Citrus Sinensis ID: 028356

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWTGLV
ccccccEEEEcccEEEccccccEEEEEEEEEcccccEEEEEEEEccccEEEEEcccEEEccccEEEEEEEEccccccccccccccEEEEEEEEEccccccccHHHHHHccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
cccccEEEEcccccccccccEEEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEcccccEEEEEEEcccccccccccccccEEEEEEEEcccccHHHccHHHHHHcccccHEHcEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
mstgellsieplelkfpfelkKQISCSlqlsnktdnYVAFKVkttnpkkycvrpntgivlprstCDIIVTMQaqkeappdmqckdkfllqsvktndgttakDINAEMFNKEAGHVVEECKLRViyvsppqppspvpegseegssprgsvsdnghvnSAEFAAAARAFTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWTGLV
mstgellsieplELKFPFELKKQISCslqlsnktdnYVAFkvkttnpkkycvrpntgivlprsTCDIIVTMQAQkeappdmqCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISklkdeknnavqqnnklrqdlwtglv
MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYvsppqppspvpegseegssprgsvsDNGHVNSaefaaaarafterIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWTGLV
********IEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQ*************KFLLQSV********KDINAEMFNKEAGHVVEECKLRVIYV************************************************************************************
**TGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIY******************************************************************************DLW****
MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPP*********************DNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLWTGLV
****ELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPP***********************************************STEARALISKLKDEKNNAVQQNNKLRQDLWTGLV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKxxxxxxxxxxxxxxxxxxxxxxxxxxxxLWTGLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query210 2.2.26 [Sep-21-2011]
Q9SHC8239 Vesicle-associated protei yes no 0.957 0.841 0.699 6e-81
Q8VZ95256 Vesicle-associated protei no no 0.966 0.792 0.692 3e-80
Q84WW5239 Vesicle-associated protei no no 0.957 0.841 0.626 9e-69
Q9SYC9 571 Vesicle-associated protei no no 0.738 0.271 0.647 4e-57
O82213149 Vesicle-associated protei no no 0.6 0.845 0.682 4e-46
Q9LVU1220 Vesicle-associated protei no no 0.819 0.781 0.433 4e-40
B9DHD7 386 Vesicle-associated protei no no 0.685 0.373 0.554 4e-39
O60119 383 Vesicle-associated membra yes no 0.847 0.464 0.340 3e-17
Q10484 319 Uncharacterized protein C no no 0.528 0.347 0.362 9e-14
Q16943260 Vesicle-associated membra N/A no 0.680 0.55 0.318 9e-13
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function desciption
 Score =  300 bits (767), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 142/203 (69%), Positives = 174/203 (85%), Gaps = 2/203 (0%)

Query: 3   TGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPR 62
           + ELL+I+P++L+FPFELKKQISCSL L NKTDNYVAFKVKTTNPKKYCVRPNTG+V PR
Sbjct: 2   SNELLTIDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPR 61

Query: 63  STCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLR 122
           S+ +++VTMQAQKEAP D+QCKDKFLLQ V  + G T KD+  EMF+KEAGH VEE KLR
Sbjct: 62  SSSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLR 121

Query: 123 VIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARA 182
           V+YV+PP+PPSPV EGSEEGSSPR SVSDNG  N+++F AA R   +R++ QD S+EARA
Sbjct: 122 VVYVAPPRPPSPVREGSEEGSSPRASVSDNG--NASDFTAAPRFSADRVDAQDNSSEARA 179

Query: 183 LISKLKDEKNNAVQQNNKLRQDL 205
           L++KL +EKN+AVQ NN+L+Q+L
Sbjct: 180 LVTKLTEEKNSAVQLNNRLQQEL 202
Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function description
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 Back     alignment and function description
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function description
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function description
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 Back     alignment and function description
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2 Back     alignment and function description
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein OS=Aplysia californica PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query210
356495613241 PREDICTED: vesicle-associated protein 1- 0.976 0.850 0.814 7e-96
356540611241 PREDICTED: vesicle-associated protein 1- 0.976 0.850 0.819 3e-95
224074143241 predicted protein [Populus trichocarpa] 0.976 0.850 0.873 2e-94
388501352239 unknown [Lotus japonicus] 0.966 0.849 0.804 3e-94
255576068240 vesicle-associated membrane protein, put 0.976 0.854 0.868 4e-94
351723095237 uncharacterized protein LOC100527687 [Gl 0.976 0.864 0.853 2e-91
224137932241 predicted protein [Populus trichocarpa] 0.976 0.850 0.848 9e-91
356563322241 PREDICTED: vesicle-associated protein 1- 0.976 0.850 0.843 1e-90
449469394241 PREDICTED: vesicle-associated protein 1- 0.976 0.850 0.853 4e-90
356496332241 PREDICTED: vesicle-associated protein 1- 0.976 0.850 0.760 5e-90
>gi|356495613|ref|XP_003516669.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max] Back     alignment and taxonomy information
 Score =  355 bits (911), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 167/205 (81%), Positives = 187/205 (91%)

Query: 1   MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVL 60
           M+TG+LLSIEPLELKF FELKKQISCSL LSNKTD+Y+AFKVKTTNPKKYCVRPNTG+V+
Sbjct: 1   MTTGDLLSIEPLELKFLFELKKQISCSLILSNKTDSYIAFKVKTTNPKKYCVRPNTGVVM 60

Query: 61  PRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECK 120
           P+S CD+IVTMQAQK+AP DMQCKDKFLLQSVK +DGTTAKDI AEMFNKE GHVVEECK
Sbjct: 61  PQSACDVIVTMQAQKDAPADMQCKDKFLLQSVKVDDGTTAKDITAEMFNKEVGHVVEECK 120

Query: 121 LRVIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEA 180
           LRV+YVSP QPPSPVPEGSEEGSSPRGSVSDNG+ + A+ AA ARAF ER E  +KS EA
Sbjct: 121 LRVVYVSPTQPPSPVPEGSEEGSSPRGSVSDNGNASGADSAAVARAFVERHEGPEKSAEA 180

Query: 181 RALISKLKDEKNNAVQQNNKLRQDL 205
           +ALIS+L +EKNNA+QQNNKLRQ+L
Sbjct: 181 KALISRLAEEKNNAIQQNNKLRQEL 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356540611|ref|XP_003538781.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max] Back     alignment and taxonomy information
>gi|224074143|ref|XP_002304271.1| predicted protein [Populus trichocarpa] gi|222841703|gb|EEE79250.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388501352|gb|AFK38742.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255576068|ref|XP_002528929.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223531631|gb|EEF33458.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|351723095|ref|NP_001235987.1| uncharacterized protein LOC100527687 [Glycine max] gi|255632954|gb|ACU16831.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224137932|ref|XP_002326476.1| predicted protein [Populus trichocarpa] gi|222833798|gb|EEE72275.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356563322|ref|XP_003549913.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max] Back     alignment and taxonomy information
>gi|449469394|ref|XP_004152405.1| PREDICTED: vesicle-associated protein 1-2-like [Cucumis sativus] gi|449513273|ref|XP_004164281.1| PREDICTED: vesicle-associated protein 1-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356496332|ref|XP_003517022.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query210
TAIR|locus:2101766256 VAP27-1 "VAMP/SYNAPTOBREVIN-AS 0.966 0.792 0.580 4e-58
TAIR|locus:2055557239 PVA12 "plant VAP homolog 12" [ 0.957 0.841 0.571 5.9e-57
TAIR|locus:2126921239 AT4G00170 [Arabidopsis thalian 0.595 0.523 0.714 2.6e-53
TAIR|locus:2061461149 AT2G23830 [Arabidopsis thalian 0.595 0.838 0.68 7.3e-43
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.576 0.55 0.586 4e-39
TAIR|locus:2008231 637 AT1G51270 [Arabidopsis thalian 0.576 0.189 0.628 7.9e-39
TAIR|locus:2025585 386 VAP27-2 "vamp/synaptobrevin-as 0.561 0.305 0.618 7.3e-38
UNIPROTKB|Q6P7K7242 vapb "Putative uncharacterized 0.557 0.483 0.344 2e-16
UNIPROTKB|G4N022285 MGG_06183 "Uncharacterized pro 0.561 0.414 0.35 2.3e-16
POMBASE|SPBC16G5.05c 383 SPBC16G5.05c "VAP family prote 0.523 0.287 0.416 2.6e-16
TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 119/205 (58%), Positives = 144/205 (70%)

Query:     1 MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVL 60
             MS  ELL++EPL+L+FPFELKKQISCSL L+NKTDN VAFKVKTTNPKKYCVRPNTG+VL
Sbjct:    17 MSNSELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVL 76

Query:    61 PRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECK 120
             PRSTC+++VTMQAQKEAP DMQCKDKFLLQ V  + G TAK++  EMF+KEAGH VEE K
Sbjct:    77 PRSTCEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETK 136

Query:   121 LRVIYXXXXXXXXXXXXXXXXXXXXXXXXXDNGHVNSXXXXXXXXXXXXXIEHQDKSTEA 180
             LRV Y                         DNGH +                HQ+ ++EA
Sbjct:   137 LRVTYVAPPRPPSPVHEGSEEGSSPRASVSDNGHGSEFSFERFIVDNKAG--HQENTSEA 194

Query:   181 RALISKLKDEKNNAVQQNNKLRQDL 205
             RALI+KL +EK +A+Q NN+L+++L
Sbjct:   195 RALITKLTEEKQSAIQLNNRLQREL 219
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0046907 "intracellular transport" evidence=TAS
GO:0000326 "protein storage vacuole" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0016021 "integral to membrane" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006605 "protein targeting" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006886 "intracellular protein transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007033 "vacuole organization" evidence=RCA
GO:0010359 "regulation of anion channel activity" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P7K7 vapb "Putative uncharacterized protein MGC76271" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|G4N022 MGG_06183 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPBC16G5.05c SPBC16G5.05c "VAP family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SHC8VAP12_ARATHNo assigned EC number0.69950.95710.8410yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_III0553
hypothetical protein (242 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query210
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 2e-33
COG5066242 COG5066, SCS2, VAMP-associated protein involved in 7e-20
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score =  115 bits (290), Expect = 2e-33
 Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 6   LLSIEP-LELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRST 64
           LL+I+P   L F     KQ + +L L+N +D  VAFKVKTTNPK+Y VRPN GI+ P  +
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGES 60

Query: 65  CDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDG-TTAKDINAEMFNKEAG 113
             I +T Q   + P D + KDKF++Q  +  D    AK+     +   A 
Sbjct: 61  VTITITRQPFDKEPGDPK-KDKFVIQYTEAPDDAKDAKEAFKRAWKNGAP 109

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 210
KOG0439218 consensus VAMP-associated protein involved in inos 99.96
COG5066242 SCS2 VAMP-associated protein involved in inositol 99.95
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.91
PF14874102 PapD-like: Flagellar-associated PapD-like 98.64
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 97.14
PF14646426 MYCBPAP: MYCBP-associated protein family 94.69
PRK09918230 putative fimbrial chaperone protein; Provisional 94.44
PRK11385236 putativi pili assembly chaperone; Provisional 93.85
PRK09926246 putative chaperone protein EcpD; Provisional 93.8
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 93.78
PRK15249253 fimbrial chaperone protein StbB; Provisional 93.5
PRK15299227 fimbrial chaperone protein StiB; Provisional 93.35
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 93.08
PRK15211229 fimbrial chaperone protein PefD; Provisional 93.04
PRK15295226 fimbrial assembly chaperone SthB; Provisional 93.0
PRK15246233 fimbrial assembly chaperone StbE; Provisional 92.32
PRK15290243 lfpB fimbrial chaperone protein; Provisional 91.48
PRK15192234 fimbrial chaperone BcfG; Provisional 90.23
PRK15208228 long polar fimbrial chaperone LpfB; Provisional 89.43
COG3121235 FimC P pilus assembly protein, chaperone PapD [Cel 87.7
PRK15188228 fimbrial chaperone protein BcfB; Provisional 87.44
PF06280112 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 87.14
PRK15195229 fimbrial chaperone protein FimC; Provisional 87.07
PF10482120 CtIP_N: Tumour-suppressor protein CtIP N-terminal 86.08
PRK15254239 fimbrial chaperone protein StdC; Provisional 85.83
PRK1542279 septal ring assembly protein ZapB; Provisional 85.46
PRK15218226 fimbrial chaperone protein PegB; Provisional 83.44
TIGR03079399 CH4_NH3mon_ox_B methane monooxygenase/ammonia mono 82.18
smart00809104 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin 81.64
PRK15224237 pili assembly chaperone protein SafB; Provisional 81.19
PRK15233246 putative fimbrial chaperone protein SefB; Provisio 80.47
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=99.96  E-value=8.8e-29  Score=209.11  Aligned_cols=136  Identities=46%  Similarity=0.718  Sum_probs=120.4

Q ss_pred             CCCCCceEEeC-CeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCC
Q 028356            1 MSTGELLSIEP-LELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP   79 (210)
Q Consensus         1 m~~~~lL~i~P-~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~   79 (210)
                      |+.+.+|.|+| .+|.|.+++.+++.+.|+|+|+++.++|||||||+|++|||||+.|+|.||++++|.|.+|++...|.
T Consensus         3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~   82 (218)
T KOG0439|consen    3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPP   82 (218)
T ss_pred             ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCch
Confidence            35678999999 58999999999999999999999999999999999999999999999999999999999999877789


Q ss_pred             CCCCCCeEEEEEEecCCCCCccchhHHhhcccC--CCeeeEEEeEEEEeCCCCCCCCCCCC
Q 028356           80 DMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA--GHVVEECKLRVIYVSPPQPPSPVPEG  138 (210)
Q Consensus        80 ~~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~--~~~v~e~KLrv~~~~p~~~~s~~~~~  138 (210)
                      +++|+|||+||++.++.+ +..++ .++|....  +..+.+.+++|.|+.|+.+++....+
T Consensus        83 d~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~  141 (218)
T KOG0439|consen   83 DFKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKL  141 (218)
T ss_pred             hhcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCccccccc
Confidence            999999999999999986 33344 36776655  78899999999999988877666544

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PRK09918 putative fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK11385 putativi pili assembly chaperone; Provisional Back     alignment and domain information
>PRK09926 putative chaperone protein EcpD; Provisional Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PRK15249 fimbrial chaperone protein StbB; Provisional Back     alignment and domain information
>PRK15299 fimbrial chaperone protein StiB; Provisional Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>PRK15211 fimbrial chaperone protein PefD; Provisional Back     alignment and domain information
>PRK15295 fimbrial assembly chaperone SthB; Provisional Back     alignment and domain information
>PRK15246 fimbrial assembly chaperone StbE; Provisional Back     alignment and domain information
>PRK15290 lfpB fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK15192 fimbrial chaperone BcfG; Provisional Back     alignment and domain information
>PRK15208 long polar fimbrial chaperone LpfB; Provisional Back     alignment and domain information
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK15188 fimbrial chaperone protein BcfB; Provisional Back     alignment and domain information
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK15195 fimbrial chaperone protein FimC; Provisional Back     alignment and domain information
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1) Back     alignment and domain information
>PRK15254 fimbrial chaperone protein StdC; Provisional Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PRK15218 fimbrial chaperone protein PegB; Provisional Back     alignment and domain information
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B Back     alignment and domain information
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain Back     alignment and domain information
>PRK15224 pili assembly chaperone protein SafB; Provisional Back     alignment and domain information
>PRK15233 putative fimbrial chaperone protein SefB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query210
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 2e-12
2rr3_A130 Solution Structure Of The Complex Between Human Vap 3e-12
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 1e-11
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 4e-11
1z9l_A128 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp 8e-11
1wic_A152 Solution Structure Of The Msp Domain Of Riken Cdna 7e-07
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure 
Iteration: 1

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 7/123 (5%)
Query: 5   ELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRS 63
           ++LS+EP  ELKF       ++ +L+L N TD  V FKVKTT P++YCVRPN+GI+   +
Sbjct: 8   QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGA 67
Query: 64  TCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA-GHVVEECKLR 122
           + ++ V +Q   +  P+ + K KF++QS+     T+    + E   KEA    + + KLR
Sbjct: 68  SINVSVMLQPF-DYDPNEKSKHKFMVQSMFAPTDTS----DMEAVWKEAKPEDLMDSKLR 122
Query: 123 VIY 125
            ++
Sbjct: 123 CVF 125
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128 Back     alignment and structure
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna 6030424e15 Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query210
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 1e-45
2cri_A147 Vesicle-associated membrane protein-associated pro 1e-38
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 4e-37
1z9l_A128 Vesicle-associated membrane protein-associated pro 5e-36
1m1s_A116 WR4; structural genomics, major sperm protein, bio 6e-30
1row_A109 SSP-19, MSP-domain protein like family member; bet 1e-25
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
 Score =  147 bits (372), Expect = 1e-45
 Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 6/144 (4%)

Query: 1   MSTGELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIV 59
           +  G LL I P  EL F      +    + L+N T N VAFKV+TT P+KY V+P+    
Sbjct: 13  VFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSC 72

Query: 60  LPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA-GHVVEE 118
            P ++ DIIV+          +  +D+FL+ + +    +         F KE   + V E
Sbjct: 73  DPGASIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVME 128

Query: 119 CKLRVIYVSPPQPPSPVPEGSEEG 142
            +LR   V   +P S +  G   G
Sbjct: 129 HRLRCHTVESSKPNSLMLSGPSSG 152
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query210
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 100.0
2cri_A147 Vesicle-associated membrane protein-associated pro 100.0
1z9l_A128 Vesicle-associated membrane protein-associated pro 100.0
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 100.0
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.96
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.96
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 98.43
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 98.18
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 98.15
3qis_A 366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 97.64
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 96.68
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 96.3
3q48_A257 Chaperone CUPB2; IG fold, periplasmic chaperone; 2 94.49
2co7_B221 SAFB chaperone, putative fimbriae assembly chapero 92.73
1klf_A205 FIMC chaperone, chaperone protein FIMC; adhesin-ch 92.42
2xg5_A218 PAPD, chaperone protein PAPD; chaperone, chaperone 92.33
4ay0_A218 Chaperone protein CAF1M; amino acid motifs, bacter 91.77
4djm_A239 DRAB; chaperone, PILI; 2.52A {Escherichia coli} 91.26
1l4i_A206 SFAE protein; periplasmic chaperone, immunoglobuli 90.34
2r39_A118 FIXG-related protein; structural GE PSI-2, protein 88.95
3gfu_C224 Chaperone protein FAEE; immunoglobulin like fold, 88.28
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 83.52
3rfr_A419 PMOB; membrane, oxidoreductase; 2.68A {Methylocyst 81.91
1yew_A382 Particulate methane monooxygenase, B subunit; memb 80.03
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
Probab=100.00  E-value=2.3e-39  Score=260.65  Aligned_cols=135  Identities=32%  Similarity=0.491  Sum_probs=124.7

Q ss_pred             CCCceEEeCC-eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCCC
Q 028356            3 TGELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM   81 (210)
Q Consensus         3 ~~~lL~i~P~-eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~~   81 (210)
                      .+++|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|||||+.|+|.||++++|.|+||++.+    .
T Consensus        15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~   90 (152)
T 1wic_A           15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V   90 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence            4689999998 8999999999999999999999999999999999999999999999999999999999999753    2


Q ss_pred             CCCCeEEEEEEecC--CCCCccchhHHhhcccCCCeeeEEEeEEEEeCCCCCCCCCCCCCCCC
Q 028356           82 QCKDKFLLQSVKTN--DGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEEG  142 (210)
Q Consensus        82 ~~kDKFlVqs~~~~--~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~p~~~~s~~~~~~~~~  142 (210)
                      .|+|||+||++.++  ++++..|+. ++|++..+..++++||||+|+.|++|+|++.+|.++|
T Consensus        91 ~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~~  152 (152)
T 1wic_A           91 SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG  152 (152)
T ss_dssp             CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred             CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCccccCCCCC
Confidence            68999999999999  666777885 8999888888999999999999999999999998765
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Back     alignment and structure
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C Back     alignment and structure
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Back     alignment and structure
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A Back     alignment and structure
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli} Back     alignment and structure
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 Back     alignment and structure
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} Back     alignment and structure
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A Back     alignment and structure
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 210
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 7e-49
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 9e-38
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 1e-27
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 3e-27
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  154 bits (391), Expect = 7e-49
 Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 6/144 (4%)

Query: 1   MSTGELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIV 59
           +  G LL I P  EL F      +    + L+N T N VAFKV+TT P+KY V+P+    
Sbjct: 13  VFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSC 72

Query: 60  LPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA-GHVVEE 118
            P ++ DIIV+          +  +D+FL+ + +    +         F KE   + V E
Sbjct: 73  DPGASIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVME 128

Query: 119 CKLRVIYVSPPQPPSPVPEGSEEG 142
            +LR   V   +P S +  G   G
Sbjct: 129 HRLRCHTVESSKPNSLMLSGPSSG 152
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query210
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 100.0
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 99.98
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.93
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.92
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 95.83
d1p5va1141 Chaperone protein Caf1m {Yersinia pestis [TaxId: 6 95.48
d3bwuc1121 Periplasmic chaperone FimC {Escherichia coli [TaxI 94.0
d2j2za1124 Pilus chaperone PapD, N-domain {Escherichia coli [ 93.98
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 86.87
d1gyva_120 Gamma1-adaptin domain {Human (Homo sapiens) [TaxId 85.04
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 81.9
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-35  Score=235.90  Aligned_cols=136  Identities=30%  Similarity=0.464  Sum_probs=120.6

Q ss_pred             CCCCceEEeCC-eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCEEEEEEEeccCccCCCC
Q 028356            2 STGELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPD   80 (210)
Q Consensus         2 ~~~~lL~i~P~-eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Vtlq~~~~~p~~   80 (210)
                      ..|+||.|+|. +|+|.+++++.++|.|+|+|.++++||||||||+|++|+|||++|+|.||++++|.|++++.    +.
T Consensus        14 ~~~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~~~----~~   89 (152)
T d1wica_          14 FKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGG----LT   89 (152)
T ss_dssp             BCCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSS----SC
T ss_pred             cCCCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEECCC----Cc
Confidence            45789999997 79999999999999999999999999999999999999999999999999999999999864    24


Q ss_pred             CCCCCeEEEEEEecCCCC--CccchhHHhhcccCCCeeeEEEeEEEEeCCCCCCCCCCCCCCCC
Q 028356           81 MQCKDKFLLQSVKTNDGT--TAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEEG  142 (210)
Q Consensus        81 ~~~kDKFlVqs~~~~~~~--~~~di~~~~f~k~~~~~v~e~KLrv~~~~p~~~~s~~~~~~~~~  142 (210)
                      +.|+|||+|+++.+++..  +..|+ .+||+...+..++++||+|+|+.+++|++++..|+++|
T Consensus        90 ~~~kdKFli~~~~v~~~~~~~~~d~-~~~wk~~~~~~i~~~kLkv~~~~~~~p~s~~~~~~~~G  152 (152)
T d1wica_          90 VSAQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG  152 (152)
T ss_dssp             CCSSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred             ccCCCcEEEEEEEeCCCCCCCccCH-HHHhhcCCcCcEEEEEEEEEEeCCCCCCCccccCCCCC
Confidence            578999999999997654  34566 48898777888999999999999999988887777654
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure