Citrus Sinensis ID: 028358
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 210 | ||||||
| 359483369 | 213 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 0.981 | 0.668 | 2e-74 | |
| 225444511 | 213 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 0.981 | 0.668 | 3e-74 | |
| 224113625 | 209 | predicted protein [Populus trichocarpa] | 0.947 | 0.952 | 0.681 | 9e-69 | |
| 255554897 | 221 | conserved hypothetical protein [Ricinus | 0.966 | 0.918 | 0.671 | 5e-64 | |
| 224078618 | 217 | predicted protein [Populus trichocarpa] | 0.971 | 0.940 | 0.645 | 1e-63 | |
| 356555664 | 193 | PREDICTED: uncharacterized protein LOC10 | 0.919 | 1.0 | 0.590 | 5e-57 | |
| 449433948 | 211 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 0.971 | 0.592 | 3e-56 | |
| 449479445 | 211 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.976 | 0.971 | 0.592 | 5e-56 | |
| 356548961 | 195 | PREDICTED: uncharacterized protein LOC10 | 0.923 | 0.994 | 0.587 | 8e-55 | |
| 388520979 | 218 | unknown [Medicago truncatula] | 0.957 | 0.922 | 0.563 | 3e-51 |
| >gi|359483369|ref|XP_003632945.1| PREDICTED: uncharacterized protein LOC100855186 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/214 (66%), Positives = 167/214 (78%), Gaps = 5/214 (2%)
Query: 1 MAKGRKLTTSRCERYLGSYSYSNGQGTNGGVSELGEEDVWSTVDDVEDSNDEV---VINN 57
MAKGRKLTTSR ER LGS++Y +GQG SELGEEDVWS VDD+ + +D V
Sbjct: 1 MAKGRKLTTSRSERLLGSFAYGHGQGAGADSSELGEEDVWSMVDDMVERDDHVNGGGGGG 60
Query: 58 PRNEWSPRAAGESNVGFSTRSRRRNTRDD-HHVGGLSLAFDDAGKTSASRIVHQFRANDS 116
+++WSPRA GE + + RRR RDD H VGGLSLAFDD+GKT++SRIVHQ+R D
Sbjct: 61 GQSDWSPRAGGEPAI-RNHHHRRRIPRDDRHQVGGLSLAFDDSGKTASSRIVHQYRPQDG 119
Query: 117 MAASPRGHQMATSAPVNVPDWSKIYRVDSVDSMHDSDDERDMEMIPPHEYLAREYARSKK 176
+ SPRGH MATSAPVNVPDW KI RVDSV+S+HDSDD+R++EM+PPHEYLAREYA S+K
Sbjct: 120 VTPSPRGHHMATSAPVNVPDWHKILRVDSVESLHDSDDDRELEMVPPHEYLAREYAASRK 179
Query: 177 TGGASVFEGVGRTLKGRDLRRVRDAVWSQTGFDG 210
SV EGVGRTLKGRD+ RVRDAVWSQTGFDG
Sbjct: 180 MAATSVLEGVGRTLKGRDMSRVRDAVWSQTGFDG 213
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444511|ref|XP_002274403.1| PREDICTED: uncharacterized protein LOC100246942 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224113625|ref|XP_002316526.1| predicted protein [Populus trichocarpa] gi|222859591|gb|EEE97138.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255554897|ref|XP_002518486.1| conserved hypothetical protein [Ricinus communis] gi|223542331|gb|EEF43873.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224078618|ref|XP_002305577.1| predicted protein [Populus trichocarpa] gi|222848541|gb|EEE86088.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356555664|ref|XP_003546150.1| PREDICTED: uncharacterized protein LOC100796798 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449433948|ref|XP_004134758.1| PREDICTED: uncharacterized protein LOC101218032 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449479445|ref|XP_004155601.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101218032 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356548961|ref|XP_003542867.1| PREDICTED: uncharacterized protein LOC100798894 [Glycine max] | Back alignment and taxonomy information |
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| >gi|388520979|gb|AFK48551.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 210 | ||||||
| TAIR|locus:2027392 | 201 | AT1G11700 "AT1G11700" [Arabido | 0.890 | 0.930 | 0.473 | 3e-37 | |
| TAIR|locus:2036803 | 203 | AT1G61930 "AT1G61930" [Arabido | 0.909 | 0.940 | 0.450 | 1.1e-34 | |
| TAIR|locus:2141687 | 183 | AT4G21930 "AT4G21930" [Arabido | 0.409 | 0.469 | 0.54 | 5.2e-28 | |
| TAIR|locus:2125796 | 168 | AT4G04630 "AT4G04630" [Arabido | 0.461 | 0.577 | 0.417 | 3.4e-18 | |
| TAIR|locus:2120608 | 157 | AT4G21970 "AT4G21970" [Arabido | 0.461 | 0.617 | 0.4 | 1.8e-17 | |
| TAIR|locus:2143538 | 166 | AT5G03230 "AT5G03230" [Arabido | 0.504 | 0.638 | 0.377 | 9.1e-13 | |
| TAIR|locus:2116457 | 144 | AT4G26950 "AT4G26950" [Arabido | 0.433 | 0.631 | 0.415 | 1.2e-12 | |
| TAIR|locus:2175846 | 163 | AT5G60680 "AT5G60680" [Arabido | 0.5 | 0.644 | 0.396 | 1.9e-12 | |
| TAIR|locus:2086375 | 243 | AT3G15040 "AT3G15040" [Arabido | 0.252 | 0.218 | 0.592 | 2.8e-11 | |
| TAIR|locus:2096900 | 148 | AT3G45210 "AT3G45210" [Arabido | 0.366 | 0.520 | 0.421 | 4.5e-11 |
| TAIR|locus:2027392 AT1G11700 "AT1G11700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 106/224 (47%), Positives = 126/224 (56%)
Query: 1 MAKGRKLTTSRCERYLGS-YSYSNGQGTNG-GVSELGEEDVWSTXXXXXXXXXXXXXXXP 58
MA+GRKLT S+ ERYLGS YSY + G + SEL EED+WS
Sbjct: 1 MARGRKLTMSQSERYLGSSYSYGDSNGNSATDESELTEEDIWSHAVDHSPEMLES----- 55
Query: 59 RNEWSPRAAGESN--VGFXXXXXXXXXXXXXXVGGLSLAFDDAGKTSASRIVHQFRANDS 116
W+ R A N VG GGLSLAF+DA +S+ RIVHQ R
Sbjct: 56 HGAWNTRDAVVRNGRVG----------------GGLSLAFEDA--SSSPRIVHQIRGGGE 97
Query: 117 MAASPRG-----HQMATSAPVNVPDWSKIYRXXXXXXXXXXXXERDME---MIPPHEYLA 168
G Q+A+SAPVNVPDWSKIYR E + + M+PPHEYLA
Sbjct: 98 GGGGGGGGGRVERQLASSAPVNVPDWSKIYRVNSVESIHESDEEEEEDSGMMMPPHEYLA 157
Query: 169 R-EYARSKKTGGA-SVFEGVGRTLKGRDLRRVRDAVWSQTGFDG 210
+ + RS+K+GG SVFEGVGRTLKGR+LRRVRDA+WSQTGF G
Sbjct: 158 KSQQRRSRKSGGGGSVFEGVGRTLKGRELRRVRDAIWSQTGFYG 201
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| TAIR|locus:2036803 AT1G61930 "AT1G61930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2141687 AT4G21930 "AT4G21930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2125796 AT4G04630 "AT4G04630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2120608 AT4G21970 "AT4G21970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2143538 AT5G03230 "AT5G03230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2116457 AT4G26950 "AT4G26950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2175846 AT5G60680 "AT5G60680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2086375 AT3G15040 "AT3G15040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2096900 AT3G45210 "AT3G45210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00010751001 | SubName- Full=Chromosome chr10 scaffold_282, whole genome shotgun sequence; (213 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 210 | |||
| pfam04520 | 146 | pfam04520, Senescence_reg, Senescence regulator | 4e-36 |
| >gnl|CDD|218126 pfam04520, Senescence_reg, Senescence regulator | Back alignment and domain information |
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Score = 123 bits (311), Expect = 4e-36
Identities = 62/133 (46%), Positives = 72/133 (54%), Gaps = 15/133 (11%)
Query: 86 DHHVGGLSLAFDDA---GKTSASRIVHQFRANDSMAASPRGHQMATSAPVNVPDWSKIYR 142
G S AF TS++R + + A G + A+SAPVNVPDWSKI R
Sbjct: 21 LARSSGSSPAFKRGLRGPPTSSARTIPKIPKGG--RAGAGGAKAASSAPVNVPDWSKILR 78
Query: 143 VDSVDSMHDSD-----DERDMEMIPPHEYLAREYARSKKTGGASVFEGVGRTLKGRDLRR 197
S+ DSD D M+PPHEYLAR A S SV EGVGRTLKGRDLRR
Sbjct: 79 GRRRRSIEDSDDDDEEDGDGAMMVPPHEYLARRRAAS-----FSVLEGVGRTLKGRDLRR 133
Query: 198 VRDAVWSQTGFDG 210
VR+AV +TGF
Sbjct: 134 VRNAVLRKTGFLD 146
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This protein regulates the expression of proteins associated with leaf senescence in plants. Length = 146 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 210 | |||
| PF04520 | 152 | Senescence_reg: Senescence regulator; InterPro: IP | 100.0 |
| >PF04520 Senescence_reg: Senescence regulator; InterPro: IPR007608 This family contains several uncharacterised proteins | Back alignment and domain information |
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Probab=100.00 E-value=2e-46 Score=308.49 Aligned_cols=101 Identities=50% Similarity=0.769 Sum_probs=78.5
Q ss_pred CccceeeccccCccCCCCCCCCCcCCCCCCCCCCCcccccccCCCC-----CCCCCcccccCCCCCeeehhhhhhccccc
Q 028358 103 SASRIVHQFRANDSMAASPRGHQMATSAPVNVPDWSKIYRVDSVDS-----MHDSDDERDMEMIPPHEYLAREYARSKKT 177 (210)
Q Consensus 103 ~s~r~v~~~~~~~~~~~~~~~~~~~~SaPVnIP~wsk~~r~~~~~~-----~~d~dd~~~~~~vPPHe~vaRr~ars~~~ 177 (210)
+++|+|++.. ..........++++|+|||||+|++|++...... .++++++++.+|||||||||| +.+
T Consensus 47 s~~R~~~~~~--~~~~~~~~~~~~~~SaPV~IP~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~vPPHe~~ar-----~~~ 119 (152)
T PF04520_consen 47 SSPRMIPRSP--SSGRSSSRSRKAASSAPVNIPDWSKILGSRRRRREEDDDDDDDEDDDGGEMVPPHELVAR-----RRA 119 (152)
T ss_pred CCCcccCCCC--CCcCCCCCCCccCCCCcccCcCccccccccccccccccccccccccCCccccCcHHHHhh-----hcc
Confidence 5667777654 1234455667889999999999999986433221 122234567889999999999 246
Q ss_pred cccccccCCCCccccchhhhhhhhhhhccccCC
Q 028358 178 GGASVFEGVGRTLKGRDLRRVRDAVWSQTGFDG 210 (210)
Q Consensus 178 aafSV~eG~GRTLKGRDL~rVRNAVlr~TGFle 210 (210)
++||||||+|||||||||+|||||||+||||||
T Consensus 120 ~s~Sv~eG~GRTLKGRDL~rVRNAVl~~TGFle 152 (152)
T PF04520_consen 120 ASFSVCEGVGRTLKGRDLRRVRNAVLRQTGFLE 152 (152)
T ss_pred cCcccccCCCccchhhHHHHHHHHHHhhhccCC
Confidence 679999999999999999999999999999997
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00