Aligned_cols=42  Identities=24%  Similarity=0.174  Sum_probs=34.6

Q ss_pred             EEEECCCCCcE-EEEEccCCCcceeecCCeeeeCCCCeEEEEEE
Q 028355           99 VRLKNTSKSHV-AFKFQTTAPKSCYMRPPGGVLAPGDSIIATVF  141 (210)
Q Consensus        99 LtL~N~S~~~V-AFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vt  141 (210)
                      .+|+|.++.++ ..+|+|+ =+-..+......|+||++..|.|+
T Consensus         2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~   44 (45)
T PF07610_consen    2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVT   44 (45)
T ss_pred             EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEE
Confidence            57999999865 6777765 567778888899999999999886

>PRK15299 fimbrial chaperone protein StiB; Provisional

Probab=90.28  E-value=8.4  Score=33.33  Aligned_cols=64  Identities=9%  Similarity=0.198  Sum_probs=48.2

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCC--------CcceeecCCeeeeCCCCeEEEEEEee
Q 028355           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA--------PKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        76 ~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTa--------P~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      -|.++|. .+.|+..   +-...|+|.|.++.++.-......        ..-|.|-|+.-.|+||+...|.|...
T Consensus        23 ~i~l~~T-Rvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~   94 (227)
T PRK15299         23 GINIGTT-RVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT   94 (227)
T ss_pred             eEEECce-EEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence            4788885 7888643   334799999998886655543221        12399999999999999999998874

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=90.23  E-value=1.4  Score=33.73  Aligned_cols=49  Identities=14%  Similarity=0.309  Sum_probs=35.6

Q ss_pred             EEEEEEECCCCCcEEEEEccCCCcceee-cCCee-eeCCCCeEEEEEEeee
Q 028355           96 RSAVRLKNTSKSHVAFKFQTTAPKSCYM-RPPGG-VLAPGDSIIATVFKFV  144 (210)
Q Consensus        96 ~~~LtL~N~S~~~VAFKVKTTaP~~Y~V-RP~~G-iL~Pges~~I~Vtl~~  144 (210)
                      ...|+|.|.+.++.-|.|+...+..+.+ .|... -|+||+...+.|++..
T Consensus        34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~   84 (118)
T PF11614_consen   34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTA   84 (118)
T ss_dssp             EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE
T ss_pred             EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEE
Confidence            4899999999999999999888778888 66455 4999999999999863

>PRK11385 putativi pili assembly chaperone; Provisional

Probab=89.41  E-value=11  Score=32.95  Aligned_cols=64  Identities=19%  Similarity=0.300  Sum_probs=47.4

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccC------------CCcceeecCCeeeeCCCCeEEEEEEee
Q 028355           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT------------APKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        76 ~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTT------------aP~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      -|.+++. .+.|+.   +.....|+|.|.++.++.=..+..            ...-|.|-|+.--|+||+...+.|...
T Consensus        27 ~v~l~~T-RvIy~~---~~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~  102 (236)
T PRK11385         27 GVVVGGT-RFIFPA---DRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRT  102 (236)
T ss_pred             eEEeCce-EEEEcC---CCceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence            4778885 788864   233479999999998744333211            112499999999999999999999885

>PRK15295 fimbrial assembly chaperone SthB; Provisional

Probab=88.74  E-value=9.1  Score=33.20  Aligned_cols=64  Identities=14%  Similarity=0.174  Sum_probs=47.1

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCC-------CcceeecCCeeeeCCCCeEEEEEEee
Q 028355           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA-------PKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        76 ~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTa-------P~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      -|.+++. .+.|+..   .-...|+|.|.++.++.=......       ..-|.|-|+.-.|+||+...|.|...
T Consensus        20 ~i~l~~T-RvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~   90 (226)
T PRK15295         20 SIVVGGT-RLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRS   90 (226)
T ss_pred             cEEeCce-EEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEEC
Confidence            4788885 7888642   234799999999886443322211       22499999999999999999999874

>PRK15246 fimbrial assembly chaperone StbE; Provisional

Probab=85.99  E-value=7.3  Score=34.06  Aligned_cols=64  Identities=17%  Similarity=0.294  Sum_probs=47.8

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCC------C----cceeecCCeeeeCCCCeEEEEEEee
Q 028355           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P----KSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        76 ~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTa------P----~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      -|.|++. .+.|+.   ++....|+|.|.++.++.=......      |    .-|.|-|+.-.|+||+...|.|.+.
T Consensus        11 ~v~l~~T-RvI~~~---~~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~   84 (233)
T PRK15246         11 AVNIDRT-RIIFAS---DDVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLS   84 (233)
T ss_pred             EEEECce-EEEEcC---CCceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEEC
Confidence            3778885 888874   2334799999999886544442221      1    1499999999999999999999974

>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=85.85  E-value=23  Score=30.86  Aligned_cols=65  Identities=14%  Similarity=0.204  Sum_probs=50.8

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCC-------CcceeecCCeeeeCCCCeEEEEEEeee
Q 028355           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA-------PKSCYMRPPGGVLAPGDSIIATVFKFV  144 (210)
Q Consensus        76 ~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTa-------P~~Y~VRP~~GiL~Pges~~I~Vtl~~  144 (210)
                      -+.+++. .+.|+..   +....|+|.|.++.++.-.+..-.       ..-|.|-|+.-.|+||+...|.|.+..
T Consensus        28 ~v~i~~T-RiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~   99 (235)
T COG3121          28 GVVLGGT-RIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTG   99 (235)
T ss_pred             eEEecce-EEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecC
Confidence            4677785 7777643   234799999988889988865442       334999999999999999999999863

>PRK15208 long polar fimbrial chaperone LpfB; Provisional

Probab=84.53  E-value=7.5  Score=33.69  Aligned_cols=64  Identities=13%  Similarity=0.222  Sum_probs=46.1

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCC-cEEEEEccC--CC---cceeecCCeeeeCCCCeEEEEEEee
Q 028355           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTT--AP---KSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        76 ~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~-~VAFKVKTT--aP---~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      -|.+++. .+.|+..   +-...|+|+|.+++ ++.......  ..   .-|.|-|+.-.|+||+...|.|...
T Consensus        22 gv~l~~T-RvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~   91 (228)
T PRK15208         22 GVALSST-RVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNI   91 (228)
T ss_pred             cEEeCce-EEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEEC
Confidence            4788885 8888752   33479999999864 443332221  11   1299999999999999999999874

>PRK15192 fimbrial chaperone BcfG; Provisional

Probab=84.38  E-value=28  Score=30.55  Aligned_cols=62  Identities=13%  Similarity=0.128  Sum_probs=46.2

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccC----------C----CcceeecCCeeeeCCCCeEEEEEE
Q 028355           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT----------A----PKSCYMRPPGGVLAPGDSIIATVF  141 (210)
Q Consensus        76 ~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTT----------a----P~~Y~VRP~~GiL~Pges~~I~Vt  141 (210)
                      -|.++.. .+.|+.   +.-...|+|.|.++.+  |=|++.          .    ..-|.|-|+.-.|+||+...+.|.
T Consensus        23 gi~l~~T-RvIy~~---~~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~   96 (234)
T PRK15192         23 GVVIGGT-RFIYHA---GAPALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVV   96 (234)
T ss_pred             eEEeCce-EEEEcC---CCceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEE
Confidence            3677774 778864   2334799999999886  445541          1    113999999999999999999999


Q ss_pred             ee
Q 028355          142 KF  143 (210)
Q Consensus       142 l~  143 (210)
                      ..
T Consensus        97 ~~   98 (234)
T PRK15192         97 YT   98 (234)
T ss_pred             EC
Confidence            85

>PRK15211 fimbrial chaperone protein PefD; Provisional

Probab=83.01  E-value=20  Score=31.22  Aligned_cols=64  Identities=11%  Similarity=0.110  Sum_probs=47.5

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCC------CcceeecCCeeeeCCCCeEEEEEEee
Q 028355           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------PKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        76 ~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTa------P~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      -|.+++. .+.|+.   +.-...|+|+|.++.++.-......      ..-|.|-|+.-.|+||+...|.|...
T Consensus        23 ~v~l~~T-RvIy~~---~~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~   92 (229)
T PRK15211         23 AFVLNGT-RFIYDE---GRKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKT   92 (229)
T ss_pred             EEEECce-EEEEcC---CCceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEEC
Confidence            3778884 788864   2234799999999887554433211      12499999999999999999999985

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.79  E-value=3.9  Score=31.02  Aligned_cols=52  Identities=17%  Similarity=0.232  Sum_probs=33.1

Q ss_pred             CCeeEEEEEEECCCCCcEEEEEccC-----C---Ccceee--c-----------CCeeeeCCCCeEEEEEEee
Q 028355           92 GKQTRSAVRLKNTSKSHVAFKFQTT-----A---PKSCYM--R-----------PPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        92 ~k~v~~~LtL~N~S~~~VAFKVKTT-----a---P~~Y~V--R-----------P~~GiL~Pges~~I~Vtl~  143 (210)
                      +...+..|+|+|.+++.+.|+|.-.     .   .+.|..  .           |..=.|+||++..|.|++.
T Consensus         7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~   79 (112)
T PF06280_consen    7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTIT   79 (112)
T ss_dssp             -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE
T ss_pred             CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEE
Confidence            3446789999999999999997644     1   122221  1           2233589999999999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
1z9o_A	128	1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp		1e-05
2cri_A	147	Solution Structure Of The Msp Domain Of Mouse Vamp-		1e-05
2rr3_A	130	Solution Structure Of The Complex Between Human Vap		2e-05
1z9l_A	128	1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp		4e-05
3ikk_A	127	Crystal Structure Analysis Of Msp Domain Length = 1		1e-04

>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 97  SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156
           + ++L+N S   V FK +TTAP+   +RP  GV+ PG  +  +V            QP D
Sbjct: 31  TNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM----------LQPFD 80
Query: 157 ----QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVF 198
               +KSK KF + ++     I  +  ++ E K    ++  LR VF
Sbjct: 81  YDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVF 126

>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 99  VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD-- 156
           ++L+N S   V FK +TTAP+   +RP  G++ PG  +  +V            QP D  
Sbjct: 37  LKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM----------LQPFDYD 86
Query: 157 --QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVF 198
             +KSK KF + ++     I  +  ++ E K    ++  LR VF
Sbjct: 87  PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVF 130

>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 97  SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156
           + ++L+N S   V FK +TTAP+   +RP  G++ PG ++  +V            QP D
Sbjct: 30  TNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM----------LQPFD 79
Query: 157 ----QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVF 198
               +KSK KF + ++        +  ++ E K    ++  LR VF
Sbjct: 80  YDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRCVF 125

>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 97  SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156
           + ++L+N S   V FK +TTAP+   +RP  GV+ PG  +  +V            QP D
Sbjct: 31  TNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSV----------XLQPFD 80
Query: 157 ----QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVF 198
               +KSK KF + ++     I     ++ E K     +  LR VF
Sbjct: 81  YDPNEKSKHKFXVQTIFAPPNISDXEAVWKEAKPDELXDSKLRCVF 126

>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 99  VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD-- 156
           ++L N +  +V FK +TTAP+   +RP  G++  G SI  +V            QP D  
Sbjct: 32  LKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVM----------LQPFDYD 81
Query: 157 --QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVF 198
             +KSK KF + S+        +  ++ E K +  ++  LR VF
Sbjct: 82  PNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVF 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
2cri_A	147	Vesicle-associated membrane protein-associated pro	4e-33
1z9l_A	128	Vesicle-associated membrane protein-associated pro	1e-31
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	2e-28
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	3e-21
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	2e-13
1row_A	109	SSP-19, MSP-domain protein like family member; bet	2e-10
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	3e-05
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	3e-04

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147

 Score =  115 bits (289), Expect = 4e-33
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 6/147 (4%)

Query: 64  SYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM 123
           S  +  +    + L LDP ++L F         + ++L+N S   V FK +TTAP+   +
Sbjct: 2   SSGSSGMAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCV 61

Query: 124 RPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDE 183
           RP  G++ PG  +       V           ++KSK KF + ++     I  +  ++ E
Sbjct: 62  RPNSGIIDPGSIVT------VSVMLQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKE 115

Query: 184 QKDQVTVERILRVVFLNAERPSPVSSN 210
            K    ++  LR VF        ++ +
Sbjct: 116 AKPDELMDSKLRCVFEMPNENDKLNDS 142

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128

 Score =  110 bits (277), Expect = 1e-31
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 72  PPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLA 131
              + L LDP ++L F         + ++L+N S   V FK +TTAP+   +RP  GV+ 
Sbjct: 6   KHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVID 65

Query: 132 PGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVE 191
           PG  +       V           ++KSK KF + ++     I  +  ++ E K    ++
Sbjct: 66  PGSIVT------VSVMLQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMD 119

Query: 192 RILRVVF 198
             LR VF
Sbjct: 120 SKLRCVF 126

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152

 Score =  103 bits (258), Expect = 2e-28
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 13/138 (9%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L + P+  LYF      + ++ + L N +K+ VAFK +TTAP+   ++P      PG SI
Sbjct: 19  LHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 78

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVP----ELFDEQKDQVTVER 192
              V              L   ++D+F IM+ +++      P    + + E      +E 
Sbjct: 79  DIIVSPH---------GGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEH 129

Query: 193 ILRVVFLNAERPSPVSSN 210
            LR   + + +P+ +  +
Sbjct: 130 RLRCHTVESSKPNSLMLS 147

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126

 Score = 84.2 bits (208), Expect = 3e-21
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 10/128 (7%)

Query: 73  PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
           P   +   PS  + F      +    +++ N     + +  +TT  +   + PP GVL P
Sbjct: 5   PPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDP 64

Query: 133 GDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI--DYVPELFDEQKDQVTV 190
            + ++  V          +       + D+  I       G    +  E F  Q D +  
Sbjct: 65  KEKVLMAVSCDTFNAATED------LNNDRITIEWTNTPDGAAKQFRREWF--QGDGMVR 116

Query: 191 ERILRVVF 198
            + L + +
Sbjct: 117 RKNLPIEY 124

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 15/111 (13%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           + +DP     +P   G  T     + + S S +AFK +++  +   +RP  G +      
Sbjct: 11  INVDPPT-GNYPATGGNST---HNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 66

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQ 187
              +           R P   K +DK  I   +V          F     Q
Sbjct: 67  KLDIN----------RLPGPPK-EDKIVIQYAEVPAEETDPMAPFKAGAQQ 106

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 19/121 (15%), Positives = 30/121 (24%), Gaps = 15/121 (12%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L  DP      P      T    +L N     + FK +++      + P  G + P  S 
Sbjct: 3   LTADPPA-CTVPAAGVSST---HKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 58

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRV 196
              +           R       +DK  +               F       TV   +  
Sbjct: 59  DVVIT----------RTA-GAPKEDKLVVHFASAPADATDAQAAFVAVAPAGTVTIPMSA 107

Query: 197 V 197
            
Sbjct: 108 T 108

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 122

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 76  RLRLDPSNNLYFPYEPGKQTRSA-VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGD 134
           R  LD  + L F   P K +    + ++N    +  F  +T  P    + P  G L  G+
Sbjct: 23  RAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRP--FSIEPAIGTLNVGE 80

Query: 135 SIIATV 140
           S+   V
Sbjct: 81  SMQLEV 86

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Length = 140

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 93  KQTRSAVRLKNTSKSHVAFKF------QTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEA 146
            Q     ++ N  +    F F                 P  G L P +++  ++  +V  
Sbjct: 44  LQKEK-FQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSK 102

Query: 147 PENNERQPLDQKSKDKFKIMSLKVKGGIDY 176
                    + K +D   I+ L +  G DY
Sbjct: 103 DSVTILNSGEDKIED---ILVLHLDRGKDY 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
2cri_A	147	Vesicle-associated membrane protein-associated pro	100.0
1z9l_A	128	Vesicle-associated membrane protein-associated pro	100.0
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	100.0
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	99.97
1row_A	109	SSP-19, MSP-domain protein like family member; bet	99.96
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	99.95
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	98.17
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	97.88
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	97.83
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	97.34
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	96.33
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	95.14
3q48_A	257	Chaperone CUPB2; IG fold, periplasmic chaperone; 2	91.54
2co7_B	221	SAFB chaperone, putative fimbriae assembly chapero	88.78
2xg5_A	218	PAPD, chaperone protein PAPD; chaperone, chaperone	87.8
1klf_A	205	FIMC chaperone, chaperone protein FIMC; adhesin-ch	86.82
4djm_A	239	DRAB; chaperone, PILI; 2.52A {Escherichia coli}	85.14
1l4i_A	206	SFAE protein; periplasmic chaperone, immunoglobuli	84.29

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=100.00  E-value=7e-36  Score=240.84  Aligned_cols=128  Identities=27%  Similarity=0.430  Sum_probs=115.4

Q ss_pred             CCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEeeecCCCCcCC
Q 028355           73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER  152 (210)
Q Consensus        73 ~~~~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~~~~p~~~e~  152 (210)
                      +.++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|+|+   ++..  
T Consensus        11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~---~~~~--   85 (147)
T 2cri_A           11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQ---PFDY--   85 (147)
T ss_dssp             CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEEC---CCCC--
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEEC---CCcC--
Confidence            45789999988999999999999999999999999999999999999999999999999999999999996   4322  


Q ss_pred             CCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCceEEEEEEEEEecCCCCCC
Q 028355          153 QPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPSP  206 (210)
Q Consensus       153 ~p~~~~~kDKFlVqs~~v~~~~d~~~~iwk~~~k~~i~e~kLrV~f~~p~~~s~  206 (210)
                       .+..+++|||+||++.++++.+++.++|++.++..++++||||+|+.|..+..
T Consensus        86 -~p~~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~p~~~~~  138 (147)
T 2cri_A           86 -DPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNENDK  138 (147)
T ss_dssp             -CTTCCSCCCEEEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEEEECSCCSSC
T ss_pred             -CccccCCCEEEEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEEEecCCCCcc
Confidence             23578999999999999998878899999998899999999999998765443

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A

Probab=100.00  E-value=6.9e-35  Score=229.40  Aligned_cols=121  Identities=30%  Similarity=0.460  Sum_probs=110.6

Q ss_pred             CCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEeeecCCCCcCC
Q 028355           73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER  152 (210)
Q Consensus        73 ~~~~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~~~~p~~~e~  152 (210)
                      ..++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|+++   ++..  
T Consensus         7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~---~~~~--   81 (128)
T 1z9l_A            7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQ---PFDY--   81 (128)
T ss_dssp             CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEEC---CCCC--
T ss_pred             CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEEC---cCcC--
Confidence            35689999988999999999999999999999999999999999999999999999999999999999996   3322  


Q ss_pred             CCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCceEEEEEEEEEe
Q 028355          153 QPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFL  199 (210)
Q Consensus       153 ~p~~~~~kDKFlVqs~~v~~~~d~~~~iwk~~~k~~i~e~kLrV~f~  199 (210)
                       .+..+++|||+||++.++++.+++.++|++.++..++++||||+|.
T Consensus        82 -~p~~~~~dkF~V~s~~~~~~~~~~~~~w~~~~~~~i~e~kLrv~f~  127 (128)
T 1z9l_A           82 -DPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFE  127 (128)
T ss_dssp             -CTTCCCCCEEEEEEEECCTTCSCHHHHHHSCCGGGCEEEEEEEEEE
T ss_pred             -CcccccCCEEEEEEEECCCCcchHHHHhhcCCCCceEEEEEEEEEe
Confidence             2346899999999999999887899999999989999999999995

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2

Probab=100.00  E-value=5e-35  Score=237.59  Aligned_cols=128  Identities=26%  Similarity=0.378  Sum_probs=112.2

Q ss_pred             CCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEeeecCCCCcCC
Q 028355           73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER  152 (210)
Q Consensus        73 ~~~~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~~~~p~~~e~  152 (210)
                      ++++|.|+|.++|+|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||++++|.|+|+   ++ .  
T Consensus        15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq---~~-~--   88 (152)
T 1wic_A           15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPH---GG-L--   88 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEEC---SS-S--
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEec---Cc-c--
Confidence            35789999988999999999999999999999999999999999999999999999999999999999996   33 1  


Q ss_pred             CCCCCCCCCeEEEEEEEeC--CCC--CChhhhhhccCCCceEEEEEEEEEecCC-CCCCCCC
Q 028355          153 QPLDQKSKDKFKIMSLKVK--GGI--DYVPELFDEQKDQVTVERILRVVFLNAE-RPSPVSS  209 (210)
Q Consensus       153 ~p~~~~~kDKFlVqs~~v~--~~~--d~~~~iwk~~~k~~i~e~kLrV~f~~p~-~~s~~~~  209 (210)
                         ...++|||+||++.++  ++.  +++.++|++..+..++++||||+|+++. ++|++++
T Consensus        89 ---~~~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~  147 (152)
T 1wic_A           89 ---TVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLS  147 (152)
T ss_dssp             ---CCCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCC
T ss_pred             ---cCCCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEEECCCCCCCCcccc
Confidence               1378999999999998  443  4688999999888999999999999664 4455443

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A

Probab=99.97  E-value=3.6e-31  Score=208.57  Aligned_cols=118  Identities=15%  Similarity=0.243  Sum_probs=100.7

Q ss_pred             CcEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEeeecCCCCcCCCC
Q 028355           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQP  154 (210)
Q Consensus        75 ~~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~~~~p~~~e~~p  154 (210)
                      ..|.++|.++|.|++++++++++.|+|+|+++++||||||||+|++|+|||++|+|+||+++.|.|+|++   +..+  +
T Consensus         7 ~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~---~~~~--~   81 (126)
T 1msp_A            7 GDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDT---FNAA--T   81 (126)
T ss_dssp             CCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECC---CCGG--G
T ss_pred             CeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecC---CCCC--C
Confidence            4699999999999999999999999999999999999999999999999999999999999999999973   3222  2


Q ss_pred             CCCCCCCeEEEEEEEeCCCC-CChhhhhhccCCCceEEEEEEEEEe
Q 028355          155 LDQKSKDKFKIMSLKVKGGI-DYVPELFDEQKDQVTVERILRVVFL  199 (210)
Q Consensus       155 ~~~~~kDKFlVqs~~v~~~~-d~~~~iwk~~~k~~i~e~kLrV~f~  199 (210)
                      . ...+|||+||++.++++. +++.+.|.+.++ .+..++|+|.|-
T Consensus        82 ~-~~~kDKf~Vq~~~~p~~~~~~~~~~wf~~d~-~~~~k~L~V~Yn  125 (126)
T 1msp_A           82 E-DLNNDRITIEWTNTPDGAAKQFRREWFQGDG-MVRRKNLPIEYN  125 (126)
T ss_dssp             S-CCSSCEEEEEEEECCTTCCSSCCTHHHHSSS-CCEEEEEEEEEE
T ss_pred             C-ccCCCEEEEEEEECCCCcchhhhHHhhcCCC-ceEEEEEEEEec
Confidence            2 345999999999999886 245555555443 578999999984

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.96  E-value=3.4e-28  Score=187.86  Aligned_cols=104  Identities=15%  Similarity=0.173  Sum_probs=91.4

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEeeecCCCCcCCCCCC
Q 028355           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD  156 (210)
Q Consensus        77 L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~~~~p~~~e~~p~~  156 (210)
                      |.|+|. +|.|.++.+   .+.|+|+|+++++||||||||+|++|||||+.|+|+||++++|.|+++   ++        
T Consensus         3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q---~~--------   67 (109)
T 1row_A            3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRT---AG--------   67 (109)
T ss_dssp             CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEEC---SC--------
T ss_pred             EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeC---CC--------
Confidence            899997 699998743   599999999999999999999999999999999999999999999996   32        


Q ss_pred             CCCCCeEEEEEEEeCCCCCChhhhhhccCCCceEEEEEEEE
Q 028355          157 QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVV  197 (210)
Q Consensus       157 ~~~kDKFlVqs~~v~~~~d~~~~iwk~~~k~~i~e~kLrV~  197 (210)
                      ..++|||+||++.++++..++.++|++....  .+.+|++.
T Consensus        68 ~~~~dKflvq~~~~~~~~~d~~~~fk~~~~~--g~~~i~l~  106 (109)
T 1row_A           68 APKEDKLVVHFASAPADATDAQAAFVAVAPA--GTVTIPMS  106 (109)
T ss_dssp             CCEEEEEEEEEEECCTTCSCHHHHHTTCCCC--EEEEEEEE
T ss_pred             CCCCCEEEEEEEECCCCCCCHHHHhhcCCCC--ceEEEEEE
Confidence            2378999999999998877889999997654  56677664

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.95  E-value=4.7e-27  Score=183.52  Aligned_cols=105  Identities=21%  Similarity=0.321  Sum_probs=92.7

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEeeecCCCCcCCCCC
Q 028355           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPL  155 (210)
Q Consensus        76 ~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~~~~p~~~e~~p~  155 (210)
                      ++.++|. +|.|+++.|   .+.|+|+|+++.+||||||||+|++|||||+.|+|+||++++|.|+++   ++     + 
T Consensus        10 ~~~~~p~-~l~F~~~gg---~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q---~~-----~-   76 (116)
T 1m1s_A           10 MINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRL---PG-----P-   76 (116)
T ss_dssp             SEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEEC---SC-----C-
T ss_pred             eeecCCC-eEEEecCCC---EEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeC---CC-----C-
Confidence            6889995 999997643   699999999999999999999999999999999999999999999996   32     1 


Q ss_pred             CCCCCCeEEEEEEEeCCCCCChhhhhhccCCCceEEEEEEEE
Q 028355          156 DQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVV  197 (210)
Q Consensus       156 ~~~~kDKFlVqs~~v~~~~d~~~~iwk~~~k~~i~e~kLrV~  197 (210)
                        .++|||+||++.++++..++.++|++..+  ..+.+|++.
T Consensus        77 --~k~DKflVq~~~~~~d~~d~~~~fk~~~~--~g~~~i~l~  114 (116)
T 1m1s_A           77 --PKEDKIVIQYAEVPAEETDPMAPFKAGAQ--QGEIIVKLI  114 (116)
T ss_dssp             --SCEEEEEEEEEEECTTCCCTTHHHHTTCC--CEEEEEEEE
T ss_pred             --CCCCEEEEEEEECCCCCCCHHHHHhcCCC--CceEEEEEE
Confidence              36899999999999877778999999765  478888764

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.17  E-value=7.3e-06  Score=62.64  Aligned_cols=65  Identities=22%  Similarity=0.295  Sum_probs=55.1

Q ss_pred             CcEEecCCCceEeeCC-CCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEee
Q 028355           75 RRLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        75 ~~L~i~P~~eL~F~~~-~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      ..|.+ | +.|.|..- -+...+..|.|+|.++.++.|++++.  .-|.|.|..|.|+||+++.|.|+..
T Consensus        24 ~~l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~   89 (122)
T 2ys4_A           24 AILDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFE   89 (122)
T ss_dssp             CCCCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEEC
T ss_pred             cEECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEE
Confidence            34555 5 58888663 46677899999999999999999975  4699999999999999999999985

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=4.9e-05  Score=56.36  Aligned_cols=68  Identities=12%  Similarity=0.146  Sum_probs=57.1

Q ss_pred             CcEEecCCCceEeeCC-CCCeeEEEEEEECCCCCcEEEEEccCCC---cceeecCCeeeeCCCCeEEEEEEee
Q 028355           75 RRLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAP---KSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        75 ~~L~i~P~~eL~F~~~-~~k~v~~~LtL~N~S~~~VAFKVKTTaP---~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      ..+.+++. .|.|-.- .+...+..++|+|+++.++.|++.....   ..|.+.|..|.|+||++..|.|++.
T Consensus         8 P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~   79 (112)
T 2e6j_A            8 PKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFS   79 (112)
T ss_dssp             CSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEEC
T ss_pred             CEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEE
Confidence            45888884 7888653 4777889999999999999999964221   4699999999999999999999995

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=97.83  E-value=0.00012  Score=57.85  Aligned_cols=68  Identities=15%  Similarity=0.251  Sum_probs=57.6

Q ss_pred             CcEEecCCCceEeeC-CCCCeeEEEEEEECCCCCcEEEEEccC------CCcceeecCCeeeeCCCCeEEEEEEee
Q 028355           75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTT------APKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        75 ~~L~i~P~~eL~F~~-~~~k~v~~~LtL~N~S~~~VAFKVKTT------aP~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      .-+.+++ .+|.|-. .+++..+..|+|+|++.-+.-|++.-.      .+.-+.|.|..|.|.||+++.|.|++.
T Consensus        25 P~i~v~~-~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~   99 (140)
T 3qbt_B           25 PSLELSR-REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY   99 (140)
T ss_dssp             CCEEESC-CEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred             CceEeee-eeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence            4577888 4999975 367778899999999999999998742      334588999999999999999999986

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=97.34  E-value=0.00083  Score=60.49  Aligned_cols=69  Identities=16%  Similarity=0.254  Sum_probs=57.7

Q ss_pred             CcEEecCCCceEeeC-CCCCeeEEEEEEECCCCCcEEEEEccCCC------cceeecCCeeeeCCCCeEEEEEEeee
Q 028355           75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTTAP------KSCYMRPPGGVLAPGDSIIATVFKFV  144 (210)
Q Consensus        75 ~~L~i~P~~eL~F~~-~~~k~v~~~LtL~N~S~~~VAFKVKTTaP------~~Y~VRP~~GiL~Pges~~I~Vtl~~  144 (210)
                      .-+.|++ .+|.|-. .++...+..|+|+|++.-++.|++.....      .-+.|.|..|.|.||+++.|.|++..
T Consensus        28 P~v~v~~-~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v  103 (366)
T 3qis_A           28 PSLELSR-REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV  103 (366)
T ss_dssp             CCEEESC-SEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred             CeEEEec-CeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence            5678888 4999964 46788899999999999999999975422      22679999999999999999999964

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=96.33  E-value=0.016  Score=48.19  Aligned_cols=65  Identities=15%  Similarity=0.179  Sum_probs=55.7

Q ss_pred             EEecCCCceEeeCC-CCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEee
Q 028355           77 LRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        77 L~i~P~~eL~F~~~-~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      |++++ +.+.|..- .|+.....++++|+++.++-++.-.. |..+.+++..+.|+||++..|.|++.
T Consensus         3 i~~~~-~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~   68 (220)
T 2qsv_A            3 LQVSN-ARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLA   68 (220)
T ss_dssp             EEESC-SEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEEC
T ss_pred             eEEec-CeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEc
Confidence            88999 59999763 45666789999999999999987543 77888899999999999999999995

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=95.14  E-value=0.082  Score=43.80  Aligned_cols=66  Identities=17%  Similarity=0.236  Sum_probs=55.9

Q ss_pred             CcEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEE-EEccCCCcceeecCCeeeeCCCCeEEEEEEee
Q 028355           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAF-KFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        75 ~~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAF-KVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      ..|.++ . .+.|-.-.|...+..++|+|+++.++.+ +|++++ +-..+.+..+.|+||++..|.|++.
T Consensus       118 ~~i~~~-~-~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~  184 (220)
T 2qsv_A          118 GVMELS-T-YLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVD  184 (220)
T ss_dssp             CCEECC-C-EEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEEC
T ss_pred             CEEEEE-e-EEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEe
Confidence            458888 4 8888743377888999999999998877 888765 6888899999999999999999995

>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}

Probab=91.54  E-value=3.9  Score=34.95  Aligned_cols=64  Identities=17%  Similarity=0.238  Sum_probs=47.7

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCC------C----cceeecCCeeeeCCCCeEEEEEEee
Q 028355           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P----KSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        76 ~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTa------P----~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      -|.|++. .+.|+..   +-...|+|+|.++.++.-.+....      |    .-|.|-|+.-.|+||+...|.|...
T Consensus        29 ~v~i~~T-RvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~  102 (257)
T 3q48_A           29 GLIAQGT-RVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYL  102 (257)
T ss_dssp             --CCSCS-EEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEEC
T ss_pred             eEEEcce-EEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEEC
Confidence            4778885 8888743   223799999999988766654322      1    2399999999999999999999874

>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B

Probab=88.78  E-value=3.7  Score=34.19  Aligned_cols=63  Identities=11%  Similarity=0.196  Sum_probs=48.7

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCC-----CcceeecCCeeeeCCCCeEEEEEEee
Q 028355           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA-----PKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        77 L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTa-----P~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      |.+++. .+.|+... +  ...|+|+|.++.++.-.+..-.     ..-|.|-|+.-.|+||+...|.|.+.
T Consensus        14 v~i~~T-RvIy~~~~-k--~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~   81 (221)
T 2co7_B           14 VKLGAT-RVIYHAGT-A--GATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRT   81 (221)
T ss_dssp             CEESCS-EEEEETTS-S--CEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEEC
T ss_pred             EEEcce-EEEEcCCC-C--EEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEEC
Confidence            678885 88887543 2  3699999999887766654321     23499999999999999999999875

>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A

Probab=87.80  E-value=11  Score=31.26  Aligned_cols=63  Identities=16%  Similarity=0.184  Sum_probs=48.5

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCC-cEEEEEccCC-------CcceeecCCeeeeCCCCeEEEEEEee
Q 028355           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTTA-------PKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        77 L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~-~VAFKVKTTa-------P~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      |.+++. .+.|+...   -...|+|+|.++. ++.-.+....       ..-|.|-|+.-.|+||+...|.|.+.
T Consensus         2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~   72 (218)
T 2xg5_A            2 VSLDRT-RAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTT   72 (218)
T ss_dssp             EEESCS-EEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEEC
T ss_pred             cEeCce-EEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEec
Confidence            567785 88887532   3479999999988 7766654322       22499999999999999999999885

>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C

Probab=86.82  E-value=11  Score=30.94  Aligned_cols=62  Identities=10%  Similarity=0.164  Sum_probs=47.7

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCC-cEEEEEccCC-----CcceeecCCeeeeCCCCeEEEEEEe
Q 028355           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTTA-----PKSCYMRPPGGVLAPGDSIIATVFK  142 (210)
Q Consensus        77 L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~-~VAFKVKTTa-----P~~Y~VRP~~GiL~Pges~~I~Vtl  142 (210)
                      |.+++. .+.|+..   +-...|+|+|.++. ++.-.+....     ..-|.|-|+.-.|+||+...|.|..
T Consensus         2 v~l~~T-RvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~   69 (205)
T 1klf_A            2 VALGAT-RVIYPAG---QKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILD   69 (205)
T ss_dssp             EEESCS-EEEEETT---CSEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEE
T ss_pred             eEecce-EEEEeCC---CcEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEe
Confidence            567785 7888753   23479999999987 7766654321     2349999999999999999999987

>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}

Probab=85.14  E-value=6  Score=33.42  Aligned_cols=64  Identities=13%  Similarity=0.161  Sum_probs=48.0

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccC-----CCcceeecCCeeeeCCCCeEEEEEEee
Q 028355           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        76 ~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTT-----aP~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      -|.|++. .+.|+...   -...|+|+|.++.++.-.+...     ...-|.|-|+.-.|+||+...|.|...
T Consensus        23 ~v~l~~T-RvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~   91 (239)
T 4djm_A           23 SLHLGAT-RVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRT   91 (239)
T ss_dssp             CCEESCS-EEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEEC
T ss_pred             eEEEcce-EEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEEC
Confidence            3778885 88886532   2369999999988765544321     123499999999999999999999874

>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1

Probab=84.29  E-value=16  Score=29.92  Aligned_cols=63  Identities=10%  Similarity=0.124  Sum_probs=47.2

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCC-CcEEEEEccCC-----CcceeecCCeeeeCCCCeEEEEEE-ee
Q 028355           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSK-SHVAFKFQTTA-----PKSCYMRPPGGVLAPGDSIIATVF-KF  143 (210)
Q Consensus        77 L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~-~~VAFKVKTTa-----P~~Y~VRP~~GiL~Pges~~I~Vt-l~  143 (210)
                      |.+++. .+.|+...   -...|+|+|.++ .++.-.+....     ..-|.|-|+.-.|+||+...|.|. +.
T Consensus         2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~   71 (206)
T 1l4i_A            2 VALGAT-RVIYPEGQ---KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDAT   71 (206)
T ss_dssp             EEESCS-EEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECC
T ss_pred             eEeCce-EEEEeCCC---cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecC
Confidence            567775 78887532   347999999986 77666554321     234999999999999999999998 63

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d1wica_	152	b.1.11.2 (A:) MSP domain containing protein 2, Mos	4e-27
d1m1sa_	109	b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan	4e-20
d1grwa_	124	b.1.11.2 (A:) Major sperm protein, MSP {Nematode (	9e-20
d1rowa_	107	b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele	9e-18

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.9 bits (246), Expect = 4e-27
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 14/138 (10%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L + P+  LYF      + ++ + L N +K+ VAFK +TTAP+   ++P      PG SI
Sbjct: 19  LHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 78

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVP----ELFDEQKDQVTVER 192
              V              L   ++D+F IM+ +++      P    + + E      +E 
Sbjct: 79  DIIVSPH---------GGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEH 129

Query: 193 ILRVVFLNAERP-SPVSS 209
            LR   + + +P S + S
Sbjct: 130 RLRCHTVESSKPNSLMLS 147

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 79.5 bits (196), Expect = 4e-20
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 15/111 (13%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           + +DP     +P   G  T     + + S S +AFK +++  +   +RP  G +      
Sbjct: 4   INVDP-PTGNYPATGGNST---HNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 59

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQ 187
              +           R P   K +DK  I   +V          F     Q
Sbjct: 60  KLDIN----------RLPGPPK-EDKIVIQYAEVPAEETDPMAPFKAGAQQ 99

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 79.2 bits (195), Expect = 9e-20
 Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 10/129 (7%)

Query: 73  PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
           P   ++  P   + F      +    +++ N+S   + +  +TT  K   + PP GVL P
Sbjct: 3   PPGDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDP 62

Query: 133 GDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI--DYVPELFDEQKDQVTV 190
            ++++  V        +      +  + D+  +       G    +  E F  Q D +  
Sbjct: 63  KEAVLLAVSC------DAFAFGQEDTNNDRITVEWTNTPDGAAKQFRREWF--QGDGMVR 114

Query: 191 ERILRVVFL 199
            + L + + 
Sbjct: 115 RKNLPIEYN 123

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.3 bits (180), Expect = 9e-18
 Identities = 19/116 (16%), Positives = 30/116 (25%), Gaps = 17/116 (14%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L  DP         P     S  +L N     + FK +++      + P  G + P  S 
Sbjct: 1   LTADPPACTV----PAAGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 56

Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELF--DEQKDQVTV 190
              +           R       +DK  +               F        VT+
Sbjct: 57  DVVIT----------RTA-GAPKEDKLVVHFASAPADATDAQAAFVAVAPAGTVTI 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1wica_	152	MSP domain containing protein 2, Mospd2 {Mouse (Mu	100.0
d1grwa_	124	Major sperm protein, MSP {Nematode (Caenorhabditis	99.97
d1m1sa_	109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	99.93
d1rowa_	107	SSP-19 {Nematode (Caenorhabditis elegans) [TaxId:	99.92
d2co7b1	128	Periplasmic chaperone SafB {Salmonella typhimurium	95.16
d1p5va1	141	Chaperone protein Caf1m {Yersinia pestis [TaxId: 6	93.9
d3bwuc1	121	Periplasmic chaperone FimC {Escherichia coli [TaxI	91.02
d2j2za1	124	Pilus chaperone PapD, N-domain {Escherichia coli [	90.43
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	89.97

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-33  Score=226.20  Aligned_cols=124  Identities=26%  Similarity=0.418  Sum_probs=110.6

Q ss_pred             CCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEeeecCCCCcCCC
Q 028355           74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQ  153 (210)
Q Consensus        74 ~~~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~~~~p~~~e~~  153 (210)
                      +++|.|+|.++|+|.+++++++++.|+|+|.++++||||||||+|++|+|||++|+|+||++++|.|+++   +.     
T Consensus        16 ~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~---~~-----   87 (152)
T d1wica_          16 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPH---GG-----   87 (152)
T ss_dssp             CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEEC---SS-----
T ss_pred             CCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEEC---CC-----
Confidence            5789999998999999999999999999999999999999999999999999999999999999999995   22     


Q ss_pred             CCCCCCCCeEEEEEEEeCCCC----CChhhhhhccCCCceEEEEEEEEEecCCCCCC
Q 028355          154 PLDQKSKDKFKIMSLKVKGGI----DYVPELFDEQKDQVTVERILRVVFLNAERPSP  206 (210)
Q Consensus       154 p~~~~~kDKFlVqs~~v~~~~----d~~~~iwk~~~k~~i~e~kLrV~f~~p~~~s~  206 (210)
                       ....++|||+|+++.+++..    +++.++|++..+..++++||+|+|+.+..|.+
T Consensus        88 -~~~~~kdKFli~~~~v~~~~~~~~~d~~~~wk~~~~~~i~~~kLkv~~~~~~~p~s  143 (152)
T d1wica_          88 -LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNS  143 (152)
T ss_dssp             -SCCCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSS
T ss_pred             -CcccCCCcEEEEEEEeCCCCCCCccCHHHHhhcCCcCcEEEEEEEEEEeCCCCCCC
Confidence             23568999999999997654    34789999998899999999999998765433

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.7e-30  Score=202.75  Aligned_cols=122  Identities=16%  Similarity=0.265  Sum_probs=105.3

Q ss_pred             CCCCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEeeecCCCCc
Q 028355           71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENN  150 (210)
Q Consensus        71 ~p~~~~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~~~~p~~~  150 (210)
                      +|++ .|.++|.++|+|++++++.+++.|+|+|+++.+||||||||+|++|+|||++|+|+||+++.|.|+|+   ++..
T Consensus         2 ~p~~-~l~i~P~~~L~F~~p~~~~~~~~l~l~N~s~~~vafKvktt~p~~y~v~P~~G~i~p~~~~~i~V~~~---~~~~   77 (124)
T d1grwa_           2 VPPG-DIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCD---AFAF   77 (124)
T ss_dssp             CCCC-CEEEESSSCEEEESCCSSCEEEEEEEEECSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEEC---CCCG
T ss_pred             cCCC-ceEECCCCeEEEecCCCcEEEEEEEEECCCCCeEEEEEEeCCCceEEEECCCCEECCCCEEEEEEEEe---cCCC
Confidence            4555 49999999999999999999999999999999999999999999999999999999999999999996   3322


Q ss_pred             CCCCCCCCCCCeEEEEEEEeCCCC-CChhhhhhccCCCceEEEEEEEEEec
Q 028355          151 ERQPLDQKSKDKFKIMSLKVKGGI-DYVPELFDEQKDQVTVERILRVVFLN  200 (210)
Q Consensus       151 e~~p~~~~~kDKFlVqs~~v~~~~-d~~~~iwk~~~k~~i~e~kLrV~f~~  200 (210)
                         ....+++|||+||++.++++. ++..+.|+..+ ..+.+++|+|.|.+
T Consensus        78 ---~~~~~~~dkF~v~~~~~p~~~~~~~~~~w~~~~-~~~~~~~l~V~Y~p  124 (124)
T d1grwa_          78 ---GQEDTNNDRITVEWTNTPDGAAKQFRREWFQGD-GMVRRKNLPIEYNP  124 (124)
T ss_dssp             ---GGSCCTTCEEEEEEEECCSSCCSSCCGGGGTSS-SCCEEEEEEEEEEC
T ss_pred             ---CCcccCCceEEEEEEECCCccHHHHHHHHhccC-CceEEEEEEEEeCC
Confidence               234678999999999998764 45667777664 46789999999964

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=1.6e-25  Score=170.93  Aligned_cols=98  Identities=20%  Similarity=0.287  Sum_probs=87.5

Q ss_pred             CcEEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEeeecCCCCcCCCC
Q 028355           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQP  154 (210)
Q Consensus        75 ~~L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~~~~p~~~e~~p  154 (210)
                      .+|.|+|. +|+|+++.|   .+.++|+|.++.+||||||||+|++|+|+|++|+|+||+++.|.|+++   ++      
T Consensus         2 ~~L~i~P~-~l~F~~~~g---~~~~~l~N~s~~~vafKiktt~~~~y~V~P~~G~I~P~~~~~i~I~~~---~~------   68 (109)
T d1m1sa_           2 SMINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRL---PG------   68 (109)
T ss_dssp             CSEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEEC---SC------
T ss_pred             ceEEEeCC-EEEeecCCC---cEEEEEECCCCCcEEEEEEcCCCCeEEEeCCeeEECCCCeEEEEEEeC---CC------
Confidence            37999995 999987654   479999999999999999999999999999999999999999999995   33      


Q ss_pred             CCCCCCCeEEEEEEEeCCCCCChhhhhhccCCC
Q 028355          155 LDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQ  187 (210)
Q Consensus       155 ~~~~~kDKFlVqs~~v~~~~d~~~~iwk~~~k~  187 (210)
                        ...+|||+|+++.++++.+++.++|++....
T Consensus        69 --~~~~DKf~I~~~~~~~~~~d~~~~fk~~~~~   99 (109)
T d1m1sa_          69 --PPKEDKIVIQYAEVPAEETDPMAPFKAGAQQ   99 (109)
T ss_dssp             --CSCEEEEEEEEEEECTTCCCTTHHHHTTCCC
T ss_pred             --CCCCCEEEEEEEECCCCCcCHHHHHhcCCCC
Confidence              2368999999999999988889999998665

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=6.2e-25  Score=167.37  Aligned_cols=104  Identities=15%  Similarity=0.184  Sum_probs=89.0

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCCcceeecCCeeeeCCCCeEEEEEEeeecCCCCcCCCCCC
Q 028355           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD  156 (210)
Q Consensus        77 L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~~~~p~~~e~~p~~  156 (210)
                      |.+||. +|.|+...   ..+.|+|+|.++.+||||||||+|++|+|+|+.|+|+||+++.|.|+++   |+        
T Consensus         1 l~~dP~-~~~f~~~~---g~~~~~l~N~s~~~vafKvKtt~~~~y~V~P~~G~i~P~~~~~I~I~~~---~~--------   65 (107)
T d1rowa_           1 LTADPP-ACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRT---AG--------   65 (107)
T ss_dssp             CEEESS-SEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEEC---SC--------
T ss_pred             CeeCCC-cceeeCCC---CeEEEEEEcCCCCeEEEEEEcCCCCeEEEECCEEEECCCCEEEEEEEeC---CC--------
Confidence            679997 89998653   4589999999999999999999999999999999999999999999985   33        


Q ss_pred             CCCCCeEEEEEEEeCCCCCChhhhhhccCCCceEEEEEEEE
Q 028355          157 QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVV  197 (210)
Q Consensus       157 ~~~kDKFlVqs~~v~~~~d~~~~iwk~~~k~~i~e~kLrV~  197 (210)
                      ...+|||+||+++++++.++..++|++....  .+..|++.
T Consensus        66 ~~~~DKf~I~~~~~~~~~~d~~~~fk~~~~~--~~~~ikl~  104 (107)
T d1rowa_          66 APKEDKLVVHFASAPADATDAQAAFVAVAPA--GTVTIPMS  104 (107)
T ss_dssp             CCEEEEEEEEEEECCTTCSCHHHHHTTCCCC--EEEEEEEE
T ss_pred             CCCCCEEEEEEEECCCCCcCHHHHhhcCCCC--CcEEEEEE
Confidence            2368999999999999988899999987544  34455543

>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone SafB
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.16  E-value=0.19  Score=36.71  Aligned_cols=63  Identities=10%  Similarity=0.194  Sum_probs=49.1

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccC-----CCcceeecCCeeeeCCCCeEEEEEEee
Q 028355           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        77 L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTT-----aP~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      |.|+.. .+.|....   -...|+|+|.++.++...++..     ....|.|-|+.-.|+||+...|.|...
T Consensus         7 v~l~~T-Rvi~~~~~---~~~sv~l~N~~~~p~lvQ~~v~~~~~~~~~~fivtPPl~rl~p~~~q~vRI~~~   74 (128)
T d2co7b1           7 VKLGAT-RVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRT   74 (128)
T ss_dssp             CEESCS-EEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEEC
T ss_pred             EEECCe-EEEEcCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEeCceeEECCCCceEEEEEec
Confidence            567885 88886432   3479999999999877766432     233599999999999999999999974

>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Chaperone protein Caf1m
species: Yersinia pestis [TaxId: 632]

Probab=93.90  E-value=0.83  Score=33.72  Aligned_cols=63  Identities=16%  Similarity=0.196  Sum_probs=49.4

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCCcEEEEEccCCC-------cceeecCCeeeeCCCCeEEEEEEee
Q 028355           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAP-------KSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        77 L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~~VAFKVKTTaP-------~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      |.|+.. .+.|+.. .  -...|+|+|.++.++...+.....       .-|.|-|+.-.|+||+...|.|...
T Consensus         8 v~l~~T-RvIy~~~-~--~~~s~~v~N~~~~p~lvQ~wv~~~~~~~~~~~pfivtPPl~rl~p~~~~~lRI~~~   77 (141)
T d1p5va1           8 VTIGES-RIIYPLD-A--AGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQA   77 (141)
T ss_dssp             EEESCS-EEEEETT-C--SCEEEEEEECSSSCEEEEEEECC---------CEEEESSEEEECTTCEEEEEEEEC
T ss_pred             eEeCcc-EEEEcCC-C--cEEEEEEEeCCCCCEEEEEEEEcCCCCcCCCCCeEEcCCeEEECCCCceEEEEEec
Confidence            677775 7888743 2  236899999999999888865432       2299999999999999999999863

>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone FimC
species: Escherichia coli [TaxId: 562]

Probab=91.02  E-value=1.2  Score=31.82  Aligned_cols=63  Identities=10%  Similarity=0.169  Sum_probs=45.1

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCC-cEEEEE-----ccCCCcceeecCCeeeeCCCCeEEEEEEee
Q 028355           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKF-----QTTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        77 L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~-~VAFKV-----KTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      +.++.. .+.|+..   +-...++|+|.+++ ++.-..     ..+....|.|-|+.-.|+||+...|.|...
T Consensus         2 i~l~~T-RvI~~~~---~~~~~~~i~N~~~~~~~lvq~wv~~~d~~~~~~fivtPPl~rl~p~~~q~vRI~~~   70 (121)
T d3bwuc1           2 VALGAT-RVIYPAG---QKQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDA   70 (121)
T ss_dssp             EEESCS-EEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCCCSSEEEESSEEEEESSEEEEEEEEEC
T ss_pred             eeECce-EEEEcCC---CceEEEEEEECCCCccEEEEEEEEcCCCCcCCCeeECCCcEEeCCCCeeEEEEEec
Confidence            456664 7777632   23489999998765 443222     223445699999999999999999999874

>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Pilus chaperone PapD, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.43  E-value=1.9  Score=30.83  Aligned_cols=63  Identities=16%  Similarity=0.196  Sum_probs=45.3

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCC-cEEEEEccCC-------CcceeecCCeeeeCCCCeEEEEEEee
Q 028355           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTTA-------PKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        77 L~i~P~~eL~F~~~~~k~v~~~LtL~N~S~~-~VAFKVKTTa-------P~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      +.|+.. .+.|+..   +-...++|+|.+++ ++.-......       ..-|.|-|+.-.|+||+...|.|.+.
T Consensus         2 i~l~~T-RvI~~~~---~~~~~i~v~N~~~~~p~LvQswv~~~~~~~~~~~~fivtPPl~rl~p~~~~~vRI~~~   72 (124)
T d2j2za1           2 VSLDRT-RAVFDGS---EKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTT   72 (124)
T ss_dssp             EEESCS-EEEEETT---SSEEEEEEEECCSSSCEEEEEEEECTTSCEESSSSEEEECSEEEECTTCEEEEEEEEC
T ss_pred             eEeCCc-EEEEeCC---CCEEEEEEEeCCCCccEEEEEEEecCCCCccccCCeEECCCeEEECCCCcceEEEEEc
Confidence            556774 7888742   23479999998775 5544433321       12399999999999999999999974

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=89.97  E-value=0.61  Score=32.73  Aligned_cols=54  Identities=26%  Similarity=0.241  Sum_probs=46.3

Q ss_pred             CCCCeeEEEEEEECCCCCcE-EEEEccCCCcceeecCCeeeeCCCCeEEEEEEee
Q 028355           90 EPGKQTRSAVRLKNTSKSHV-AFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF  143 (210)
Q Consensus        90 ~~~k~v~~~LtL~N~S~~~V-AFKVKTTaP~~Y~VRP~~GiL~Pges~~I~Vtl~  143 (210)
                      .+|+.+...++|+|.....+ ..++....|.-+.+.|..--|+||++..+.+.+.
T Consensus        14 ~pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~~L~pG~s~~~~~~Vt   68 (103)
T d1w8oa1          14 EPGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVEPLMPGRQAKGQVTIT   68 (103)
T ss_dssp             CTTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEECCBCTTCEEEEEEEEE
T ss_pred             CCCCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcceeeCCCCcEEEEEEEE
Confidence            46889999999999988755 3466667899999999999999999999999985