Citrus Sinensis ID: 028358


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
MAKGRKLTTSRCERYLGSYSYSNGQGTNGGVSELGEEDVWSTVDDVEDSNDEVVINNPRNEWSPRAAGESNVGFSTRSRRRNTRDDHHVGGLSLAFDDAGKTSASRIVHQFRANDSMAASPRGHQMATSAPVNVPDWSKIYRVDSVDSMHDSDDERDMEMIPPHEYLAREYARSKKTGGASVFEGVGRTLKGRDLRRVRDAVWSQTGFDG
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccc
ccccccccccHHHHHcccccccccccccccHHHccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccEEEEcccccccccccHHHHHHHHHHHccccc
makgrklttsrcerylgsysysngqgtnggvselgeedvwstvddvedsndevvinnprnewspraagesnvgfstrsrrrntrddhhvgglslafddagktsASRIVHQfrandsmaasprghqmatsapvnvpdwskiyrvdsvdsmhdsdderdmemippheYLAREYARskktggasvfegvgrtlkgrdlrRVRDAVWSQTGFDG
makgrklttsrcerylgsysysngqgtngGVSELGEEDVWSTVDDVEDSNDEVVinnprnewspraagesnvgfstrsrrrntrddhhvgglslafddagktSASRIVHQFRANDsmaasprghqmatsapvnvpdwSKIYRVDSVDSMHDSDDERDMEMIPPHEYLAREYarskktggasvfegvgrtlkgrdlrrvrdavwsqtgfdg
MAKGRKLTTSRCERYLGSYSYSNGQGTNGGVSELGEEDVWSTvddvedsndevvinnPRNEWSPRAAGESNVGFstrsrrrntrddhhVGGLSLAFDDAGKTSASRIVHQFRANDSMAASPRGHQMATSAPVNVPDWSKIYRvdsvdsmhdsddERDMEMIPPHEYLAREYARSKKTGGASVFEGVGRTLKGRDLRRVRDAVWSQTGFDG
****************************************************************************************************************************************WSKIYR***************************************VFEGVGRTLKGRDLRRVRDAVW*******
************************************EDVWST********************************************************************************************PDWSKIYRVDSVDSMHDSDDERDMEMIPPHEYLAR******************RTLKGRDLRRVRDAVWSQTGFD*
********TSRCERYLGSYSYSNGQGTNGGVSELGEEDVWSTVDDVEDSNDEVVINNPRNEWSPRAAGESNVGFSTRSRRRNTRDDHHVGGLSLAFDDAGKTSASRIVHQFRANDS**************PVNVPDWSKIYRVDSVDSMHDSDDERDMEMIPPHEYLAREYARSKKTGGASVFEGVGRTLKGRDLRRVRDAVWSQTGFDG
*********************************LG***************************************************************************************************************************EMIPPHEYLAREYARSKKTGGASVFEGVGRTLKGRDLRRVRDAVWSQTGFDG
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKGRKLTTSRCERYLGSYSYSNGQGTNGGVSELGEEDVWSTVDDVEDSNDEVVINNPRNEWSPRAAGESNVGFSTRSRRRNTRDDHHVGGLSLAFDDAGKTSASRIVHQFRANDSMAASPRGHQMATSAPVNVPDWSKIYRVDSVDSMHDSDDERDMEMIPPHEYLAREYARSKKTGGASVFEGVGRTLKGRDLRRVRDAVWSQTGFDG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query210
359483369213 PREDICTED: uncharacterized protein LOC10 0.995 0.981 0.668 2e-74
225444511213 PREDICTED: uncharacterized protein LOC10 0.995 0.981 0.668 3e-74
224113625209 predicted protein [Populus trichocarpa] 0.947 0.952 0.681 9e-69
255554897221 conserved hypothetical protein [Ricinus 0.966 0.918 0.671 5e-64
224078618217 predicted protein [Populus trichocarpa] 0.971 0.940 0.645 1e-63
356555664193 PREDICTED: uncharacterized protein LOC10 0.919 1.0 0.590 5e-57
449433948211 PREDICTED: uncharacterized protein LOC10 0.976 0.971 0.592 3e-56
449479445211 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.976 0.971 0.592 5e-56
356548961195 PREDICTED: uncharacterized protein LOC10 0.923 0.994 0.587 8e-55
388520979218 unknown [Medicago truncatula] 0.957 0.922 0.563 3e-51
>gi|359483369|ref|XP_003632945.1| PREDICTED: uncharacterized protein LOC100855186 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 143/214 (66%), Positives = 167/214 (78%), Gaps = 5/214 (2%)

Query: 1   MAKGRKLTTSRCERYLGSYSYSNGQGTNGGVSELGEEDVWSTVDDVEDSNDEV---VINN 57
           MAKGRKLTTSR ER LGS++Y +GQG     SELGEEDVWS VDD+ + +D V       
Sbjct: 1   MAKGRKLTTSRSERLLGSFAYGHGQGAGADSSELGEEDVWSMVDDMVERDDHVNGGGGGG 60

Query: 58  PRNEWSPRAAGESNVGFSTRSRRRNTRDD-HHVGGLSLAFDDAGKTSASRIVHQFRANDS 116
            +++WSPRA GE  +  +   RRR  RDD H VGGLSLAFDD+GKT++SRIVHQ+R  D 
Sbjct: 61  GQSDWSPRAGGEPAI-RNHHHRRRIPRDDRHQVGGLSLAFDDSGKTASSRIVHQYRPQDG 119

Query: 117 MAASPRGHQMATSAPVNVPDWSKIYRVDSVDSMHDSDDERDMEMIPPHEYLAREYARSKK 176
           +  SPRGH MATSAPVNVPDW KI RVDSV+S+HDSDD+R++EM+PPHEYLAREYA S+K
Sbjct: 120 VTPSPRGHHMATSAPVNVPDWHKILRVDSVESLHDSDDDRELEMVPPHEYLAREYAASRK 179

Query: 177 TGGASVFEGVGRTLKGRDLRRVRDAVWSQTGFDG 210
               SV EGVGRTLKGRD+ RVRDAVWSQTGFDG
Sbjct: 180 MAATSVLEGVGRTLKGRDMSRVRDAVWSQTGFDG 213




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444511|ref|XP_002274403.1| PREDICTED: uncharacterized protein LOC100246942 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224113625|ref|XP_002316526.1| predicted protein [Populus trichocarpa] gi|222859591|gb|EEE97138.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255554897|ref|XP_002518486.1| conserved hypothetical protein [Ricinus communis] gi|223542331|gb|EEF43873.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224078618|ref|XP_002305577.1| predicted protein [Populus trichocarpa] gi|222848541|gb|EEE86088.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555664|ref|XP_003546150.1| PREDICTED: uncharacterized protein LOC100796798 [Glycine max] Back     alignment and taxonomy information
>gi|449433948|ref|XP_004134758.1| PREDICTED: uncharacterized protein LOC101218032 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449479445|ref|XP_004155601.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101218032 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356548961|ref|XP_003542867.1| PREDICTED: uncharacterized protein LOC100798894 [Glycine max] Back     alignment and taxonomy information
>gi|388520979|gb|AFK48551.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query210
TAIR|locus:2027392201 AT1G11700 "AT1G11700" [Arabido 0.890 0.930 0.473 3e-37
TAIR|locus:2036803203 AT1G61930 "AT1G61930" [Arabido 0.909 0.940 0.450 1.1e-34
TAIR|locus:2141687183 AT4G21930 "AT4G21930" [Arabido 0.409 0.469 0.54 5.2e-28
TAIR|locus:2125796168 AT4G04630 "AT4G04630" [Arabido 0.461 0.577 0.417 3.4e-18
TAIR|locus:2120608157 AT4G21970 "AT4G21970" [Arabido 0.461 0.617 0.4 1.8e-17
TAIR|locus:2143538166 AT5G03230 "AT5G03230" [Arabido 0.504 0.638 0.377 9.1e-13
TAIR|locus:2116457144 AT4G26950 "AT4G26950" [Arabido 0.433 0.631 0.415 1.2e-12
TAIR|locus:2175846163 AT5G60680 "AT5G60680" [Arabido 0.5 0.644 0.396 1.9e-12
TAIR|locus:2086375243 AT3G15040 "AT3G15040" [Arabido 0.252 0.218 0.592 2.8e-11
TAIR|locus:2096900148 AT3G45210 "AT3G45210" [Arabido 0.366 0.520 0.421 4.5e-11
TAIR|locus:2027392 AT1G11700 "AT1G11700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 106/224 (47%), Positives = 126/224 (56%)

Query:     1 MAKGRKLTTSRCERYLGS-YSYSNGQGTNG-GVSELGEEDVWSTXXXXXXXXXXXXXXXP 58
             MA+GRKLT S+ ERYLGS YSY +  G +    SEL EED+WS                 
Sbjct:     1 MARGRKLTMSQSERYLGSSYSYGDSNGNSATDESELTEEDIWSHAVDHSPEMLES----- 55

Query:    59 RNEWSPRAAGESN--VGFXXXXXXXXXXXXXXVGGLSLAFDDAGKTSASRIVHQFRANDS 116
                W+ R A   N  VG                GGLSLAF+DA  +S+ RIVHQ R    
Sbjct:    56 HGAWNTRDAVVRNGRVG----------------GGLSLAFEDA--SSSPRIVHQIRGGGE 97

Query:   117 MAASPRG-----HQMATSAPVNVPDWSKIYRXXXXXXXXXXXXERDME---MIPPHEYLA 168
                   G      Q+A+SAPVNVPDWSKIYR            E + +   M+PPHEYLA
Sbjct:    98 GGGGGGGGGRVERQLASSAPVNVPDWSKIYRVNSVESIHESDEEEEEDSGMMMPPHEYLA 157

Query:   169 R-EYARSKKTGGA-SVFEGVGRTLKGRDLRRVRDAVWSQTGFDG 210
             + +  RS+K+GG  SVFEGVGRTLKGR+LRRVRDA+WSQTGF G
Sbjct:   158 KSQQRRSRKSGGGGSVFEGVGRTLKGRELRRVRDAIWSQTGFYG 201




GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2036803 AT1G61930 "AT1G61930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141687 AT4G21930 "AT4G21930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125796 AT4G04630 "AT4G04630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120608 AT4G21970 "AT4G21970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143538 AT5G03230 "AT5G03230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116457 AT4G26950 "AT4G26950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175846 AT5G60680 "AT5G60680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086375 AT3G15040 "AT3G15040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096900 AT3G45210 "AT3G45210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00010751001
SubName- Full=Chromosome chr10 scaffold_282, whole genome shotgun sequence; (213 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query210
pfam04520146 pfam04520, Senescence_reg, Senescence regulator 4e-36
>gnl|CDD|218126 pfam04520, Senescence_reg, Senescence regulator Back     alignment and domain information
 Score =  123 bits (311), Expect = 4e-36
 Identities = 62/133 (46%), Positives = 72/133 (54%), Gaps = 15/133 (11%)

Query: 86  DHHVGGLSLAFDDA---GKTSASRIVHQFRANDSMAASPRGHQMATSAPVNVPDWSKIYR 142
                G S AF        TS++R + +        A   G + A+SAPVNVPDWSKI R
Sbjct: 21  LARSSGSSPAFKRGLRGPPTSSARTIPKIPKGG--RAGAGGAKAASSAPVNVPDWSKILR 78

Query: 143 VDSVDSMHDSD-----DERDMEMIPPHEYLAREYARSKKTGGASVFEGVGRTLKGRDLRR 197
                S+ DSD     D     M+PPHEYLAR  A S      SV EGVGRTLKGRDLRR
Sbjct: 79  GRRRRSIEDSDDDDEEDGDGAMMVPPHEYLARRRAAS-----FSVLEGVGRTLKGRDLRR 133

Query: 198 VRDAVWSQTGFDG 210
           VR+AV  +TGF  
Sbjct: 134 VRNAVLRKTGFLD 146


This protein regulates the expression of proteins associated with leaf senescence in plants. Length = 146

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 210
PF04520152 Senescence_reg: Senescence regulator; InterPro: IP 100.0
>PF04520 Senescence_reg: Senescence regulator; InterPro: IPR007608 This family contains several uncharacterised proteins Back     alignment and domain information
Probab=100.00  E-value=2e-46  Score=308.49  Aligned_cols=101  Identities=50%  Similarity=0.769  Sum_probs=78.5

Q ss_pred             CccceeeccccCccCCCCCCCCCcCCCCCCCCCCCcccccccCCCC-----CCCCCcccccCCCCCeeehhhhhhccccc
Q 028358          103 SASRIVHQFRANDSMAASPRGHQMATSAPVNVPDWSKIYRVDSVDS-----MHDSDDERDMEMIPPHEYLAREYARSKKT  177 (210)
Q Consensus       103 ~s~r~v~~~~~~~~~~~~~~~~~~~~SaPVnIP~wsk~~r~~~~~~-----~~d~dd~~~~~~vPPHe~vaRr~ars~~~  177 (210)
                      +++|+|++..  ..........++++|+|||||+|++|++......     .++++++++.+||||||||||     +.+
T Consensus        47 s~~R~~~~~~--~~~~~~~~~~~~~~SaPV~IP~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~vPPHe~~ar-----~~~  119 (152)
T PF04520_consen   47 SSPRMIPRSP--SSGRSSSRSRKAASSAPVNIPDWSKILGSRRRRREEDDDDDDDEDDDGGEMVPPHELVAR-----RRA  119 (152)
T ss_pred             CCCcccCCCC--CCcCCCCCCCccCCCCcccCcCccccccccccccccccccccccccCCccccCcHHHHhh-----hcc
Confidence            5667777654  1234455667889999999999999986433221     122234567889999999999     246


Q ss_pred             cccccccCCCCccccchhhhhhhhhhhccccCC
Q 028358          178 GGASVFEGVGRTLKGRDLRRVRDAVWSQTGFDG  210 (210)
Q Consensus       178 aafSV~eG~GRTLKGRDL~rVRNAVlr~TGFle  210 (210)
                      ++||||||+|||||||||+|||||||+||||||
T Consensus       120 ~s~Sv~eG~GRTLKGRDL~rVRNAVl~~TGFle  152 (152)
T PF04520_consen  120 ASFSVCEGVGRTLKGRDLRRVRNAVLRQTGFLE  152 (152)
T ss_pred             cCcccccCCCccchhhHHHHHHHHHHhhhccCC
Confidence            679999999999999999999999999999997




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00